Multiple sequence alignment - TraesCS3B01G397900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G397900 chr3B 100.000 7097 0 0 1 7097 628123398 628116302 0.000000e+00 13106.0
1 TraesCS3B01G397900 chr3B 93.955 2283 94 16 3367 5622 628399951 628397686 0.000000e+00 3411.0
2 TraesCS3B01G397900 chr3B 89.953 1931 108 40 1468 3358 628401907 628400023 0.000000e+00 2412.0
3 TraesCS3B01G397900 chr3B 89.362 658 39 7 5626 6253 628397584 628396928 0.000000e+00 798.0
4 TraesCS3B01G397900 chr3B 83.926 815 60 45 704 1468 628403365 628402572 0.000000e+00 713.0
5 TraesCS3B01G397900 chr3B 88.172 93 11 0 6844 6936 60291958 60291866 2.090000e-20 111.0
6 TraesCS3B01G397900 chr3B 87.209 86 11 0 6498 6583 732827361 732827276 1.630000e-16 99.0
7 TraesCS3B01G397900 chr3B 86.517 89 8 4 6498 6584 798547419 798547505 2.110000e-15 95.3
8 TraesCS3B01G397900 chr3B 85.556 90 12 1 6494 6583 237977245 237977333 7.580000e-15 93.5
9 TraesCS3B01G397900 chr3D 94.596 3146 100 29 3378 6500 472948748 472945650 0.000000e+00 4804.0
10 TraesCS3B01G397900 chr3D 93.912 2283 94 17 3367 5622 473439723 473437459 0.000000e+00 3404.0
11 TraesCS3B01G397900 chr3D 90.108 1941 108 39 1464 3366 473441681 473439787 0.000000e+00 2444.0
12 TraesCS3B01G397900 chr3D 88.148 1485 97 38 2 1468 472952360 472950937 0.000000e+00 1694.0
13 TraesCS3B01G397900 chr3D 95.085 1058 34 8 2305 3357 472949862 472948818 0.000000e+00 1650.0
14 TraesCS3B01G397900 chr3D 90.820 817 31 19 1477 2268 472950661 472949864 0.000000e+00 1053.0
15 TraesCS3B01G397900 chr3D 95.164 517 25 0 6581 7097 472945652 472945136 0.000000e+00 817.0
16 TraesCS3B01G397900 chr3D 89.107 661 38 13 5626 6253 473437357 473436698 0.000000e+00 791.0
17 TraesCS3B01G397900 chr3D 84.894 801 50 45 717 1468 473443129 473442351 0.000000e+00 743.0
18 TraesCS3B01G397900 chr3D 89.231 260 26 1 2 261 312933767 312934024 2.470000e-84 324.0
19 TraesCS3B01G397900 chr3D 88.889 261 27 2 2 261 313051775 313052034 3.190000e-83 320.0
20 TraesCS3B01G397900 chr3D 80.278 360 45 10 288 622 570565868 570566226 1.530000e-61 248.0
21 TraesCS3B01G397900 chr3D 80.814 344 38 15 346 664 443724881 443725221 1.980000e-60 244.0
22 TraesCS3B01G397900 chr3D 86.905 168 16 4 461 623 506911822 506911988 4.370000e-42 183.0
23 TraesCS3B01G397900 chr3D 92.929 99 6 1 3382 3480 570265025 570265122 7.420000e-30 143.0
24 TraesCS3B01G397900 chr3D 88.000 75 9 0 6879 6953 37768399 37768325 9.810000e-14 89.8
25 TraesCS3B01G397900 chr3A 94.177 2284 89 19 3367 5622 615704691 615702424 0.000000e+00 3441.0
26 TraesCS3B01G397900 chr3A 88.582 1953 128 43 1464 3372 615706650 615704749 0.000000e+00 2283.0
27 TraesCS3B01G397900 chr3A 91.683 1575 78 21 4070 5615 615276735 615275185 0.000000e+00 2134.0
28 TraesCS3B01G397900 chr3A 89.993 1479 94 25 2 1468 615281313 615279877 0.000000e+00 1862.0
29 TraesCS3B01G397900 chr3A 92.655 1239 60 12 2148 3366 615278802 615277575 0.000000e+00 1755.0
30 TraesCS3B01G397900 chr3A 91.510 907 61 13 5621 6518 615275101 615274202 0.000000e+00 1234.0
31 TraesCS3B01G397900 chr3A 91.158 803 31 16 1477 2255 615279535 615278749 0.000000e+00 1053.0
32 TraesCS3B01G397900 chr3A 95.038 665 31 2 3407 4070 615277499 615276836 0.000000e+00 1044.0
33 TraesCS3B01G397900 chr3A 88.602 658 44 7 5626 6253 615702322 615701666 0.000000e+00 771.0
34 TraesCS3B01G397900 chr3A 82.843 816 55 57 703 1468 615707879 615707099 0.000000e+00 652.0
35 TraesCS3B01G397900 chr3A 85.106 94 13 1 6844 6936 47838894 47838801 2.110000e-15 95.3
36 TraesCS3B01G397900 chr5D 89.804 255 25 1 7 261 265113547 265113800 6.870000e-85 326.0
37 TraesCS3B01G397900 chr5D 82.743 226 26 7 457 670 507838798 507839022 9.400000e-44 189.0
38 TraesCS3B01G397900 chr4A 88.889 261 25 3 3 261 77166935 77167193 1.150000e-82 318.0
39 TraesCS3B01G397900 chr7A 88.803 259 28 1 2 260 377202262 377202005 4.130000e-82 316.0
40 TraesCS3B01G397900 chr7A 79.426 418 44 19 287 670 122680833 122680424 2.540000e-64 257.0
41 TraesCS3B01G397900 chr7A 86.550 171 19 3 287 455 122681600 122681432 1.220000e-42 185.0
42 TraesCS3B01G397900 chr6B 88.550 262 27 3 2 261 178671637 178671897 1.490000e-81 315.0
43 TraesCS3B01G397900 chr6B 88.764 89 10 0 6495 6583 387233439 387233527 7.530000e-20 110.0
44 TraesCS3B01G397900 chr2B 88.550 262 27 2 3 261 715080072 715080333 1.490000e-81 315.0
45 TraesCS3B01G397900 chr2B 88.506 261 24 5 2 261 151664400 151664655 1.920000e-80 311.0
46 TraesCS3B01G397900 chr2B 88.506 87 10 0 6498 6584 209089721 209089635 9.740000e-19 106.0
47 TraesCS3B01G397900 chr2B 88.235 85 10 0 6498 6582 400577468 400577552 1.260000e-17 102.0
48 TraesCS3B01G397900 chr7B 83.616 354 35 10 287 622 712723449 712723101 1.920000e-80 311.0
49 TraesCS3B01G397900 chr7B 82.451 359 37 10 287 622 699925493 699925138 2.500000e-74 291.0
50 TraesCS3B01G397900 chr1D 82.663 323 37 7 286 591 108102532 108102212 1.170000e-67 268.0
51 TraesCS3B01G397900 chr7D 78.744 414 56 11 285 669 199624509 199624919 1.530000e-61 248.0
52 TraesCS3B01G397900 chr5A 79.718 355 51 11 288 622 656051222 656051575 3.310000e-58 237.0
53 TraesCS3B01G397900 chr5A 92.708 96 6 1 3388 3483 552861673 552861579 3.450000e-28 137.0
54 TraesCS3B01G397900 chr2D 78.469 418 51 20 286 671 65684095 65684505 3.310000e-58 237.0
55 TraesCS3B01G397900 chr4D 82.090 268 29 6 283 534 423945201 423944937 2.010000e-50 211.0
56 TraesCS3B01G397900 chr6A 77.531 405 45 22 289 670 582923585 582923966 1.210000e-47 202.0
57 TraesCS3B01G397900 chr2A 86.316 95 13 0 6491 6585 384892440 384892346 3.500000e-18 104.0
58 TraesCS3B01G397900 chr5B 87.356 87 11 0 6496 6582 270325529 270325443 4.530000e-17 100.0
59 TraesCS3B01G397900 chr1B 82.727 110 17 2 6495 6603 322104634 322104526 5.860000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G397900 chr3B 628116302 628123398 7096 True 13106.000000 13106 100.000000 1 7097 1 chr3B.!!$R2 7096
1 TraesCS3B01G397900 chr3B 628396928 628403365 6437 True 1833.500000 3411 89.299000 704 6253 4 chr3B.!!$R4 5549
2 TraesCS3B01G397900 chr3D 472945136 472952360 7224 True 2003.600000 4804 92.762600 2 7097 5 chr3D.!!$R2 7095
3 TraesCS3B01G397900 chr3D 473436698 473443129 6431 True 1845.500000 3404 89.505250 717 6253 4 chr3D.!!$R3 5536
4 TraesCS3B01G397900 chr3A 615701666 615707879 6213 True 1786.750000 3441 88.551000 703 6253 4 chr3A.!!$R3 5550
5 TraesCS3B01G397900 chr3A 615274202 615281313 7111 True 1513.666667 2134 92.006167 2 6518 6 chr3A.!!$R2 6516
6 TraesCS3B01G397900 chr7A 122680424 122681600 1176 True 221.000000 257 82.988000 287 670 2 chr7A.!!$R2 383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1373 1.102978 CATTACAAAAGGAGCCCCCG 58.897 55.000 0.00 0.0 40.87 5.73 F
1902 3176 0.652592 CGCCAGATGGAAAGTAAGCG 59.347 55.000 2.18 0.0 37.39 4.68 F
2314 3670 0.908198 TGCCAAGGCCTTTTTGTGTT 59.092 45.000 17.61 0.0 41.09 3.32 F
3151 4550 4.333913 ACTATGATAGGAAGCTGCACTG 57.666 45.455 1.02 0.0 0.00 3.66 F
3240 4639 1.131126 CAGCCTCCTTGTATTGTTGCG 59.869 52.381 0.00 0.0 0.00 4.85 F
3533 4997 1.380380 CCCAACTCTTGCCATCCCC 60.380 63.158 0.00 0.0 0.00 4.81 F
5045 6647 1.405391 GCAGAAGAGAGGCAGAAGGTC 60.405 57.143 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2346 3702 1.507141 GCCCATTTCCGCCTATCACG 61.507 60.000 0.00 0.00 0.00 4.35 R
3223 4622 0.096976 CGCGCAACAATACAAGGAGG 59.903 55.000 8.75 0.00 0.00 4.30 R
3240 4639 0.994263 GTGGAAATTTGATGCAGCGC 59.006 50.000 0.00 0.00 0.00 5.92 R
5024 6626 0.903942 CCTTCTGCCTCTCTTCTGCT 59.096 55.000 0.00 0.00 0.00 4.24 R
5045 6647 1.570967 CATGACAGTGCGTGGTGTG 59.429 57.895 0.00 0.00 0.00 3.82 R
5115 6717 3.507233 ACAGCACCAACATCATTTACCAG 59.493 43.478 0.00 0.00 0.00 4.00 R
6231 7978 0.519961 AAAACTGCACCGGAATACGC 59.480 50.000 9.46 2.74 42.52 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.991388 GTAACAACTTTGTAGTGATTGTAACAA 57.009 29.630 0.00 0.00 41.31 2.83
57 58 8.516234 ACAACTTTGTAGTGATTGTAACAACAA 58.484 29.630 0.00 0.00 40.16 2.83
100 101 6.927416 AGCAAAGATCAATATGAACAAAGCA 58.073 32.000 0.00 0.00 0.00 3.91
123 124 3.285484 AGGCATTGAATCAGTGATGGAC 58.715 45.455 10.02 2.59 0.00 4.02
133 134 6.714356 TGAATCAGTGATGGACATTTGTGTTA 59.286 34.615 6.34 0.00 0.00 2.41
285 286 9.946165 CTATTATTGAGGAATAAAACCGAAACC 57.054 33.333 0.00 0.00 37.53 3.27
286 287 4.752661 TTGAGGAATAAAACCGAAACCG 57.247 40.909 0.00 0.00 0.00 4.44
287 288 4.005487 TGAGGAATAAAACCGAAACCGA 57.995 40.909 0.00 0.00 0.00 4.69
288 289 4.387598 TGAGGAATAAAACCGAAACCGAA 58.612 39.130 0.00 0.00 0.00 4.30
289 290 4.820716 TGAGGAATAAAACCGAAACCGAAA 59.179 37.500 0.00 0.00 0.00 3.46
304 305 4.664150 ACCGAAAATTGCTTTTGAAGGA 57.336 36.364 0.00 0.00 34.73 3.36
305 306 5.017294 ACCGAAAATTGCTTTTGAAGGAA 57.983 34.783 0.00 0.00 43.14 3.36
334 335 2.242882 AGAGGCCTCCATTTGCAAAT 57.757 45.000 29.54 18.99 0.00 2.32
336 337 2.498885 AGAGGCCTCCATTTGCAAATTC 59.501 45.455 29.54 14.55 0.00 2.17
337 338 2.234414 GAGGCCTCCATTTGCAAATTCA 59.766 45.455 23.19 10.37 0.00 2.57
338 339 2.841881 AGGCCTCCATTTGCAAATTCAT 59.158 40.909 21.95 0.00 0.00 2.57
344 345 7.190871 GCCTCCATTTGCAAATTCATAAAATG 58.809 34.615 21.95 9.08 37.76 2.32
426 430 8.402798 TGTACATGTGTGTAAATTTTGAGGAT 57.597 30.769 9.11 0.00 42.18 3.24
447 451 5.357032 GGATGAAATACGTTGAAATGAGGGT 59.643 40.000 0.00 0.00 0.00 4.34
594 1011 9.507280 CTTGTATACTTGCATGTATTTTTCAGG 57.493 33.333 25.10 16.52 35.14 3.86
599 1016 9.777297 ATACTTGCATGTATTTTTCAGGTTTTT 57.223 25.926 17.17 0.00 29.70 1.94
670 1095 1.826054 CACCAAAACGCCCCACTCA 60.826 57.895 0.00 0.00 0.00 3.41
688 1113 7.256511 CCCCACTCAAATAAAACCCACTATTTT 60.257 37.037 0.00 0.00 33.85 1.82
689 1114 8.154203 CCCACTCAAATAAAACCCACTATTTTT 58.846 33.333 0.00 0.00 31.79 1.94
715 1140 6.310224 CACAACAAAAAGGAAAACAATCTCGT 59.690 34.615 0.00 0.00 0.00 4.18
748 1176 3.832490 GCCAAAGAAACTATCAAAGGGGT 59.168 43.478 0.00 0.00 0.00 4.95
817 1251 6.854778 GTCCTCTACCACTTACTCTAAACTG 58.145 44.000 0.00 0.00 0.00 3.16
820 1262 7.393796 TCCTCTACCACTTACTCTAAACTGAAG 59.606 40.741 0.00 0.00 0.00 3.02
843 1285 2.869101 AAACTCTCTTGAGCTTCCCC 57.131 50.000 0.00 0.00 43.85 4.81
850 1292 3.054802 TCTCTTGAGCTTCCCCAGAATTC 60.055 47.826 0.00 0.00 0.00 2.17
852 1294 3.054802 TCTTGAGCTTCCCCAGAATTCTC 60.055 47.826 4.57 0.00 34.55 2.87
853 1295 2.555664 TGAGCTTCCCCAGAATTCTCT 58.444 47.619 4.57 0.00 34.82 3.10
854 1296 2.503356 TGAGCTTCCCCAGAATTCTCTC 59.497 50.000 4.57 7.95 34.82 3.20
856 1298 2.504996 AGCTTCCCCAGAATTCTCTCTG 59.495 50.000 4.57 0.00 42.19 3.35
865 1307 2.303022 AGAATTCTCTCTGTCGCCCAAA 59.697 45.455 0.88 0.00 0.00 3.28
866 1308 2.859165 ATTCTCTCTGTCGCCCAAAA 57.141 45.000 0.00 0.00 0.00 2.44
868 1310 2.859165 TCTCTCTGTCGCCCAAAATT 57.141 45.000 0.00 0.00 0.00 1.82
870 1312 3.486383 TCTCTCTGTCGCCCAAAATTTT 58.514 40.909 0.00 0.00 0.00 1.82
871 1313 3.502211 TCTCTCTGTCGCCCAAAATTTTC 59.498 43.478 0.00 0.00 0.00 2.29
873 1315 1.268352 TCTGTCGCCCAAAATTTTCGG 59.732 47.619 9.98 9.98 0.00 4.30
914 1373 1.102978 CATTACAAAAGGAGCCCCCG 58.897 55.000 0.00 0.00 40.87 5.73
927 1386 2.266055 CCCCGGCTCACAGAGTTC 59.734 66.667 0.00 0.00 31.39 3.01
935 1395 2.597520 GCTCACAGAGTTCTTACCGTC 58.402 52.381 0.00 0.00 31.39 4.79
973 1438 1.846124 GAACTCACCACCTCCCCCA 60.846 63.158 0.00 0.00 0.00 4.96
974 1439 2.125766 GAACTCACCACCTCCCCCAC 62.126 65.000 0.00 0.00 0.00 4.61
987 1471 3.055719 CCCACACACACCGCCATC 61.056 66.667 0.00 0.00 0.00 3.51
988 1472 2.032528 CCACACACACCGCCATCT 59.967 61.111 0.00 0.00 0.00 2.90
1211 1695 0.760945 CCGTCCCCTCCATAAGAGCT 60.761 60.000 0.00 0.00 41.74 4.09
1255 1745 1.220529 CCGGGATGTGAATGTGATCG 58.779 55.000 0.00 0.00 0.00 3.69
1450 1940 1.736586 CTACGAGCTCGAGGCCATT 59.263 57.895 40.58 19.88 43.02 3.16
1456 1946 2.515523 CTCGAGGCCATTGCTGGG 60.516 66.667 5.01 0.00 43.36 4.45
1902 3176 0.652592 CGCCAGATGGAAAGTAAGCG 59.347 55.000 2.18 0.00 37.39 4.68
2075 3369 3.129813 TCCATGCTTGTTTGATCAGATGC 59.870 43.478 0.00 0.00 0.00 3.91
2171 3469 5.329035 ACTACATTTGGCATGCTTTAAGG 57.671 39.130 18.92 12.88 0.00 2.69
2269 3625 3.960755 TGGATCCATTATCACAGACTCGT 59.039 43.478 11.44 0.00 36.20 4.18
2270 3626 5.137551 TGGATCCATTATCACAGACTCGTA 58.862 41.667 11.44 0.00 36.20 3.43
2314 3670 0.908198 TGCCAAGGCCTTTTTGTGTT 59.092 45.000 17.61 0.00 41.09 3.32
2612 3968 6.809196 GGATACATTAGCCGAGACTAAATGAG 59.191 42.308 0.00 0.00 35.82 2.90
2781 4138 5.977635 ACCATCTCATCAAACAACTCGATA 58.022 37.500 0.00 0.00 0.00 2.92
3150 4549 5.221541 GGTTACTATGATAGGAAGCTGCACT 60.222 44.000 17.15 0.00 42.44 4.40
3151 4550 4.333913 ACTATGATAGGAAGCTGCACTG 57.666 45.455 1.02 0.00 0.00 3.66
3223 4622 5.613358 ACTTGCAACAGTATTCTTACAGC 57.387 39.130 0.00 0.00 0.00 4.40
3240 4639 1.131126 CAGCCTCCTTGTATTGTTGCG 59.869 52.381 0.00 0.00 0.00 4.85
3533 4997 1.380380 CCCAACTCTTGCCATCCCC 60.380 63.158 0.00 0.00 0.00 4.81
3821 5286 3.568007 TGTCAAGCCGCATTTACTCTTTT 59.432 39.130 0.00 0.00 0.00 2.27
3845 5310 8.118773 TTGGTACACAACAGTTATGGCACAAG 62.119 42.308 0.00 0.00 40.60 3.16
3996 5461 1.774110 ATTTGTGTGTTGTGGCTGGA 58.226 45.000 0.00 0.00 0.00 3.86
4093 5659 8.638629 ACACAGTAGTTTTGTCTCTATACTCT 57.361 34.615 0.00 0.00 0.00 3.24
4239 5806 3.197766 TCTCTGATAAACGGTGCTTGGAT 59.802 43.478 0.00 0.00 0.00 3.41
4291 5884 9.877178 TTTTATTAAAATGTAATTCATGGGCGT 57.123 25.926 0.00 0.00 33.67 5.68
4374 5967 7.510549 TGCTTTCCTTTATCATATAAGGTGC 57.489 36.000 0.00 0.00 41.36 5.01
4835 6429 6.126409 TGACCCAAATAGCCTTTTCGATATT 58.874 36.000 0.00 0.00 0.00 1.28
4920 6514 7.778382 ACAGATACAAGAAGTTAAAGGTTTGGT 59.222 33.333 0.00 0.00 0.00 3.67
4937 6532 6.839134 AGGTTTGGTTTCTTTCTGGAATTACT 59.161 34.615 0.00 0.00 0.00 2.24
4962 6557 9.868277 CTCCTATTCTTATAGCTTTCCTATGTG 57.132 37.037 0.00 0.00 37.34 3.21
4966 6561 7.676683 TTCTTATAGCTTTCCTATGTGTCCT 57.323 36.000 0.00 0.00 37.34 3.85
4987 6582 9.396022 TGTCCTTTAGATGGAAAATATTCAGTC 57.604 33.333 0.00 0.00 37.29 3.51
5003 6603 2.815478 CAGTCGTCCTGAAATAGGCTC 58.185 52.381 0.00 0.00 46.87 4.70
5023 6625 5.758296 GGCTCGTATCATGTTAGGAAATGAA 59.242 40.000 7.42 0.00 36.44 2.57
5024 6626 6.260050 GGCTCGTATCATGTTAGGAAATGAAA 59.740 38.462 7.42 0.00 36.44 2.69
5045 6647 1.405391 GCAGAAGAGAGGCAGAAGGTC 60.405 57.143 0.00 0.00 0.00 3.85
5115 6717 8.082242 ACACCAATGCTAAAAGAATAGTGAAAC 58.918 33.333 0.00 0.00 27.85 2.78
5232 6834 7.107542 GCAATTGCCATCCAATCCAAATATAT 58.892 34.615 20.06 0.00 43.22 0.86
5233 6835 8.259411 GCAATTGCCATCCAATCCAAATATATA 58.741 33.333 20.06 0.00 43.22 0.86
5374 6976 1.085091 CAGTGGCTGAAGTGCTCATC 58.915 55.000 0.00 0.00 32.44 2.92
5638 7339 5.452777 CGCGTTATTCTCACTATCAGATGA 58.547 41.667 0.00 0.00 0.00 2.92
5768 7472 2.025887 TCTCTTGGATTCCCTTGAAGGC 60.026 50.000 5.50 0.00 32.73 4.35
5961 7693 8.715191 TTTGCTGAATGTTTAACTCATGTTTT 57.285 26.923 0.00 0.00 37.59 2.43
6226 7973 2.968675 AGCAACGTACGAAGCCTATTT 58.031 42.857 24.41 5.97 0.00 1.40
6227 7974 3.332034 AGCAACGTACGAAGCCTATTTT 58.668 40.909 24.41 5.27 0.00 1.82
6228 7975 3.124636 AGCAACGTACGAAGCCTATTTTG 59.875 43.478 24.41 13.19 0.00 2.44
6229 7976 3.120442 GCAACGTACGAAGCCTATTTTGT 60.120 43.478 24.41 0.00 0.00 2.83
6230 7977 4.612033 GCAACGTACGAAGCCTATTTTGTT 60.612 41.667 24.41 0.00 0.00 2.83
6231 7978 4.657075 ACGTACGAAGCCTATTTTGTTG 57.343 40.909 24.41 0.00 0.00 3.33
6232 7979 3.120442 ACGTACGAAGCCTATTTTGTTGC 60.120 43.478 24.41 0.00 0.00 4.17
6233 7980 2.611974 ACGAAGCCTATTTTGTTGCG 57.388 45.000 0.00 0.00 0.00 4.85
6234 7981 1.877443 ACGAAGCCTATTTTGTTGCGT 59.123 42.857 0.00 0.00 0.00 5.24
6235 7982 3.068560 ACGAAGCCTATTTTGTTGCGTA 58.931 40.909 0.00 0.00 0.00 4.42
6236 7983 3.687698 ACGAAGCCTATTTTGTTGCGTAT 59.312 39.130 0.00 0.00 0.00 3.06
6237 7984 4.155280 ACGAAGCCTATTTTGTTGCGTATT 59.845 37.500 0.00 0.00 0.00 1.89
6241 7988 3.790789 GCCTATTTTGTTGCGTATTCCGG 60.791 47.826 0.00 0.00 36.94 5.14
6266 8013 3.743396 CAGTTTTGAGAAGAACTAGCGCT 59.257 43.478 17.26 17.26 34.52 5.92
6312 8059 3.181443 CCCATAGGAGAGCCCGTTTTAAT 60.181 47.826 0.00 0.00 40.87 1.40
6401 8149 8.250538 ACAGTTTTTGTTTGGTGAATAGTTTG 57.749 30.769 0.00 0.00 36.31 2.93
6501 8262 7.767261 TGCTCTCTTCTCATTAGAAACTACTC 58.233 38.462 0.00 0.00 41.19 2.59
6503 8264 7.648039 TCTCTTCTCATTAGAAACTACTCCC 57.352 40.000 0.00 0.00 41.19 4.30
6504 8265 6.608002 TCTCTTCTCATTAGAAACTACTCCCC 59.392 42.308 0.00 0.00 41.19 4.81
6523 8284 4.482952 CCCCCGTTCCATAATATAGGAC 57.517 50.000 0.00 0.00 32.62 3.85
6524 8285 3.118884 CCCCCGTTCCATAATATAGGACG 60.119 52.174 0.00 0.00 32.62 4.79
6525 8286 3.512724 CCCCGTTCCATAATATAGGACGT 59.487 47.826 0.00 0.00 32.62 4.34
6526 8287 4.020839 CCCCGTTCCATAATATAGGACGTT 60.021 45.833 0.00 0.00 32.62 3.99
6527 8288 5.511888 CCCCGTTCCATAATATAGGACGTTT 60.512 44.000 0.00 0.00 32.62 3.60
6528 8289 5.993441 CCCGTTCCATAATATAGGACGTTTT 59.007 40.000 0.00 0.00 32.62 2.43
6529 8290 6.484308 CCCGTTCCATAATATAGGACGTTTTT 59.516 38.462 0.00 0.00 32.62 1.94
6587 8348 2.983192 TGGGACAAAGGGAGTACAATCA 59.017 45.455 0.00 0.00 31.92 2.57
6617 8378 6.435292 AATAAAGAGTCACAACACCTAGGT 57.565 37.500 9.21 9.21 0.00 3.08
6636 8397 7.553044 ACCTAGGTTGCAATTAGTAACTGATTC 59.447 37.037 9.21 0.00 41.84 2.52
6727 8488 3.269592 TCCCTCCTGGTAGAGTTTTGA 57.730 47.619 0.00 0.00 34.77 2.69
6732 8493 4.141824 CCTCCTGGTAGAGTTTTGATCCTC 60.142 50.000 0.00 0.00 31.53 3.71
6768 8529 3.893089 AGTCCTTGACTCCCTCCAA 57.107 52.632 0.00 0.00 38.71 3.53
6781 8542 1.570501 CCCTCCAATCAATCTTCCCCA 59.429 52.381 0.00 0.00 0.00 4.96
6789 8550 2.492025 TCAATCTTCCCCACAGGCTAT 58.508 47.619 0.00 0.00 34.51 2.97
6793 8554 1.292242 TCTTCCCCACAGGCTATCTCT 59.708 52.381 0.00 0.00 34.51 3.10
6809 8570 1.410517 TCTCTGCTCGGGCTGATTAAG 59.589 52.381 17.82 6.07 43.52 1.85
6821 8582 1.494721 CTGATTAAGGGGCAGCCCTAA 59.505 52.381 30.52 21.19 44.66 2.69
6822 8583 1.494721 TGATTAAGGGGCAGCCCTAAG 59.505 52.381 30.52 0.00 44.66 2.18
6861 8622 4.498345 GGTGCGGACAAAATCACTGTTTTA 60.498 41.667 9.96 0.00 30.56 1.52
6900 8661 0.038343 CACAAAATGAACCCCGCTGG 60.038 55.000 0.00 0.00 41.37 4.85
6926 8687 6.272822 ACTTTAGCATGATTTGACCCTTTC 57.727 37.500 0.00 0.00 0.00 2.62
6944 8705 8.133024 ACCCTTTCTAAAAATGCACAATATCA 57.867 30.769 0.00 0.00 0.00 2.15
7021 8782 0.251354 AGCATCAGCCACCACTACAG 59.749 55.000 0.00 0.00 43.56 2.74
7067 8828 1.028130 TGCACAAAGATGAAACGCCA 58.972 45.000 0.00 0.00 0.00 5.69
7074 8835 4.759693 ACAAAGATGAAACGCCATGAACTA 59.240 37.500 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.550406 TTGCTAAGTTACTACTATTGTTGTTGT 57.450 29.630 0.00 0.00 34.32 3.32
57 58 9.991906 TCTTTGCTAAGTTACTACTATTGTTGT 57.008 29.630 7.77 0.09 33.17 3.32
100 101 5.068636 GTCCATCACTGATTCAATGCCTAT 58.931 41.667 0.00 0.00 0.00 2.57
110 111 6.942005 TCTAACACAAATGTCCATCACTGATT 59.058 34.615 0.00 0.00 38.45 2.57
155 156 3.508402 TGTGTATCGCTCTAGGTTGTGAA 59.492 43.478 0.00 0.00 0.00 3.18
284 285 5.288804 TCTTCCTTCAAAAGCAATTTTCGG 58.711 37.500 0.00 0.00 0.00 4.30
285 286 5.107722 GCTCTTCCTTCAAAAGCAATTTTCG 60.108 40.000 0.00 0.00 33.21 3.46
286 287 5.987953 AGCTCTTCCTTCAAAAGCAATTTTC 59.012 36.000 0.00 0.00 35.42 2.29
287 288 5.922053 AGCTCTTCCTTCAAAAGCAATTTT 58.078 33.333 0.00 0.00 35.42 1.82
288 289 5.510349 GGAGCTCTTCCTTCAAAAGCAATTT 60.510 40.000 14.64 0.00 43.16 1.82
289 290 4.021632 GGAGCTCTTCCTTCAAAAGCAATT 60.022 41.667 14.64 0.00 43.16 2.32
304 305 1.715785 GAGGCCTCTATGGAGCTCTT 58.284 55.000 26.25 4.28 38.21 2.85
305 306 0.178935 GGAGGCCTCTATGGAGCTCT 60.179 60.000 31.36 6.45 38.21 4.09
315 316 2.242882 ATTTGCAAATGGAGGCCTCT 57.757 45.000 31.36 11.02 0.00 3.69
378 380 6.712095 ACATTATGCCTCCATGTATAACTGTG 59.288 38.462 0.00 0.00 32.85 3.66
426 430 5.533154 ACAACCCTCATTTCAACGTATTTCA 59.467 36.000 0.00 0.00 0.00 2.69
447 451 2.303022 TGTTGAAAAACCCCTTGCACAA 59.697 40.909 0.00 0.00 0.00 3.33
623 1040 3.702792 TCCATGGAGCCCGAAAATAAAA 58.297 40.909 11.44 0.00 0.00 1.52
627 1044 1.474330 GTTCCATGGAGCCCGAAAAT 58.526 50.000 17.35 0.00 0.00 1.82
670 1095 9.892130 TGTTGTGAAAAATAGTGGGTTTTATTT 57.108 25.926 0.00 0.00 32.40 1.40
688 1113 7.062839 CGAGATTGTTTTCCTTTTTGTTGTGAA 59.937 33.333 0.00 0.00 0.00 3.18
689 1114 6.529829 CGAGATTGTTTTCCTTTTTGTTGTGA 59.470 34.615 0.00 0.00 0.00 3.58
707 1132 3.751175 TGGCTCCTTGTTTTACGAGATTG 59.249 43.478 0.00 0.00 31.05 2.67
715 1140 7.504238 TGATAGTTTCTTTGGCTCCTTGTTTTA 59.496 33.333 0.00 0.00 0.00 1.52
748 1176 1.440938 CGTCGGTTGTTTTCTGGGCA 61.441 55.000 0.00 0.00 0.00 5.36
825 1267 1.627834 CTGGGGAAGCTCAAGAGAGTT 59.372 52.381 0.32 0.00 44.00 3.01
826 1268 1.203237 TCTGGGGAAGCTCAAGAGAGT 60.203 52.381 0.32 0.00 44.00 3.24
827 1269 1.566211 TCTGGGGAAGCTCAAGAGAG 58.434 55.000 0.32 0.00 44.96 3.20
850 1292 3.667960 CGAAAATTTTGGGCGACAGAGAG 60.668 47.826 8.47 0.00 0.00 3.20
852 1294 2.584791 CGAAAATTTTGGGCGACAGAG 58.415 47.619 8.47 0.00 0.00 3.35
853 1295 1.268352 CCGAAAATTTTGGGCGACAGA 59.732 47.619 17.63 0.00 0.00 3.41
854 1296 1.268352 TCCGAAAATTTTGGGCGACAG 59.732 47.619 23.11 3.32 36.17 3.51
856 1298 2.526077 GATCCGAAAATTTTGGGCGAC 58.474 47.619 23.11 14.12 36.17 5.19
865 1307 2.678336 GAGAGCAACGGATCCGAAAATT 59.322 45.455 39.55 20.89 42.83 1.82
866 1308 2.280628 GAGAGCAACGGATCCGAAAAT 58.719 47.619 39.55 21.86 42.83 1.82
868 1310 0.108329 GGAGAGCAACGGATCCGAAA 60.108 55.000 39.55 0.00 42.83 3.46
870 1312 2.423898 GGGAGAGCAACGGATCCGA 61.424 63.158 39.55 0.00 42.83 4.55
871 1313 2.107141 GGGAGAGCAACGGATCCG 59.893 66.667 32.20 32.20 46.03 4.18
873 1315 1.153349 GTGGGGAGAGCAACGGATC 60.153 63.158 0.00 0.00 0.00 3.36
914 1373 1.272769 ACGGTAAGAACTCTGTGAGCC 59.727 52.381 0.00 0.00 32.04 4.70
916 1375 2.094649 GGGACGGTAAGAACTCTGTGAG 60.095 54.545 0.00 0.00 35.52 3.51
917 1376 1.891150 GGGACGGTAAGAACTCTGTGA 59.109 52.381 0.00 0.00 0.00 3.58
919 1378 1.264295 GGGGACGGTAAGAACTCTGT 58.736 55.000 0.00 0.00 0.00 3.41
921 1380 2.249309 ATGGGGACGGTAAGAACTCT 57.751 50.000 0.00 0.00 0.00 3.24
922 1381 2.737679 CGAATGGGGACGGTAAGAACTC 60.738 54.545 0.00 0.00 0.00 3.01
923 1382 1.206371 CGAATGGGGACGGTAAGAACT 59.794 52.381 0.00 0.00 0.00 3.01
924 1383 1.648504 CGAATGGGGACGGTAAGAAC 58.351 55.000 0.00 0.00 0.00 3.01
925 1384 0.538118 CCGAATGGGGACGGTAAGAA 59.462 55.000 0.00 0.00 0.00 2.52
927 1386 0.461339 CACCGAATGGGGACGGTAAG 60.461 60.000 10.74 0.00 43.62 2.34
973 1438 2.347490 GGAGATGGCGGTGTGTGT 59.653 61.111 0.00 0.00 0.00 3.72
974 1439 2.436646 GGGAGATGGCGGTGTGTG 60.437 66.667 0.00 0.00 0.00 3.82
987 1471 2.903357 CTCATCGTGGGGTGGGAG 59.097 66.667 0.00 0.00 0.00 4.30
988 1472 3.399181 GCTCATCGTGGGGTGGGA 61.399 66.667 0.00 0.00 0.00 4.37
1008 1492 3.423154 GGCTTCACCTTGTCCGCG 61.423 66.667 0.00 0.00 34.51 6.46
1198 1682 0.599728 GCGAGCAGCTCTTATGGAGG 60.600 60.000 20.39 3.20 44.04 4.30
1255 1745 2.062519 ACAAACGCACACAAAAACACC 58.937 42.857 0.00 0.00 0.00 4.16
1456 1946 1.373570 AGCTTTATTCGCTGACCTGC 58.626 50.000 0.00 0.00 36.15 4.85
1462 1952 5.034554 TCAGTCAAAAGCTTTATTCGCTG 57.965 39.130 13.10 15.23 37.87 5.18
1533 2806 4.186926 CGCATCTCTCTCCTGAATTCAAA 58.813 43.478 9.88 0.00 0.00 2.69
1769 3042 8.961634 ACAGCAAAGCTATTATCGAGATCTATA 58.038 33.333 0.00 0.00 36.40 1.31
1770 3043 7.835822 ACAGCAAAGCTATTATCGAGATCTAT 58.164 34.615 0.00 0.00 36.40 1.98
1845 3119 5.560183 GCCGAAAAATCTGATTGGGTATACG 60.560 44.000 3.22 4.15 0.00 3.06
1902 3176 3.452627 ACTTGTCCAGGTGTCCATCTATC 59.547 47.826 0.00 0.00 0.00 2.08
2034 3325 6.661377 GCATGGAGTACAGAAGATCCTAGATA 59.339 42.308 0.00 0.00 32.79 1.98
2100 3397 5.446143 TTCATACACGCTCAACCAAATTT 57.554 34.783 0.00 0.00 0.00 1.82
2103 3400 4.068599 TCATTCATACACGCTCAACCAAA 58.931 39.130 0.00 0.00 0.00 3.28
2171 3469 4.926238 CCAGTCTGATGTACAACAACTCTC 59.074 45.833 7.28 0.00 0.00 3.20
2314 3670 8.579850 AGCAAACAAATGTATCAATTAGAGGA 57.420 30.769 0.00 0.00 0.00 3.71
2346 3702 1.507141 GCCCATTTCCGCCTATCACG 61.507 60.000 0.00 0.00 0.00 4.35
2612 3968 2.550830 TCACAAAGTGGAAGGCTCTC 57.449 50.000 0.00 0.00 33.87 3.20
2744 4101 2.673368 GAGATGGTTAGTGCGTGGAAAG 59.327 50.000 0.00 0.00 0.00 2.62
2893 4255 8.874156 AGGCATTGATAACAGATAACAGATAGA 58.126 33.333 0.00 0.00 0.00 1.98
3223 4622 0.096976 CGCGCAACAATACAAGGAGG 59.903 55.000 8.75 0.00 0.00 4.30
3240 4639 0.994263 GTGGAAATTTGATGCAGCGC 59.006 50.000 0.00 0.00 0.00 5.92
3533 4997 3.496130 CCATAAGCAACCTCATTAGCTCG 59.504 47.826 0.00 0.00 36.07 5.03
3821 5286 3.142951 GTGCCATAACTGTTGTGTACCA 58.857 45.455 14.81 7.27 0.00 3.25
3996 5461 7.500892 TGGCAATGAAATAAGAATACCGTATGT 59.499 33.333 0.00 0.00 0.00 2.29
4093 5659 8.472007 AAAGACAATGTAAAATGGTCCAGTAA 57.528 30.769 0.00 0.00 0.00 2.24
4224 5790 1.074084 TGGGAATCCAAGCACCGTTTA 59.926 47.619 0.09 0.00 40.73 2.01
4239 5806 9.474313 AAATCTTAGCAAGTACAATAATGGGAA 57.526 29.630 0.00 0.00 0.00 3.97
4283 5876 4.414852 CAGAACTAATTGAAACGCCCATG 58.585 43.478 0.00 0.00 0.00 3.66
4291 5884 6.169094 CAGAGAGCTCCAGAACTAATTGAAA 58.831 40.000 10.93 0.00 0.00 2.69
4368 5961 6.010219 AGTAAACTTCATTATGGTGCACCTT 58.990 36.000 34.75 30.09 36.82 3.50
4835 6429 4.750952 TTCGTGGATGCGTTTAATTTGA 57.249 36.364 0.00 0.00 0.00 2.69
4937 6532 9.381038 ACACATAGGAAAGCTATAAGAATAGGA 57.619 33.333 0.00 0.00 36.37 2.94
4955 6550 9.799106 ATATTTTCCATCTAAAGGACACATAGG 57.201 33.333 0.00 0.00 34.19 2.57
4962 6557 8.552034 CGACTGAATATTTTCCATCTAAAGGAC 58.448 37.037 0.00 0.00 34.19 3.85
4966 6561 8.265055 AGGACGACTGAATATTTTCCATCTAAA 58.735 33.333 0.00 0.00 0.00 1.85
5003 6603 7.011389 TCTGCTTTCATTTCCTAACATGATACG 59.989 37.037 0.00 0.00 29.45 3.06
5023 6625 1.278699 CCTTCTGCCTCTCTTCTGCTT 59.721 52.381 0.00 0.00 0.00 3.91
5024 6626 0.903942 CCTTCTGCCTCTCTTCTGCT 59.096 55.000 0.00 0.00 0.00 4.24
5045 6647 1.570967 CATGACAGTGCGTGGTGTG 59.429 57.895 0.00 0.00 0.00 3.82
5115 6717 3.507233 ACAGCACCAACATCATTTACCAG 59.493 43.478 0.00 0.00 0.00 4.00
5638 7339 9.155975 CATAGTGTAACAAAGAAGTCAATAGCT 57.844 33.333 0.00 0.00 41.43 3.32
5645 7346 6.647067 ACTGCTCATAGTGTAACAAAGAAGTC 59.353 38.462 0.00 0.00 41.43 3.01
5768 7472 0.039256 CACGCCCAAATCCAGTGTTG 60.039 55.000 0.00 0.00 0.00 3.33
5961 7693 4.705110 TTTCTTCTTGTCCCTGTCATGA 57.295 40.909 0.00 0.00 0.00 3.07
6226 7973 0.885150 TGCACCGGAATACGCAACAA 60.885 50.000 9.46 0.00 42.52 2.83
6227 7974 1.295357 CTGCACCGGAATACGCAACA 61.295 55.000 9.46 0.00 42.52 3.33
6228 7975 1.296056 ACTGCACCGGAATACGCAAC 61.296 55.000 9.46 0.00 42.52 4.17
6229 7976 0.604243 AACTGCACCGGAATACGCAA 60.604 50.000 9.46 0.00 42.52 4.85
6230 7977 0.604243 AAACTGCACCGGAATACGCA 60.604 50.000 9.46 7.79 42.52 5.24
6231 7978 0.519961 AAAACTGCACCGGAATACGC 59.480 50.000 9.46 2.74 42.52 4.42
6232 7979 1.801771 TCAAAACTGCACCGGAATACG 59.198 47.619 9.46 0.00 43.80 3.06
6233 7980 3.071479 TCTCAAAACTGCACCGGAATAC 58.929 45.455 9.46 0.00 0.00 1.89
6234 7981 3.410631 TCTCAAAACTGCACCGGAATA 57.589 42.857 9.46 0.00 0.00 1.75
6235 7982 2.270352 TCTCAAAACTGCACCGGAAT 57.730 45.000 9.46 0.00 0.00 3.01
6236 7983 1.946768 CTTCTCAAAACTGCACCGGAA 59.053 47.619 9.46 0.00 0.00 4.30
6237 7984 1.140052 TCTTCTCAAAACTGCACCGGA 59.860 47.619 9.46 0.00 0.00 5.14
6241 7988 4.609336 CGCTAGTTCTTCTCAAAACTGCAC 60.609 45.833 0.00 0.00 36.44 4.57
6317 8064 9.823647 TTTATTTCTTTAACAAAATGAGCACCA 57.176 25.926 5.04 0.00 0.00 4.17
6503 8264 3.512724 ACGTCCTATATTATGGAACGGGG 59.487 47.826 4.04 0.00 34.05 5.73
6504 8265 4.796038 ACGTCCTATATTATGGAACGGG 57.204 45.455 4.04 0.00 34.05 5.28
6550 8311 8.899771 CCTTTGTCCCATAATATAAGACGTTTT 58.100 33.333 0.00 0.00 0.00 2.43
6551 8312 7.501225 CCCTTTGTCCCATAATATAAGACGTTT 59.499 37.037 0.00 0.00 0.00 3.60
6552 8313 6.996282 CCCTTTGTCCCATAATATAAGACGTT 59.004 38.462 0.00 0.00 0.00 3.99
6553 8314 6.328148 TCCCTTTGTCCCATAATATAAGACGT 59.672 38.462 0.00 0.00 0.00 4.34
6554 8315 6.765403 TCCCTTTGTCCCATAATATAAGACG 58.235 40.000 0.00 0.00 0.00 4.18
6555 8316 7.746703 ACTCCCTTTGTCCCATAATATAAGAC 58.253 38.462 0.00 0.00 0.00 3.01
6556 8317 7.947782 ACTCCCTTTGTCCCATAATATAAGA 57.052 36.000 0.00 0.00 0.00 2.10
6557 8318 8.656806 TGTACTCCCTTTGTCCCATAATATAAG 58.343 37.037 0.00 0.00 0.00 1.73
6558 8319 8.570038 TGTACTCCCTTTGTCCCATAATATAA 57.430 34.615 0.00 0.00 0.00 0.98
6559 8320 8.570038 TTGTACTCCCTTTGTCCCATAATATA 57.430 34.615 0.00 0.00 0.00 0.86
6560 8321 7.460214 TTGTACTCCCTTTGTCCCATAATAT 57.540 36.000 0.00 0.00 0.00 1.28
6561 8322 6.894735 TTGTACTCCCTTTGTCCCATAATA 57.105 37.500 0.00 0.00 0.00 0.98
6562 8323 5.789574 TTGTACTCCCTTTGTCCCATAAT 57.210 39.130 0.00 0.00 0.00 1.28
6563 8324 5.251932 TGATTGTACTCCCTTTGTCCCATAA 59.748 40.000 0.00 0.00 0.00 1.90
6564 8325 4.785914 TGATTGTACTCCCTTTGTCCCATA 59.214 41.667 0.00 0.00 0.00 2.74
6565 8326 3.591527 TGATTGTACTCCCTTTGTCCCAT 59.408 43.478 0.00 0.00 0.00 4.00
6566 8327 2.983192 TGATTGTACTCCCTTTGTCCCA 59.017 45.455 0.00 0.00 0.00 4.37
6567 8328 3.713826 TGATTGTACTCCCTTTGTCCC 57.286 47.619 0.00 0.00 0.00 4.46
6568 8329 6.177610 TGTATTGATTGTACTCCCTTTGTCC 58.822 40.000 0.00 0.00 0.00 4.02
6569 8330 7.865706 ATGTATTGATTGTACTCCCTTTGTC 57.134 36.000 0.00 0.00 0.00 3.18
6570 8331 9.920946 ATTATGTATTGATTGTACTCCCTTTGT 57.079 29.630 0.00 0.00 0.00 2.83
6587 8348 9.959721 AGGTGTTGTGACTCTTTATTATGTATT 57.040 29.630 0.00 0.00 0.00 1.89
6601 8362 1.488812 TGCAACCTAGGTGTTGTGACT 59.511 47.619 17.14 0.00 45.80 3.41
6684 8445 8.924303 GGGAAAAGGTTGGCTCTTTATTATTAT 58.076 33.333 0.00 0.00 33.80 1.28
6686 8447 6.959954 AGGGAAAAGGTTGGCTCTTTATTATT 59.040 34.615 0.00 0.00 33.80 1.40
6768 8529 1.302907 AGCCTGTGGGGAAGATTGAT 58.697 50.000 0.00 0.00 37.23 2.57
6781 8542 1.112315 CCCGAGCAGAGATAGCCTGT 61.112 60.000 0.00 0.00 34.29 4.00
6789 8550 1.410517 CTTAATCAGCCCGAGCAGAGA 59.589 52.381 0.00 0.00 43.56 3.10
6793 8554 1.526887 CCCTTAATCAGCCCGAGCA 59.473 57.895 0.00 0.00 43.56 4.26
6821 8582 4.729918 CAAGGCCGGGAAGCAGCT 62.730 66.667 2.18 0.00 0.00 4.24
6900 8661 6.272822 AGGGTCAAATCATGCTAAAGTTTC 57.727 37.500 0.00 0.00 0.00 2.78
6926 8687 8.706492 AACACCATGATATTGTGCATTTTTAG 57.294 30.769 0.00 0.00 33.30 1.85
6944 8705 3.941483 GCATAGTGTAGCAGAAACACCAT 59.059 43.478 2.90 0.00 46.77 3.55
7021 8782 2.675423 GGGTTGGCGTTTCTCCCC 60.675 66.667 0.00 0.00 32.66 4.81
7045 8806 1.447938 GCGTTTCATCTTTGTGCAACG 59.552 47.619 7.29 7.29 42.39 4.10
7067 8828 5.867716 GTCACTACGAAACACCATAGTTCAT 59.132 40.000 0.00 0.00 0.00 2.57
7074 8835 2.870435 GCTGGTCACTACGAAACACCAT 60.870 50.000 0.00 0.00 36.54 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.