Multiple sequence alignment - TraesCS3B01G396700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G396700 chr3B 100.000 3843 0 0 1 3843 625893146 625896988 0.000000e+00 7097
1 TraesCS3B01G396700 chr3D 87.794 3957 189 113 30 3775 471264647 471268520 0.000000e+00 4361
2 TraesCS3B01G396700 chr3A 85.940 3606 193 120 366 3765 613390495 613393992 0.000000e+00 3561
3 TraesCS3B01G396700 chr3A 93.536 263 13 3 1 260 613390188 613390449 4.660000e-104 388
4 TraesCS3B01G396700 chr7A 77.013 683 75 38 1884 2554 634342735 634342123 2.230000e-82 316
5 TraesCS3B01G396700 chr4A 80.556 252 40 6 1350 1592 701978353 701978604 6.560000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G396700 chr3B 625893146 625896988 3842 False 7097.0 7097 100.000 1 3843 1 chr3B.!!$F1 3842
1 TraesCS3B01G396700 chr3D 471264647 471268520 3873 False 4361.0 4361 87.794 30 3775 1 chr3D.!!$F1 3745
2 TraesCS3B01G396700 chr3A 613390188 613393992 3804 False 1974.5 3561 89.738 1 3765 2 chr3A.!!$F1 3764
3 TraesCS3B01G396700 chr7A 634342123 634342735 612 True 316.0 316 77.013 1884 2554 1 chr7A.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 792 0.035056 CCTTTGACCTCCAATCGGCT 60.035 55.0 0.00 0.00 34.23 5.52 F
740 794 0.391130 TTTGACCTCCAATCGGCTCG 60.391 55.0 0.00 0.00 34.23 5.03 F
1306 1420 0.541764 TTGGGTTGGCATCCCTGTTC 60.542 55.0 29.06 7.81 44.84 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2670 2847 0.040336 GCCTAACGCTGATCGATCGA 60.040 55.000 21.86 21.86 41.67 3.59 R
2689 2866 1.297304 ACGCACGCACAAAAGAACG 60.297 52.632 0.00 0.00 0.00 3.95 R
3262 3538 0.035458 AGGTAGCAGCACAAGTGGAC 59.965 55.000 2.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.302511 TGACGCCCAAGCTTCTTCC 60.303 57.895 0.00 0.00 38.09 3.46
115 116 3.961414 ATTTCGGTGGGGGCACGT 61.961 61.111 0.00 0.00 0.00 4.49
139 140 0.179067 TTCCGCGTGAAACCACTTCT 60.179 50.000 4.92 0.00 34.86 2.85
275 279 1.128692 GCACATTAGCTGAACGACCAC 59.871 52.381 0.00 0.00 0.00 4.16
283 287 0.661020 CTGAACGACCACCCAACAAC 59.339 55.000 0.00 0.00 0.00 3.32
286 290 2.897846 CGACCACCCAACAACGCA 60.898 61.111 0.00 0.00 0.00 5.24
287 291 2.473760 CGACCACCCAACAACGCAA 61.474 57.895 0.00 0.00 0.00 4.85
288 292 1.791103 CGACCACCCAACAACGCAAT 61.791 55.000 0.00 0.00 0.00 3.56
289 293 0.318614 GACCACCCAACAACGCAATG 60.319 55.000 0.00 0.00 0.00 2.82
290 294 1.040339 ACCACCCAACAACGCAATGT 61.040 50.000 0.00 0.00 34.24 2.71
291 295 0.955178 CCACCCAACAACGCAATGTA 59.045 50.000 0.00 0.00 32.02 2.29
292 296 1.335506 CCACCCAACAACGCAATGTAC 60.336 52.381 0.00 0.00 32.02 2.90
296 300 1.606668 CCAACAACGCAATGTACCAGT 59.393 47.619 0.00 0.00 32.02 4.00
312 316 4.653888 GTGGGTTGGGTCGGGTGG 62.654 72.222 0.00 0.00 0.00 4.61
434 447 1.599047 AGCCAGAAGGGATGACACG 59.401 57.895 0.00 0.00 40.01 4.49
435 448 0.904865 AGCCAGAAGGGATGACACGA 60.905 55.000 0.00 0.00 40.01 4.35
436 449 0.741221 GCCAGAAGGGATGACACGAC 60.741 60.000 0.00 0.00 40.01 4.34
437 450 0.458543 CCAGAAGGGATGACACGACG 60.459 60.000 0.00 0.00 40.01 5.12
438 451 1.078759 CAGAAGGGATGACACGACGC 61.079 60.000 0.00 0.00 0.00 5.19
472 494 0.108567 GAAACCTCTCCTCCAGACGC 60.109 60.000 0.00 0.00 0.00 5.19
541 570 4.385977 GGCCATGTTACCATACTTAACCCT 60.386 45.833 0.00 0.00 0.00 4.34
542 571 5.198207 GCCATGTTACCATACTTAACCCTT 58.802 41.667 0.00 0.00 0.00 3.95
616 647 1.729131 CACCACCGCAAACGCAATC 60.729 57.895 0.00 0.00 38.22 2.67
617 648 1.896660 ACCACCGCAAACGCAATCT 60.897 52.632 0.00 0.00 38.22 2.40
618 649 1.154225 CCACCGCAAACGCAATCTC 60.154 57.895 0.00 0.00 38.22 2.75
619 650 1.154225 CACCGCAAACGCAATCTCC 60.154 57.895 0.00 0.00 38.22 3.71
620 651 1.599518 ACCGCAAACGCAATCTCCA 60.600 52.632 0.00 0.00 38.22 3.86
621 652 0.960364 ACCGCAAACGCAATCTCCAT 60.960 50.000 0.00 0.00 38.22 3.41
622 653 0.248215 CCGCAAACGCAATCTCCATC 60.248 55.000 0.00 0.00 38.22 3.51
623 654 0.248215 CGCAAACGCAATCTCCATCC 60.248 55.000 0.00 0.00 0.00 3.51
624 655 0.810648 GCAAACGCAATCTCCATCCA 59.189 50.000 0.00 0.00 0.00 3.41
625 656 1.406539 GCAAACGCAATCTCCATCCAT 59.593 47.619 0.00 0.00 0.00 3.41
626 657 2.797087 GCAAACGCAATCTCCATCCATG 60.797 50.000 0.00 0.00 0.00 3.66
636 667 3.174987 CATCCATGGCCCGGGGTA 61.175 66.667 25.28 4.66 0.00 3.69
637 668 2.369015 ATCCATGGCCCGGGGTAA 60.369 61.111 25.28 3.35 0.00 2.85
641 672 1.000145 CATGGCCCGGGGTAAAACT 60.000 57.895 25.28 0.00 0.00 2.66
677 714 2.261430 AATTCGCCCGGGGGTAACTC 62.261 60.000 34.23 9.74 37.65 3.01
717 771 0.329931 TAAACCACCCGCACATCCAT 59.670 50.000 0.00 0.00 0.00 3.41
732 786 1.753903 TCCATCCCTTTGACCTCCAA 58.246 50.000 0.00 0.00 0.00 3.53
733 787 2.287584 TCCATCCCTTTGACCTCCAAT 58.712 47.619 0.00 0.00 34.23 3.16
734 788 2.242196 TCCATCCCTTTGACCTCCAATC 59.758 50.000 0.00 0.00 34.23 2.67
735 789 2.292267 CATCCCTTTGACCTCCAATCG 58.708 52.381 0.00 0.00 34.23 3.34
737 791 1.032114 CCCTTTGACCTCCAATCGGC 61.032 60.000 0.00 0.00 34.23 5.54
738 792 0.035056 CCTTTGACCTCCAATCGGCT 60.035 55.000 0.00 0.00 34.23 5.52
739 793 1.373570 CTTTGACCTCCAATCGGCTC 58.626 55.000 0.00 0.00 34.23 4.70
740 794 0.391130 TTTGACCTCCAATCGGCTCG 60.391 55.000 0.00 0.00 34.23 5.03
824 897 1.092921 CGTCCGGTGAGAGAGAGAGG 61.093 65.000 0.00 0.00 0.00 3.69
838 919 6.552008 AGAGAGAGAGGGGAGATAAATACAG 58.448 44.000 0.00 0.00 0.00 2.74
863 945 3.834813 TGTGAGGAGTGAGAAGCATTAGT 59.165 43.478 0.00 0.00 0.00 2.24
887 969 1.451028 GAGAGGCAGCCATCACCAC 60.451 63.158 15.80 0.00 0.00 4.16
1020 1126 1.004440 ACGCAGGCTGTTCCTTCTC 60.004 57.895 17.16 0.00 44.75 2.87
1025 1131 2.665603 GCTGTTCCTTCTCGGGCT 59.334 61.111 0.00 0.00 0.00 5.19
1044 1150 1.377202 GAAATGGCGGAGGAGCACA 60.377 57.895 0.00 0.00 39.27 4.57
1047 1153 2.410322 AATGGCGGAGGAGCACAACA 62.410 55.000 0.00 0.00 39.27 3.33
1052 1158 3.782244 GAGGAGCACAACAGCGCG 61.782 66.667 0.00 0.00 40.15 6.86
1253 1359 2.971660 CCAAGGTTGGTTTTCCGTTT 57.028 45.000 0.09 0.00 43.43 3.60
1255 1361 2.429250 CCAAGGTTGGTTTTCCGTTTCT 59.571 45.455 0.09 0.00 43.43 2.52
1306 1420 0.541764 TTGGGTTGGCATCCCTGTTC 60.542 55.000 29.06 7.81 44.84 3.18
1307 1421 1.682344 GGGTTGGCATCCCTGTTCC 60.682 63.158 23.71 0.00 41.58 3.62
1309 1423 0.967380 GGTTGGCATCCCTGTTCCTG 60.967 60.000 3.03 0.00 0.00 3.86
1328 1445 3.508793 CCTGTTTGGAAGCATCTGATTGT 59.491 43.478 0.00 0.00 38.35 2.71
1330 1447 4.873817 TGTTTGGAAGCATCTGATTGTTG 58.126 39.130 0.00 0.00 0.00 3.33
1331 1448 4.341806 TGTTTGGAAGCATCTGATTGTTGT 59.658 37.500 0.00 0.00 0.00 3.32
1338 1461 5.876612 AGCATCTGATTGTTGTTTCTCTC 57.123 39.130 0.00 0.00 0.00 3.20
1569 1695 3.164977 TCCCCGTGCCTGTCAACA 61.165 61.111 0.00 0.00 0.00 3.33
1574 1700 1.961277 CGTGCCTGTCAACACTCCC 60.961 63.158 4.62 0.00 34.58 4.30
1737 1863 1.471676 CCTCTGTCATACACCGCCTTC 60.472 57.143 0.00 0.00 0.00 3.46
1738 1864 1.204704 CTCTGTCATACACCGCCTTCA 59.795 52.381 0.00 0.00 0.00 3.02
1741 1871 1.070914 TGTCATACACCGCCTTCAACA 59.929 47.619 0.00 0.00 0.00 3.33
1743 1873 2.159627 GTCATACACCGCCTTCAACAAG 59.840 50.000 0.00 0.00 0.00 3.16
1786 1920 5.353938 CCGGGATTATTCTCTGACGTTTTA 58.646 41.667 0.00 0.00 0.00 1.52
1807 1941 9.634163 GTTTTATATGATTTCGGGTTTCAGTTT 57.366 29.630 0.00 0.00 0.00 2.66
2121 2258 1.153756 CCCCACTTCCTTTGCCTGT 59.846 57.895 0.00 0.00 0.00 4.00
2146 2284 5.505780 CTGTCATGTCCCCCAAAAGTATTA 58.494 41.667 0.00 0.00 0.00 0.98
2380 2534 7.309012 GGGTTATGAAGATCCATCAATGACATG 60.309 40.741 3.19 0.00 0.00 3.21
2393 2547 5.063204 TCAATGACATGTCGAACTCCTTTT 58.937 37.500 20.54 1.21 0.00 2.27
2394 2548 6.227522 TCAATGACATGTCGAACTCCTTTTA 58.772 36.000 20.54 0.00 0.00 1.52
2396 2550 8.038351 TCAATGACATGTCGAACTCCTTTTATA 58.962 33.333 20.54 0.00 0.00 0.98
2397 2551 8.830580 CAATGACATGTCGAACTCCTTTTATAT 58.169 33.333 20.54 0.85 0.00 0.86
2399 2553 8.786826 TGACATGTCGAACTCCTTTTATATTT 57.213 30.769 20.54 0.00 0.00 1.40
2549 2709 1.469308 CAGGAGTGGACGTACTGAGAC 59.531 57.143 0.00 0.00 0.00 3.36
2556 2716 1.194896 GACGTACTGAGACGCATCGC 61.195 60.000 0.00 0.00 46.87 4.58
2586 2755 2.440253 CCCCCGTTTCCATGGATTACTA 59.560 50.000 17.06 0.00 0.00 1.82
2631 2808 4.785511 ATTATCGATGGTTAGCGCTAGT 57.214 40.909 17.98 5.36 35.29 2.57
2674 2851 4.203076 GGTGGCGGTAGCGTCGAT 62.203 66.667 14.82 0.00 46.35 3.59
2675 2852 2.654404 GTGGCGGTAGCGTCGATC 60.654 66.667 14.82 3.74 46.35 3.69
2676 2853 4.246206 TGGCGGTAGCGTCGATCG 62.246 66.667 14.82 9.36 46.35 3.69
2689 2866 0.040336 TCGATCGATCAGCGTTAGGC 60.040 55.000 24.40 0.00 41.80 3.93
2753 2935 0.547075 TTTTGGAGGACGGTTGGTGA 59.453 50.000 0.00 0.00 0.00 4.02
2765 2959 4.854924 TGGTGATGGATGGGCGCG 62.855 66.667 0.00 0.00 0.00 6.86
2824 3028 1.228552 GGTTGCTGCTGGGAGGAAA 60.229 57.895 0.00 0.00 0.00 3.13
2825 3029 0.613012 GGTTGCTGCTGGGAGGAAAT 60.613 55.000 0.00 0.00 0.00 2.17
2827 3031 2.446435 GTTGCTGCTGGGAGGAAATAA 58.554 47.619 0.00 0.00 0.00 1.40
2840 3044 4.517832 GGAGGAAATAAAAGTGTCGTGGTT 59.482 41.667 0.00 0.00 0.00 3.67
2841 3045 5.334646 GGAGGAAATAAAAGTGTCGTGGTTC 60.335 44.000 0.00 0.00 0.00 3.62
2842 3046 4.517832 AGGAAATAAAAGTGTCGTGGTTCC 59.482 41.667 0.00 0.00 33.66 3.62
2843 3047 4.460505 GAAATAAAAGTGTCGTGGTTCCG 58.539 43.478 0.00 0.00 0.00 4.30
2844 3048 2.886862 TAAAAGTGTCGTGGTTCCGA 57.113 45.000 0.00 0.00 33.79 4.55
2879 3090 0.533755 GGTATGGTGCTGCCTGCTAG 60.534 60.000 0.00 0.00 43.37 3.42
2880 3091 0.179000 GTATGGTGCTGCCTGCTAGT 59.821 55.000 0.00 0.00 43.37 2.57
2882 3093 0.393537 ATGGTGCTGCCTGCTAGTTC 60.394 55.000 0.00 0.00 43.37 3.01
2883 3094 1.298014 GGTGCTGCCTGCTAGTTCT 59.702 57.895 0.00 0.00 43.37 3.01
2884 3095 0.537188 GGTGCTGCCTGCTAGTTCTA 59.463 55.000 0.00 0.00 43.37 2.10
2885 3096 1.472376 GGTGCTGCCTGCTAGTTCTAG 60.472 57.143 0.00 2.80 43.37 2.43
2890 3102 2.028130 TGCCTGCTAGTTCTAGCTCTC 58.972 52.381 25.49 16.63 43.20 3.20
2902 3115 3.822607 AGCTCTCGCTGTGTAAAGG 57.177 52.632 0.00 0.00 46.86 3.11
2903 3116 0.390472 AGCTCTCGCTGTGTAAAGGC 60.390 55.000 0.00 0.00 46.86 4.35
2913 3133 3.059325 GCTGTGTAAAGGCGATGATGATC 60.059 47.826 0.00 0.00 0.00 2.92
2931 3151 2.178912 TCGGGAAAATATCATCGGCC 57.821 50.000 0.00 0.00 0.00 6.13
2943 3163 2.951101 ATCGGCCGTTCGGAAAGGT 61.951 57.895 27.15 1.70 0.00 3.50
3021 3264 3.118847 TGCTTTGTTGCAATTCCACTTCA 60.119 39.130 0.59 0.00 40.29 3.02
3033 3276 3.678056 TCCACTTCAGTCATGTGTACC 57.322 47.619 0.00 0.00 0.00 3.34
3147 3408 0.827507 GGTGCTTGGGCTTTTCCTCA 60.828 55.000 0.00 0.00 39.59 3.86
3164 3430 6.601741 TTCCTCATTGTTGCATTTTGTTTC 57.398 33.333 0.00 0.00 0.00 2.78
3165 3431 5.055812 TCCTCATTGTTGCATTTTGTTTCC 58.944 37.500 0.00 0.00 0.00 3.13
3177 3443 9.657121 TTGCATTTTGTTTCCGAATTATTTTTC 57.343 25.926 0.00 0.00 0.00 2.29
3191 3457 8.389603 CGAATTATTTTTCCATGTGAAATTGGG 58.610 33.333 9.31 0.00 42.38 4.12
3202 3468 3.006940 GTGAAATTGGGCGAGTGTCATA 58.993 45.455 0.00 0.00 0.00 2.15
3203 3469 3.006940 TGAAATTGGGCGAGTGTCATAC 58.993 45.455 0.00 0.00 0.00 2.39
3204 3470 3.270877 GAAATTGGGCGAGTGTCATACT 58.729 45.455 0.00 0.00 44.02 2.12
3205 3471 4.081365 TGAAATTGGGCGAGTGTCATACTA 60.081 41.667 0.00 0.00 40.53 1.82
3262 3538 2.281761 GTGAGGTGGTGGGTGCAG 60.282 66.667 0.00 0.00 0.00 4.41
3271 3547 3.330192 TGGGTGCAGTCCACTTGT 58.670 55.556 4.71 0.00 44.08 3.16
3273 3549 2.555547 GGGTGCAGTCCACTTGTGC 61.556 63.158 0.00 0.00 44.08 4.57
3274 3550 1.526917 GGTGCAGTCCACTTGTGCT 60.527 57.895 0.00 0.00 44.08 4.40
3275 3551 1.650912 GTGCAGTCCACTTGTGCTG 59.349 57.895 0.00 0.33 41.35 4.41
3276 3552 2.641559 GCAGTCCACTTGTGCTGC 59.358 61.111 14.23 14.23 45.70 5.25
3277 3553 4.469883 CAGTCCACTTGTGCTGCT 57.530 55.556 0.00 0.00 0.00 4.24
3278 3554 3.612517 CAGTCCACTTGTGCTGCTA 57.387 52.632 0.00 0.00 0.00 3.49
3279 3555 1.151668 CAGTCCACTTGTGCTGCTAC 58.848 55.000 0.00 0.00 0.00 3.58
3280 3556 0.035458 AGTCCACTTGTGCTGCTACC 59.965 55.000 0.00 0.00 0.00 3.18
3281 3557 0.035458 GTCCACTTGTGCTGCTACCT 59.965 55.000 0.00 0.00 0.00 3.08
3282 3558 0.321671 TCCACTTGTGCTGCTACCTC 59.678 55.000 0.00 0.00 0.00 3.85
3283 3559 0.674895 CCACTTGTGCTGCTACCTCC 60.675 60.000 0.00 0.00 0.00 4.30
3284 3560 0.035317 CACTTGTGCTGCTACCTCCA 59.965 55.000 0.00 0.00 0.00 3.86
3320 3596 4.234574 TCATGTGACGTACAGTTGCTTAG 58.765 43.478 0.00 0.00 43.80 2.18
3321 3597 3.021269 TGTGACGTACAGTTGCTTAGG 57.979 47.619 0.00 0.00 33.42 2.69
3335 3611 5.720041 AGTTGCTTAGGAAGATGGTGTACTA 59.280 40.000 0.00 0.00 0.00 1.82
3368 3644 9.967451 TTCTTAATTGTATAGTTGATGGTTCCA 57.033 29.630 0.00 0.00 0.00 3.53
3411 3687 2.815478 CCTCCGAAAGAATCTTCTCCG 58.185 52.381 0.00 1.01 36.28 4.63
3412 3688 2.482142 CCTCCGAAAGAATCTTCTCCGG 60.482 54.545 18.64 18.64 46.04 5.14
3413 3689 2.166664 CTCCGAAAGAATCTTCTCCGGT 59.833 50.000 21.61 0.00 45.46 5.28
3414 3690 2.165845 TCCGAAAGAATCTTCTCCGGTC 59.834 50.000 21.61 5.91 45.46 4.79
3446 3731 0.321346 TCTTGCATCTTCACGGCTCA 59.679 50.000 0.00 0.00 0.00 4.26
3480 3765 2.819552 GCGACGCCTGTGTTGTGTT 61.820 57.895 9.14 0.00 0.00 3.32
3522 3814 3.743521 CCTCCATTATTTGCGAGATCCA 58.256 45.455 0.00 0.00 0.00 3.41
3523 3815 4.330250 CCTCCATTATTTGCGAGATCCAT 58.670 43.478 0.00 0.00 0.00 3.41
3524 3816 4.394300 CCTCCATTATTTGCGAGATCCATC 59.606 45.833 0.00 0.00 0.00 3.51
3525 3817 4.326826 TCCATTATTTGCGAGATCCATCC 58.673 43.478 0.00 0.00 0.00 3.51
3526 3818 4.074259 CCATTATTTGCGAGATCCATCCA 58.926 43.478 0.00 0.00 0.00 3.41
3527 3819 4.083110 CCATTATTTGCGAGATCCATCCAC 60.083 45.833 0.00 0.00 0.00 4.02
3528 3820 1.972872 ATTTGCGAGATCCATCCACC 58.027 50.000 0.00 0.00 0.00 4.61
3529 3821 0.107214 TTTGCGAGATCCATCCACCC 60.107 55.000 0.00 0.00 0.00 4.61
3530 3822 2.029666 GCGAGATCCATCCACCCG 59.970 66.667 0.00 0.00 0.00 5.28
3531 3823 2.797278 GCGAGATCCATCCACCCGT 61.797 63.158 0.00 0.00 0.00 5.28
3532 3824 1.068083 CGAGATCCATCCACCCGTG 59.932 63.158 0.00 0.00 0.00 4.94
3533 3825 1.676678 CGAGATCCATCCACCCGTGT 61.677 60.000 0.00 0.00 0.00 4.49
3537 3829 2.574369 AGATCCATCCACCCGTGTAAAA 59.426 45.455 0.00 0.00 0.00 1.52
3538 3830 3.202151 AGATCCATCCACCCGTGTAAAAT 59.798 43.478 0.00 0.00 0.00 1.82
3601 3904 3.948719 GTTGGTCCCTGTCCGCCA 61.949 66.667 0.00 0.00 0.00 5.69
3775 4101 2.668212 CGCTTTCGCCCTGTTCCA 60.668 61.111 0.00 0.00 0.00 3.53
3776 4102 2.040544 CGCTTTCGCCCTGTTCCAT 61.041 57.895 0.00 0.00 0.00 3.41
3777 4103 1.508088 GCTTTCGCCCTGTTCCATG 59.492 57.895 0.00 0.00 0.00 3.66
3778 4104 1.244019 GCTTTCGCCCTGTTCCATGT 61.244 55.000 0.00 0.00 0.00 3.21
3779 4105 0.804989 CTTTCGCCCTGTTCCATGTC 59.195 55.000 0.00 0.00 0.00 3.06
3780 4106 0.953471 TTTCGCCCTGTTCCATGTCG 60.953 55.000 0.00 0.00 0.00 4.35
3781 4107 1.822114 TTCGCCCTGTTCCATGTCGA 61.822 55.000 0.00 0.00 0.00 4.20
3782 4108 1.811266 CGCCCTGTTCCATGTCGAG 60.811 63.158 0.00 0.00 0.00 4.04
3783 4109 1.296715 GCCCTGTTCCATGTCGAGT 59.703 57.895 0.00 0.00 0.00 4.18
3784 4110 0.535335 GCCCTGTTCCATGTCGAGTA 59.465 55.000 0.00 0.00 0.00 2.59
3785 4111 1.739371 GCCCTGTTCCATGTCGAGTAC 60.739 57.143 0.00 0.00 0.00 2.73
3786 4112 1.548719 CCCTGTTCCATGTCGAGTACA 59.451 52.381 0.00 0.00 43.86 2.90
3787 4113 2.417379 CCCTGTTCCATGTCGAGTACAG 60.417 54.545 0.00 0.00 42.70 2.74
3788 4114 2.417379 CCTGTTCCATGTCGAGTACAGG 60.417 54.545 11.88 11.88 44.50 4.00
3792 4118 3.352447 CATGTCGAGTACAGGGCAG 57.648 57.895 0.00 0.00 42.70 4.85
3793 4119 0.179100 CATGTCGAGTACAGGGCAGG 60.179 60.000 0.00 0.00 42.70 4.85
3794 4120 1.961180 ATGTCGAGTACAGGGCAGGC 61.961 60.000 0.00 0.00 42.70 4.85
3795 4121 3.075005 TCGAGTACAGGGCAGGCC 61.075 66.667 4.33 4.33 0.00 5.19
3796 4122 3.077556 CGAGTACAGGGCAGGCCT 61.078 66.667 10.54 10.54 36.10 5.19
3797 4123 2.904131 GAGTACAGGGCAGGCCTC 59.096 66.667 14.05 1.75 36.10 4.70
3798 4124 3.077556 AGTACAGGGCAGGCCTCG 61.078 66.667 14.05 11.49 36.10 4.63
3799 4125 4.162690 GTACAGGGCAGGCCTCGG 62.163 72.222 14.05 5.59 36.10 4.63
3800 4126 4.715130 TACAGGGCAGGCCTCGGT 62.715 66.667 14.05 11.95 36.10 4.69
3807 4133 3.917760 CAGGCCTCGGTCCGGATC 61.918 72.222 7.81 5.81 0.00 3.36
3808 4134 4.458829 AGGCCTCGGTCCGGATCA 62.459 66.667 16.61 0.82 0.00 2.92
3809 4135 3.467226 GGCCTCGGTCCGGATCAA 61.467 66.667 16.61 0.00 0.00 2.57
3810 4136 2.582436 GCCTCGGTCCGGATCAAA 59.418 61.111 16.61 0.48 0.00 2.69
3811 4137 1.078708 GCCTCGGTCCGGATCAAAA 60.079 57.895 16.61 0.00 0.00 2.44
3812 4138 1.090052 GCCTCGGTCCGGATCAAAAG 61.090 60.000 16.61 8.59 0.00 2.27
3813 4139 0.249398 CCTCGGTCCGGATCAAAAGT 59.751 55.000 16.61 0.00 0.00 2.66
3814 4140 1.359848 CTCGGTCCGGATCAAAAGTG 58.640 55.000 16.61 0.00 0.00 3.16
3815 4141 0.036765 TCGGTCCGGATCAAAAGTGG 60.037 55.000 16.61 0.00 0.00 4.00
3816 4142 0.321298 CGGTCCGGATCAAAAGTGGT 60.321 55.000 16.61 0.00 0.00 4.16
3817 4143 1.450025 GGTCCGGATCAAAAGTGGTC 58.550 55.000 10.69 0.00 33.73 4.02
3818 4144 1.076332 GTCCGGATCAAAAGTGGTCG 58.924 55.000 7.81 0.00 35.52 4.79
3819 4145 0.672401 TCCGGATCAAAAGTGGTCGC 60.672 55.000 0.00 0.00 35.52 5.19
3820 4146 1.419922 CGGATCAAAAGTGGTCGCG 59.580 57.895 0.00 0.00 35.52 5.87
3821 4147 1.134694 GGATCAAAAGTGGTCGCGC 59.865 57.895 0.00 0.00 35.52 6.86
3822 4148 1.134694 GATCAAAAGTGGTCGCGCC 59.865 57.895 0.00 6.97 37.90 6.53
3823 4149 1.573829 GATCAAAAGTGGTCGCGCCA 61.574 55.000 16.62 16.62 46.95 5.69
3832 4158 3.470567 GTCGCGCCACTTGTCGAG 61.471 66.667 0.00 0.00 0.00 4.04
3833 4159 3.666253 TCGCGCCACTTGTCGAGA 61.666 61.111 0.00 0.00 32.50 4.04
3834 4160 2.733218 CGCGCCACTTGTCGAGAA 60.733 61.111 0.00 0.00 0.00 2.87
3835 4161 2.094659 CGCGCCACTTGTCGAGAAT 61.095 57.895 0.00 0.00 0.00 2.40
3836 4162 1.626654 CGCGCCACTTGTCGAGAATT 61.627 55.000 0.00 0.00 0.00 2.17
3837 4163 0.517316 GCGCCACTTGTCGAGAATTT 59.483 50.000 0.00 0.00 0.00 1.82
3838 4164 1.069227 GCGCCACTTGTCGAGAATTTT 60.069 47.619 0.00 0.00 0.00 1.82
3839 4165 2.574322 CGCCACTTGTCGAGAATTTTG 58.426 47.619 0.00 0.00 0.00 2.44
3840 4166 2.319472 GCCACTTGTCGAGAATTTTGC 58.681 47.619 0.00 0.00 0.00 3.68
3841 4167 2.574322 CCACTTGTCGAGAATTTTGCG 58.426 47.619 0.00 0.00 0.00 4.85
3842 4168 2.223144 CCACTTGTCGAGAATTTTGCGA 59.777 45.455 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.651361 CTTGGGCGTCACGAGACT 59.349 61.111 0.00 0.00 42.73 3.24
21 22 2.744768 GCGCGAGGAAGAAGCTTGG 61.745 63.158 12.10 0.00 0.00 3.61
118 119 1.064357 GAAGTGGTTTCACGCGGAAAA 59.936 47.619 19.61 12.75 46.53 2.29
139 140 4.682320 GCGTTATTAGAGGGACCATTCACA 60.682 45.833 0.00 0.00 0.00 3.58
275 279 0.955178 TGGTACATTGCGTTGTTGGG 59.045 50.000 0.00 0.00 0.00 4.12
283 287 4.713946 ACCCACTGGTACATTGCG 57.286 55.556 0.00 0.00 45.45 4.85
292 296 4.344865 CCCGACCCAACCCACTGG 62.345 72.222 0.00 0.00 36.10 4.00
312 316 4.626604 TCGTAATGTCGTGATTTTGGTACC 59.373 41.667 4.43 4.43 0.00 3.34
362 370 5.353956 GGAAATGGCACCCAATAATTGTTTC 59.646 40.000 0.00 0.00 36.95 2.78
363 371 5.222007 TGGAAATGGCACCCAATAATTGTTT 60.222 36.000 0.00 0.00 36.95 2.83
433 446 2.355363 TTTCACCTCACCGCGTCG 60.355 61.111 4.92 0.00 0.00 5.12
434 447 1.300697 AGTTTCACCTCACCGCGTC 60.301 57.895 4.92 0.00 0.00 5.19
435 448 1.594293 CAGTTTCACCTCACCGCGT 60.594 57.895 4.92 0.00 0.00 6.01
436 449 0.878523 TTCAGTTTCACCTCACCGCG 60.879 55.000 0.00 0.00 0.00 6.46
437 450 1.002792 GTTTCAGTTTCACCTCACCGC 60.003 52.381 0.00 0.00 0.00 5.68
438 451 1.602377 GGTTTCAGTTTCACCTCACCG 59.398 52.381 0.00 0.00 0.00 4.94
472 494 1.349627 CTTTACGGCTCATGCGCAG 59.650 57.895 18.32 8.23 40.82 5.18
541 570 1.008767 CCGCGTTTTTAACCGGCAA 60.009 52.632 4.92 0.00 38.01 4.52
542 571 2.638154 CCGCGTTTTTAACCGGCA 59.362 55.556 4.92 0.00 38.01 5.69
619 650 2.291402 TTTACCCCGGGCCATGGATG 62.291 60.000 17.73 0.15 0.00 3.51
620 651 1.585651 TTTTACCCCGGGCCATGGAT 61.586 55.000 17.73 0.00 0.00 3.41
621 652 2.239439 TTTTACCCCGGGCCATGGA 61.239 57.895 17.73 0.00 0.00 3.41
622 653 2.055633 GTTTTACCCCGGGCCATGG 61.056 63.158 17.73 7.63 0.00 3.66
623 654 0.613572 AAGTTTTACCCCGGGCCATG 60.614 55.000 17.73 3.35 0.00 3.66
624 655 0.115547 AAAGTTTTACCCCGGGCCAT 59.884 50.000 17.73 4.96 0.00 4.40
625 656 0.105607 AAAAGTTTTACCCCGGGCCA 60.106 50.000 17.73 0.23 0.00 5.36
626 657 1.050204 AAAAAGTTTTACCCCGGGCC 58.950 50.000 17.73 0.00 0.00 5.80
627 658 3.302365 GTAAAAAGTTTTACCCCGGGC 57.698 47.619 17.73 0.00 44.07 6.13
641 672 7.410485 GGGCGAATTGTTCAAAAATGTAAAAA 58.590 30.769 0.00 0.00 0.00 1.94
677 714 0.115152 AAAGAAAGGGGAGGGGCAAG 59.885 55.000 0.00 0.00 0.00 4.01
717 771 0.618458 CCGATTGGAGGTCAAAGGGA 59.382 55.000 0.00 0.00 39.05 4.20
735 789 3.665675 ATGTCAAGGACGGCGAGCC 62.666 63.158 16.62 15.00 34.95 4.70
737 791 1.084370 GGAATGTCAAGGACGGCGAG 61.084 60.000 16.62 0.00 34.95 5.03
738 792 1.079405 GGAATGTCAAGGACGGCGA 60.079 57.895 16.62 0.00 34.95 5.54
739 793 1.079127 AGGAATGTCAAGGACGGCG 60.079 57.895 4.80 4.80 34.95 6.46
740 794 0.744771 GGAGGAATGTCAAGGACGGC 60.745 60.000 0.00 0.00 34.95 5.68
824 897 6.650120 TCCTCACAAACTGTATTTATCTCCC 58.350 40.000 0.00 0.00 0.00 4.30
838 919 2.838736 TGCTTCTCACTCCTCACAAAC 58.161 47.619 0.00 0.00 0.00 2.93
1008 1105 1.743252 CAGCCCGAGAAGGAACAGC 60.743 63.158 0.00 0.00 45.00 4.40
1009 1106 0.321671 TTCAGCCCGAGAAGGAACAG 59.678 55.000 0.00 0.00 45.00 3.16
1010 1107 0.762418 TTTCAGCCCGAGAAGGAACA 59.238 50.000 0.00 0.00 45.00 3.18
1011 1108 1.740025 CATTTCAGCCCGAGAAGGAAC 59.260 52.381 0.00 0.00 45.00 3.62
1020 1126 3.204827 CTCCGCCATTTCAGCCCG 61.205 66.667 0.00 0.00 0.00 6.13
1025 1131 1.377202 GTGCTCCTCCGCCATTTCA 60.377 57.895 0.00 0.00 0.00 2.69
1267 1373 2.680913 CCAAGCCAAGAAGCGACGG 61.681 63.158 0.00 0.00 38.01 4.79
1306 1420 3.508793 ACAATCAGATGCTTCCAAACAGG 59.491 43.478 0.00 0.00 39.47 4.00
1307 1421 4.778534 ACAATCAGATGCTTCCAAACAG 57.221 40.909 0.00 0.00 0.00 3.16
1309 1423 4.874970 ACAACAATCAGATGCTTCCAAAC 58.125 39.130 0.00 0.00 0.00 2.93
1328 1445 3.223435 ACACGGAGAGAGAGAGAAACAA 58.777 45.455 0.00 0.00 0.00 2.83
1330 1447 3.078837 AGACACGGAGAGAGAGAGAAAC 58.921 50.000 0.00 0.00 0.00 2.78
1331 1448 3.340034 GAGACACGGAGAGAGAGAGAAA 58.660 50.000 0.00 0.00 0.00 2.52
1338 1461 2.401592 CGCGAGACACGGAGAGAG 59.598 66.667 0.00 0.00 42.83 3.20
1551 1674 2.668550 GTTGACAGGCACGGGGAC 60.669 66.667 0.00 0.00 0.00 4.46
1743 1873 0.164002 GAGAAACGAAGCGGAACAGC 59.836 55.000 0.00 0.00 37.41 4.40
1786 1920 7.557719 AGATGAAACTGAAACCCGAAATCATAT 59.442 33.333 0.00 0.00 0.00 1.78
2121 2258 1.075374 CTTTTGGGGGACATGACAGGA 59.925 52.381 0.00 0.00 0.00 3.86
2164 2302 2.032528 TGAGGCCAAGCAGAACCG 59.967 61.111 5.01 0.00 0.00 4.44
2380 2534 8.108782 CGAGACAAAATATAAAAGGAGTTCGAC 58.891 37.037 0.00 0.00 0.00 4.20
2602 2779 8.129840 AGCGCTAACCATCGATAATAGTAATAG 58.870 37.037 8.99 0.00 0.00 1.73
2609 2786 5.892160 ACTAGCGCTAACCATCGATAATA 57.108 39.130 19.37 0.00 0.00 0.98
2631 2808 6.603224 CCTCCTACCTCTAGCTAACTTCTAA 58.397 44.000 0.00 0.00 0.00 2.10
2669 2846 1.676057 CCTAACGCTGATCGATCGAC 58.324 55.000 22.06 14.65 41.67 4.20
2670 2847 0.040336 GCCTAACGCTGATCGATCGA 60.040 55.000 21.86 21.86 41.67 3.59
2671 2848 1.330779 CGCCTAACGCTGATCGATCG 61.331 60.000 20.03 9.36 41.67 3.69
2672 2849 2.425278 CGCCTAACGCTGATCGATC 58.575 57.895 18.72 18.72 41.67 3.69
2673 2850 4.635925 CGCCTAACGCTGATCGAT 57.364 55.556 0.00 0.00 41.67 3.59
2689 2866 1.297304 ACGCACGCACAAAAGAACG 60.297 52.632 0.00 0.00 0.00 3.95
2713 2890 7.860373 CCAAAATAACCAATATATCACCACACG 59.140 37.037 0.00 0.00 0.00 4.49
2765 2959 0.316204 TTCTCCTCCGTTGTTCGTCC 59.684 55.000 0.00 0.00 37.94 4.79
2811 3015 4.082125 ACACTTTTATTTCCTCCCAGCAG 58.918 43.478 0.00 0.00 0.00 4.24
2815 3019 4.069304 CACGACACTTTTATTTCCTCCCA 58.931 43.478 0.00 0.00 0.00 4.37
2824 3028 3.389925 TCGGAACCACGACACTTTTAT 57.610 42.857 0.00 0.00 38.06 1.40
2825 3029 2.886862 TCGGAACCACGACACTTTTA 57.113 45.000 0.00 0.00 38.06 1.52
2842 3046 2.334838 ACCTCCGAAATTTCTTCGTCG 58.665 47.619 15.92 2.42 40.04 5.12
2843 3047 4.270325 CCATACCTCCGAAATTTCTTCGTC 59.730 45.833 15.92 0.00 40.04 4.20
2844 3048 4.189231 CCATACCTCCGAAATTTCTTCGT 58.811 43.478 15.92 8.89 40.04 3.85
2913 3133 0.796312 CGGCCGATGATATTTTCCCG 59.204 55.000 24.07 0.00 0.00 5.14
2925 3145 2.125269 CCTTTCCGAACGGCCGAT 60.125 61.111 35.90 23.25 34.68 4.18
2931 3151 1.663702 AGCGACACCTTTCCGAACG 60.664 57.895 0.00 0.00 0.00 3.95
3033 3276 5.392703 CGATGCCAAAAGGGATGATATGATG 60.393 44.000 0.00 0.00 40.01 3.07
3147 3408 6.616774 AATTCGGAAACAAAATGCAACAAT 57.383 29.167 0.00 0.00 0.00 2.71
3177 3443 1.135315 CACTCGCCCAATTTCACATGG 60.135 52.381 0.00 0.00 36.42 3.66
3191 3457 2.356382 ACTGAGCTAGTATGACACTCGC 59.644 50.000 0.00 0.00 44.34 5.03
3202 3468 7.766278 CCAAGTGTAATTAATCACTGAGCTAGT 59.234 37.037 9.81 0.00 42.95 2.57
3203 3469 7.981789 TCCAAGTGTAATTAATCACTGAGCTAG 59.018 37.037 9.81 0.00 42.95 3.42
3204 3470 7.847096 TCCAAGTGTAATTAATCACTGAGCTA 58.153 34.615 9.81 0.00 42.95 3.32
3205 3471 6.711277 TCCAAGTGTAATTAATCACTGAGCT 58.289 36.000 9.81 0.00 42.95 4.09
3262 3538 0.035458 AGGTAGCAGCACAAGTGGAC 59.965 55.000 2.00 0.00 0.00 4.02
3271 3547 2.390306 TTTGCGTGGAGGTAGCAGCA 62.390 55.000 0.00 0.00 42.19 4.41
3273 3549 0.798776 CTTTTGCGTGGAGGTAGCAG 59.201 55.000 0.00 0.00 42.19 4.24
3274 3550 0.107831 ACTTTTGCGTGGAGGTAGCA 59.892 50.000 0.00 0.00 39.33 3.49
3275 3551 0.796927 GACTTTTGCGTGGAGGTAGC 59.203 55.000 0.00 0.00 0.00 3.58
3276 3552 2.457366 AGACTTTTGCGTGGAGGTAG 57.543 50.000 0.00 0.00 0.00 3.18
3277 3553 4.020928 TGATTAGACTTTTGCGTGGAGGTA 60.021 41.667 0.00 0.00 0.00 3.08
3278 3554 2.922740 TTAGACTTTTGCGTGGAGGT 57.077 45.000 0.00 0.00 0.00 3.85
3279 3555 3.334691 TGATTAGACTTTTGCGTGGAGG 58.665 45.455 0.00 0.00 0.00 4.30
3280 3556 4.393062 ACATGATTAGACTTTTGCGTGGAG 59.607 41.667 0.00 0.00 0.00 3.86
3281 3557 4.154015 CACATGATTAGACTTTTGCGTGGA 59.846 41.667 0.00 0.00 0.00 4.02
3282 3558 4.154015 TCACATGATTAGACTTTTGCGTGG 59.846 41.667 0.00 0.00 0.00 4.94
3283 3559 5.082059 GTCACATGATTAGACTTTTGCGTG 58.918 41.667 0.00 0.00 0.00 5.34
3284 3560 4.143115 CGTCACATGATTAGACTTTTGCGT 60.143 41.667 0.00 0.00 0.00 5.24
3320 3596 7.331791 AGAAAGAACATAGTACACCATCTTCC 58.668 38.462 0.00 0.00 0.00 3.46
3321 3597 8.779354 AAGAAAGAACATAGTACACCATCTTC 57.221 34.615 0.00 0.00 0.00 2.87
3368 3644 2.698274 GGATGGCCCGTTAATTCCAATT 59.302 45.455 0.00 0.00 31.66 2.32
3480 3765 3.738830 CGTAGAATTACGGGGATCCAA 57.261 47.619 15.23 0.00 46.81 3.53
3505 3790 4.083110 GGTGGATGGATCTCGCAAATAATG 60.083 45.833 0.00 0.00 0.00 1.90
3519 3804 4.225492 TCTTATTTTACACGGGTGGATGGA 59.775 41.667 0.00 0.00 34.19 3.41
3522 3814 4.226620 ACCTCTTATTTTACACGGGTGGAT 59.773 41.667 0.00 0.00 34.19 3.41
3523 3815 3.583966 ACCTCTTATTTTACACGGGTGGA 59.416 43.478 0.00 0.00 34.19 4.02
3524 3816 3.937079 GACCTCTTATTTTACACGGGTGG 59.063 47.826 0.00 0.00 34.19 4.61
3525 3817 3.615496 CGACCTCTTATTTTACACGGGTG 59.385 47.826 0.00 0.00 0.00 4.61
3526 3818 3.368739 CCGACCTCTTATTTTACACGGGT 60.369 47.826 0.00 0.00 35.24 5.28
3527 3819 3.192466 CCGACCTCTTATTTTACACGGG 58.808 50.000 0.00 0.00 35.24 5.28
3528 3820 3.192466 CCCGACCTCTTATTTTACACGG 58.808 50.000 0.00 0.00 37.98 4.94
3529 3821 3.192466 CCCCGACCTCTTATTTTACACG 58.808 50.000 0.00 0.00 0.00 4.49
3530 3822 2.941064 GCCCCGACCTCTTATTTTACAC 59.059 50.000 0.00 0.00 0.00 2.90
3531 3823 2.092807 GGCCCCGACCTCTTATTTTACA 60.093 50.000 0.00 0.00 0.00 2.41
3532 3824 2.569059 GGCCCCGACCTCTTATTTTAC 58.431 52.381 0.00 0.00 0.00 2.01
3533 3825 1.139455 CGGCCCCGACCTCTTATTTTA 59.861 52.381 0.00 0.00 42.83 1.52
3537 3829 2.842936 CCGGCCCCGACCTCTTAT 60.843 66.667 8.54 0.00 42.83 1.73
3638 3941 0.532573 GAATCTCCACTCGCCTCACA 59.467 55.000 0.00 0.00 0.00 3.58
3707 4033 1.536073 TTGACCGGGTCAGAGCAGAG 61.536 60.000 27.32 0.00 43.69 3.35
3708 4034 0.904865 ATTGACCGGGTCAGAGCAGA 60.905 55.000 27.32 14.00 43.69 4.26
3775 4101 1.961180 GCCTGCCCTGTACTCGACAT 61.961 60.000 0.00 0.00 37.45 3.06
3776 4102 2.646175 GCCTGCCCTGTACTCGACA 61.646 63.158 0.00 0.00 36.35 4.35
3777 4103 2.184579 GCCTGCCCTGTACTCGAC 59.815 66.667 0.00 0.00 0.00 4.20
3778 4104 3.075005 GGCCTGCCCTGTACTCGA 61.075 66.667 0.00 0.00 0.00 4.04
3779 4105 3.077556 AGGCCTGCCCTGTACTCG 61.078 66.667 3.11 0.00 44.28 4.18
3780 4106 2.904131 GAGGCCTGCCCTGTACTC 59.096 66.667 12.00 0.00 46.60 2.59
3781 4107 3.077556 CGAGGCCTGCCCTGTACT 61.078 66.667 12.00 0.00 46.60 2.73
3782 4108 4.162690 CCGAGGCCTGCCCTGTAC 62.163 72.222 12.00 0.00 46.60 2.90
3783 4109 4.715130 ACCGAGGCCTGCCCTGTA 62.715 66.667 12.00 0.00 46.60 2.74
3790 4116 3.917760 GATCCGGACCGAGGCCTG 61.918 72.222 12.00 0.00 0.00 4.85
3791 4117 3.976490 TTGATCCGGACCGAGGCCT 62.976 63.158 17.49 3.86 0.00 5.19
3792 4118 2.530958 TTTTGATCCGGACCGAGGCC 62.531 60.000 17.49 0.00 0.00 5.19
3793 4119 1.078708 TTTTGATCCGGACCGAGGC 60.079 57.895 17.49 4.10 0.00 4.70
3794 4120 0.249398 ACTTTTGATCCGGACCGAGG 59.751 55.000 17.49 0.00 0.00 4.63
3795 4121 1.359848 CACTTTTGATCCGGACCGAG 58.640 55.000 17.49 5.11 0.00 4.63
3796 4122 0.036765 CCACTTTTGATCCGGACCGA 60.037 55.000 17.49 0.00 0.00 4.69
3797 4123 0.321298 ACCACTTTTGATCCGGACCG 60.321 55.000 6.12 6.99 0.00 4.79
3798 4124 1.450025 GACCACTTTTGATCCGGACC 58.550 55.000 6.12 0.00 0.00 4.46
3799 4125 1.076332 CGACCACTTTTGATCCGGAC 58.924 55.000 6.12 0.90 0.00 4.79
3800 4126 0.672401 GCGACCACTTTTGATCCGGA 60.672 55.000 6.61 6.61 0.00 5.14
3801 4127 1.794222 GCGACCACTTTTGATCCGG 59.206 57.895 0.00 0.00 0.00 5.14
3802 4128 1.419922 CGCGACCACTTTTGATCCG 59.580 57.895 0.00 0.00 0.00 4.18
3803 4129 1.134694 GCGCGACCACTTTTGATCC 59.865 57.895 12.10 0.00 0.00 3.36
3804 4130 1.134694 GGCGCGACCACTTTTGATC 59.865 57.895 12.10 0.00 38.86 2.92
3805 4131 1.599518 TGGCGCGACCACTTTTGAT 60.600 52.632 10.82 0.00 46.36 2.57
3806 4132 2.203084 TGGCGCGACCACTTTTGA 60.203 55.556 10.82 0.00 46.36 2.69
3820 4146 2.319472 GCAAAATTCTCGACAAGTGGC 58.681 47.619 0.00 0.00 0.00 5.01
3821 4147 2.223144 TCGCAAAATTCTCGACAAGTGG 59.777 45.455 0.00 0.00 0.00 4.00
3822 4148 3.519908 TCGCAAAATTCTCGACAAGTG 57.480 42.857 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.