Multiple sequence alignment - TraesCS3B01G396200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G396200 chr3B 100.000 3962 0 0 1 3962 625203701 625199740 0.000000e+00 7317.0
1 TraesCS3B01G396200 chr3B 80.105 191 33 4 968 1153 438538070 438537880 1.920000e-28 137.0
2 TraesCS3B01G396200 chr3D 95.057 1578 38 16 2405 3948 470730085 470728514 0.000000e+00 2446.0
3 TraesCS3B01G396200 chr3D 92.356 1125 42 20 713 1822 470731708 470730613 0.000000e+00 1561.0
4 TraesCS3B01G396200 chr3D 96.721 488 16 0 1831 2318 470730572 470730085 0.000000e+00 813.0
5 TraesCS3B01G396200 chr3D 83.862 347 28 10 333 671 470732028 470731702 4.970000e-79 305.0
6 TraesCS3B01G396200 chr3A 95.990 1222 42 3 2373 3591 612985879 612984662 0.000000e+00 1978.0
7 TraesCS3B01G396200 chr3A 89.854 1508 77 35 333 1822 612987950 612986501 0.000000e+00 1868.0
8 TraesCS3B01G396200 chr3A 96.185 498 19 0 1831 2328 612986460 612985963 0.000000e+00 815.0
9 TraesCS3B01G396200 chr3A 89.474 57 5 1 3906 3962 612984025 612983970 1.980000e-08 71.3
10 TraesCS3B01G396200 chr7B 92.749 331 11 2 3 330 713436554 713436874 2.160000e-127 466.0
11 TraesCS3B01G396200 chr7B 98.266 173 2 1 159 330 34058421 34058249 6.430000e-78 302.0
12 TraesCS3B01G396200 chr7B 90.805 174 13 2 994 1167 501508501 501508671 3.080000e-56 230.0
13 TraesCS3B01G396200 chr7B 80.822 73 12 2 79 151 121500909 121500979 5.530000e-04 56.5
14 TraesCS3B01G396200 chr2D 88.720 328 30 3 6 330 555104933 555104610 1.030000e-105 394.0
15 TraesCS3B01G396200 chr1B 85.373 335 39 10 5 330 51966104 51966437 4.900000e-89 339.0
16 TraesCS3B01G396200 chr5B 96.335 191 4 2 994 1183 665208810 665208622 1.070000e-80 311.0
17 TraesCS3B01G396200 chr5B 79.167 336 60 9 17 345 540286294 540285962 1.430000e-54 224.0
18 TraesCS3B01G396200 chr5B 76.048 334 58 16 5 330 257524059 257523740 1.910000e-33 154.0
19 TraesCS3B01G396200 chr5B 77.083 240 40 15 3 235 371899957 371899726 1.490000e-24 124.0
20 TraesCS3B01G396200 chr5B 83.846 130 19 2 7 135 61149335 61149463 5.380000e-24 122.0
21 TraesCS3B01G396200 chr5D 95.876 194 3 5 991 1182 528401973 528402163 3.850000e-80 309.0
22 TraesCS3B01G396200 chr5A 97.283 184 2 3 1001 1183 656466891 656467072 3.850000e-80 309.0
23 TraesCS3B01G396200 chr5A 93.038 158 11 0 996 1153 383883162 383883005 8.560000e-57 231.0
24 TraesCS3B01G396200 chr7D 90.805 174 13 2 994 1167 477072292 477072462 3.080000e-56 230.0
25 TraesCS3B01G396200 chr7D 81.818 99 13 5 14 109 572170013 572170109 1.180000e-10 78.7
26 TraesCS3B01G396200 chr7A 90.805 174 13 2 994 1167 518809689 518809519 3.080000e-56 230.0
27 TraesCS3B01G396200 chr2A 81.651 109 14 6 5 109 13093718 13093824 7.050000e-13 86.1
28 TraesCS3B01G396200 chr2B 81.915 94 11 6 18 108 562870743 562870653 1.530000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G396200 chr3B 625199740 625203701 3961 True 7317.000 7317 100.00000 1 3962 1 chr3B.!!$R2 3961
1 TraesCS3B01G396200 chr3D 470728514 470732028 3514 True 1281.250 2446 91.99900 333 3948 4 chr3D.!!$R1 3615
2 TraesCS3B01G396200 chr3A 612983970 612987950 3980 True 1183.075 1978 92.87575 333 3962 4 chr3A.!!$R1 3629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.034337 GTCCTGTGGCGAAGTGGTTA 59.966 55.000 0.00 0.0 0.00 2.85 F
352 353 0.107831 CGCCGAATAGGAAATCCCCA 59.892 55.000 0.00 0.0 45.00 4.96 F
561 566 0.179004 AAAAGGTCCATGCACCGACA 60.179 50.000 14.97 0.0 41.90 4.35 F
905 925 0.508641 CGTCCACGAGCTTGTTTCTG 59.491 55.000 3.02 0.0 43.02 3.02 F
911 931 1.000955 ACGAGCTTGTTTCTGATCCGT 59.999 47.619 0.00 0.0 0.00 4.69 F
1815 1857 0.106469 TTGGGTTGGCACTGCACTAA 60.106 50.000 2.82 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1313 1355 0.104120 GTTCAACAGGCCAAACCACC 59.896 55.000 5.01 0.0 43.14 4.61 R
1314 1356 0.820871 TGTTCAACAGGCCAAACCAC 59.179 50.000 5.01 0.0 43.14 4.16 R
1614 1656 1.178534 AACTGAAACCATGCCCACGG 61.179 55.000 0.00 0.0 0.00 4.94 R
1717 1759 1.602377 ACGGCTCAGTTGTTTACAAGC 59.398 47.619 0.00 0.0 36.39 4.01 R
1955 2029 1.667724 CAGCTTTCTGGCAATAGGACG 59.332 52.381 0.00 0.0 36.68 4.79 R
3571 3780 1.656095 CACGAAAGACTTCTCATCCGC 59.344 52.381 0.00 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.994887 AAAGAAAACCCAAATAAAACCGC 57.005 34.783 0.00 0.00 0.00 5.68
46 47 3.997762 AGAAAACCCAAATAAAACCGCC 58.002 40.909 0.00 0.00 0.00 6.13
47 48 2.843401 AAACCCAAATAAAACCGCCC 57.157 45.000 0.00 0.00 0.00 6.13
48 49 0.978151 AACCCAAATAAAACCGCCCC 59.022 50.000 0.00 0.00 0.00 5.80
49 50 1.252215 ACCCAAATAAAACCGCCCCG 61.252 55.000 0.00 0.00 0.00 5.73
60 61 3.504927 CGCCCCGGAAATTACCAC 58.495 61.111 0.73 0.00 0.00 4.16
61 62 2.466140 CGCCCCGGAAATTACCACG 61.466 63.158 0.73 0.00 0.00 4.94
62 63 1.078285 GCCCCGGAAATTACCACGA 60.078 57.895 0.73 0.00 0.00 4.35
63 64 0.677414 GCCCCGGAAATTACCACGAA 60.677 55.000 0.73 0.00 0.00 3.85
64 65 2.020181 GCCCCGGAAATTACCACGAAT 61.020 52.381 0.73 0.00 0.00 3.34
65 66 1.944709 CCCCGGAAATTACCACGAATC 59.055 52.381 0.73 0.00 0.00 2.52
66 67 1.595794 CCCGGAAATTACCACGAATCG 59.404 52.381 0.73 0.00 0.00 3.34
67 68 1.595794 CCGGAAATTACCACGAATCGG 59.404 52.381 7.80 0.00 0.00 4.18
68 69 1.595794 CGGAAATTACCACGAATCGGG 59.404 52.381 7.80 1.60 0.00 5.14
69 70 2.739287 CGGAAATTACCACGAATCGGGA 60.739 50.000 6.42 0.00 28.17 5.14
70 71 3.473625 GGAAATTACCACGAATCGGGAT 58.526 45.455 6.42 0.00 28.17 3.85
71 72 4.634199 GGAAATTACCACGAATCGGGATA 58.366 43.478 6.42 0.00 28.17 2.59
72 73 5.058490 GGAAATTACCACGAATCGGGATAA 58.942 41.667 6.42 0.00 28.17 1.75
73 74 5.528320 GGAAATTACCACGAATCGGGATAAA 59.472 40.000 6.42 0.00 28.17 1.40
74 75 6.038492 GGAAATTACCACGAATCGGGATAAAA 59.962 38.462 6.42 0.00 28.17 1.52
75 76 5.996669 ATTACCACGAATCGGGATAAAAC 57.003 39.130 6.42 0.00 28.17 2.43
76 77 2.635714 ACCACGAATCGGGATAAAACC 58.364 47.619 6.42 0.00 28.17 3.27
83 84 2.371306 ATCGGGATAAAACCGGTTTGG 58.629 47.619 32.23 16.76 43.49 3.28
84 85 2.946791 ATCGGGATAAAACCGGTTTGGG 60.947 50.000 32.23 17.08 43.49 4.12
85 86 2.219080 GGGATAAAACCGGTTTGGGA 57.781 50.000 32.23 20.52 44.64 4.37
86 87 2.527497 GGGATAAAACCGGTTTGGGAA 58.473 47.619 32.23 18.23 44.64 3.97
87 88 2.494471 GGGATAAAACCGGTTTGGGAAG 59.506 50.000 32.23 0.00 44.64 3.46
88 89 2.094390 GGATAAAACCGGTTTGGGAAGC 60.094 50.000 32.23 19.51 44.64 3.86
89 90 2.368311 TAAAACCGGTTTGGGAAGCT 57.632 45.000 32.23 17.32 44.64 3.74
90 91 1.491668 AAAACCGGTTTGGGAAGCTT 58.508 45.000 32.23 11.98 44.64 3.74
91 92 1.037493 AAACCGGTTTGGGAAGCTTC 58.963 50.000 31.17 18.54 44.64 3.86
92 93 0.185175 AACCGGTTTGGGAAGCTTCT 59.815 50.000 25.05 0.00 44.64 2.85
93 94 0.537371 ACCGGTTTGGGAAGCTTCTG 60.537 55.000 25.05 4.48 44.64 3.02
94 95 1.244019 CCGGTTTGGGAAGCTTCTGG 61.244 60.000 25.05 10.02 0.00 3.86
95 96 0.250727 CGGTTTGGGAAGCTTCTGGA 60.251 55.000 25.05 8.97 0.00 3.86
96 97 1.817740 CGGTTTGGGAAGCTTCTGGAA 60.818 52.381 25.05 14.02 0.00 3.53
97 98 1.889170 GGTTTGGGAAGCTTCTGGAAG 59.111 52.381 25.05 6.02 41.24 3.46
113 114 3.650070 GGAAGCTTCCCAAAACTGAAG 57.350 47.619 31.91 0.00 41.62 3.02
114 115 2.297315 GGAAGCTTCCCAAAACTGAAGG 59.703 50.000 31.91 0.00 41.62 3.46
115 116 3.222603 GAAGCTTCCCAAAACTGAAGGA 58.777 45.455 15.97 0.00 0.00 3.36
116 117 3.532641 AGCTTCCCAAAACTGAAGGAT 57.467 42.857 0.00 0.00 0.00 3.24
117 118 3.849527 AGCTTCCCAAAACTGAAGGATT 58.150 40.909 0.00 0.00 0.00 3.01
118 119 8.457348 GGAAGCTTCCCAAAACTGAAGGATTC 62.457 46.154 31.91 2.74 42.93 2.52
119 120 3.056536 GCTTCCCAAAACTGAAGGATTCC 60.057 47.826 0.00 0.00 46.93 3.01
120 121 2.790433 TCCCAAAACTGAAGGATTCCG 58.210 47.619 0.00 0.00 46.93 4.30
121 122 1.818674 CCCAAAACTGAAGGATTCCGG 59.181 52.381 0.00 0.00 46.93 5.14
122 123 1.202348 CCAAAACTGAAGGATTCCGGC 59.798 52.381 0.00 0.00 46.93 6.13
123 124 1.135689 CAAAACTGAAGGATTCCGGCG 60.136 52.381 0.00 0.00 46.93 6.46
124 125 0.676782 AAACTGAAGGATTCCGGCGG 60.677 55.000 22.51 22.51 46.93 6.13
125 126 2.897350 CTGAAGGATTCCGGCGGC 60.897 66.667 23.83 7.37 46.93 6.53
126 127 3.391665 CTGAAGGATTCCGGCGGCT 62.392 63.158 23.83 11.30 46.93 5.52
127 128 2.897350 GAAGGATTCCGGCGGCTG 60.897 66.667 23.83 0.65 39.83 4.85
128 129 3.385749 GAAGGATTCCGGCGGCTGA 62.386 63.158 23.83 10.20 39.83 4.26
129 130 2.869503 GAAGGATTCCGGCGGCTGAA 62.870 60.000 23.83 17.65 39.83 3.02
130 131 2.437716 GGATTCCGGCGGCTGAAA 60.438 61.111 23.83 11.11 0.00 2.69
131 132 2.472909 GGATTCCGGCGGCTGAAAG 61.473 63.158 23.83 0.00 0.00 2.62
132 133 1.449601 GATTCCGGCGGCTGAAAGA 60.450 57.895 23.83 0.00 34.07 2.52
133 134 1.432270 GATTCCGGCGGCTGAAAGAG 61.432 60.000 23.83 0.00 34.07 2.85
134 135 1.899437 ATTCCGGCGGCTGAAAGAGA 61.899 55.000 23.83 0.00 34.07 3.10
135 136 2.507110 TTCCGGCGGCTGAAAGAGAG 62.507 60.000 23.83 0.00 34.07 3.20
136 137 2.262915 CGGCGGCTGAAAGAGAGT 59.737 61.111 7.61 0.00 34.07 3.24
137 138 1.511305 CGGCGGCTGAAAGAGAGTA 59.489 57.895 7.61 0.00 34.07 2.59
138 139 0.108804 CGGCGGCTGAAAGAGAGTAA 60.109 55.000 7.61 0.00 34.07 2.24
139 140 1.671850 CGGCGGCTGAAAGAGAGTAAA 60.672 52.381 7.61 0.00 34.07 2.01
140 141 2.633488 GGCGGCTGAAAGAGAGTAAAT 58.367 47.619 0.00 0.00 34.07 1.40
141 142 3.737047 CGGCGGCTGAAAGAGAGTAAATA 60.737 47.826 7.61 0.00 34.07 1.40
142 143 3.804873 GGCGGCTGAAAGAGAGTAAATAG 59.195 47.826 0.00 0.00 34.07 1.73
143 144 4.441634 GGCGGCTGAAAGAGAGTAAATAGA 60.442 45.833 0.00 0.00 34.07 1.98
144 145 5.109903 GCGGCTGAAAGAGAGTAAATAGAA 58.890 41.667 0.00 0.00 34.07 2.10
145 146 5.581085 GCGGCTGAAAGAGAGTAAATAGAAA 59.419 40.000 0.00 0.00 34.07 2.52
146 147 6.237969 GCGGCTGAAAGAGAGTAAATAGAAAG 60.238 42.308 0.00 0.00 34.07 2.62
147 148 7.036220 CGGCTGAAAGAGAGTAAATAGAAAGA 58.964 38.462 0.00 0.00 34.07 2.52
148 149 7.545965 CGGCTGAAAGAGAGTAAATAGAAAGAA 59.454 37.037 0.00 0.00 34.07 2.52
149 150 9.220767 GGCTGAAAGAGAGTAAATAGAAAGAAA 57.779 33.333 0.00 0.00 34.07 2.52
155 156 9.561069 AAGAGAGTAAATAGAAAGAAACAAGCA 57.439 29.630 0.00 0.00 0.00 3.91
156 157 9.561069 AGAGAGTAAATAGAAAGAAACAAGCAA 57.439 29.630 0.00 0.00 0.00 3.91
165 166 9.899226 ATAGAAAGAAACAAGCAATTAGTCAAC 57.101 29.630 0.00 0.00 0.00 3.18
166 167 7.771183 AGAAAGAAACAAGCAATTAGTCAACA 58.229 30.769 0.00 0.00 0.00 3.33
167 168 7.917505 AGAAAGAAACAAGCAATTAGTCAACAG 59.082 33.333 0.00 0.00 0.00 3.16
168 169 6.699575 AGAAACAAGCAATTAGTCAACAGT 57.300 33.333 0.00 0.00 0.00 3.55
169 170 7.100458 AGAAACAAGCAATTAGTCAACAGTT 57.900 32.000 0.00 0.00 0.00 3.16
170 171 6.974622 AGAAACAAGCAATTAGTCAACAGTTG 59.025 34.615 6.99 6.99 0.00 3.16
171 172 5.835113 ACAAGCAATTAGTCAACAGTTGT 57.165 34.783 13.14 0.00 0.00 3.32
172 173 5.821204 ACAAGCAATTAGTCAACAGTTGTC 58.179 37.500 13.14 7.78 0.00 3.18
173 174 5.215160 CAAGCAATTAGTCAACAGTTGTCC 58.785 41.667 13.14 5.53 0.00 4.02
174 175 4.718961 AGCAATTAGTCAACAGTTGTCCT 58.281 39.130 13.14 12.09 0.00 3.85
182 183 4.454948 CAGTTGTCCTGTGGCGAA 57.545 55.556 0.00 0.00 36.37 4.70
183 184 2.238353 CAGTTGTCCTGTGGCGAAG 58.762 57.895 0.00 0.00 36.37 3.79
184 185 0.532862 CAGTTGTCCTGTGGCGAAGT 60.533 55.000 0.00 0.00 36.37 3.01
185 186 0.532862 AGTTGTCCTGTGGCGAAGTG 60.533 55.000 0.00 0.00 0.00 3.16
186 187 1.227823 TTGTCCTGTGGCGAAGTGG 60.228 57.895 0.00 0.00 0.00 4.00
187 188 1.978455 TTGTCCTGTGGCGAAGTGGT 61.978 55.000 0.00 0.00 0.00 4.16
188 189 1.227853 GTCCTGTGGCGAAGTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
189 190 0.034337 GTCCTGTGGCGAAGTGGTTA 59.966 55.000 0.00 0.00 0.00 2.85
190 191 0.981183 TCCTGTGGCGAAGTGGTTAT 59.019 50.000 0.00 0.00 0.00 1.89
191 192 1.086696 CCTGTGGCGAAGTGGTTATG 58.913 55.000 0.00 0.00 0.00 1.90
192 193 1.086696 CTGTGGCGAAGTGGTTATGG 58.913 55.000 0.00 0.00 0.00 2.74
193 194 0.398696 TGTGGCGAAGTGGTTATGGT 59.601 50.000 0.00 0.00 0.00 3.55
194 195 1.084289 GTGGCGAAGTGGTTATGGTC 58.916 55.000 0.00 0.00 0.00 4.02
195 196 0.687920 TGGCGAAGTGGTTATGGTCA 59.312 50.000 0.00 0.00 0.00 4.02
196 197 1.280710 TGGCGAAGTGGTTATGGTCAT 59.719 47.619 0.00 0.00 0.00 3.06
197 198 2.290641 TGGCGAAGTGGTTATGGTCATT 60.291 45.455 0.00 0.00 0.00 2.57
198 199 2.097466 GGCGAAGTGGTTATGGTCATTG 59.903 50.000 0.00 0.00 0.00 2.82
199 200 2.097466 GCGAAGTGGTTATGGTCATTGG 59.903 50.000 0.00 0.00 0.00 3.16
200 201 2.682856 CGAAGTGGTTATGGTCATTGGG 59.317 50.000 0.00 0.00 0.00 4.12
201 202 3.621214 CGAAGTGGTTATGGTCATTGGGA 60.621 47.826 0.00 0.00 0.00 4.37
202 203 4.536765 GAAGTGGTTATGGTCATTGGGAT 58.463 43.478 0.00 0.00 0.00 3.85
203 204 4.608170 AGTGGTTATGGTCATTGGGATT 57.392 40.909 0.00 0.00 0.00 3.01
204 205 4.280819 AGTGGTTATGGTCATTGGGATTG 58.719 43.478 0.00 0.00 0.00 2.67
205 206 4.017591 AGTGGTTATGGTCATTGGGATTGA 60.018 41.667 0.00 0.00 0.00 2.57
206 207 4.709397 GTGGTTATGGTCATTGGGATTGAA 59.291 41.667 0.00 0.00 0.00 2.69
207 208 4.709397 TGGTTATGGTCATTGGGATTGAAC 59.291 41.667 0.00 0.00 0.00 3.18
208 209 4.202010 GGTTATGGTCATTGGGATTGAACG 60.202 45.833 0.00 0.00 33.37 3.95
209 210 2.869101 TGGTCATTGGGATTGAACGA 57.131 45.000 0.00 0.00 33.37 3.85
210 211 2.432444 TGGTCATTGGGATTGAACGAC 58.568 47.619 0.00 0.00 33.37 4.34
211 212 2.224646 TGGTCATTGGGATTGAACGACA 60.225 45.455 0.00 0.00 33.37 4.35
212 213 3.016736 GGTCATTGGGATTGAACGACAT 58.983 45.455 0.00 0.00 0.00 3.06
213 214 3.181497 GGTCATTGGGATTGAACGACATG 60.181 47.826 0.00 0.00 0.00 3.21
214 215 3.016031 TCATTGGGATTGAACGACATGG 58.984 45.455 0.00 0.00 0.00 3.66
215 216 2.577606 TTGGGATTGAACGACATGGT 57.422 45.000 0.00 0.00 0.00 3.55
216 217 2.107950 TGGGATTGAACGACATGGTC 57.892 50.000 0.00 0.00 0.00 4.02
225 226 4.496670 GACATGGTCGGGAGTTCG 57.503 61.111 0.00 0.00 0.00 3.95
226 227 1.888018 GACATGGTCGGGAGTTCGA 59.112 57.895 0.00 0.00 36.76 3.71
237 238 3.325816 GAGTTCGACTCCGGCTTAC 57.674 57.895 0.00 0.00 39.28 2.34
238 239 0.522915 GAGTTCGACTCCGGCTTACG 60.523 60.000 0.00 0.00 39.28 3.18
239 240 2.157073 GTTCGACTCCGGCTTACGC 61.157 63.158 0.00 0.00 42.52 4.42
240 241 2.628696 TTCGACTCCGGCTTACGCA 61.629 57.895 0.00 0.00 42.52 5.24
241 242 1.940883 TTCGACTCCGGCTTACGCAT 61.941 55.000 0.00 0.00 42.52 4.73
242 243 1.518572 CGACTCCGGCTTACGCATT 60.519 57.895 0.00 0.00 42.52 3.56
243 244 1.082117 CGACTCCGGCTTACGCATTT 61.082 55.000 0.00 0.00 42.52 2.32
244 245 1.084289 GACTCCGGCTTACGCATTTT 58.916 50.000 0.00 0.00 42.52 1.82
245 246 1.467342 GACTCCGGCTTACGCATTTTT 59.533 47.619 0.00 0.00 42.52 1.94
277 278 9.607285 CGTTTTATAGAATAAACATACATGGGC 57.393 33.333 0.00 0.00 34.68 5.36
278 279 9.908152 GTTTTATAGAATAAACATACATGGGCC 57.092 33.333 0.00 0.00 35.02 5.80
279 280 7.915293 TTATAGAATAAACATACATGGGCCG 57.085 36.000 0.00 0.00 0.00 6.13
280 281 3.486383 AGAATAAACATACATGGGCCGG 58.514 45.455 0.00 0.00 0.00 6.13
281 282 1.616159 ATAAACATACATGGGCCGGC 58.384 50.000 21.18 21.18 0.00 6.13
282 283 0.466555 TAAACATACATGGGCCGGCC 60.467 55.000 38.57 38.57 0.00 6.13
312 313 4.247380 GGAGGGGGATCGCTGCAG 62.247 72.222 10.11 10.11 42.37 4.41
313 314 4.247380 GAGGGGGATCGCTGCAGG 62.247 72.222 17.12 5.82 36.23 4.85
345 346 0.108520 AACGAAGCGCCGAATAGGAA 60.109 50.000 13.02 0.00 45.00 3.36
346 347 0.108520 ACGAAGCGCCGAATAGGAAA 60.109 50.000 13.02 0.00 45.00 3.13
352 353 0.107831 CGCCGAATAGGAAATCCCCA 59.892 55.000 0.00 0.00 45.00 4.96
356 357 3.477530 CCGAATAGGAAATCCCCAACTC 58.522 50.000 0.00 0.00 45.00 3.01
367 369 4.713792 ATCCCCAACTCATCCATCTTAC 57.286 45.455 0.00 0.00 0.00 2.34
373 375 5.248640 CCAACTCATCCATCTTACAGTTGT 58.751 41.667 8.40 0.00 39.29 3.32
374 376 5.122869 CCAACTCATCCATCTTACAGTTGTG 59.877 44.000 8.40 0.00 39.29 3.33
375 377 4.836825 ACTCATCCATCTTACAGTTGTGG 58.163 43.478 0.00 0.00 0.00 4.17
376 378 4.194640 CTCATCCATCTTACAGTTGTGGG 58.805 47.826 0.00 0.00 0.00 4.61
377 379 3.587061 TCATCCATCTTACAGTTGTGGGT 59.413 43.478 0.00 0.00 0.00 4.51
380 382 2.813754 CCATCTTACAGTTGTGGGTGTG 59.186 50.000 0.00 0.00 0.00 3.82
399 401 1.627550 GCTGTTCTTCGCCGTCTTCC 61.628 60.000 0.00 0.00 0.00 3.46
400 402 0.319555 CTGTTCTTCGCCGTCTTCCA 60.320 55.000 0.00 0.00 0.00 3.53
471 473 3.249189 GTCCAGGAGTGGGCCACA 61.249 66.667 36.28 13.83 43.45 4.17
480 482 1.228552 GTGGGCCACACCAGAACAT 60.229 57.895 31.26 0.00 44.49 2.71
488 490 3.873801 GCCACACCAGAACATATTCCAGT 60.874 47.826 0.00 0.00 35.18 4.00
489 491 3.941483 CCACACCAGAACATATTCCAGTC 59.059 47.826 0.00 0.00 35.18 3.51
561 566 0.179004 AAAAGGTCCATGCACCGACA 60.179 50.000 14.97 0.00 41.90 4.35
568 573 2.590291 ATGCACCGACAACGCACA 60.590 55.556 0.00 0.00 38.73 4.57
576 581 1.278337 GACAACGCACACATTCGCA 59.722 52.632 0.00 0.00 0.00 5.10
674 687 4.473520 CGTCGATGGGCTGGCCTT 62.474 66.667 21.72 15.28 36.10 4.35
685 698 1.478288 GGCTGGCCTTGAGATAGCAAT 60.478 52.381 3.32 0.00 36.15 3.56
692 705 4.340381 GGCCTTGAGATAGCAATGACAATT 59.660 41.667 0.00 0.00 0.00 2.32
694 707 5.066893 GCCTTGAGATAGCAATGACAATTCA 59.933 40.000 0.00 0.00 35.73 2.57
761 775 4.610228 CCCCCTCCTTTCCTTCCT 57.390 61.111 0.00 0.00 0.00 3.36
762 776 2.806566 CCCCCTCCTTTCCTTCCTT 58.193 57.895 0.00 0.00 0.00 3.36
763 777 0.626382 CCCCCTCCTTTCCTTCCTTC 59.374 60.000 0.00 0.00 0.00 3.46
764 778 0.626382 CCCCTCCTTTCCTTCCTTCC 59.374 60.000 0.00 0.00 0.00 3.46
803 817 1.344942 CTCGTCGCCGTTCCTTTCTG 61.345 60.000 0.00 0.00 35.01 3.02
841 855 3.470888 CATTCCCCTCCCGCTCGT 61.471 66.667 0.00 0.00 0.00 4.18
904 924 1.222115 GCGTCCACGAGCTTGTTTCT 61.222 55.000 3.02 0.00 43.02 2.52
905 925 0.508641 CGTCCACGAGCTTGTTTCTG 59.491 55.000 3.02 0.00 43.02 3.02
906 926 1.865865 GTCCACGAGCTTGTTTCTGA 58.134 50.000 3.02 0.00 0.00 3.27
907 927 2.417719 GTCCACGAGCTTGTTTCTGAT 58.582 47.619 3.02 0.00 0.00 2.90
908 928 2.413453 GTCCACGAGCTTGTTTCTGATC 59.587 50.000 3.02 0.00 0.00 2.92
909 929 1.734465 CCACGAGCTTGTTTCTGATCC 59.266 52.381 3.02 0.00 0.00 3.36
910 930 1.391485 CACGAGCTTGTTTCTGATCCG 59.609 52.381 3.02 0.00 0.00 4.18
911 931 1.000955 ACGAGCTTGTTTCTGATCCGT 59.999 47.619 0.00 0.00 0.00 4.69
912 932 1.391485 CGAGCTTGTTTCTGATCCGTG 59.609 52.381 0.00 0.00 0.00 4.94
1175 1207 2.431023 CCCTCCAGGTACCATCTCG 58.569 63.158 15.94 0.00 0.00 4.04
1176 1208 1.742768 CCTCCAGGTACCATCTCGC 59.257 63.158 15.94 0.00 0.00 5.03
1177 1209 1.742768 CTCCAGGTACCATCTCGCC 59.257 63.158 15.94 0.00 0.00 5.54
1250 1282 5.069119 TCCGTCTATCTGTGATACAATTGCT 59.931 40.000 5.05 0.00 0.00 3.91
1281 1323 2.077413 TTGAAATGCAAATGCCGTCC 57.923 45.000 2.46 0.00 41.18 4.79
1313 1355 3.964875 GCGCTGGGTTGTGTGTGG 61.965 66.667 0.00 0.00 0.00 4.17
1314 1356 3.286751 CGCTGGGTTGTGTGTGGG 61.287 66.667 0.00 0.00 0.00 4.61
1315 1357 2.123897 GCTGGGTTGTGTGTGGGT 60.124 61.111 0.00 0.00 0.00 4.51
1316 1358 2.489275 GCTGGGTTGTGTGTGGGTG 61.489 63.158 0.00 0.00 0.00 4.61
1317 1359 1.827789 CTGGGTTGTGTGTGGGTGG 60.828 63.158 0.00 0.00 0.00 4.61
1360 1402 1.335872 CCGGTTGAATTTGCAGTCACC 60.336 52.381 0.00 0.00 0.00 4.02
1484 1526 1.615883 CTGAGCGGACACCTAGCATAT 59.384 52.381 0.00 0.00 0.00 1.78
1614 1656 2.211353 GTCAACGAGACCCTATCTGC 57.789 55.000 0.00 0.00 41.56 4.26
1815 1857 0.106469 TTGGGTTGGCACTGCACTAA 60.106 50.000 2.82 0.00 0.00 2.24
1955 2029 5.986135 CCCTATGATTTGCACTACAGACTAC 59.014 44.000 0.00 0.00 0.00 2.73
2105 2179 5.698104 TCATTATGTGATCCTGCCTGAAAT 58.302 37.500 0.00 0.00 0.00 2.17
2110 2184 4.346730 TGTGATCCTGCCTGAAATTCATT 58.653 39.130 0.00 0.00 0.00 2.57
2300 2374 7.177878 TCCTTCTAGCTTTTCAATCAGGATTT 58.822 34.615 0.00 0.00 0.00 2.17
2308 2382 9.301897 AGCTTTTCAATCAGGATTTAGTAACTT 57.698 29.630 0.00 0.00 0.00 2.66
2313 2387 7.110155 TCAATCAGGATTTAGTAACTTGGGAC 58.890 38.462 0.00 0.00 0.00 4.46
2317 2391 4.080526 AGGATTTAGTAACTTGGGACGCAT 60.081 41.667 0.00 0.00 0.00 4.73
2318 2392 4.272748 GGATTTAGTAACTTGGGACGCATC 59.727 45.833 0.00 0.00 0.00 3.91
2319 2393 3.965379 TTAGTAACTTGGGACGCATCA 57.035 42.857 0.00 0.00 0.00 3.07
2320 2394 4.481368 TTAGTAACTTGGGACGCATCAT 57.519 40.909 0.00 0.00 0.00 2.45
2321 2395 5.601583 TTAGTAACTTGGGACGCATCATA 57.398 39.130 0.00 0.00 0.00 2.15
2322 2396 4.689612 AGTAACTTGGGACGCATCATAT 57.310 40.909 0.00 0.00 0.00 1.78
2323 2397 5.036117 AGTAACTTGGGACGCATCATATT 57.964 39.130 0.00 0.00 0.00 1.28
2324 2398 5.437060 AGTAACTTGGGACGCATCATATTT 58.563 37.500 0.00 0.00 0.00 1.40
2325 2399 4.637483 AACTTGGGACGCATCATATTTG 57.363 40.909 0.00 0.00 0.00 2.32
2326 2400 3.620488 ACTTGGGACGCATCATATTTGT 58.380 40.909 0.00 0.00 0.00 2.83
2327 2401 4.776349 ACTTGGGACGCATCATATTTGTA 58.224 39.130 0.00 0.00 0.00 2.41
2328 2402 4.574828 ACTTGGGACGCATCATATTTGTAC 59.425 41.667 0.00 0.00 0.00 2.90
2329 2403 4.143986 TGGGACGCATCATATTTGTACA 57.856 40.909 0.00 0.00 0.00 2.90
2330 2404 4.713553 TGGGACGCATCATATTTGTACAT 58.286 39.130 0.00 0.00 0.00 2.29
2331 2405 5.129634 TGGGACGCATCATATTTGTACATT 58.870 37.500 0.00 0.00 0.00 2.71
2332 2406 6.292150 TGGGACGCATCATATTTGTACATTA 58.708 36.000 0.00 0.00 0.00 1.90
2333 2407 6.768381 TGGGACGCATCATATTTGTACATTAA 59.232 34.615 0.00 0.00 0.00 1.40
2334 2408 7.075741 GGGACGCATCATATTTGTACATTAAC 58.924 38.462 0.00 0.00 0.00 2.01
2335 2409 6.790350 GGACGCATCATATTTGTACATTAACG 59.210 38.462 0.00 0.00 0.00 3.18
2336 2410 6.133392 ACGCATCATATTTGTACATTAACGC 58.867 36.000 0.00 0.00 0.00 4.84
2337 2411 6.132724 CGCATCATATTTGTACATTAACGCA 58.867 36.000 0.00 0.00 0.00 5.24
2338 2412 6.630840 CGCATCATATTTGTACATTAACGCAA 59.369 34.615 0.00 0.00 0.00 4.85
2339 2413 7.323416 CGCATCATATTTGTACATTAACGCAAT 59.677 33.333 0.00 0.00 0.00 3.56
2354 2428 9.762062 CATTAACGCAATGTAACAAGTATGTAA 57.238 29.630 2.88 0.00 38.06 2.41
2381 2455 6.949352 ATTTAATGTGGATCTTAGCACTGG 57.051 37.500 0.00 0.00 0.00 4.00
2382 2456 5.692115 TTAATGTGGATCTTAGCACTGGA 57.308 39.130 0.00 0.00 0.00 3.86
2383 2457 4.574674 AATGTGGATCTTAGCACTGGAA 57.425 40.909 0.00 0.00 0.00 3.53
2384 2458 4.785346 ATGTGGATCTTAGCACTGGAAT 57.215 40.909 0.00 0.00 0.00 3.01
2385 2459 5.894298 ATGTGGATCTTAGCACTGGAATA 57.106 39.130 0.00 0.00 0.00 1.75
2386 2460 5.692115 TGTGGATCTTAGCACTGGAATAA 57.308 39.130 0.00 0.00 0.00 1.40
2387 2461 6.252599 TGTGGATCTTAGCACTGGAATAAT 57.747 37.500 0.00 0.00 0.00 1.28
2388 2462 7.373617 TGTGGATCTTAGCACTGGAATAATA 57.626 36.000 0.00 0.00 0.00 0.98
2389 2463 7.217200 TGTGGATCTTAGCACTGGAATAATAC 58.783 38.462 0.00 0.00 0.00 1.89
2390 2464 7.071196 TGTGGATCTTAGCACTGGAATAATACT 59.929 37.037 0.00 0.00 0.00 2.12
2391 2465 7.600752 GTGGATCTTAGCACTGGAATAATACTC 59.399 40.741 0.00 0.00 0.00 2.59
2392 2466 7.100409 GGATCTTAGCACTGGAATAATACTCC 58.900 42.308 0.00 0.00 0.00 3.85
2393 2467 7.038658 GGATCTTAGCACTGGAATAATACTCCT 60.039 40.741 0.00 0.00 33.77 3.69
2394 2468 7.676683 TCTTAGCACTGGAATAATACTCCTT 57.323 36.000 0.00 0.00 33.77 3.36
2395 2469 8.090788 TCTTAGCACTGGAATAATACTCCTTT 57.909 34.615 0.00 0.00 33.77 3.11
2396 2470 8.204836 TCTTAGCACTGGAATAATACTCCTTTC 58.795 37.037 0.00 0.00 33.77 2.62
2397 2471 5.685728 AGCACTGGAATAATACTCCTTTCC 58.314 41.667 0.00 0.00 38.48 3.13
2398 2472 5.430089 AGCACTGGAATAATACTCCTTTCCT 59.570 40.000 0.00 0.00 38.73 3.36
2399 2473 6.615726 AGCACTGGAATAATACTCCTTTCCTA 59.384 38.462 0.00 0.00 38.73 2.94
2400 2474 7.293535 AGCACTGGAATAATACTCCTTTCCTAT 59.706 37.037 0.00 0.00 38.73 2.57
2401 2475 7.939588 GCACTGGAATAATACTCCTTTCCTATT 59.060 37.037 0.00 0.00 38.73 1.73
2402 2476 9.277783 CACTGGAATAATACTCCTTTCCTATTG 57.722 37.037 0.00 0.00 38.73 1.90
2403 2477 8.440771 ACTGGAATAATACTCCTTTCCTATTGG 58.559 37.037 0.00 0.00 38.73 3.16
2470 2670 8.770438 TGAGCAGAAGTTTAATTTTGTTTTGT 57.230 26.923 0.00 0.00 0.00 2.83
3456 3665 6.585695 AATGCATACCCATGAATCATTCTC 57.414 37.500 0.00 0.00 27.99 2.87
3467 3676 0.179062 ATCATTCTCGCTGTGCCTCC 60.179 55.000 0.00 0.00 0.00 4.30
3495 3704 7.281774 ACCATTAGTGATTTCATGATGTGTCTC 59.718 37.037 0.00 0.00 0.00 3.36
3510 3719 1.337167 TGTCTCATTGCTCGACCTGTG 60.337 52.381 0.00 0.00 0.00 3.66
3518 3727 2.639065 TGCTCGACCTGTGTTCTTTTT 58.361 42.857 0.00 0.00 0.00 1.94
3571 3780 9.107367 GAATTTTCACGTCTATGTTTCTTGAAG 57.893 33.333 0.00 0.00 0.00 3.02
3594 4076 1.656095 GATGAGAAGTCTTTCGTGGCG 59.344 52.381 0.00 0.00 38.38 5.69
3672 4160 7.669089 TTGTCCCAGTTCTCCTTTTATTTTT 57.331 32.000 0.00 0.00 0.00 1.94
3744 4232 6.049149 ACCTGTCATAACACAGTATACATGC 58.951 40.000 5.50 0.00 42.10 4.06
3874 4394 3.499737 GTCGCATCGGGTGGCTTG 61.500 66.667 0.00 0.00 0.00 4.01
3897 4417 3.903783 GCACGCTGGCCTGAAATA 58.096 55.556 14.77 0.00 0.00 1.40
3949 4503 0.752743 TGTTCTGCTTGCCTGCAACT 60.753 50.000 0.00 0.00 42.83 3.16
3953 4507 2.086869 TCTGCTTGCCTGCAACTATTC 58.913 47.619 0.00 0.00 42.83 1.75
3957 4511 2.729156 GCTTGCCTGCAACTATTCGTTC 60.729 50.000 0.00 0.00 32.27 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 6.183360 GGCGGTTTTATTTGGGTTTTCTTTTT 60.183 34.615 0.00 0.00 0.00 1.94
22 23 5.297278 GGCGGTTTTATTTGGGTTTTCTTTT 59.703 36.000 0.00 0.00 0.00 2.27
23 24 4.817464 GGCGGTTTTATTTGGGTTTTCTTT 59.183 37.500 0.00 0.00 0.00 2.52
24 25 4.382291 GGCGGTTTTATTTGGGTTTTCTT 58.618 39.130 0.00 0.00 0.00 2.52
25 26 3.244284 GGGCGGTTTTATTTGGGTTTTCT 60.244 43.478 0.00 0.00 0.00 2.52
26 27 3.068560 GGGCGGTTTTATTTGGGTTTTC 58.931 45.455 0.00 0.00 0.00 2.29
27 28 2.224572 GGGGCGGTTTTATTTGGGTTTT 60.225 45.455 0.00 0.00 0.00 2.43
28 29 1.348366 GGGGCGGTTTTATTTGGGTTT 59.652 47.619 0.00 0.00 0.00 3.27
29 30 0.978151 GGGGCGGTTTTATTTGGGTT 59.022 50.000 0.00 0.00 0.00 4.11
30 31 1.252215 CGGGGCGGTTTTATTTGGGT 61.252 55.000 0.00 0.00 0.00 4.51
31 32 1.513622 CGGGGCGGTTTTATTTGGG 59.486 57.895 0.00 0.00 0.00 4.12
32 33 1.513622 CCGGGGCGGTTTTATTTGG 59.486 57.895 0.00 0.00 42.73 3.28
43 44 2.466140 CGTGGTAATTTCCGGGGCG 61.466 63.158 0.00 0.00 0.00 6.13
44 45 0.677414 TTCGTGGTAATTTCCGGGGC 60.677 55.000 0.00 0.00 0.00 5.80
45 46 1.944709 GATTCGTGGTAATTTCCGGGG 59.055 52.381 0.00 0.00 0.00 5.73
46 47 1.595794 CGATTCGTGGTAATTTCCGGG 59.404 52.381 0.00 0.00 0.00 5.73
47 48 1.595794 CCGATTCGTGGTAATTTCCGG 59.404 52.381 5.20 0.00 0.00 5.14
48 49 1.595794 CCCGATTCGTGGTAATTTCCG 59.404 52.381 5.20 0.00 0.00 4.30
49 50 2.908916 TCCCGATTCGTGGTAATTTCC 58.091 47.619 5.20 0.00 0.00 3.13
50 51 6.607735 TTTATCCCGATTCGTGGTAATTTC 57.392 37.500 5.20 0.00 0.00 2.17
51 52 6.183360 GGTTTTATCCCGATTCGTGGTAATTT 60.183 38.462 5.20 0.00 0.00 1.82
52 53 5.297527 GGTTTTATCCCGATTCGTGGTAATT 59.702 40.000 5.20 0.00 0.00 1.40
53 54 4.818005 GGTTTTATCCCGATTCGTGGTAAT 59.182 41.667 5.20 0.39 0.00 1.89
54 55 4.190772 GGTTTTATCCCGATTCGTGGTAA 58.809 43.478 5.20 0.00 0.00 2.85
55 56 3.795877 GGTTTTATCCCGATTCGTGGTA 58.204 45.455 5.20 0.00 0.00 3.25
56 57 2.635714 GGTTTTATCCCGATTCGTGGT 58.364 47.619 5.20 0.00 0.00 4.16
65 66 0.812549 CCCAAACCGGTTTTATCCCG 59.187 55.000 29.74 16.79 45.07 5.14
66 67 2.219080 TCCCAAACCGGTTTTATCCC 57.781 50.000 29.74 0.00 0.00 3.85
67 68 2.094390 GCTTCCCAAACCGGTTTTATCC 60.094 50.000 29.74 12.26 0.00 2.59
68 69 2.823747 AGCTTCCCAAACCGGTTTTATC 59.176 45.455 29.74 14.84 0.00 1.75
69 70 2.884320 AGCTTCCCAAACCGGTTTTAT 58.116 42.857 29.74 7.06 0.00 1.40
70 71 2.368311 AGCTTCCCAAACCGGTTTTA 57.632 45.000 29.74 15.33 0.00 1.52
71 72 1.411246 GAAGCTTCCCAAACCGGTTTT 59.589 47.619 29.74 13.06 0.00 2.43
72 73 1.037493 GAAGCTTCCCAAACCGGTTT 58.963 50.000 26.87 26.87 0.00 3.27
73 74 0.185175 AGAAGCTTCCCAAACCGGTT 59.815 50.000 22.81 15.86 0.00 4.44
74 75 0.537371 CAGAAGCTTCCCAAACCGGT 60.537 55.000 22.81 0.00 0.00 5.28
75 76 1.244019 CCAGAAGCTTCCCAAACCGG 61.244 60.000 22.81 0.00 0.00 5.28
76 77 0.250727 TCCAGAAGCTTCCCAAACCG 60.251 55.000 22.81 3.13 0.00 4.44
77 78 1.889170 CTTCCAGAAGCTTCCCAAACC 59.111 52.381 22.81 0.00 0.00 3.27
93 94 2.297315 CCTTCAGTTTTGGGAAGCTTCC 59.703 50.000 33.67 33.67 46.82 3.46
94 95 3.222603 TCCTTCAGTTTTGGGAAGCTTC 58.777 45.455 18.54 18.54 39.30 3.86
95 96 3.312736 TCCTTCAGTTTTGGGAAGCTT 57.687 42.857 0.00 0.00 39.30 3.74
96 97 3.532641 ATCCTTCAGTTTTGGGAAGCT 57.467 42.857 0.00 0.00 39.30 3.74
97 98 3.056536 GGAATCCTTCAGTTTTGGGAAGC 60.057 47.826 0.00 0.00 39.30 3.86
98 99 3.191371 CGGAATCCTTCAGTTTTGGGAAG 59.809 47.826 0.00 0.00 40.11 3.46
99 100 3.153919 CGGAATCCTTCAGTTTTGGGAA 58.846 45.455 0.00 0.00 0.00 3.97
100 101 2.554344 CCGGAATCCTTCAGTTTTGGGA 60.554 50.000 0.00 0.00 0.00 4.37
101 102 1.818674 CCGGAATCCTTCAGTTTTGGG 59.181 52.381 0.00 0.00 0.00 4.12
102 103 1.202348 GCCGGAATCCTTCAGTTTTGG 59.798 52.381 5.05 0.00 0.00 3.28
103 104 1.135689 CGCCGGAATCCTTCAGTTTTG 60.136 52.381 5.05 0.00 0.00 2.44
104 105 1.165270 CGCCGGAATCCTTCAGTTTT 58.835 50.000 5.05 0.00 0.00 2.43
105 106 0.676782 CCGCCGGAATCCTTCAGTTT 60.677 55.000 5.05 0.00 0.00 2.66
106 107 1.078426 CCGCCGGAATCCTTCAGTT 60.078 57.895 5.05 0.00 0.00 3.16
107 108 2.584608 CCGCCGGAATCCTTCAGT 59.415 61.111 5.05 0.00 0.00 3.41
108 109 2.897350 GCCGCCGGAATCCTTCAG 60.897 66.667 7.68 0.00 0.00 3.02
109 110 3.399181 AGCCGCCGGAATCCTTCA 61.399 61.111 7.68 0.00 0.00 3.02
110 111 2.869503 TTCAGCCGCCGGAATCCTTC 62.870 60.000 7.68 0.00 0.00 3.46
111 112 2.478335 TTTCAGCCGCCGGAATCCTT 62.478 55.000 7.68 0.00 0.00 3.36
112 113 2.876368 CTTTCAGCCGCCGGAATCCT 62.876 60.000 7.68 0.00 0.00 3.24
113 114 2.437716 TTTCAGCCGCCGGAATCC 60.438 61.111 7.68 0.00 0.00 3.01
114 115 1.432270 CTCTTTCAGCCGCCGGAATC 61.432 60.000 7.68 0.00 0.00 2.52
115 116 1.450312 CTCTTTCAGCCGCCGGAAT 60.450 57.895 7.68 0.00 0.00 3.01
116 117 2.047274 CTCTTTCAGCCGCCGGAA 60.047 61.111 7.68 0.00 0.00 4.30
117 118 2.994995 TCTCTTTCAGCCGCCGGA 60.995 61.111 7.68 0.00 0.00 5.14
118 119 1.945354 TACTCTCTTTCAGCCGCCGG 61.945 60.000 0.00 0.00 0.00 6.13
119 120 0.108804 TTACTCTCTTTCAGCCGCCG 60.109 55.000 0.00 0.00 0.00 6.46
120 121 2.094762 TTTACTCTCTTTCAGCCGCC 57.905 50.000 0.00 0.00 0.00 6.13
121 122 4.683832 TCTATTTACTCTCTTTCAGCCGC 58.316 43.478 0.00 0.00 0.00 6.53
122 123 7.036220 TCTTTCTATTTACTCTCTTTCAGCCG 58.964 38.462 0.00 0.00 0.00 5.52
123 124 8.779354 TTCTTTCTATTTACTCTCTTTCAGCC 57.221 34.615 0.00 0.00 0.00 4.85
129 130 9.561069 TGCTTGTTTCTTTCTATTTACTCTCTT 57.439 29.630 0.00 0.00 0.00 2.85
130 131 9.561069 TTGCTTGTTTCTTTCTATTTACTCTCT 57.439 29.630 0.00 0.00 0.00 3.10
139 140 9.899226 GTTGACTAATTGCTTGTTTCTTTCTAT 57.101 29.630 0.00 0.00 0.00 1.98
140 141 8.898761 TGTTGACTAATTGCTTGTTTCTTTCTA 58.101 29.630 0.00 0.00 0.00 2.10
141 142 7.771183 TGTTGACTAATTGCTTGTTTCTTTCT 58.229 30.769 0.00 0.00 0.00 2.52
142 143 7.702348 ACTGTTGACTAATTGCTTGTTTCTTTC 59.298 33.333 0.00 0.00 0.00 2.62
143 144 7.547227 ACTGTTGACTAATTGCTTGTTTCTTT 58.453 30.769 0.00 0.00 0.00 2.52
144 145 7.100458 ACTGTTGACTAATTGCTTGTTTCTT 57.900 32.000 0.00 0.00 0.00 2.52
145 146 6.699575 ACTGTTGACTAATTGCTTGTTTCT 57.300 33.333 0.00 0.00 0.00 2.52
146 147 6.751888 ACAACTGTTGACTAATTGCTTGTTTC 59.248 34.615 26.00 0.00 0.00 2.78
147 148 6.630071 ACAACTGTTGACTAATTGCTTGTTT 58.370 32.000 26.00 0.00 0.00 2.83
148 149 6.207691 ACAACTGTTGACTAATTGCTTGTT 57.792 33.333 26.00 0.00 0.00 2.83
149 150 5.221048 GGACAACTGTTGACTAATTGCTTGT 60.221 40.000 26.00 0.00 0.00 3.16
150 151 5.009010 AGGACAACTGTTGACTAATTGCTTG 59.991 40.000 26.00 0.00 0.00 4.01
151 152 5.009010 CAGGACAACTGTTGACTAATTGCTT 59.991 40.000 26.00 0.10 42.42 3.91
152 153 4.516698 CAGGACAACTGTTGACTAATTGCT 59.483 41.667 26.00 10.64 42.42 3.91
153 154 4.787598 CAGGACAACTGTTGACTAATTGC 58.212 43.478 26.00 8.54 42.42 3.56
166 167 0.532862 CACTTCGCCACAGGACAACT 60.533 55.000 0.00 0.00 0.00 3.16
167 168 1.507141 CCACTTCGCCACAGGACAAC 61.507 60.000 0.00 0.00 0.00 3.32
168 169 1.227823 CCACTTCGCCACAGGACAA 60.228 57.895 0.00 0.00 0.00 3.18
169 170 1.978455 AACCACTTCGCCACAGGACA 61.978 55.000 0.00 0.00 0.00 4.02
170 171 0.034337 TAACCACTTCGCCACAGGAC 59.966 55.000 0.00 0.00 0.00 3.85
171 172 0.981183 ATAACCACTTCGCCACAGGA 59.019 50.000 0.00 0.00 0.00 3.86
172 173 1.086696 CATAACCACTTCGCCACAGG 58.913 55.000 0.00 0.00 0.00 4.00
173 174 1.086696 CCATAACCACTTCGCCACAG 58.913 55.000 0.00 0.00 0.00 3.66
174 175 0.398696 ACCATAACCACTTCGCCACA 59.601 50.000 0.00 0.00 0.00 4.17
175 176 1.084289 GACCATAACCACTTCGCCAC 58.916 55.000 0.00 0.00 0.00 5.01
176 177 0.687920 TGACCATAACCACTTCGCCA 59.312 50.000 0.00 0.00 0.00 5.69
177 178 2.038387 ATGACCATAACCACTTCGCC 57.962 50.000 0.00 0.00 0.00 5.54
178 179 2.097466 CCAATGACCATAACCACTTCGC 59.903 50.000 0.00 0.00 0.00 4.70
179 180 2.682856 CCCAATGACCATAACCACTTCG 59.317 50.000 0.00 0.00 0.00 3.79
180 181 3.963129 TCCCAATGACCATAACCACTTC 58.037 45.455 0.00 0.00 0.00 3.01
181 182 4.608170 ATCCCAATGACCATAACCACTT 57.392 40.909 0.00 0.00 0.00 3.16
182 183 4.017591 TCAATCCCAATGACCATAACCACT 60.018 41.667 0.00 0.00 0.00 4.00
183 184 4.277476 TCAATCCCAATGACCATAACCAC 58.723 43.478 0.00 0.00 0.00 4.16
184 185 4.599720 TCAATCCCAATGACCATAACCA 57.400 40.909 0.00 0.00 0.00 3.67
185 186 4.202010 CGTTCAATCCCAATGACCATAACC 60.202 45.833 0.00 0.00 0.00 2.85
186 187 4.638421 TCGTTCAATCCCAATGACCATAAC 59.362 41.667 0.00 0.00 0.00 1.89
187 188 4.638421 GTCGTTCAATCCCAATGACCATAA 59.362 41.667 0.00 0.00 34.81 1.90
188 189 4.196193 GTCGTTCAATCCCAATGACCATA 58.804 43.478 0.00 0.00 34.81 2.74
189 190 3.016736 GTCGTTCAATCCCAATGACCAT 58.983 45.455 0.00 0.00 34.81 3.55
190 191 2.224646 TGTCGTTCAATCCCAATGACCA 60.225 45.455 3.04 0.00 38.51 4.02
191 192 2.432444 TGTCGTTCAATCCCAATGACC 58.568 47.619 3.04 0.00 38.51 4.02
192 193 3.181497 CCATGTCGTTCAATCCCAATGAC 60.181 47.826 0.00 0.00 39.36 3.06
193 194 3.016031 CCATGTCGTTCAATCCCAATGA 58.984 45.455 0.00 0.00 0.00 2.57
194 195 2.754552 ACCATGTCGTTCAATCCCAATG 59.245 45.455 0.00 0.00 0.00 2.82
195 196 3.016736 GACCATGTCGTTCAATCCCAAT 58.983 45.455 0.00 0.00 0.00 3.16
196 197 2.432444 GACCATGTCGTTCAATCCCAA 58.568 47.619 0.00 0.00 0.00 4.12
197 198 2.107950 GACCATGTCGTTCAATCCCA 57.892 50.000 0.00 0.00 0.00 4.37
208 209 1.888018 TCGAACTCCCGACCATGTC 59.112 57.895 0.00 0.00 33.14 3.06
209 210 4.107029 TCGAACTCCCGACCATGT 57.893 55.556 0.00 0.00 33.14 3.21
219 220 0.522915 CGTAAGCCGGAGTCGAACTC 60.523 60.000 5.05 6.50 44.32 3.01
220 221 1.505353 CGTAAGCCGGAGTCGAACT 59.495 57.895 5.05 0.00 39.00 3.01
221 222 4.068302 CGTAAGCCGGAGTCGAAC 57.932 61.111 5.05 0.00 39.00 3.95
251 252 9.607285 GCCCATGTATGTTTATTCTATAAAACG 57.393 33.333 0.00 0.00 38.21 3.60
252 253 9.908152 GGCCCATGTATGTTTATTCTATAAAAC 57.092 33.333 0.00 0.00 36.38 2.43
253 254 8.788806 CGGCCCATGTATGTTTATTCTATAAAA 58.211 33.333 0.00 0.00 0.00 1.52
254 255 7.392113 CCGGCCCATGTATGTTTATTCTATAAA 59.608 37.037 0.00 0.00 0.00 1.40
255 256 6.882140 CCGGCCCATGTATGTTTATTCTATAA 59.118 38.462 0.00 0.00 0.00 0.98
256 257 6.411376 CCGGCCCATGTATGTTTATTCTATA 58.589 40.000 0.00 0.00 0.00 1.31
257 258 5.253330 CCGGCCCATGTATGTTTATTCTAT 58.747 41.667 0.00 0.00 0.00 1.98
258 259 4.647611 CCGGCCCATGTATGTTTATTCTA 58.352 43.478 0.00 0.00 0.00 2.10
259 260 3.486383 CCGGCCCATGTATGTTTATTCT 58.514 45.455 0.00 0.00 0.00 2.40
260 261 2.030274 GCCGGCCCATGTATGTTTATTC 60.030 50.000 18.11 0.00 0.00 1.75
261 262 1.960689 GCCGGCCCATGTATGTTTATT 59.039 47.619 18.11 0.00 0.00 1.40
262 263 1.616159 GCCGGCCCATGTATGTTTAT 58.384 50.000 18.11 0.00 0.00 1.40
263 264 0.466555 GGCCGGCCCATGTATGTTTA 60.467 55.000 36.64 0.00 0.00 2.01
264 265 1.756561 GGCCGGCCCATGTATGTTT 60.757 57.895 36.64 0.00 0.00 2.83
265 266 2.123897 GGCCGGCCCATGTATGTT 60.124 61.111 36.64 0.00 0.00 2.71
295 296 4.247380 CTGCAGCGATCCCCCTCC 62.247 72.222 0.00 0.00 0.00 4.30
296 297 4.247380 CCTGCAGCGATCCCCCTC 62.247 72.222 8.66 0.00 0.00 4.30
319 320 2.729491 GGCGCTTCGTTGGCAAAC 60.729 61.111 7.64 0.00 0.00 2.93
320 321 4.320928 CGGCGCTTCGTTGGCAAA 62.321 61.111 7.64 0.00 0.00 3.68
323 324 2.361427 CTATTCGGCGCTTCGTTGGC 62.361 60.000 7.64 0.00 0.00 4.52
324 325 1.636340 CTATTCGGCGCTTCGTTGG 59.364 57.895 7.64 0.00 0.00 3.77
325 326 0.804544 TCCTATTCGGCGCTTCGTTG 60.805 55.000 7.64 0.00 0.00 4.10
326 327 0.108520 TTCCTATTCGGCGCTTCGTT 60.109 50.000 7.64 0.00 0.00 3.85
327 328 0.108520 TTTCCTATTCGGCGCTTCGT 60.109 50.000 7.64 0.00 0.00 3.85
328 329 1.192534 GATTTCCTATTCGGCGCTTCG 59.807 52.381 7.64 2.89 0.00 3.79
329 330 1.531578 GGATTTCCTATTCGGCGCTTC 59.468 52.381 7.64 0.00 0.00 3.86
330 331 1.594331 GGATTTCCTATTCGGCGCTT 58.406 50.000 7.64 0.00 0.00 4.68
331 332 0.250338 GGGATTTCCTATTCGGCGCT 60.250 55.000 7.64 0.00 35.95 5.92
345 346 4.478317 TGTAAGATGGATGAGTTGGGGATT 59.522 41.667 0.00 0.00 0.00 3.01
346 347 4.047166 TGTAAGATGGATGAGTTGGGGAT 58.953 43.478 0.00 0.00 0.00 3.85
352 353 5.248640 CCACAACTGTAAGATGGATGAGTT 58.751 41.667 0.00 0.00 41.61 3.01
356 357 3.691118 CACCCACAACTGTAAGATGGATG 59.309 47.826 0.00 0.00 41.61 3.51
367 369 0.381801 GAACAGCACACCCACAACTG 59.618 55.000 0.00 0.00 0.00 3.16
373 375 1.891919 GCGAAGAACAGCACACCCA 60.892 57.895 0.00 0.00 0.00 4.51
374 376 2.617274 GGCGAAGAACAGCACACCC 61.617 63.158 0.00 0.00 34.54 4.61
375 377 2.946762 GGCGAAGAACAGCACACC 59.053 61.111 0.00 0.00 34.54 4.16
376 378 2.159272 GACGGCGAAGAACAGCACAC 62.159 60.000 16.62 0.00 34.54 3.82
377 379 1.954146 GACGGCGAAGAACAGCACA 60.954 57.895 16.62 0.00 34.54 4.57
380 382 1.627550 GGAAGACGGCGAAGAACAGC 61.628 60.000 16.62 0.00 0.00 4.40
453 455 3.249189 GTGGCCCACTCCTGGACA 61.249 66.667 6.63 0.00 40.55 4.02
471 473 3.189606 TGGGACTGGAATATGTTCTGGT 58.810 45.455 1.99 1.89 34.68 4.00
475 477 5.476945 ACAAAACTGGGACTGGAATATGTTC 59.523 40.000 0.00 0.00 0.00 3.18
480 482 4.506625 CCTGACAAAACTGGGACTGGAATA 60.507 45.833 0.00 0.00 0.00 1.75
544 549 0.889186 GTTGTCGGTGCATGGACCTT 60.889 55.000 30.70 0.00 33.35 3.50
552 557 3.568743 GTGTGCGTTGTCGGTGCA 61.569 61.111 0.00 0.00 37.56 4.57
561 566 2.637025 GGTGCGAATGTGTGCGTT 59.363 55.556 0.00 0.00 0.00 4.84
568 573 2.311688 GATCTCGGGGGTGCGAATGT 62.312 60.000 0.00 0.00 0.00 2.71
674 687 6.314648 GTGAGTGAATTGTCATTGCTATCTCA 59.685 38.462 0.00 0.00 35.80 3.27
685 698 1.069978 TGGCGAGTGAGTGAATTGTCA 59.930 47.619 0.00 0.00 0.00 3.58
692 705 4.361253 GCTTTGGCGAGTGAGTGA 57.639 55.556 0.00 0.00 0.00 3.41
764 778 3.093172 GAGGAGGGAAGCTGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
890 910 1.391485 CGGATCAGAAACAAGCTCGTG 59.609 52.381 0.00 0.00 0.00 4.35
896 916 1.806542 CCCACACGGATCAGAAACAAG 59.193 52.381 0.00 0.00 0.00 3.16
897 917 1.890876 CCCACACGGATCAGAAACAA 58.109 50.000 0.00 0.00 0.00 2.83
898 918 0.605319 GCCCACACGGATCAGAAACA 60.605 55.000 0.00 0.00 0.00 2.83
899 919 0.321653 AGCCCACACGGATCAGAAAC 60.322 55.000 0.00 0.00 0.00 2.78
904 924 3.315142 GAGCAGCCCACACGGATCA 62.315 63.158 0.00 0.00 0.00 2.92
905 925 2.512515 GAGCAGCCCACACGGATC 60.513 66.667 0.00 0.00 0.00 3.36
906 926 2.202236 AATGAGCAGCCCACACGGAT 62.202 55.000 0.00 0.00 0.00 4.18
907 927 2.894257 AATGAGCAGCCCACACGGA 61.894 57.895 0.00 0.00 0.00 4.69
908 928 2.360350 AATGAGCAGCCCACACGG 60.360 61.111 0.00 0.00 0.00 4.94
909 929 2.693762 CCAATGAGCAGCCCACACG 61.694 63.158 0.00 0.00 0.00 4.49
910 930 2.998279 GCCAATGAGCAGCCCACAC 61.998 63.158 0.00 0.00 0.00 3.82
911 931 2.677524 GCCAATGAGCAGCCCACA 60.678 61.111 0.00 0.00 0.00 4.17
912 932 3.455469 GGCCAATGAGCAGCCCAC 61.455 66.667 0.00 0.00 41.00 4.61
971 1003 3.959329 CTTCCTCCCTCCCCGTCGT 62.959 68.421 0.00 0.00 0.00 4.34
1250 1282 4.004196 TGCATTTCAATTCACATGGCAA 57.996 36.364 0.00 0.00 0.00 4.52
1281 1323 1.091771 AGCGCGGGATCACAAATGAG 61.092 55.000 8.83 0.00 38.57 2.90
1313 1355 0.104120 GTTCAACAGGCCAAACCACC 59.896 55.000 5.01 0.00 43.14 4.61
1314 1356 0.820871 TGTTCAACAGGCCAAACCAC 59.179 50.000 5.01 0.00 43.14 4.16
1315 1357 1.110442 CTGTTCAACAGGCCAAACCA 58.890 50.000 9.96 0.00 42.35 3.67
1316 1358 1.338020 CTCTGTTCAACAGGCCAAACC 59.662 52.381 17.71 0.00 45.94 3.27
1317 1359 1.269257 GCTCTGTTCAACAGGCCAAAC 60.269 52.381 17.71 1.66 45.94 2.93
1340 1382 1.335872 GGTGACTGCAAATTCAACCGG 60.336 52.381 0.00 0.00 0.00 5.28
1360 1402 1.168407 TCCCGTCCTATTCCTACGCG 61.168 60.000 3.53 3.53 35.36 6.01
1484 1526 6.822667 TGTCATACGACCAGAAAAGTACTA 57.177 37.500 0.00 0.00 41.85 1.82
1578 1620 3.906720 TGACAATCTAGCCCAGTTACC 57.093 47.619 0.00 0.00 0.00 2.85
1614 1656 1.178534 AACTGAAACCATGCCCACGG 61.179 55.000 0.00 0.00 0.00 4.94
1690 1732 3.130280 TCCTCTGAAAACCGTTTACCC 57.870 47.619 0.00 0.00 0.00 3.69
1717 1759 1.602377 ACGGCTCAGTTGTTTACAAGC 59.398 47.619 0.00 0.00 36.39 4.01
1815 1857 5.066505 CGCAAGGCTTATCTGGAGTATTTTT 59.933 40.000 0.00 0.00 0.00 1.94
1822 1864 2.315246 GCGCAAGGCTTATCTGGAG 58.685 57.895 0.30 0.00 39.11 3.86
1823 1865 4.540153 GCGCAAGGCTTATCTGGA 57.460 55.556 0.30 0.00 39.11 3.86
1929 2003 4.572389 GTCTGTAGTGCAAATCATAGGGTG 59.428 45.833 0.00 0.00 0.00 4.61
1955 2029 1.667724 CAGCTTTCTGGCAATAGGACG 59.332 52.381 0.00 0.00 36.68 4.79
2044 2118 5.716228 ACATTTTATCTGGAGCACCAATGAA 59.284 36.000 14.70 7.51 46.32 2.57
2105 2179 7.175467 ACAGCAATGACATCTTCTTACAATGAA 59.825 33.333 0.00 0.00 0.00 2.57
2110 2184 6.701340 AGTACAGCAATGACATCTTCTTACA 58.299 36.000 0.00 0.00 0.00 2.41
2151 2225 6.264970 GGGGTGTACTGGAAGACTACTTATAG 59.735 46.154 0.00 0.00 37.43 1.31
2300 2374 5.801531 ATATGATGCGTCCCAAGTTACTA 57.198 39.130 2.83 0.00 0.00 1.82
2308 2382 4.143986 TGTACAAATATGATGCGTCCCA 57.856 40.909 2.83 0.00 0.00 4.37
2313 2387 6.132724 TGCGTTAATGTACAAATATGATGCG 58.867 36.000 0.00 0.00 0.00 4.73
2327 2401 8.937884 TACATACTTGTTACATTGCGTTAATGT 58.062 29.630 19.16 19.16 46.79 2.71
2328 2402 9.762062 TTACATACTTGTTACATTGCGTTAATG 57.238 29.630 11.38 11.38 42.96 1.90
2355 2429 9.071276 CCAGTGCTAAGATCCACATTAAATATT 57.929 33.333 3.19 0.00 34.48 1.28
2356 2430 8.439971 TCCAGTGCTAAGATCCACATTAAATAT 58.560 33.333 3.19 0.00 34.48 1.28
2357 2431 7.801104 TCCAGTGCTAAGATCCACATTAAATA 58.199 34.615 3.19 0.00 34.48 1.40
2358 2432 6.662755 TCCAGTGCTAAGATCCACATTAAAT 58.337 36.000 3.19 0.00 34.48 1.40
2359 2433 6.061022 TCCAGTGCTAAGATCCACATTAAA 57.939 37.500 3.19 0.00 34.48 1.52
2360 2434 5.692115 TCCAGTGCTAAGATCCACATTAA 57.308 39.130 3.19 0.00 34.48 1.40
2361 2435 5.692115 TTCCAGTGCTAAGATCCACATTA 57.308 39.130 3.19 0.00 34.48 1.90
2362 2436 4.574674 TTCCAGTGCTAAGATCCACATT 57.425 40.909 3.19 0.00 34.48 2.71
2363 2437 4.785346 ATTCCAGTGCTAAGATCCACAT 57.215 40.909 3.19 0.00 34.48 3.21
2364 2438 5.692115 TTATTCCAGTGCTAAGATCCACA 57.308 39.130 3.19 0.00 34.48 4.17
2365 2439 7.445945 AGTATTATTCCAGTGCTAAGATCCAC 58.554 38.462 0.00 0.00 0.00 4.02
2366 2440 7.256332 GGAGTATTATTCCAGTGCTAAGATCCA 60.256 40.741 0.56 0.00 34.74 3.41
2367 2441 7.038658 AGGAGTATTATTCCAGTGCTAAGATCC 60.039 40.741 7.85 0.00 37.18 3.36
2368 2442 7.902087 AGGAGTATTATTCCAGTGCTAAGATC 58.098 38.462 7.85 0.00 37.18 2.75
2369 2443 7.863901 AGGAGTATTATTCCAGTGCTAAGAT 57.136 36.000 7.85 0.00 37.18 2.40
2370 2444 7.676683 AAGGAGTATTATTCCAGTGCTAAGA 57.323 36.000 7.85 0.00 37.18 2.10
2371 2445 7.442666 GGAAAGGAGTATTATTCCAGTGCTAAG 59.557 40.741 7.85 0.00 40.81 2.18
2372 2446 7.127339 AGGAAAGGAGTATTATTCCAGTGCTAA 59.873 37.037 7.85 0.00 43.03 3.09
2373 2447 6.615726 AGGAAAGGAGTATTATTCCAGTGCTA 59.384 38.462 7.85 0.00 43.03 3.49
2374 2448 5.430089 AGGAAAGGAGTATTATTCCAGTGCT 59.570 40.000 7.85 3.04 43.03 4.40
2375 2449 5.685728 AGGAAAGGAGTATTATTCCAGTGC 58.314 41.667 7.85 1.01 43.03 4.40
2376 2450 9.277783 CAATAGGAAAGGAGTATTATTCCAGTG 57.722 37.037 7.85 0.00 43.03 3.66
2377 2451 8.440771 CCAATAGGAAAGGAGTATTATTCCAGT 58.559 37.037 7.85 0.00 43.03 4.00
2378 2452 8.440771 ACCAATAGGAAAGGAGTATTATTCCAG 58.559 37.037 7.85 0.00 43.03 3.86
2379 2453 8.217799 CACCAATAGGAAAGGAGTATTATTCCA 58.782 37.037 7.85 0.00 43.03 3.53
2380 2454 8.218488 ACACCAATAGGAAAGGAGTATTATTCC 58.782 37.037 0.00 0.00 41.32 3.01
2381 2455 9.628500 AACACCAATAGGAAAGGAGTATTATTC 57.372 33.333 0.00 0.00 38.69 1.75
2382 2456 9.628500 GAACACCAATAGGAAAGGAGTATTATT 57.372 33.333 0.00 0.00 38.69 1.40
2383 2457 9.004231 AGAACACCAATAGGAAAGGAGTATTAT 57.996 33.333 0.00 0.00 38.69 1.28
2384 2458 8.388656 AGAACACCAATAGGAAAGGAGTATTA 57.611 34.615 0.00 0.00 38.69 0.98
2385 2459 7.272144 AGAACACCAATAGGAAAGGAGTATT 57.728 36.000 0.00 0.00 38.69 1.89
2386 2460 6.893020 AGAACACCAATAGGAAAGGAGTAT 57.107 37.500 0.00 0.00 38.69 2.12
2387 2461 7.989947 ATAGAACACCAATAGGAAAGGAGTA 57.010 36.000 0.00 0.00 38.69 2.59
2388 2462 6.893020 ATAGAACACCAATAGGAAAGGAGT 57.107 37.500 0.00 0.00 38.69 3.85
2389 2463 8.024145 AGTATAGAACACCAATAGGAAAGGAG 57.976 38.462 0.00 0.00 38.69 3.69
2390 2464 7.201884 CGAGTATAGAACACCAATAGGAAAGGA 60.202 40.741 0.00 0.00 38.69 3.36
2391 2465 6.924060 CGAGTATAGAACACCAATAGGAAAGG 59.076 42.308 0.00 0.00 38.69 3.11
2392 2466 7.435488 CACGAGTATAGAACACCAATAGGAAAG 59.565 40.741 0.00 0.00 38.69 2.62
2393 2467 7.093640 ACACGAGTATAGAACACCAATAGGAAA 60.094 37.037 0.00 0.00 38.69 3.13
2394 2468 6.379133 ACACGAGTATAGAACACCAATAGGAA 59.621 38.462 0.00 0.00 38.69 3.36
2395 2469 5.889853 ACACGAGTATAGAACACCAATAGGA 59.110 40.000 0.00 0.00 38.69 2.94
2396 2470 6.145338 ACACGAGTATAGAACACCAATAGG 57.855 41.667 0.00 0.00 42.21 2.57
2397 2471 9.577110 TTTAACACGAGTATAGAACACCAATAG 57.423 33.333 0.00 0.00 0.00 1.73
2400 2474 9.357652 GTATTTAACACGAGTATAGAACACCAA 57.642 33.333 0.00 0.00 0.00 3.67
2401 2475 8.522003 TGTATTTAACACGAGTATAGAACACCA 58.478 33.333 0.00 0.00 31.43 4.17
2402 2476 8.915871 TGTATTTAACACGAGTATAGAACACC 57.084 34.615 0.00 0.00 31.43 4.16
2443 2643 9.086336 CAAAACAAAATTAAACTTCTGCTCAGA 57.914 29.630 0.00 0.00 35.27 3.27
2446 2646 8.116136 CCACAAAACAAAATTAAACTTCTGCTC 58.884 33.333 0.00 0.00 0.00 4.26
2470 2670 3.840666 ACAGTCTTTCCTTCTATCTGCCA 59.159 43.478 0.00 0.00 0.00 4.92
3051 3254 6.933521 CGGGATGAGAAACAAGAATATCTGAT 59.066 38.462 0.00 0.00 0.00 2.90
3297 3505 2.036604 TCTACCAACATCGACAGTGCAA 59.963 45.455 0.00 0.00 0.00 4.08
3418 3627 6.698766 GGGTATGCATTTAGAGCAATTCAAAG 59.301 38.462 3.54 0.00 46.27 2.77
3456 3665 2.572095 TAATGGTCGGAGGCACAGCG 62.572 60.000 0.00 0.00 0.00 5.18
3467 3676 6.037500 ACACATCATGAAATCACTAATGGTCG 59.962 38.462 0.00 0.00 0.00 4.79
3495 3704 1.800805 AGAACACAGGTCGAGCAATG 58.199 50.000 18.15 15.99 0.00 2.82
3559 3768 3.942829 TCTCATCCGCTTCAAGAAACAT 58.057 40.909 0.00 0.00 0.00 2.71
3571 3780 1.656095 CACGAAAGACTTCTCATCCGC 59.344 52.381 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.