Multiple sequence alignment - TraesCS3B01G396100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G396100 chr3B 100.000 6252 0 0 1 6252 624322196 624315945 0.000000e+00 11546
1 TraesCS3B01G396100 chr3B 94.811 212 9 2 316 527 614193900 614194109 4.670000e-86 329
2 TraesCS3B01G396100 chr3B 93.953 215 13 0 313 527 442079988 442080202 6.040000e-85 326
3 TraesCS3B01G396100 chr3D 92.390 3732 144 59 526 4182 470491307 470487641 0.000000e+00 5190
4 TraesCS3B01G396100 chr3D 92.828 1450 51 17 4091 5518 470487636 470486218 0.000000e+00 2052
5 TraesCS3B01G396100 chr3D 89.807 569 26 14 5706 6251 470485905 470485346 0.000000e+00 701
6 TraesCS3B01G396100 chr3D 92.715 151 8 1 5510 5657 470486037 470485887 1.370000e-51 215
7 TraesCS3B01G396100 chr3D 90.071 141 7 4 144 281 470491479 470491343 6.440000e-40 176
8 TraesCS3B01G396100 chr3A 92.817 3230 119 38 526 3708 612528433 612525270 0.000000e+00 4575
9 TraesCS3B01G396100 chr3A 92.042 2639 123 41 3607 6179 612525269 612522652 0.000000e+00 3629
10 TraesCS3B01G396100 chr7D 91.593 452 20 6 4374 4811 477931920 477932367 5.360000e-170 608
11 TraesCS3B01G396100 chr5A 91.499 447 30 3 4372 4815 582919268 582918827 5.360000e-170 608
12 TraesCS3B01G396100 chr5A 87.919 447 35 5 4372 4815 616764696 616764266 5.590000e-140 508
13 TraesCS3B01G396100 chr5A 94.419 215 11 1 312 526 24176072 24175859 4.670000e-86 329
14 TraesCS3B01G396100 chr6B 91.275 447 31 3 4372 4815 275292533 275292092 2.490000e-168 603
15 TraesCS3B01G396100 chr2A 90.889 450 30 4 4372 4815 138532997 138533441 1.500000e-165 593
16 TraesCS3B01G396100 chr2A 93.694 222 14 0 306 527 423177111 423177332 3.610000e-87 333
17 TraesCS3B01G396100 chr2A 94.811 212 10 1 316 527 226553719 226553929 4.670000e-86 329
18 TraesCS3B01G396100 chr4A 90.667 450 30 5 4372 4815 90325603 90325160 6.980000e-164 588
19 TraesCS3B01G396100 chr4A 90.909 440 33 3 4372 4808 95390706 95391141 9.030000e-163 584
20 TraesCS3B01G396100 chr5B 96.226 212 8 0 316 527 440262952 440262741 1.290000e-91 348
21 TraesCS3B01G396100 chr1A 96.226 212 8 0 316 527 530169971 530170182 1.290000e-91 348
22 TraesCS3B01G396100 chr1A 74.946 467 61 40 1252 1709 479541255 479541674 5.010000e-36 163
23 TraesCS3B01G396100 chr4B 95.755 212 8 1 316 527 373995922 373995712 2.160000e-89 340
24 TraesCS3B01G396100 chr7A 94.419 215 11 1 313 527 8596979 8597192 4.670000e-86 329
25 TraesCS3B01G396100 chr1D 75.000 468 59 39 1252 1709 378699501 378699920 5.010000e-36 163
26 TraesCS3B01G396100 chr1B 74.946 467 61 40 1252 1709 507306454 507306873 5.010000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G396100 chr3B 624315945 624322196 6251 True 11546.0 11546 100.0000 1 6252 1 chr3B.!!$R1 6251
1 TraesCS3B01G396100 chr3D 470485346 470491479 6133 True 1666.8 5190 91.5622 144 6251 5 chr3D.!!$R1 6107
2 TraesCS3B01G396100 chr3A 612522652 612528433 5781 True 4102.0 4575 92.4295 526 6179 2 chr3A.!!$R1 5653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 392 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57 F
493 497 0.107017 CATTCATCAGGGCGGGTCTT 60.107 55.000 0.00 0.00 0.00 3.01 F
738 756 0.529773 GAGCGAGCGAGAGAGAGAGA 60.530 60.000 0.00 0.00 0.00 3.10 F
740 758 0.529773 GCGAGCGAGAGAGAGAGAGA 60.530 60.000 0.00 0.00 0.00 3.10 F
1829 1877 0.531311 ACTTTTTCCGCCTCGTTCGT 60.531 50.000 0.00 0.00 0.00 3.85 F
2227 2281 1.009829 GATGCTGGAAACTGGTAGCG 58.990 55.000 0.00 0.00 38.96 4.26 F
2655 2734 1.302192 GTGCAAGAGGTACCGGCAA 60.302 57.895 20.04 6.92 36.08 4.52 F
4015 4232 1.561076 TGACAGGCATCCTAGCACAAT 59.439 47.619 0.00 0.00 35.83 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1775 0.322975 TCTTCTTCCACTGCTGCTCC 59.677 55.0 0.00 0.0 0.00 4.70 R
2221 2275 0.521735 CAGGCCAAAGTTTCGCTACC 59.478 55.0 5.01 0.0 0.00 3.18 R
2629 2699 0.892755 TACCTCTTGCACACCTACGG 59.107 55.0 0.00 0.0 0.00 4.02 R
2805 2884 1.372087 CCTTGACGGGCATCTTGCTC 61.372 60.0 0.00 0.0 44.28 4.26 R
3428 3530 0.255033 GGACGCCCTAACCAAATCCT 59.745 55.0 0.00 0.0 0.00 3.24 R
4212 4525 0.394565 ATAAGTCCGAGCAGCATCCC 59.605 55.0 0.00 0.0 0.00 3.85 R
4411 4750 2.097680 TCAGACGAATGCAGCATGAA 57.902 45.0 9.18 0.0 39.69 2.57 R
5534 6110 0.548510 GGCAGGAGACCATAAAGCCT 59.451 55.0 0.00 0.0 37.67 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.995220 TGATTAGTATACAATTAAATCGGTGGC 58.005 33.333 5.50 0.00 0.00 5.01
30 31 5.917541 AGTATACAATTAAATCGGTGGCG 57.082 39.130 5.50 0.00 0.00 5.69
31 32 5.362263 AGTATACAATTAAATCGGTGGCGT 58.638 37.500 5.50 0.00 0.00 5.68
32 33 4.806342 ATACAATTAAATCGGTGGCGTC 57.194 40.909 0.00 0.00 0.00 5.19
33 34 2.428491 ACAATTAAATCGGTGGCGTCA 58.572 42.857 0.00 0.00 0.00 4.35
34 35 2.160813 ACAATTAAATCGGTGGCGTCAC 59.839 45.455 12.83 12.83 42.91 3.67
35 36 2.102070 ATTAAATCGGTGGCGTCACA 57.898 45.000 23.45 1.81 45.32 3.58
36 37 1.880271 TTAAATCGGTGGCGTCACAA 58.120 45.000 23.45 9.87 45.32 3.33
37 38 2.102070 TAAATCGGTGGCGTCACAAT 57.898 45.000 23.45 11.93 45.32 2.71
38 39 0.521291 AAATCGGTGGCGTCACAATG 59.479 50.000 23.45 11.16 45.32 2.82
39 40 1.922135 AATCGGTGGCGTCACAATGC 61.922 55.000 23.45 3.00 45.32 3.56
40 41 2.803155 ATCGGTGGCGTCACAATGCT 62.803 55.000 23.45 0.00 45.32 3.79
41 42 2.870372 GGTGGCGTCACAATGCTC 59.130 61.111 23.45 0.00 45.32 4.26
42 43 1.672356 GGTGGCGTCACAATGCTCT 60.672 57.895 23.45 0.00 45.32 4.09
43 44 1.237285 GGTGGCGTCACAATGCTCTT 61.237 55.000 23.45 0.00 45.32 2.85
44 45 0.110056 GTGGCGTCACAATGCTCTTG 60.110 55.000 16.80 0.00 43.13 3.02
45 46 0.250252 TGGCGTCACAATGCTCTTGA 60.250 50.000 6.59 0.00 37.57 3.02
46 47 0.166814 GGCGTCACAATGCTCTTGAC 59.833 55.000 6.59 3.15 37.57 3.18
47 48 0.166814 GCGTCACAATGCTCTTGACC 59.833 55.000 6.59 0.00 37.01 4.02
48 49 0.439985 CGTCACAATGCTCTTGACCG 59.560 55.000 6.59 2.70 37.01 4.79
49 50 1.512926 GTCACAATGCTCTTGACCGT 58.487 50.000 6.59 0.00 34.72 4.83
50 51 1.195448 GTCACAATGCTCTTGACCGTG 59.805 52.381 6.59 0.00 34.72 4.94
51 52 1.202639 TCACAATGCTCTTGACCGTGT 60.203 47.619 6.59 0.00 0.00 4.49
52 53 1.069703 CACAATGCTCTTGACCGTGTG 60.070 52.381 6.59 0.00 0.00 3.82
53 54 0.110056 CAATGCTCTTGACCGTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
54 55 0.250467 AATGCTCTTGACCGTGTGCT 60.250 50.000 0.00 0.00 0.00 4.40
55 56 0.952497 ATGCTCTTGACCGTGTGCTG 60.952 55.000 0.00 0.00 0.00 4.41
56 57 2.320587 GCTCTTGACCGTGTGCTGG 61.321 63.158 0.00 0.00 0.00 4.85
57 58 1.669115 CTCTTGACCGTGTGCTGGG 60.669 63.158 0.00 0.00 0.00 4.45
58 59 3.357079 CTTGACCGTGTGCTGGGC 61.357 66.667 0.00 0.00 33.95 5.36
59 60 3.832237 CTTGACCGTGTGCTGGGCT 62.832 63.158 0.00 0.00 34.69 5.19
60 61 4.624364 TGACCGTGTGCTGGGCTG 62.624 66.667 0.00 0.00 34.69 4.85
61 62 4.314440 GACCGTGTGCTGGGCTGA 62.314 66.667 0.00 0.00 0.00 4.26
62 63 3.825160 GACCGTGTGCTGGGCTGAA 62.825 63.158 0.00 0.00 0.00 3.02
63 64 3.052082 CCGTGTGCTGGGCTGAAG 61.052 66.667 0.00 0.00 0.00 3.02
64 65 2.031012 CGTGTGCTGGGCTGAAGA 59.969 61.111 0.00 0.00 0.00 2.87
65 66 1.597854 CGTGTGCTGGGCTGAAGAA 60.598 57.895 0.00 0.00 0.00 2.52
66 67 1.165907 CGTGTGCTGGGCTGAAGAAA 61.166 55.000 0.00 0.00 0.00 2.52
67 68 1.251251 GTGTGCTGGGCTGAAGAAAT 58.749 50.000 0.00 0.00 0.00 2.17
68 69 2.436417 GTGTGCTGGGCTGAAGAAATA 58.564 47.619 0.00 0.00 0.00 1.40
69 70 2.819608 GTGTGCTGGGCTGAAGAAATAA 59.180 45.455 0.00 0.00 0.00 1.40
70 71 3.255642 GTGTGCTGGGCTGAAGAAATAAA 59.744 43.478 0.00 0.00 0.00 1.40
71 72 3.894427 TGTGCTGGGCTGAAGAAATAAAA 59.106 39.130 0.00 0.00 0.00 1.52
72 73 4.527816 TGTGCTGGGCTGAAGAAATAAAAT 59.472 37.500 0.00 0.00 0.00 1.82
73 74 5.714333 TGTGCTGGGCTGAAGAAATAAAATA 59.286 36.000 0.00 0.00 0.00 1.40
74 75 6.380846 TGTGCTGGGCTGAAGAAATAAAATAT 59.619 34.615 0.00 0.00 0.00 1.28
75 76 6.920210 GTGCTGGGCTGAAGAAATAAAATATC 59.080 38.462 0.00 0.00 0.00 1.63
76 77 6.835488 TGCTGGGCTGAAGAAATAAAATATCT 59.165 34.615 0.00 0.00 0.00 1.98
77 78 7.013655 TGCTGGGCTGAAGAAATAAAATATCTC 59.986 37.037 0.00 0.00 0.00 2.75
78 79 7.013655 GCTGGGCTGAAGAAATAAAATATCTCA 59.986 37.037 0.00 0.00 0.00 3.27
79 80 8.455903 TGGGCTGAAGAAATAAAATATCTCAG 57.544 34.615 0.00 0.00 0.00 3.35
80 81 8.055181 TGGGCTGAAGAAATAAAATATCTCAGT 58.945 33.333 0.00 0.00 0.00 3.41
81 82 8.563732 GGGCTGAAGAAATAAAATATCTCAGTC 58.436 37.037 0.00 0.00 0.00 3.51
82 83 9.113838 GGCTGAAGAAATAAAATATCTCAGTCA 57.886 33.333 0.00 0.00 30.42 3.41
122 123 4.884668 TGGTAAAACCAGACTCGAATCT 57.115 40.909 0.00 0.00 44.79 2.40
123 124 4.566004 TGGTAAAACCAGACTCGAATCTG 58.434 43.478 16.76 16.76 44.79 2.90
127 128 4.844420 CAGACTCGAATCTGGGGC 57.156 61.111 15.96 0.00 42.13 5.80
128 129 1.900351 CAGACTCGAATCTGGGGCA 59.100 57.895 15.96 0.00 42.13 5.36
129 130 0.460987 CAGACTCGAATCTGGGGCAC 60.461 60.000 15.96 0.00 42.13 5.01
130 131 1.519455 GACTCGAATCTGGGGCACG 60.519 63.158 0.00 0.00 0.00 5.34
131 132 2.202932 CTCGAATCTGGGGCACGG 60.203 66.667 0.00 0.00 0.00 4.94
132 133 3.000819 TCGAATCTGGGGCACGGT 61.001 61.111 0.00 0.00 0.00 4.83
133 134 2.819595 CGAATCTGGGGCACGGTG 60.820 66.667 3.15 3.15 0.00 4.94
134 135 2.438434 GAATCTGGGGCACGGTGG 60.438 66.667 10.60 0.00 0.00 4.61
135 136 3.256960 AATCTGGGGCACGGTGGT 61.257 61.111 10.60 0.00 0.00 4.16
138 139 3.632080 CTGGGGCACGGTGGTGTA 61.632 66.667 10.60 0.00 46.13 2.90
139 140 3.169242 TGGGGCACGGTGGTGTAA 61.169 61.111 10.60 0.00 46.13 2.41
140 141 2.113562 GGGGCACGGTGGTGTAAA 59.886 61.111 10.60 0.00 46.13 2.01
141 142 1.528776 GGGGCACGGTGGTGTAAAA 60.529 57.895 10.60 0.00 46.13 1.52
142 143 0.896479 GGGGCACGGTGGTGTAAAAT 60.896 55.000 10.60 0.00 46.13 1.82
174 175 6.391227 GCAAATGCATAGTTACCATTACCT 57.609 37.500 0.00 0.00 41.59 3.08
175 176 6.208644 GCAAATGCATAGTTACCATTACCTG 58.791 40.000 0.00 0.00 41.59 4.00
189 190 5.518848 CATTACCTGGAGCAAATGCATAA 57.481 39.130 8.28 0.00 45.16 1.90
190 191 6.092955 CATTACCTGGAGCAAATGCATAAT 57.907 37.500 8.28 0.00 45.16 1.28
191 192 6.518493 CATTACCTGGAGCAAATGCATAATT 58.482 36.000 8.28 0.00 45.16 1.40
193 194 7.652524 TTACCTGGAGCAAATGCATAATTAA 57.347 32.000 8.28 0.00 45.16 1.40
194 195 6.152932 ACCTGGAGCAAATGCATAATTAAG 57.847 37.500 8.28 0.00 45.16 1.85
195 196 4.986659 CCTGGAGCAAATGCATAATTAAGC 59.013 41.667 8.28 5.74 45.16 3.09
196 197 4.947645 TGGAGCAAATGCATAATTAAGCC 58.052 39.130 10.00 0.00 45.16 4.35
281 285 0.462759 AGCAGGCCTATTTCACTCGC 60.463 55.000 3.98 0.19 0.00 5.03
282 286 1.766143 GCAGGCCTATTTCACTCGCG 61.766 60.000 3.98 0.00 0.00 5.87
283 287 1.521681 AGGCCTATTTCACTCGCGC 60.522 57.895 1.29 0.00 0.00 6.86
284 288 2.621000 GCCTATTTCACTCGCGCG 59.379 61.111 26.76 26.76 0.00 6.86
287 291 1.480219 CCTATTTCACTCGCGCGTCC 61.480 60.000 30.98 0.00 0.00 4.79
289 293 0.524816 TATTTCACTCGCGCGTCCTC 60.525 55.000 30.98 0.00 0.00 3.71
304 308 4.821589 CTCCGCCCGTTGCCTCTC 62.822 72.222 0.00 0.00 36.24 3.20
310 314 2.202676 CCGTTGCCTCTCTCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
311 315 2.578178 CGTTGCCTCTCTCGCTCG 60.578 66.667 0.00 0.00 0.00 5.03
312 316 2.883253 GTTGCCTCTCTCGCTCGC 60.883 66.667 0.00 0.00 0.00 5.03
313 317 4.482684 TTGCCTCTCTCGCTCGCG 62.483 66.667 0.00 0.00 41.35 5.87
347 351 3.383162 AGACCAGGTCTCACGGATT 57.617 52.632 17.31 0.00 38.71 3.01
348 352 2.526888 AGACCAGGTCTCACGGATTA 57.473 50.000 17.31 0.00 38.71 1.75
349 353 2.379972 AGACCAGGTCTCACGGATTAG 58.620 52.381 17.31 0.00 38.71 1.73
350 354 0.824759 ACCAGGTCTCACGGATTAGC 59.175 55.000 0.00 0.00 0.00 3.09
351 355 0.824109 CCAGGTCTCACGGATTAGCA 59.176 55.000 0.00 0.00 0.00 3.49
352 356 1.202463 CCAGGTCTCACGGATTAGCAG 60.202 57.143 0.00 0.00 0.00 4.24
353 357 1.115467 AGGTCTCACGGATTAGCAGG 58.885 55.000 0.00 0.00 0.00 4.85
354 358 0.824759 GGTCTCACGGATTAGCAGGT 59.175 55.000 0.00 0.00 0.00 4.00
355 359 1.471676 GGTCTCACGGATTAGCAGGTG 60.472 57.143 0.00 0.00 0.00 4.00
356 360 1.476891 GTCTCACGGATTAGCAGGTGA 59.523 52.381 0.00 0.00 37.77 4.02
358 362 1.847328 TCACGGATTAGCAGGTGAGA 58.153 50.000 0.00 0.00 34.71 3.27
359 363 1.476891 TCACGGATTAGCAGGTGAGAC 59.523 52.381 0.00 0.00 34.71 3.36
360 364 0.824759 ACGGATTAGCAGGTGAGACC 59.175 55.000 0.00 0.00 38.99 3.85
361 365 0.105039 CGGATTAGCAGGTGAGACCC 59.895 60.000 0.00 0.00 39.75 4.46
362 366 1.204146 GGATTAGCAGGTGAGACCCA 58.796 55.000 0.00 0.00 39.75 4.51
363 367 1.771255 GGATTAGCAGGTGAGACCCAT 59.229 52.381 0.00 0.00 39.75 4.00
364 368 2.173569 GGATTAGCAGGTGAGACCCATT 59.826 50.000 0.00 0.00 39.75 3.16
365 369 3.471680 GATTAGCAGGTGAGACCCATTC 58.528 50.000 0.00 0.00 39.75 2.67
366 370 2.254152 TAGCAGGTGAGACCCATTCT 57.746 50.000 0.00 0.00 39.75 2.40
367 371 0.617413 AGCAGGTGAGACCCATTCTG 59.383 55.000 0.00 0.00 39.75 3.02
368 372 0.615331 GCAGGTGAGACCCATTCTGA 59.385 55.000 0.00 0.00 39.75 3.27
369 373 1.211457 GCAGGTGAGACCCATTCTGAT 59.789 52.381 0.00 0.00 39.75 2.90
370 374 2.915349 CAGGTGAGACCCATTCTGATG 58.085 52.381 0.00 0.00 39.75 3.07
381 385 3.938778 CATTCTGATGGATGACACGTG 57.061 47.619 15.48 15.48 0.00 4.49
382 386 2.385013 TTCTGATGGATGACACGTGG 57.615 50.000 21.57 1.66 0.00 4.94
383 387 0.108186 TCTGATGGATGACACGTGGC 60.108 55.000 21.57 19.24 0.00 5.01
384 388 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
386 390 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
387 391 1.331756 GATGGATGACACGTGGCATTC 59.668 52.381 36.07 34.16 45.42 2.67
388 392 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
389 393 0.447801 GGATGACACGTGGCATTCAC 59.552 55.000 36.07 24.74 45.42 3.18
390 394 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
391 395 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
392 396 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
393 397 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
394 398 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
395 399 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
396 400 2.287547 ACACGTGGCATTCACAAATCAC 60.288 45.455 21.57 0.00 46.36 3.06
397 401 1.952990 ACGTGGCATTCACAAATCACA 59.047 42.857 0.00 0.00 46.36 3.58
398 402 2.360483 ACGTGGCATTCACAAATCACAA 59.640 40.909 0.00 0.00 46.36 3.33
399 403 3.181482 ACGTGGCATTCACAAATCACAAA 60.181 39.130 0.00 0.00 46.36 2.83
400 404 3.182173 CGTGGCATTCACAAATCACAAAC 59.818 43.478 0.00 0.00 46.36 2.93
401 405 3.494251 GTGGCATTCACAAATCACAAACC 59.506 43.478 0.00 0.00 45.39 3.27
402 406 3.133542 TGGCATTCACAAATCACAAACCA 59.866 39.130 0.00 0.00 0.00 3.67
403 407 4.202336 TGGCATTCACAAATCACAAACCAT 60.202 37.500 0.00 0.00 0.00 3.55
404 408 4.389687 GGCATTCACAAATCACAAACCATC 59.610 41.667 0.00 0.00 0.00 3.51
405 409 4.389687 GCATTCACAAATCACAAACCATCC 59.610 41.667 0.00 0.00 0.00 3.51
406 410 5.539979 CATTCACAAATCACAAACCATCCA 58.460 37.500 0.00 0.00 0.00 3.41
407 411 4.582701 TCACAAATCACAAACCATCCAC 57.417 40.909 0.00 0.00 0.00 4.02
408 412 3.320541 TCACAAATCACAAACCATCCACC 59.679 43.478 0.00 0.00 0.00 4.61
409 413 2.632512 ACAAATCACAAACCATCCACCC 59.367 45.455 0.00 0.00 0.00 4.61
410 414 1.937191 AATCACAAACCATCCACCCC 58.063 50.000 0.00 0.00 0.00 4.95
411 415 0.783206 ATCACAAACCATCCACCCCA 59.217 50.000 0.00 0.00 0.00 4.96
412 416 0.178975 TCACAAACCATCCACCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
413 417 1.155155 ACAAACCATCCACCCCACC 59.845 57.895 0.00 0.00 0.00 4.61
414 418 1.609210 CAAACCATCCACCCCACCC 60.609 63.158 0.00 0.00 0.00 4.61
415 419 1.782608 AAACCATCCACCCCACCCT 60.783 57.895 0.00 0.00 0.00 4.34
416 420 1.800229 AAACCATCCACCCCACCCTC 61.800 60.000 0.00 0.00 0.00 4.30
417 421 3.420482 CCATCCACCCCACCCTCC 61.420 72.222 0.00 0.00 0.00 4.30
418 422 2.613696 CATCCACCCCACCCTCCA 60.614 66.667 0.00 0.00 0.00 3.86
419 423 2.008723 CATCCACCCCACCCTCCAT 61.009 63.158 0.00 0.00 0.00 3.41
420 424 1.697754 ATCCACCCCACCCTCCATC 60.698 63.158 0.00 0.00 0.00 3.51
421 425 2.214057 ATCCACCCCACCCTCCATCT 62.214 60.000 0.00 0.00 0.00 2.90
422 426 2.683465 CCACCCCACCCTCCATCTG 61.683 68.421 0.00 0.00 0.00 2.90
423 427 1.616327 CACCCCACCCTCCATCTGA 60.616 63.158 0.00 0.00 0.00 3.27
424 428 1.163309 ACCCCACCCTCCATCTGAA 59.837 57.895 0.00 0.00 0.00 3.02
425 429 0.477597 ACCCCACCCTCCATCTGAAA 60.478 55.000 0.00 0.00 0.00 2.69
426 430 0.929244 CCCCACCCTCCATCTGAAAT 59.071 55.000 0.00 0.00 0.00 2.17
427 431 1.133668 CCCCACCCTCCATCTGAAATC 60.134 57.143 0.00 0.00 0.00 2.17
428 432 1.565759 CCCACCCTCCATCTGAAATCA 59.434 52.381 0.00 0.00 0.00 2.57
429 433 2.422519 CCCACCCTCCATCTGAAATCAG 60.423 54.545 3.99 3.99 45.08 2.90
430 434 2.422519 CCACCCTCCATCTGAAATCAGG 60.423 54.545 10.37 0.00 43.91 3.86
431 435 1.849039 ACCCTCCATCTGAAATCAGGG 59.151 52.381 10.37 11.03 43.91 4.45
432 436 1.144503 CCCTCCATCTGAAATCAGGGG 59.855 57.143 10.37 11.81 43.91 4.79
433 437 1.144503 CCTCCATCTGAAATCAGGGGG 59.855 57.143 16.67 14.57 43.91 5.40
452 456 3.749226 GGGGGAGAGATTAGATGCTTTG 58.251 50.000 0.00 0.00 0.00 2.77
453 457 3.137360 GGGGGAGAGATTAGATGCTTTGT 59.863 47.826 0.00 0.00 0.00 2.83
454 458 4.133078 GGGGAGAGATTAGATGCTTTGTG 58.867 47.826 0.00 0.00 0.00 3.33
455 459 4.141620 GGGGAGAGATTAGATGCTTTGTGA 60.142 45.833 0.00 0.00 0.00 3.58
456 460 5.455899 GGGGAGAGATTAGATGCTTTGTGAT 60.456 44.000 0.00 0.00 0.00 3.06
457 461 6.060788 GGGAGAGATTAGATGCTTTGTGATT 58.939 40.000 0.00 0.00 0.00 2.57
458 462 6.545298 GGGAGAGATTAGATGCTTTGTGATTT 59.455 38.462 0.00 0.00 0.00 2.17
459 463 7.416022 GGAGAGATTAGATGCTTTGTGATTTG 58.584 38.462 0.00 0.00 0.00 2.32
460 464 7.066766 GGAGAGATTAGATGCTTTGTGATTTGT 59.933 37.037 0.00 0.00 0.00 2.83
461 465 7.759465 AGAGATTAGATGCTTTGTGATTTGTG 58.241 34.615 0.00 0.00 0.00 3.33
462 466 7.609146 AGAGATTAGATGCTTTGTGATTTGTGA 59.391 33.333 0.00 0.00 0.00 3.58
463 467 8.114331 AGATTAGATGCTTTGTGATTTGTGAA 57.886 30.769 0.00 0.00 0.00 3.18
464 468 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
465 469 8.697846 ATTAGATGCTTTGTGATTTGTGAATG 57.302 30.769 0.00 0.00 0.00 2.67
466 470 6.092955 AGATGCTTTGTGATTTGTGAATGT 57.907 33.333 0.00 0.00 0.00 2.71
467 471 6.154445 AGATGCTTTGTGATTTGTGAATGTC 58.846 36.000 0.00 0.00 0.00 3.06
468 472 5.259832 TGCTTTGTGATTTGTGAATGTCA 57.740 34.783 0.00 0.00 0.00 3.58
484 488 5.817988 GAATGTCACATGTCATTCATCAGG 58.182 41.667 24.71 1.76 44.32 3.86
485 489 3.613030 TGTCACATGTCATTCATCAGGG 58.387 45.455 0.00 0.00 34.09 4.45
486 490 2.357009 GTCACATGTCATTCATCAGGGC 59.643 50.000 0.00 0.00 34.09 5.19
487 491 1.332686 CACATGTCATTCATCAGGGCG 59.667 52.381 0.00 0.00 34.09 6.13
488 492 0.949397 CATGTCATTCATCAGGGCGG 59.051 55.000 0.00 0.00 34.09 6.13
489 493 0.179009 ATGTCATTCATCAGGGCGGG 60.179 55.000 0.00 0.00 29.76 6.13
490 494 1.224592 GTCATTCATCAGGGCGGGT 59.775 57.895 0.00 0.00 0.00 5.28
491 495 0.815615 GTCATTCATCAGGGCGGGTC 60.816 60.000 0.00 0.00 0.00 4.46
492 496 0.982852 TCATTCATCAGGGCGGGTCT 60.983 55.000 0.00 0.00 0.00 3.85
493 497 0.107017 CATTCATCAGGGCGGGTCTT 60.107 55.000 0.00 0.00 0.00 3.01
494 498 1.140852 CATTCATCAGGGCGGGTCTTA 59.859 52.381 0.00 0.00 0.00 2.10
495 499 0.539986 TTCATCAGGGCGGGTCTTAC 59.460 55.000 0.00 0.00 0.00 2.34
496 500 1.146263 CATCAGGGCGGGTCTTACC 59.854 63.158 0.00 0.00 37.60 2.85
497 501 1.003051 ATCAGGGCGGGTCTTACCT 59.997 57.895 0.00 0.00 38.64 3.08
512 516 7.387643 GGGTCTTACCTGATTTATATGAGACC 58.612 42.308 9.59 9.59 46.13 3.85
513 517 7.235812 GGGTCTTACCTGATTTATATGAGACCT 59.764 40.741 15.74 0.00 46.11 3.85
514 518 8.091449 GGTCTTACCTGATTTATATGAGACCTG 58.909 40.741 10.56 0.00 44.43 4.00
515 519 8.091449 GTCTTACCTGATTTATATGAGACCTGG 58.909 40.741 0.00 0.00 0.00 4.45
516 520 7.789831 TCTTACCTGATTTATATGAGACCTGGT 59.210 37.037 0.00 0.00 0.00 4.00
517 521 6.426646 ACCTGATTTATATGAGACCTGGTC 57.573 41.667 19.20 19.20 0.00 4.02
518 522 6.146760 ACCTGATTTATATGAGACCTGGTCT 58.853 40.000 28.70 28.70 46.42 3.85
533 537 4.001652 CCTGGTCTCGTATAATCTCGCTA 58.998 47.826 0.00 0.00 0.00 4.26
558 562 2.456989 TCGCTTTCTCGGCTTATTACG 58.543 47.619 0.00 0.00 0.00 3.18
665 683 1.453745 CCACACCAACACCAGCAGT 60.454 57.895 0.00 0.00 0.00 4.40
710 728 3.339141 AGGAATCGAGGACAAGAAAAGC 58.661 45.455 0.00 0.00 0.00 3.51
731 749 4.936248 CGAGCGAGCGAGCGAGAG 62.936 72.222 1.41 0.00 43.00 3.20
732 750 3.568743 GAGCGAGCGAGCGAGAGA 61.569 66.667 1.41 0.00 43.00 3.10
733 751 3.506312 GAGCGAGCGAGCGAGAGAG 62.506 68.421 1.41 0.00 43.00 3.20
734 752 3.568743 GCGAGCGAGCGAGAGAGA 61.569 66.667 1.41 0.00 0.00 3.10
735 753 2.625906 CGAGCGAGCGAGAGAGAG 59.374 66.667 0.00 0.00 0.00 3.20
736 754 1.880796 CGAGCGAGCGAGAGAGAGA 60.881 63.158 0.00 0.00 0.00 3.10
737 755 1.821241 CGAGCGAGCGAGAGAGAGAG 61.821 65.000 0.00 0.00 0.00 3.20
738 756 0.529773 GAGCGAGCGAGAGAGAGAGA 60.530 60.000 0.00 0.00 0.00 3.10
739 757 0.530650 AGCGAGCGAGAGAGAGAGAG 60.531 60.000 0.00 0.00 0.00 3.20
740 758 0.529773 GCGAGCGAGAGAGAGAGAGA 60.530 60.000 0.00 0.00 0.00 3.10
885 913 2.365586 CCACTCTCTCCAGGGCCAG 61.366 68.421 6.18 0.00 0.00 4.85
886 914 2.686835 ACTCTCTCCAGGGCCAGC 60.687 66.667 6.18 0.00 0.00 4.85
887 915 2.686470 CTCTCTCCAGGGCCAGCA 60.686 66.667 6.18 0.00 0.00 4.41
888 916 2.203983 TCTCTCCAGGGCCAGCAA 60.204 61.111 6.18 0.00 0.00 3.91
889 917 2.254737 CTCTCTCCAGGGCCAGCAAG 62.255 65.000 6.18 0.00 0.00 4.01
890 918 3.333219 TCTCCAGGGCCAGCAAGG 61.333 66.667 6.18 0.00 41.84 3.61
956 987 3.124686 CTCCTGCTCTACCTCGCC 58.875 66.667 0.00 0.00 0.00 5.54
1098 1136 2.574929 CATGCACACCACATGGCC 59.425 61.111 0.00 0.00 40.99 5.36
1099 1137 3.063704 ATGCACACCACATGGCCG 61.064 61.111 0.00 0.00 39.32 6.13
1221 1259 4.475444 CCGCCCCTGACCCCTCTA 62.475 72.222 0.00 0.00 0.00 2.43
1227 1265 1.764054 CCTGACCCCTCTAGCCCAG 60.764 68.421 0.00 0.00 0.00 4.45
1407 1451 3.036429 GCAGTTCCCGCAGATCCCT 62.036 63.158 0.00 0.00 0.00 4.20
1795 1843 3.744719 TGAGCTACGACGCCGCTT 61.745 61.111 11.99 0.00 39.95 4.68
1829 1877 0.531311 ACTTTTTCCGCCTCGTTCGT 60.531 50.000 0.00 0.00 0.00 3.85
1835 1883 1.804326 CCGCCTCGTTCGTTTCGAT 60.804 57.895 0.00 0.00 35.23 3.59
1837 1885 1.342082 CGCCTCGTTCGTTTCGATGT 61.342 55.000 0.00 0.00 35.23 3.06
2003 2051 3.306917 TCATTTCCATTGCTGCTGTTG 57.693 42.857 0.00 0.00 0.00 3.33
2152 2206 6.377996 AGCACACCTTTTGCAAATATCATCTA 59.622 34.615 13.65 0.00 42.83 1.98
2153 2207 7.035004 GCACACCTTTTGCAAATATCATCTAA 58.965 34.615 13.65 0.00 39.93 2.10
2175 2229 5.902613 ATACATGGAACCACAACTGATTG 57.097 39.130 0.00 0.00 41.98 2.67
2221 2275 2.359900 GGTAGGTGATGCTGGAAACTG 58.640 52.381 0.00 0.00 0.00 3.16
2227 2281 1.009829 GATGCTGGAAACTGGTAGCG 58.990 55.000 0.00 0.00 38.96 4.26
2255 2309 3.499338 TGGCCTGTCATGTCAAGAAAAT 58.501 40.909 3.32 0.00 0.00 1.82
2271 2325 7.432252 GTCAAGAAAATCGTGTTGTTTCATCTT 59.568 33.333 0.00 0.00 34.40 2.40
2294 2348 7.622081 TCTTTCACATGGTTAGGATAGGAGTAA 59.378 37.037 0.00 0.00 0.00 2.24
2591 2657 4.150274 CAGCTGCTTATCTCTAATCAAGCG 59.850 45.833 0.00 0.00 44.99 4.68
2629 2699 6.875076 TCCAGCTACAATTAACCTCTCTTAC 58.125 40.000 0.00 0.00 0.00 2.34
2655 2734 1.302192 GTGCAAGAGGTACCGGCAA 60.302 57.895 20.04 6.92 36.08 4.52
2787 2866 2.292569 GTGCATCAAGGGCATGATACTG 59.707 50.000 0.00 0.00 44.11 2.74
2991 3073 4.035102 GTCCTCCGGGCTTGGCTT 62.035 66.667 0.00 0.00 0.00 4.35
3100 3182 5.359576 TGCGCCTTTCCAAGATAATAATGTT 59.640 36.000 4.18 0.00 0.00 2.71
3103 3185 7.479980 CGCCTTTCCAAGATAATAATGTTTCA 58.520 34.615 0.00 0.00 0.00 2.69
3152 3234 4.106925 GCTGGGCCTGGACCTCTG 62.107 72.222 21.75 11.13 0.00 3.35
3170 3252 5.013183 ACCTCTGGTTGTTTTAGCTGATAGT 59.987 40.000 0.00 0.00 27.29 2.12
3294 3382 7.210718 TCATTCTATTGGATTGCAGCTAATG 57.789 36.000 9.49 0.00 0.00 1.90
3303 3391 6.536447 TGGATTGCAGCTAATGAGATTATCA 58.464 36.000 0.00 0.00 43.70 2.15
3326 3414 5.758296 CAGTCACAGCTTTTAGGACTTTGTA 59.242 40.000 0.00 0.00 36.74 2.41
3428 3530 3.620427 TCATTAGGTGAGCGGCTTTAA 57.380 42.857 2.97 2.07 31.80 1.52
3476 3580 7.749539 ACTTGTATGTTGCTTGTTTTGTTAC 57.250 32.000 0.00 0.00 0.00 2.50
3477 3581 6.470877 ACTTGTATGTTGCTTGTTTTGTTACG 59.529 34.615 0.00 0.00 0.00 3.18
3506 3612 3.302740 GCGAAACAACTTGTGAGTGAGAG 60.303 47.826 0.00 0.00 35.91 3.20
3596 3703 7.333528 TGTTTTGCCTATTACATCCATCTTC 57.666 36.000 0.00 0.00 0.00 2.87
3714 3927 6.867662 ACTTTATAATGCCAGATCTTTCCG 57.132 37.500 0.00 0.00 0.00 4.30
3721 3934 2.159382 GCCAGATCTTTCCGTTTCCAA 58.841 47.619 0.00 0.00 0.00 3.53
3770 3983 7.054751 AGTAGTACCCTTTCTTCATTATTGCC 58.945 38.462 0.00 0.00 0.00 4.52
3782 3995 8.450578 TCTTCATTATTGCCGTCAATATTTCT 57.549 30.769 0.00 0.00 42.75 2.52
3876 4090 8.292448 TGCTTAGATTTAACTTGCTCTTCTTTG 58.708 33.333 0.00 0.00 0.00 2.77
3950 4164 6.201997 ACATCAAACCTTTATTTTTGGAACGC 59.798 34.615 0.00 0.00 34.14 4.84
3969 4183 3.006537 ACGCCGCTTGGAGTTATATATGT 59.993 43.478 0.00 0.00 44.04 2.29
4015 4232 1.561076 TGACAGGCATCCTAGCACAAT 59.439 47.619 0.00 0.00 35.83 2.71
4018 4235 3.812053 GACAGGCATCCTAGCACAATAAG 59.188 47.826 0.00 0.00 35.83 1.73
4022 4239 4.884164 AGGCATCCTAGCACAATAAGTTTC 59.116 41.667 0.00 0.00 35.83 2.78
4062 4280 4.347000 TCACTACCTGGCTTGTTTTCTAGT 59.653 41.667 0.00 0.00 0.00 2.57
4065 4283 4.976540 ACCTGGCTTGTTTTCTAGTACT 57.023 40.909 0.00 0.00 0.00 2.73
4066 4284 6.723052 ACTACCTGGCTTGTTTTCTAGTACTA 59.277 38.462 1.89 1.89 0.00 1.82
4067 4285 5.791666 ACCTGGCTTGTTTTCTAGTACTAC 58.208 41.667 0.00 0.00 0.00 2.73
4068 4286 5.543020 ACCTGGCTTGTTTTCTAGTACTACT 59.457 40.000 0.00 0.00 0.00 2.57
4085 4303 8.418597 AGTACTACTCCTTTTCTATTCACACA 57.581 34.615 0.00 0.00 0.00 3.72
4136 4354 6.543465 CCCACATCATTCAGTGCTTAGATTTA 59.457 38.462 0.00 0.00 34.48 1.40
4138 4356 7.912250 CCACATCATTCAGTGCTTAGATTTAAC 59.088 37.037 0.00 0.00 34.48 2.01
4179 4492 4.944619 TGGATGGTGCTAGACTGATAAG 57.055 45.455 0.00 0.00 0.00 1.73
4188 4501 7.124901 TGGTGCTAGACTGATAAGAGAAATTCT 59.875 37.037 0.00 0.00 37.93 2.40
4189 4502 7.651704 GGTGCTAGACTGATAAGAGAAATTCTC 59.348 40.741 14.77 14.77 43.70 2.87
4203 4516 7.987750 GAGAAATTCTCTAAGACCAAAACCT 57.012 36.000 15.25 0.00 40.30 3.50
4204 4517 8.397575 GAGAAATTCTCTAAGACCAAAACCTT 57.602 34.615 15.25 0.00 40.30 3.50
4205 4518 8.768501 AGAAATTCTCTAAGACCAAAACCTTT 57.231 30.769 0.00 0.00 30.22 3.11
4206 4519 9.862149 AGAAATTCTCTAAGACCAAAACCTTTA 57.138 29.630 0.00 0.00 30.22 1.85
4329 4668 3.266510 TCACACTGGGCAATCTCATAC 57.733 47.619 0.00 0.00 0.00 2.39
4337 4676 6.992123 CACTGGGCAATCTCATACAATAGTTA 59.008 38.462 0.00 0.00 0.00 2.24
4343 4682 6.201044 GCAATCTCATACAATAGTTACGTGCT 59.799 38.462 0.00 0.00 0.00 4.40
4411 4750 6.509656 TGAACGTGTTACAATCAAGAGTACT 58.490 36.000 0.00 0.00 0.00 2.73
4412 4751 6.982141 TGAACGTGTTACAATCAAGAGTACTT 59.018 34.615 0.00 0.00 36.73 2.24
4413 4752 7.168637 TGAACGTGTTACAATCAAGAGTACTTC 59.831 37.037 0.00 0.00 33.70 3.01
4414 4753 6.509656 ACGTGTTACAATCAAGAGTACTTCA 58.490 36.000 0.00 0.00 33.70 3.02
4436 4779 3.795877 TGCTGCATTCGTCTGATATTCA 58.204 40.909 0.00 0.00 0.00 2.57
4747 5093 2.673523 GGCCAGACTCACCAGCAT 59.326 61.111 0.00 0.00 0.00 3.79
4951 5300 2.728435 GGTGACCTTCGCCGGGTAT 61.728 63.158 2.18 0.00 37.29 2.73
5022 5380 0.878523 CACCACCAACATCACGTCGT 60.879 55.000 0.00 0.00 0.00 4.34
5025 5383 1.372499 ACCAACATCACGTCGTCGG 60.372 57.895 7.05 0.00 41.85 4.79
5158 5525 4.436998 GGGCTGGAGGACGTCGTG 62.437 72.222 16.63 2.47 0.00 4.35
5182 5549 2.889617 CCGTACGTGATGGGCTCA 59.110 61.111 15.21 0.00 0.00 4.26
5250 5620 1.202486 GCTCCATGATTTCGTCGGGTA 60.202 52.381 0.00 0.00 0.00 3.69
5255 5625 2.212869 TGATTTCGTCGGGTAATCGG 57.787 50.000 0.00 0.00 32.30 4.18
5534 6110 6.883744 AGCTTGAAAATACCTTGTTCCAAAA 58.116 32.000 0.00 0.00 0.00 2.44
5581 6160 4.882427 GTCCTAGAGCTTTTGGATTAACCC 59.118 45.833 10.51 0.00 38.00 4.11
5589 6168 4.616604 GCTTTTGGATTAACCCGTGGTAAC 60.617 45.833 0.00 0.00 33.12 2.50
5660 6239 6.239176 CCTCTTGTTTATGCCCAAAAGTGTTA 60.239 38.462 0.00 0.00 0.00 2.41
5661 6240 7.113658 TCTTGTTTATGCCCAAAAGTGTTAA 57.886 32.000 0.00 0.00 0.00 2.01
5662 6241 7.206687 TCTTGTTTATGCCCAAAAGTGTTAAG 58.793 34.615 0.00 0.00 0.00 1.85
5663 6242 6.716934 TGTTTATGCCCAAAAGTGTTAAGA 57.283 33.333 0.00 0.00 0.00 2.10
5664 6243 6.508777 TGTTTATGCCCAAAAGTGTTAAGAC 58.491 36.000 0.00 0.00 0.00 3.01
5665 6244 6.096987 TGTTTATGCCCAAAAGTGTTAAGACA 59.903 34.615 5.45 0.00 0.00 3.41
5666 6245 6.909550 TTATGCCCAAAAGTGTTAAGACAT 57.090 33.333 5.45 0.00 38.23 3.06
5667 6246 4.846779 TGCCCAAAAGTGTTAAGACATC 57.153 40.909 5.45 0.00 38.23 3.06
5668 6247 3.252215 TGCCCAAAAGTGTTAAGACATCG 59.748 43.478 5.45 0.00 38.23 3.84
5669 6248 3.821841 CCCAAAAGTGTTAAGACATCGC 58.178 45.455 5.45 0.00 38.23 4.58
5670 6249 3.252215 CCCAAAAGTGTTAAGACATCGCA 59.748 43.478 5.45 0.00 38.23 5.10
5671 6250 4.261405 CCCAAAAGTGTTAAGACATCGCAA 60.261 41.667 5.45 0.00 38.23 4.85
5683 6262 3.006967 AGACATCGCAAAGAGTTACCACT 59.993 43.478 0.00 0.00 35.17 4.00
5715 6297 3.146104 ACTGCAGCTCCTTGTTTATGT 57.854 42.857 15.27 0.00 0.00 2.29
5738 6320 5.977129 GTCCAAAAGTTTTACCATCACTGTG 59.023 40.000 0.17 0.17 0.00 3.66
5754 6336 0.752743 TGTGCTGCAGCTCCTTGTTT 60.753 50.000 36.61 0.00 42.66 2.83
5760 6342 0.099436 GCAGCTCCTTGTTTATGCCG 59.901 55.000 0.00 0.00 0.00 5.69
5769 6351 4.580995 TCCTTGTTTATGCCGAAAAGTTCA 59.419 37.500 0.00 0.00 0.00 3.18
5778 6360 5.570234 TGCCGAAAAGTTCAAGTTTTACT 57.430 34.783 2.79 0.00 31.40 2.24
5842 6424 1.987807 ATGACCATCTTCCGGCCTGG 61.988 60.000 0.00 2.42 40.09 4.45
5866 6450 5.869753 ATGTTAGCCTTTCGATGATATGC 57.130 39.130 0.00 0.00 0.00 3.14
5887 6475 0.321298 ATGAAACCCGCTGCGTTAGT 60.321 50.000 21.59 12.21 0.00 2.24
5989 6578 1.208293 GCCTCCTAAAGTCTGGACAGG 59.792 57.143 3.51 1.99 0.00 4.00
6046 6635 2.222213 CCGTCACGCTAACAAATTGTCA 59.778 45.455 0.00 0.00 0.00 3.58
6047 6636 3.120338 CCGTCACGCTAACAAATTGTCAT 60.120 43.478 0.00 0.00 0.00 3.06
6172 6770 3.406361 GCGCTGTCAGTGTCGTGG 61.406 66.667 14.69 0.00 0.00 4.94
6189 6793 7.806487 AGTGTCGTGGTGTGTATTATATTATCG 59.194 37.037 0.00 0.00 0.00 2.92
6225 6832 0.921896 AAGCCCATGCATGGTAGAGT 59.078 50.000 37.30 18.93 46.65 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.995220 GCCACCGATTTAATTGTATACTAATCA 58.005 33.333 4.17 0.00 0.00 2.57
4 5 8.166706 CGCCACCGATTTAATTGTATACTAATC 58.833 37.037 4.17 5.21 36.29 1.75
5 6 7.658575 ACGCCACCGATTTAATTGTATACTAAT 59.341 33.333 4.17 0.10 38.29 1.73
6 7 6.985645 ACGCCACCGATTTAATTGTATACTAA 59.014 34.615 4.17 0.00 38.29 2.24
7 8 6.514947 ACGCCACCGATTTAATTGTATACTA 58.485 36.000 4.17 0.00 38.29 1.82
8 9 5.362263 ACGCCACCGATTTAATTGTATACT 58.638 37.500 4.17 0.00 38.29 2.12
9 10 5.234757 TGACGCCACCGATTTAATTGTATAC 59.765 40.000 0.00 0.00 38.29 1.47
10 11 5.234757 GTGACGCCACCGATTTAATTGTATA 59.765 40.000 0.00 0.00 37.33 1.47
11 12 4.034742 GTGACGCCACCGATTTAATTGTAT 59.965 41.667 0.00 0.00 37.33 2.29
12 13 3.371591 GTGACGCCACCGATTTAATTGTA 59.628 43.478 0.00 0.00 37.33 2.41
13 14 2.160813 GTGACGCCACCGATTTAATTGT 59.839 45.455 0.00 0.00 37.33 2.71
14 15 2.160615 TGTGACGCCACCGATTTAATTG 59.839 45.455 0.00 0.00 42.53 2.32
15 16 2.428491 TGTGACGCCACCGATTTAATT 58.572 42.857 0.00 0.00 42.53 1.40
16 17 2.102070 TGTGACGCCACCGATTTAAT 57.898 45.000 0.00 0.00 42.53 1.40
17 18 1.880271 TTGTGACGCCACCGATTTAA 58.120 45.000 0.00 0.00 42.53 1.52
18 19 1.735018 CATTGTGACGCCACCGATTTA 59.265 47.619 0.00 0.00 42.53 1.40
19 20 0.521291 CATTGTGACGCCACCGATTT 59.479 50.000 0.00 0.00 42.53 2.17
20 21 1.922135 GCATTGTGACGCCACCGATT 61.922 55.000 0.00 0.00 42.53 3.34
21 22 2.398554 GCATTGTGACGCCACCGAT 61.399 57.895 0.00 0.00 42.53 4.18
22 23 3.047280 GCATTGTGACGCCACCGA 61.047 61.111 0.00 0.00 42.53 4.69
23 24 3.027170 GAGCATTGTGACGCCACCG 62.027 63.158 0.00 0.00 42.53 4.94
24 25 1.237285 AAGAGCATTGTGACGCCACC 61.237 55.000 0.00 0.00 42.53 4.61
25 26 0.110056 CAAGAGCATTGTGACGCCAC 60.110 55.000 0.00 0.00 43.46 5.01
26 27 0.250252 TCAAGAGCATTGTGACGCCA 60.250 50.000 2.11 0.00 0.00 5.69
27 28 0.166814 GTCAAGAGCATTGTGACGCC 59.833 55.000 2.11 0.00 32.98 5.68
28 29 0.166814 GGTCAAGAGCATTGTGACGC 59.833 55.000 2.11 0.00 42.11 5.19
29 30 0.439985 CGGTCAAGAGCATTGTGACG 59.560 55.000 0.00 2.63 42.11 4.35
30 31 1.195448 CACGGTCAAGAGCATTGTGAC 59.805 52.381 0.00 0.00 40.77 3.67
31 32 1.202639 ACACGGTCAAGAGCATTGTGA 60.203 47.619 11.03 0.00 0.00 3.58
32 33 1.069703 CACACGGTCAAGAGCATTGTG 60.070 52.381 13.32 13.32 36.67 3.33
33 34 1.229428 CACACGGTCAAGAGCATTGT 58.771 50.000 0.00 0.00 0.00 2.71
34 35 0.110056 GCACACGGTCAAGAGCATTG 60.110 55.000 0.00 0.00 0.00 2.82
35 36 0.250467 AGCACACGGTCAAGAGCATT 60.250 50.000 0.00 0.00 0.00 3.56
36 37 0.952497 CAGCACACGGTCAAGAGCAT 60.952 55.000 0.00 0.00 0.00 3.79
37 38 1.595109 CAGCACACGGTCAAGAGCA 60.595 57.895 0.00 0.00 0.00 4.26
38 39 2.320587 CCAGCACACGGTCAAGAGC 61.321 63.158 0.00 0.00 0.00 4.09
39 40 1.669115 CCCAGCACACGGTCAAGAG 60.669 63.158 0.00 0.00 0.00 2.85
40 41 2.425592 CCCAGCACACGGTCAAGA 59.574 61.111 0.00 0.00 0.00 3.02
41 42 3.357079 GCCCAGCACACGGTCAAG 61.357 66.667 0.00 0.00 0.00 3.02
42 43 3.872603 AGCCCAGCACACGGTCAA 61.873 61.111 0.00 0.00 0.00 3.18
43 44 4.624364 CAGCCCAGCACACGGTCA 62.624 66.667 0.00 0.00 0.00 4.02
44 45 3.825160 TTCAGCCCAGCACACGGTC 62.825 63.158 0.00 0.00 0.00 4.79
45 46 3.832237 CTTCAGCCCAGCACACGGT 62.832 63.158 0.00 0.00 0.00 4.83
46 47 3.052082 CTTCAGCCCAGCACACGG 61.052 66.667 0.00 0.00 0.00 4.94
47 48 1.165907 TTTCTTCAGCCCAGCACACG 61.166 55.000 0.00 0.00 0.00 4.49
48 49 1.251251 ATTTCTTCAGCCCAGCACAC 58.749 50.000 0.00 0.00 0.00 3.82
49 50 2.877097 TATTTCTTCAGCCCAGCACA 57.123 45.000 0.00 0.00 0.00 4.57
50 51 4.519540 TTTTATTTCTTCAGCCCAGCAC 57.480 40.909 0.00 0.00 0.00 4.40
51 52 6.835488 AGATATTTTATTTCTTCAGCCCAGCA 59.165 34.615 0.00 0.00 0.00 4.41
52 53 7.013655 TGAGATATTTTATTTCTTCAGCCCAGC 59.986 37.037 0.00 0.00 0.00 4.85
53 54 8.455903 TGAGATATTTTATTTCTTCAGCCCAG 57.544 34.615 0.00 0.00 0.00 4.45
54 55 8.055181 ACTGAGATATTTTATTTCTTCAGCCCA 58.945 33.333 0.00 0.00 0.00 5.36
55 56 8.457238 ACTGAGATATTTTATTTCTTCAGCCC 57.543 34.615 0.00 0.00 0.00 5.19
56 57 9.113838 TGACTGAGATATTTTATTTCTTCAGCC 57.886 33.333 0.00 0.00 0.00 4.85
92 93 5.020795 AGTCTGGTTTTACCACACCTTTTT 58.979 37.500 1.32 0.00 44.79 1.94
93 94 4.606210 AGTCTGGTTTTACCACACCTTTT 58.394 39.130 1.32 0.00 44.79 2.27
94 95 4.204799 GAGTCTGGTTTTACCACACCTTT 58.795 43.478 1.32 0.00 44.79 3.11
95 96 3.743269 CGAGTCTGGTTTTACCACACCTT 60.743 47.826 1.32 0.00 44.79 3.50
96 97 2.224209 CGAGTCTGGTTTTACCACACCT 60.224 50.000 1.32 0.00 44.79 4.00
97 98 2.140717 CGAGTCTGGTTTTACCACACC 58.859 52.381 1.32 0.00 44.79 4.16
98 99 3.102052 TCGAGTCTGGTTTTACCACAC 57.898 47.619 0.00 0.00 44.79 3.82
99 100 3.823281 TTCGAGTCTGGTTTTACCACA 57.177 42.857 0.00 0.00 44.79 4.17
100 101 4.389077 CAGATTCGAGTCTGGTTTTACCAC 59.611 45.833 25.69 0.00 44.79 4.16
110 111 0.460987 GTGCCCCAGATTCGAGTCTG 60.461 60.000 26.25 26.25 44.12 3.51
111 112 1.901085 GTGCCCCAGATTCGAGTCT 59.099 57.895 4.34 4.34 0.00 3.24
112 113 1.519455 CGTGCCCCAGATTCGAGTC 60.519 63.158 0.00 0.00 0.00 3.36
113 114 2.579201 CGTGCCCCAGATTCGAGT 59.421 61.111 0.00 0.00 0.00 4.18
114 115 2.202932 CCGTGCCCCAGATTCGAG 60.203 66.667 0.00 0.00 0.00 4.04
115 116 3.000819 ACCGTGCCCCAGATTCGA 61.001 61.111 0.00 0.00 0.00 3.71
116 117 2.819595 CACCGTGCCCCAGATTCG 60.820 66.667 0.00 0.00 0.00 3.34
117 118 2.438434 CCACCGTGCCCCAGATTC 60.438 66.667 0.00 0.00 0.00 2.52
118 119 3.256960 ACCACCGTGCCCCAGATT 61.257 61.111 0.00 0.00 0.00 2.40
119 120 4.033776 CACCACCGTGCCCCAGAT 62.034 66.667 0.00 0.00 32.04 2.90
121 122 2.684192 TTTACACCACCGTGCCCCAG 62.684 60.000 0.00 0.00 44.40 4.45
122 123 2.280404 TTTTACACCACCGTGCCCCA 62.280 55.000 0.00 0.00 44.40 4.96
123 124 0.896479 ATTTTACACCACCGTGCCCC 60.896 55.000 0.00 0.00 44.40 5.80
124 125 0.963225 AATTTTACACCACCGTGCCC 59.037 50.000 0.00 0.00 44.40 5.36
125 126 1.883926 AGAATTTTACACCACCGTGCC 59.116 47.619 0.00 0.00 44.40 5.01
126 127 2.351350 CCAGAATTTTACACCACCGTGC 60.351 50.000 0.00 0.00 44.40 5.34
127 128 2.351350 GCCAGAATTTTACACCACCGTG 60.351 50.000 0.00 0.00 46.11 4.94
128 129 1.883926 GCCAGAATTTTACACCACCGT 59.116 47.619 0.00 0.00 0.00 4.83
129 130 1.883275 TGCCAGAATTTTACACCACCG 59.117 47.619 0.00 0.00 0.00 4.94
130 131 3.848726 CATGCCAGAATTTTACACCACC 58.151 45.455 0.00 0.00 0.00 4.61
131 132 3.253230 GCATGCCAGAATTTTACACCAC 58.747 45.455 6.36 0.00 0.00 4.16
132 133 2.896044 TGCATGCCAGAATTTTACACCA 59.104 40.909 16.68 0.00 0.00 4.17
133 134 3.591196 TGCATGCCAGAATTTTACACC 57.409 42.857 16.68 0.00 0.00 4.16
134 135 5.860641 CATTTGCATGCCAGAATTTTACAC 58.139 37.500 16.68 0.00 0.00 2.90
174 175 4.499526 CGGCTTAATTATGCATTTGCTCCA 60.500 41.667 21.03 0.00 42.66 3.86
175 176 3.983344 CGGCTTAATTATGCATTTGCTCC 59.017 43.478 21.03 0.00 42.66 4.70
182 183 0.240945 GCCGCGGCTTAATTATGCAT 59.759 50.000 41.71 3.79 38.26 3.96
187 188 1.525077 CCCTGCCGCGGCTTAATTA 60.525 57.895 45.79 27.01 42.51 1.40
188 189 2.828549 CCCTGCCGCGGCTTAATT 60.829 61.111 45.79 0.00 42.51 1.40
189 190 4.875713 CCCCTGCCGCGGCTTAAT 62.876 66.667 45.79 0.00 42.51 1.40
287 291 4.821589 GAGAGGCAACGGGCGGAG 62.822 72.222 0.00 0.00 46.16 4.63
289 293 4.821589 GAGAGAGGCAACGGGCGG 62.822 72.222 0.00 0.00 46.16 6.13
293 297 2.202676 GAGCGAGAGAGGCAACGG 60.203 66.667 0.00 0.00 46.39 4.44
295 299 2.883253 GCGAGCGAGAGAGGCAAC 60.883 66.667 0.00 0.00 0.00 4.17
296 300 4.482684 CGCGAGCGAGAGAGGCAA 62.483 66.667 12.58 0.00 42.83 4.52
329 333 2.379972 CTAATCCGTGAGACCTGGTCT 58.620 52.381 28.70 28.70 46.42 3.85
330 334 1.202428 GCTAATCCGTGAGACCTGGTC 60.202 57.143 19.20 19.20 0.00 4.02
331 335 0.824759 GCTAATCCGTGAGACCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
332 336 0.824109 TGCTAATCCGTGAGACCTGG 59.176 55.000 0.00 0.00 0.00 4.45
333 337 1.202463 CCTGCTAATCCGTGAGACCTG 60.202 57.143 0.00 0.00 0.00 4.00
334 338 1.115467 CCTGCTAATCCGTGAGACCT 58.885 55.000 0.00 0.00 0.00 3.85
335 339 0.824759 ACCTGCTAATCCGTGAGACC 59.175 55.000 0.00 0.00 0.00 3.85
336 340 1.476891 TCACCTGCTAATCCGTGAGAC 59.523 52.381 0.00 0.00 31.80 3.36
337 341 1.847328 TCACCTGCTAATCCGTGAGA 58.153 50.000 0.00 0.00 31.80 3.27
338 342 2.215907 CTCACCTGCTAATCCGTGAG 57.784 55.000 2.01 2.01 44.38 3.51
339 343 1.476891 GTCTCACCTGCTAATCCGTGA 59.523 52.381 0.00 0.00 34.26 4.35
340 344 1.471676 GGTCTCACCTGCTAATCCGTG 60.472 57.143 0.00 0.00 34.73 4.94
341 345 0.824759 GGTCTCACCTGCTAATCCGT 59.175 55.000 0.00 0.00 34.73 4.69
342 346 0.105039 GGGTCTCACCTGCTAATCCG 59.895 60.000 0.00 0.00 38.64 4.18
343 347 1.204146 TGGGTCTCACCTGCTAATCC 58.796 55.000 0.00 0.00 38.64 3.01
344 348 3.135530 AGAATGGGTCTCACCTGCTAATC 59.864 47.826 0.00 0.00 38.64 1.75
345 349 3.118112 CAGAATGGGTCTCACCTGCTAAT 60.118 47.826 0.00 0.00 38.64 1.73
346 350 2.237143 CAGAATGGGTCTCACCTGCTAA 59.763 50.000 0.00 0.00 38.64 3.09
347 351 1.833630 CAGAATGGGTCTCACCTGCTA 59.166 52.381 0.00 0.00 38.64 3.49
348 352 0.617413 CAGAATGGGTCTCACCTGCT 59.383 55.000 0.00 0.00 38.64 4.24
349 353 0.615331 TCAGAATGGGTCTCACCTGC 59.385 55.000 0.22 0.00 38.64 4.85
350 354 2.915349 CATCAGAATGGGTCTCACCTG 58.085 52.381 0.00 0.00 38.64 4.00
351 355 3.893100 ATCCATCAGAATGGGTCTCACCT 60.893 47.826 4.68 0.00 43.29 4.00
352 356 2.441001 ATCCATCAGAATGGGTCTCACC 59.559 50.000 4.68 0.00 43.29 4.02
353 357 3.135348 TCATCCATCAGAATGGGTCTCAC 59.865 47.826 4.68 0.00 43.29 3.51
354 358 3.135348 GTCATCCATCAGAATGGGTCTCA 59.865 47.826 4.68 0.00 43.29 3.27
355 359 3.135348 TGTCATCCATCAGAATGGGTCTC 59.865 47.826 4.68 0.00 43.29 3.36
356 360 3.117745 TGTCATCCATCAGAATGGGTCT 58.882 45.455 4.68 0.00 43.29 3.85
357 361 3.209410 GTGTCATCCATCAGAATGGGTC 58.791 50.000 4.68 0.00 43.29 4.46
361 365 2.610833 CCACGTGTCATCCATCAGAATG 59.389 50.000 15.65 0.00 37.54 2.67
362 366 2.910199 CCACGTGTCATCCATCAGAAT 58.090 47.619 15.65 0.00 0.00 2.40
363 367 1.675714 GCCACGTGTCATCCATCAGAA 60.676 52.381 15.65 0.00 0.00 3.02
364 368 0.108186 GCCACGTGTCATCCATCAGA 60.108 55.000 15.65 0.00 0.00 3.27
365 369 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
366 370 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
367 371 1.331756 GAATGCCACGTGTCATCCATC 59.668 52.381 13.12 3.25 0.00 3.51
368 372 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
369 373 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
370 374 0.447801 GTGAATGCCACGTGTCATCC 59.552 55.000 13.12 0.00 35.86 3.51
371 375 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
379 383 3.494251 GGTTTGTGATTTGTGAATGCCAC 59.506 43.478 0.00 0.00 45.88 5.01
380 384 3.133542 TGGTTTGTGATTTGTGAATGCCA 59.866 39.130 0.00 0.00 0.00 4.92
381 385 3.726607 TGGTTTGTGATTTGTGAATGCC 58.273 40.909 0.00 0.00 0.00 4.40
382 386 4.389687 GGATGGTTTGTGATTTGTGAATGC 59.610 41.667 0.00 0.00 0.00 3.56
383 387 5.406175 GTGGATGGTTTGTGATTTGTGAATG 59.594 40.000 0.00 0.00 0.00 2.67
384 388 5.511202 GGTGGATGGTTTGTGATTTGTGAAT 60.511 40.000 0.00 0.00 0.00 2.57
385 389 4.202202 GGTGGATGGTTTGTGATTTGTGAA 60.202 41.667 0.00 0.00 0.00 3.18
386 390 3.320541 GGTGGATGGTTTGTGATTTGTGA 59.679 43.478 0.00 0.00 0.00 3.58
387 391 3.554752 GGGTGGATGGTTTGTGATTTGTG 60.555 47.826 0.00 0.00 0.00 3.33
388 392 2.632512 GGGTGGATGGTTTGTGATTTGT 59.367 45.455 0.00 0.00 0.00 2.83
389 393 2.028203 GGGGTGGATGGTTTGTGATTTG 60.028 50.000 0.00 0.00 0.00 2.32
390 394 2.256306 GGGGTGGATGGTTTGTGATTT 58.744 47.619 0.00 0.00 0.00 2.17
391 395 1.148867 TGGGGTGGATGGTTTGTGATT 59.851 47.619 0.00 0.00 0.00 2.57
392 396 0.783206 TGGGGTGGATGGTTTGTGAT 59.217 50.000 0.00 0.00 0.00 3.06
393 397 0.178975 GTGGGGTGGATGGTTTGTGA 60.179 55.000 0.00 0.00 0.00 3.58
394 398 1.184970 GGTGGGGTGGATGGTTTGTG 61.185 60.000 0.00 0.00 0.00 3.33
395 399 1.155155 GGTGGGGTGGATGGTTTGT 59.845 57.895 0.00 0.00 0.00 2.83
396 400 1.609210 GGGTGGGGTGGATGGTTTG 60.609 63.158 0.00 0.00 0.00 2.93
397 401 1.782608 AGGGTGGGGTGGATGGTTT 60.783 57.895 0.00 0.00 0.00 3.27
398 402 2.121042 AGGGTGGGGTGGATGGTT 60.121 61.111 0.00 0.00 0.00 3.67
399 403 2.614013 GAGGGTGGGGTGGATGGT 60.614 66.667 0.00 0.00 0.00 3.55
400 404 3.420482 GGAGGGTGGGGTGGATGG 61.420 72.222 0.00 0.00 0.00 3.51
401 405 1.999634 GATGGAGGGTGGGGTGGATG 62.000 65.000 0.00 0.00 0.00 3.51
402 406 1.697754 GATGGAGGGTGGGGTGGAT 60.698 63.158 0.00 0.00 0.00 3.41
403 407 2.286121 GATGGAGGGTGGGGTGGA 60.286 66.667 0.00 0.00 0.00 4.02
404 408 2.286425 AGATGGAGGGTGGGGTGG 60.286 66.667 0.00 0.00 0.00 4.61
405 409 1.207488 TTCAGATGGAGGGTGGGGTG 61.207 60.000 0.00 0.00 0.00 4.61
406 410 0.477597 TTTCAGATGGAGGGTGGGGT 60.478 55.000 0.00 0.00 0.00 4.95
407 411 0.929244 ATTTCAGATGGAGGGTGGGG 59.071 55.000 0.00 0.00 0.00 4.96
408 412 1.565759 TGATTTCAGATGGAGGGTGGG 59.434 52.381 0.00 0.00 0.00 4.61
409 413 2.422519 CCTGATTTCAGATGGAGGGTGG 60.423 54.545 9.15 0.00 46.59 4.61
410 414 2.422519 CCCTGATTTCAGATGGAGGGTG 60.423 54.545 9.15 0.00 46.59 4.61
411 415 1.849039 CCCTGATTTCAGATGGAGGGT 59.151 52.381 9.15 0.00 46.59 4.34
412 416 1.144503 CCCCTGATTTCAGATGGAGGG 59.855 57.143 9.15 6.77 46.59 4.30
413 417 1.144503 CCCCCTGATTTCAGATGGAGG 59.855 57.143 9.15 1.58 46.59 4.30
414 418 2.653234 CCCCCTGATTTCAGATGGAG 57.347 55.000 9.15 1.28 46.59 3.86
431 435 3.137360 ACAAAGCATCTAATCTCTCCCCC 59.863 47.826 0.00 0.00 0.00 5.40
432 436 4.133078 CACAAAGCATCTAATCTCTCCCC 58.867 47.826 0.00 0.00 0.00 4.81
433 437 5.028549 TCACAAAGCATCTAATCTCTCCC 57.971 43.478 0.00 0.00 0.00 4.30
434 438 7.066766 ACAAATCACAAAGCATCTAATCTCTCC 59.933 37.037 0.00 0.00 0.00 3.71
435 439 7.909121 CACAAATCACAAAGCATCTAATCTCTC 59.091 37.037 0.00 0.00 0.00 3.20
436 440 7.609146 TCACAAATCACAAAGCATCTAATCTCT 59.391 33.333 0.00 0.00 0.00 3.10
437 441 7.755591 TCACAAATCACAAAGCATCTAATCTC 58.244 34.615 0.00 0.00 0.00 2.75
438 442 7.692460 TCACAAATCACAAAGCATCTAATCT 57.308 32.000 0.00 0.00 0.00 2.40
439 443 8.804743 CATTCACAAATCACAAAGCATCTAATC 58.195 33.333 0.00 0.00 0.00 1.75
440 444 8.308931 ACATTCACAAATCACAAAGCATCTAAT 58.691 29.630 0.00 0.00 0.00 1.73
441 445 7.660112 ACATTCACAAATCACAAAGCATCTAA 58.340 30.769 0.00 0.00 0.00 2.10
442 446 7.040548 TGACATTCACAAATCACAAAGCATCTA 60.041 33.333 0.00 0.00 0.00 1.98
443 447 6.092955 ACATTCACAAATCACAAAGCATCT 57.907 33.333 0.00 0.00 0.00 2.90
444 448 5.921976 TGACATTCACAAATCACAAAGCATC 59.078 36.000 0.00 0.00 0.00 3.91
445 449 5.693104 GTGACATTCACAAATCACAAAGCAT 59.307 36.000 1.34 0.00 46.22 3.79
446 450 5.042593 GTGACATTCACAAATCACAAAGCA 58.957 37.500 1.34 0.00 46.22 3.91
447 451 5.565723 GTGACATTCACAAATCACAAAGC 57.434 39.130 1.34 0.00 46.22 3.51
462 466 4.643334 CCCTGATGAATGACATGTGACATT 59.357 41.667 1.15 7.87 41.60 2.71
463 467 4.204799 CCCTGATGAATGACATGTGACAT 58.795 43.478 1.15 0.00 39.56 3.06
464 468 3.613030 CCCTGATGAATGACATGTGACA 58.387 45.455 1.15 0.00 39.56 3.58
465 469 2.357009 GCCCTGATGAATGACATGTGAC 59.643 50.000 1.15 0.00 39.56 3.67
466 470 2.646930 GCCCTGATGAATGACATGTGA 58.353 47.619 1.15 0.00 39.56 3.58
467 471 1.332686 CGCCCTGATGAATGACATGTG 59.667 52.381 1.15 0.00 39.56 3.21
468 472 1.671979 CGCCCTGATGAATGACATGT 58.328 50.000 0.00 0.00 39.56 3.21
469 473 0.949397 CCGCCCTGATGAATGACATG 59.051 55.000 0.00 0.00 39.56 3.21
470 474 0.179009 CCCGCCCTGATGAATGACAT 60.179 55.000 0.00 0.00 42.47 3.06
471 475 1.224315 CCCGCCCTGATGAATGACA 59.776 57.895 0.00 0.00 0.00 3.58
472 476 0.815615 GACCCGCCCTGATGAATGAC 60.816 60.000 0.00 0.00 0.00 3.06
473 477 0.982852 AGACCCGCCCTGATGAATGA 60.983 55.000 0.00 0.00 0.00 2.57
474 478 0.107017 AAGACCCGCCCTGATGAATG 60.107 55.000 0.00 0.00 0.00 2.67
475 479 1.141053 GTAAGACCCGCCCTGATGAAT 59.859 52.381 0.00 0.00 0.00 2.57
476 480 0.539986 GTAAGACCCGCCCTGATGAA 59.460 55.000 0.00 0.00 0.00 2.57
477 481 1.335132 GGTAAGACCCGCCCTGATGA 61.335 60.000 0.00 0.00 30.04 2.92
478 482 1.146263 GGTAAGACCCGCCCTGATG 59.854 63.158 0.00 0.00 30.04 3.07
479 483 1.003051 AGGTAAGACCCGCCCTGAT 59.997 57.895 0.00 0.00 39.75 2.90
480 484 1.987855 CAGGTAAGACCCGCCCTGA 60.988 63.158 0.00 0.00 45.97 3.86
481 485 1.338136 ATCAGGTAAGACCCGCCCTG 61.338 60.000 0.00 0.00 44.74 4.45
482 486 0.620700 AATCAGGTAAGACCCGCCCT 60.621 55.000 0.00 0.00 39.75 5.19
483 487 0.255033 AAATCAGGTAAGACCCGCCC 59.745 55.000 0.00 0.00 39.75 6.13
484 488 2.994186 TAAATCAGGTAAGACCCGCC 57.006 50.000 0.00 0.00 39.75 6.13
485 489 5.790593 TCATATAAATCAGGTAAGACCCGC 58.209 41.667 0.00 0.00 39.75 6.13
486 490 7.091443 GTCTCATATAAATCAGGTAAGACCCG 58.909 42.308 0.00 0.00 39.75 5.28
487 491 7.387643 GGTCTCATATAAATCAGGTAAGACCC 58.612 42.308 6.47 0.00 42.77 4.46
488 492 8.091449 CAGGTCTCATATAAATCAGGTAAGACC 58.909 40.741 9.19 9.19 46.81 3.85
489 493 8.091449 CCAGGTCTCATATAAATCAGGTAAGAC 58.909 40.741 0.00 0.00 0.00 3.01
490 494 7.789831 ACCAGGTCTCATATAAATCAGGTAAGA 59.210 37.037 0.00 0.00 0.00 2.10
491 495 7.967908 ACCAGGTCTCATATAAATCAGGTAAG 58.032 38.462 0.00 0.00 0.00 2.34
492 496 7.789831 AGACCAGGTCTCATATAAATCAGGTAA 59.210 37.037 17.31 0.00 38.71 2.85
493 497 7.306013 AGACCAGGTCTCATATAAATCAGGTA 58.694 38.462 17.31 0.00 38.71 3.08
494 498 6.146760 AGACCAGGTCTCATATAAATCAGGT 58.853 40.000 17.31 0.00 38.71 4.00
495 499 6.678568 AGACCAGGTCTCATATAAATCAGG 57.321 41.667 17.31 0.00 38.71 3.86
508 512 4.066490 CGAGATTATACGAGACCAGGTCT 58.934 47.826 23.18 23.18 46.42 3.85
509 513 3.365164 GCGAGATTATACGAGACCAGGTC 60.365 52.174 12.25 12.25 0.00 3.85
510 514 2.553172 GCGAGATTATACGAGACCAGGT 59.447 50.000 0.00 0.00 0.00 4.00
511 515 2.814919 AGCGAGATTATACGAGACCAGG 59.185 50.000 0.00 0.00 0.00 4.45
512 516 4.436317 GCTAGCGAGATTATACGAGACCAG 60.436 50.000 0.00 0.00 0.00 4.00
513 517 3.436015 GCTAGCGAGATTATACGAGACCA 59.564 47.826 0.00 0.00 0.00 4.02
514 518 3.685756 AGCTAGCGAGATTATACGAGACC 59.314 47.826 9.55 0.00 0.00 3.85
515 519 4.932268 AGCTAGCGAGATTATACGAGAC 57.068 45.455 9.55 0.00 0.00 3.36
516 520 5.389620 CGAAAGCTAGCGAGATTATACGAGA 60.390 44.000 9.55 0.00 28.99 4.04
517 521 4.784045 CGAAAGCTAGCGAGATTATACGAG 59.216 45.833 9.55 0.00 28.99 4.18
518 522 4.709640 CGAAAGCTAGCGAGATTATACGA 58.290 43.478 9.55 0.00 28.99 3.43
641 649 2.791868 GGTGTTGGTGTGGTTGGGC 61.792 63.158 0.00 0.00 0.00 5.36
643 651 2.015227 GCTGGTGTTGGTGTGGTTGG 62.015 60.000 0.00 0.00 0.00 3.77
644 652 1.318886 TGCTGGTGTTGGTGTGGTTG 61.319 55.000 0.00 0.00 0.00 3.77
645 653 1.000270 TGCTGGTGTTGGTGTGGTT 60.000 52.632 0.00 0.00 0.00 3.67
646 654 1.453745 CTGCTGGTGTTGGTGTGGT 60.454 57.895 0.00 0.00 0.00 4.16
665 683 2.570706 GTGCTCAGCTCAGCTCGA 59.429 61.111 12.05 0.00 40.39 4.04
726 744 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
727 745 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
728 746 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
729 747 7.531857 TTATCTCTCTCTCTCTCTCTCTCTC 57.468 44.000 0.00 0.00 0.00 3.20
730 748 7.921041 TTTATCTCTCTCTCTCTCTCTCTCT 57.079 40.000 0.00 0.00 0.00 3.10
731 749 7.659390 CCTTTTATCTCTCTCTCTCTCTCTCTC 59.341 44.444 0.00 0.00 0.00 3.20
732 750 7.512992 CCTTTTATCTCTCTCTCTCTCTCTCT 58.487 42.308 0.00 0.00 0.00 3.10
733 751 6.205658 GCCTTTTATCTCTCTCTCTCTCTCTC 59.794 46.154 0.00 0.00 0.00 3.20
734 752 6.064717 GCCTTTTATCTCTCTCTCTCTCTCT 58.935 44.000 0.00 0.00 0.00 3.10
735 753 5.049405 CGCCTTTTATCTCTCTCTCTCTCTC 60.049 48.000 0.00 0.00 0.00 3.20
736 754 4.821805 CGCCTTTTATCTCTCTCTCTCTCT 59.178 45.833 0.00 0.00 0.00 3.10
737 755 4.556699 GCGCCTTTTATCTCTCTCTCTCTC 60.557 50.000 0.00 0.00 0.00 3.20
738 756 3.317993 GCGCCTTTTATCTCTCTCTCTCT 59.682 47.826 0.00 0.00 0.00 3.10
739 757 3.638484 GCGCCTTTTATCTCTCTCTCTC 58.362 50.000 0.00 0.00 0.00 3.20
740 758 2.034053 CGCGCCTTTTATCTCTCTCTCT 59.966 50.000 0.00 0.00 0.00 3.10
1204 1242 4.475444 TAGAGGGGTCAGGGGCGG 62.475 72.222 0.00 0.00 0.00 6.13
1211 1249 2.365635 GCTGGGCTAGAGGGGTCA 60.366 66.667 0.43 0.00 0.00 4.02
1227 1265 4.892965 TGCTGGTGGTGGTGGTGC 62.893 66.667 0.00 0.00 0.00 5.01
1407 1451 1.130749 GAGAGCGAGAAGTTCTGCGTA 59.869 52.381 10.90 0.00 40.65 4.42
1587 1631 1.064946 CACGTCGCAGATCTCCTCC 59.935 63.158 0.00 0.00 40.67 4.30
1731 1775 0.322975 TCTTCTTCCACTGCTGCTCC 59.677 55.000 0.00 0.00 0.00 4.70
1795 1843 4.500716 GGAAAAAGTCGGAAATTTGGAGCA 60.501 41.667 0.00 0.00 0.00 4.26
1829 1877 0.882484 TTGCAGTGGCGACATCGAAA 60.882 50.000 5.26 0.00 46.14 3.46
1835 1883 0.955428 GGAGAATTGCAGTGGCGACA 60.955 55.000 0.45 0.00 45.35 4.35
1837 1885 1.741401 CGGAGAATTGCAGTGGCGA 60.741 57.895 0.00 0.00 45.35 5.54
2003 2051 2.947448 AGGAAAATCCGAGCAAATGC 57.053 45.000 0.00 0.00 42.75 3.56
2087 2141 7.729124 AATCAACATCCAATCTTTGATCCTT 57.271 32.000 0.00 0.00 37.64 3.36
2152 2206 5.185635 CCAATCAGTTGTGGTTCCATGTATT 59.814 40.000 0.00 0.00 33.36 1.89
2153 2207 4.706476 CCAATCAGTTGTGGTTCCATGTAT 59.294 41.667 0.00 0.00 33.36 2.29
2160 2214 2.712057 CTGCCAATCAGTTGTGGTTC 57.288 50.000 0.00 0.00 38.02 3.62
2175 2229 3.050275 GCGTTCCAGGACACTGCC 61.050 66.667 0.00 0.00 43.53 4.85
2180 2234 1.228124 CCCAAAGCGTTCCAGGACA 60.228 57.895 0.00 0.00 0.00 4.02
2186 2240 1.004679 TACCGTCCCAAAGCGTTCC 60.005 57.895 0.00 0.00 0.00 3.62
2221 2275 0.521735 CAGGCCAAAGTTTCGCTACC 59.478 55.000 5.01 0.00 0.00 3.18
2227 2281 2.622942 TGACATGACAGGCCAAAGTTTC 59.377 45.455 5.01 0.00 0.00 2.78
2255 2309 5.505489 CCATGTGAAAGATGAAACAACACGA 60.505 40.000 0.00 0.00 40.63 4.35
2271 2325 7.931015 ATTACTCCTATCCTAACCATGTGAA 57.069 36.000 0.00 0.00 0.00 3.18
2294 2348 2.185350 CGCTGCGAGAGGGTCAAT 59.815 61.111 18.66 0.00 0.00 2.57
2418 2477 8.677148 TTAATAAAGAAGTCAGACAAGCAAGT 57.323 30.769 2.66 0.00 0.00 3.16
2507 2566 2.197324 TTTGCCGGGAGCTTTGGT 59.803 55.556 2.18 0.00 44.23 3.67
2591 2657 3.729862 AGCTGGATTAGTAAGTACGGC 57.270 47.619 0.00 6.86 0.00 5.68
2629 2699 0.892755 TACCTCTTGCACACCTACGG 59.107 55.000 0.00 0.00 0.00 4.02
2805 2884 1.372087 CCTTGACGGGCATCTTGCTC 61.372 60.000 0.00 0.00 44.28 4.26
3124 3206 1.884579 CAGGCCCAGCATAATCATGTC 59.115 52.381 0.00 0.00 34.40 3.06
3152 3234 6.737254 TGCTTACTATCAGCTAAAACAACC 57.263 37.500 0.00 0.00 38.19 3.77
3170 3252 1.179152 TCGACACCGAGGATTGCTTA 58.821 50.000 0.00 0.00 40.30 3.09
3294 3382 7.223777 GTCCTAAAAGCTGTGACTGATAATCTC 59.776 40.741 0.00 0.00 0.00 2.75
3303 3391 4.781934 ACAAAGTCCTAAAAGCTGTGACT 58.218 39.130 0.00 0.00 37.88 3.41
3428 3530 0.255033 GGACGCCCTAACCAAATCCT 59.745 55.000 0.00 0.00 0.00 3.24
3477 3581 2.468777 CACAAGTTGTTTCGCAATCAGC 59.531 45.455 5.57 0.00 39.55 4.26
3506 3612 6.354938 CCCCCTAAAACTGGATTAGAAGTAC 58.645 44.000 4.03 0.00 33.16 2.73
3566 3673 6.212388 TGGATGTAATAGGCAAAACAACCAAT 59.788 34.615 8.20 0.00 40.50 3.16
3876 4090 2.094026 CCATCCAAGTAGGCCTTTTTGC 60.094 50.000 12.58 0.00 37.29 3.68
3926 4140 6.347321 GGCGTTCCAAAAATAAAGGTTTGATG 60.347 38.462 0.00 0.00 36.96 3.07
3929 4143 4.084797 CGGCGTTCCAAAAATAAAGGTTTG 60.085 41.667 0.00 0.00 35.03 2.93
3946 4160 2.614829 ATATAACTCCAAGCGGCGTT 57.385 45.000 9.37 0.00 42.82 4.84
3948 4162 3.585862 ACATATATAACTCCAAGCGGCG 58.414 45.455 0.51 0.51 0.00 6.46
3950 4164 8.547967 AAACATACATATATAACTCCAAGCGG 57.452 34.615 0.00 0.00 0.00 5.52
4015 4232 8.992349 TGATAGATCAGGGATCAAAGAAACTTA 58.008 33.333 8.75 0.00 41.12 2.24
4018 4235 7.278875 AGTGATAGATCAGGGATCAAAGAAAC 58.721 38.462 8.75 0.57 41.12 2.78
4022 4239 6.496565 AGGTAGTGATAGATCAGGGATCAAAG 59.503 42.308 8.75 0.00 41.12 2.77
4039 4257 3.857157 AGAAAACAAGCCAGGTAGTGA 57.143 42.857 0.00 0.00 0.00 3.41
4062 4280 7.093465 CCCTGTGTGAATAGAAAAGGAGTAGTA 60.093 40.741 0.00 0.00 0.00 1.82
4065 4283 5.570844 GCCCTGTGTGAATAGAAAAGGAGTA 60.571 44.000 0.00 0.00 0.00 2.59
4066 4284 4.807643 GCCCTGTGTGAATAGAAAAGGAGT 60.808 45.833 0.00 0.00 0.00 3.85
4067 4285 3.691609 GCCCTGTGTGAATAGAAAAGGAG 59.308 47.826 0.00 0.00 0.00 3.69
4068 4286 3.073798 TGCCCTGTGTGAATAGAAAAGGA 59.926 43.478 0.00 0.00 0.00 3.36
4120 4338 8.135382 AGAGTAGGTTAAATCTAAGCACTGAA 57.865 34.615 0.00 0.00 37.87 3.02
4136 4354 4.699925 TGCACACCTTTAAGAGTAGGTT 57.300 40.909 0.00 0.00 42.01 3.50
4138 4356 3.941483 CCATGCACACCTTTAAGAGTAGG 59.059 47.826 0.00 0.00 37.56 3.18
4179 4492 7.987750 AGGTTTTGGTCTTAGAGAATTTCTC 57.012 36.000 17.04 17.04 43.70 2.87
4196 4509 5.412286 CAGCATCCCCAAAATAAAGGTTTTG 59.588 40.000 5.39 5.39 44.63 2.44
4197 4510 5.559770 CAGCATCCCCAAAATAAAGGTTTT 58.440 37.500 0.00 0.00 0.00 2.43
4198 4511 4.565444 GCAGCATCCCCAAAATAAAGGTTT 60.565 41.667 0.00 0.00 0.00 3.27
4199 4512 3.055167 GCAGCATCCCCAAAATAAAGGTT 60.055 43.478 0.00 0.00 0.00 3.50
4200 4513 2.501316 GCAGCATCCCCAAAATAAAGGT 59.499 45.455 0.00 0.00 0.00 3.50
4201 4514 2.767960 AGCAGCATCCCCAAAATAAAGG 59.232 45.455 0.00 0.00 0.00 3.11
4202 4515 3.489738 CGAGCAGCATCCCCAAAATAAAG 60.490 47.826 0.00 0.00 0.00 1.85
4203 4516 2.426738 CGAGCAGCATCCCCAAAATAAA 59.573 45.455 0.00 0.00 0.00 1.40
4204 4517 2.023673 CGAGCAGCATCCCCAAAATAA 58.976 47.619 0.00 0.00 0.00 1.40
4205 4518 1.679139 CGAGCAGCATCCCCAAAATA 58.321 50.000 0.00 0.00 0.00 1.40
4206 4519 1.039233 CCGAGCAGCATCCCCAAAAT 61.039 55.000 0.00 0.00 0.00 1.82
4207 4520 1.678635 CCGAGCAGCATCCCCAAAA 60.679 57.895 0.00 0.00 0.00 2.44
4208 4521 2.045045 CCGAGCAGCATCCCCAAA 60.045 61.111 0.00 0.00 0.00 3.28
4212 4525 0.394565 ATAAGTCCGAGCAGCATCCC 59.605 55.000 0.00 0.00 0.00 3.85
4272 4611 4.678840 GCAAAACAAGCCAGATTAGGATGG 60.679 45.833 0.00 0.00 39.73 3.51
4411 4750 2.097680 TCAGACGAATGCAGCATGAA 57.902 45.000 9.18 0.00 39.69 2.57
4412 4751 2.320745 ATCAGACGAATGCAGCATGA 57.679 45.000 9.18 2.18 39.69 3.07
4413 4752 4.212636 TGAATATCAGACGAATGCAGCATG 59.787 41.667 9.18 0.00 40.87 4.06
4414 4753 4.383173 TGAATATCAGACGAATGCAGCAT 58.617 39.130 0.52 0.52 0.00 3.79
4736 5082 1.738099 GCGACGAATGCTGGTGAGT 60.738 57.895 0.00 0.00 0.00 3.41
4747 5093 4.967271 TGCTGCTGCTGCGACGAA 62.967 61.111 23.38 5.79 43.34 3.85
5011 5369 4.771356 CCGCCGACGACGTGATGT 62.771 66.667 4.58 0.00 43.93 3.06
5158 5525 1.585521 CATCACGTACGGGTCGCTC 60.586 63.158 18.57 0.00 0.00 5.03
5167 5534 1.209128 CGAATGAGCCCATCACGTAC 58.791 55.000 0.00 0.00 41.91 3.67
5365 5742 3.918253 ATCGAGCCAAGCCGCCAAA 62.918 57.895 0.00 0.00 0.00 3.28
5534 6110 0.548510 GGCAGGAGACCATAAAGCCT 59.451 55.000 0.00 0.00 37.67 4.58
5581 6160 4.734854 GCATGCATTTCATTAGTTACCACG 59.265 41.667 14.21 0.00 31.79 4.94
5589 6168 5.233476 GGAACACATGCATGCATTTCATTAG 59.767 40.000 30.48 21.50 33.90 1.73
5660 6239 3.746492 GTGGTAACTCTTTGCGATGTCTT 59.254 43.478 0.00 0.00 37.61 3.01
5661 6240 3.006967 AGTGGTAACTCTTTGCGATGTCT 59.993 43.478 0.00 0.00 36.99 3.41
5662 6241 3.326747 AGTGGTAACTCTTTGCGATGTC 58.673 45.455 0.00 0.00 36.99 3.06
5663 6242 3.402628 AGTGGTAACTCTTTGCGATGT 57.597 42.857 0.00 0.00 36.99 3.06
5664 6243 4.495422 ACTAGTGGTAACTCTTTGCGATG 58.505 43.478 0.00 0.00 41.51 3.84
5665 6244 4.803098 ACTAGTGGTAACTCTTTGCGAT 57.197 40.909 0.00 0.00 41.51 4.58
5666 6245 5.909621 ATACTAGTGGTAACTCTTTGCGA 57.090 39.130 5.39 0.00 41.51 5.10
5667 6246 7.220300 CAGTAATACTAGTGGTAACTCTTTGCG 59.780 40.741 5.39 0.00 41.51 4.85
5668 6247 8.033626 ACAGTAATACTAGTGGTAACTCTTTGC 58.966 37.037 5.39 0.00 41.51 3.68
5671 6250 9.972106 AGTACAGTAATACTAGTGGTAACTCTT 57.028 33.333 5.39 0.00 41.51 2.85
5715 6297 5.451242 GCACAGTGATGGTAAAACTTTTGGA 60.451 40.000 4.15 0.00 0.00 3.53
5738 6320 1.468736 GCATAAACAAGGAGCTGCAGC 60.469 52.381 31.53 31.53 42.49 5.25
5754 6336 7.266922 AGTAAAACTTGAACTTTTCGGCATA 57.733 32.000 0.00 0.00 0.00 3.14
5769 6351 7.823149 CTGCGGTACAGTAATAGTAAAACTT 57.177 36.000 0.00 0.00 41.86 2.66
5842 6424 6.591834 AGCATATCATCGAAAGGCTAACATAC 59.408 38.462 0.00 0.00 0.00 2.39
5866 6450 1.593006 CTAACGCAGCGGGTTTCATAG 59.407 52.381 21.15 5.88 39.36 2.23
5887 6475 6.811253 ATAACCGCACATCAAAAGACTAAA 57.189 33.333 0.00 0.00 0.00 1.85
6046 6635 2.044806 CTACCGCTGCTAGCCCCAAT 62.045 60.000 13.29 0.00 38.18 3.16
6047 6636 2.685743 TACCGCTGCTAGCCCCAA 60.686 61.111 13.29 0.00 38.18 4.12
6094 6687 2.287308 TGTGGCATTTGTTTAGTGCGTC 60.287 45.455 0.00 0.00 39.69 5.19
6189 6793 9.262358 GCATGGGCTTAATATAATACTACTAGC 57.738 37.037 0.00 0.00 36.96 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.