Multiple sequence alignment - TraesCS3B01G395300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G395300 chr3B 100.000 9418 0 0 1 9418 622778781 622769364 0.000000e+00 17392.0
1 TraesCS3B01G395300 chr3B 94.680 2237 98 13 5722 7953 279642643 279644863 0.000000e+00 3452.0
2 TraesCS3B01G395300 chr3B 93.489 1459 73 11 4210 5658 279641196 279642642 0.000000e+00 2148.0
3 TraesCS3B01G395300 chr3B 83.025 972 133 20 4254 5202 672736145 672737107 0.000000e+00 852.0
4 TraesCS3B01G395300 chr3B 99.686 318 1 0 4209 4526 622771145 622770828 4.900000e-162 582.0
5 TraesCS3B01G395300 chr3B 99.686 318 1 0 7637 7954 622774573 622774256 4.900000e-162 582.0
6 TraesCS3B01G395300 chr3B 83.534 249 31 3 5171 5411 525629103 525629349 3.420000e-54 224.0
7 TraesCS3B01G395300 chr3B 77.419 155 33 2 4498 4651 525628637 525628790 3.620000e-14 91.6
8 TraesCS3B01G395300 chr5B 98.960 3749 32 2 4210 7952 403745673 403749420 0.000000e+00 6700.0
9 TraesCS3B01G395300 chr5B 98.738 317 4 0 7638 7954 403745673 403745989 1.780000e-156 564.0
10 TraesCS3B01G395300 chr5B 87.640 178 20 2 5227 5403 7050727 7050903 1.240000e-48 206.0
11 TraesCS3B01G395300 chr5B 95.349 129 5 1 459 586 684770831 684770703 4.460000e-48 204.0
12 TraesCS3B01G395300 chr6B 94.989 2235 93 11 5722 7952 625291646 625289427 0.000000e+00 3489.0
13 TraesCS3B01G395300 chr6B 93.283 1459 70 11 4210 5658 625293087 625291647 0.000000e+00 2126.0
14 TraesCS3B01G395300 chr6B 85.120 1539 199 28 6427 7952 143470530 143472051 0.000000e+00 1546.0
15 TraesCS3B01G395300 chr6B 82.449 1527 250 14 6110 7627 214886032 214887549 0.000000e+00 1319.0
16 TraesCS3B01G395300 chr3A 94.425 2009 56 17 741 2696 611205159 611203154 0.000000e+00 3038.0
17 TraesCS3B01G395300 chr3A 97.175 1522 41 1 2690 4209 611203083 611201562 0.000000e+00 2571.0
18 TraesCS3B01G395300 chr3A 95.291 1444 47 12 7984 9418 611200724 611199293 0.000000e+00 2270.0
19 TraesCS3B01G395300 chr3A 76.446 484 102 9 4418 4893 20306390 20306869 1.570000e-62 252.0
20 TraesCS3B01G395300 chr3A 92.073 164 10 3 456 617 719597950 719598112 2.650000e-55 228.0
21 TraesCS3B01G395300 chr3A 97.619 42 0 1 7953 7994 611201566 611201526 4.720000e-08 71.3
22 TraesCS3B01G395300 chr1B 94.202 1949 93 12 6009 7953 421536442 421534510 0.000000e+00 2955.0
23 TraesCS3B01G395300 chr1B 93.694 1459 71 10 4210 5658 421537895 421536448 0.000000e+00 2165.0
24 TraesCS3B01G395300 chr1B 86.008 243 32 2 5417 5659 449257090 449257330 9.380000e-65 259.0
25 TraesCS3B01G395300 chr3D 93.648 2015 56 13 722 2696 468979905 468977923 0.000000e+00 2946.0
26 TraesCS3B01G395300 chr3D 95.225 1445 59 8 7953 9389 468976220 468974778 0.000000e+00 2278.0
27 TraesCS3B01G395300 chr3D 96.746 799 23 1 2690 3488 468977855 468977060 0.000000e+00 1328.0
28 TraesCS3B01G395300 chr3D 94.467 723 20 2 3487 4209 468976918 468976216 0.000000e+00 1096.0
29 TraesCS3B01G395300 chr3D 82.828 297 40 6 4877 5170 335658220 335657932 1.210000e-63 255.0
30 TraesCS3B01G395300 chr3D 85.366 246 34 2 5417 5662 299095405 299095162 4.370000e-63 254.0
31 TraesCS3B01G395300 chr3D 81.818 297 42 6 4877 5170 335661877 335661590 1.220000e-58 239.0
32 TraesCS3B01G395300 chr3D 88.649 185 21 0 5227 5411 555442461 555442277 9.520000e-55 226.0
33 TraesCS3B01G395300 chr3D 87.978 183 22 0 5229 5411 555430183 555430001 5.730000e-52 217.0
34 TraesCS3B01G395300 chr7B 97.408 1582 12 3 4210 5785 3854035 3855593 0.000000e+00 2667.0
35 TraesCS3B01G395300 chr7B 98.423 951 14 1 7003 7953 3855694 3856643 0.000000e+00 1672.0
36 TraesCS3B01G395300 chr7B 99.054 317 3 0 4209 4525 3856327 3856643 3.820000e-158 569.0
37 TraesCS3B01G395300 chr7B 98.738 317 4 0 7638 7954 3854035 3854351 1.780000e-156 564.0
38 TraesCS3B01G395300 chr7B 94.304 158 8 1 460 616 80518111 80517954 3.400000e-59 241.0
39 TraesCS3B01G395300 chrUn 99.449 1270 7 0 5732 7001 417864695 417863426 0.000000e+00 2307.0
40 TraesCS3B01G395300 chr2A 79.835 1696 320 22 5940 7626 182301848 182300166 0.000000e+00 1218.0
41 TraesCS3B01G395300 chr4B 81.081 1332 237 14 6301 7626 14542605 14541283 0.000000e+00 1050.0
42 TraesCS3B01G395300 chr4D 85.199 831 111 10 4210 5034 44621934 44622758 0.000000e+00 843.0
43 TraesCS3B01G395300 chr4D 87.616 323 32 6 7638 7954 44621934 44622254 1.490000e-97 368.0
44 TraesCS3B01G395300 chr2B 96.933 163 4 1 455 616 46809617 46809779 1.210000e-68 272.0
45 TraesCS3B01G395300 chr2B 96.875 160 4 1 459 617 272676858 272677017 5.610000e-67 267.0
46 TraesCS3B01G395300 chr2B 96.732 153 4 1 463 614 798954282 798954130 4.370000e-63 254.0
47 TraesCS3B01G395300 chr2B 94.969 159 7 1 459 616 28263978 28264136 2.030000e-61 248.0
48 TraesCS3B01G395300 chr2D 96.273 161 5 1 459 618 58202360 58202200 7.250000e-66 263.0
49 TraesCS3B01G395300 chr6D 85.425 247 34 2 5417 5663 143480198 143480442 1.210000e-63 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G395300 chr3B 622769364 622778781 9417 True 17392.000 17392 100.00000 1 9418 1 chr3B.!!$R1 9417
1 TraesCS3B01G395300 chr3B 279641196 279644863 3667 False 2800.000 3452 94.08450 4210 7953 2 chr3B.!!$F2 3743
2 TraesCS3B01G395300 chr3B 672736145 672737107 962 False 852.000 852 83.02500 4254 5202 1 chr3B.!!$F1 948
3 TraesCS3B01G395300 chr3B 622770828 622774573 3745 True 582.000 582 99.68600 4209 7954 2 chr3B.!!$R2 3745
4 TraesCS3B01G395300 chr5B 403745673 403749420 3747 False 3632.000 6700 98.84900 4210 7954 2 chr5B.!!$F2 3744
5 TraesCS3B01G395300 chr6B 625289427 625293087 3660 True 2807.500 3489 94.13600 4210 7952 2 chr6B.!!$R1 3742
6 TraesCS3B01G395300 chr6B 143470530 143472051 1521 False 1546.000 1546 85.12000 6427 7952 1 chr6B.!!$F1 1525
7 TraesCS3B01G395300 chr6B 214886032 214887549 1517 False 1319.000 1319 82.44900 6110 7627 1 chr6B.!!$F2 1517
8 TraesCS3B01G395300 chr3A 611199293 611205159 5866 True 1987.575 3038 96.12750 741 9418 4 chr3A.!!$R1 8677
9 TraesCS3B01G395300 chr1B 421534510 421537895 3385 True 2560.000 2955 93.94800 4210 7953 2 chr1B.!!$R1 3743
10 TraesCS3B01G395300 chr3D 468974778 468979905 5127 True 1912.000 2946 95.02150 722 9389 4 chr3D.!!$R5 8667
11 TraesCS3B01G395300 chr3D 335657932 335661877 3945 True 247.000 255 82.32300 4877 5170 2 chr3D.!!$R4 293
12 TraesCS3B01G395300 chr7B 3854035 3856643 2608 False 1368.000 2667 98.40575 4209 7954 4 chr7B.!!$F1 3745
13 TraesCS3B01G395300 chrUn 417863426 417864695 1269 True 2307.000 2307 99.44900 5732 7001 1 chrUn.!!$R1 1269
14 TraesCS3B01G395300 chr2A 182300166 182301848 1682 True 1218.000 1218 79.83500 5940 7626 1 chr2A.!!$R1 1686
15 TraesCS3B01G395300 chr4B 14541283 14542605 1322 True 1050.000 1050 81.08100 6301 7626 1 chr4B.!!$R1 1325
16 TraesCS3B01G395300 chr4D 44621934 44622758 824 False 605.500 843 86.40750 4210 7954 2 chr4D.!!$F1 3744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.035439 ACTGTTGTCGCCCCCAATAG 60.035 55.000 0.00 0.0 37.16 1.73 F
1976 1994 0.032130 TCAGTGTCCAGAACGACAGC 59.968 55.000 0.00 0.0 43.26 4.40 F
2066 2107 0.542467 TTGTTGCTCCCATGGCATGT 60.542 50.000 24.80 0.0 39.54 3.21 F
2543 2630 0.613260 AACAAGCCGCACTATCTCCA 59.387 50.000 0.00 0.0 0.00 3.86 F
3868 4180 0.956633 AGGATGTGTTGCTGCACTTG 59.043 50.000 0.00 0.0 39.89 3.16 F
4205 4519 2.008242 TTTGCTGTATGTTTGGGGCT 57.992 45.000 0.00 0.0 0.00 5.19 F
7988 9156 1.692519 AGTTGACAAGCCGGTAGTCTT 59.307 47.619 19.01 5.6 33.56 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 1999 0.043637 TTTACCCCATCCGGTCCTCT 59.956 55.000 0.00 0.0 37.34 3.69 R
3805 4117 0.112218 TGTGCTTTGCCAGGGTACAT 59.888 50.000 0.00 0.0 0.00 2.29 R
3868 4180 2.480419 GAGAGAGAGAGAGAGCATACGC 59.520 54.545 0.00 0.0 38.99 4.42 R
4207 4521 1.116308 TGAGTCTGGGTCGTGACAAA 58.884 50.000 2.00 0.0 35.81 2.83 R
7988 9156 6.216801 ACTAACTGTTTGTACTGTGTGAGA 57.783 37.500 5.84 0.0 36.67 3.27 R
8282 9452 0.390340 CGCTTCTAACTCCAGCAGCA 60.390 55.000 0.00 0.0 34.88 4.41 R
9390 10570 0.179116 CTCTCGCAGCTACAGTGCAT 60.179 55.000 0.00 0.0 41.26 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.175811 GGCGATGTTGTTGACGGC 59.824 61.111 0.00 0.00 42.98 5.68
20 21 2.202171 GCGATGTTGTTGACGGCG 60.202 61.111 4.80 4.80 0.00 6.46
22 23 1.129809 CGATGTTGTTGACGGCGAC 59.870 57.895 16.62 8.59 31.58 5.19
23 24 1.495951 GATGTTGTTGACGGCGACC 59.504 57.895 16.62 5.38 0.00 4.79
24 25 1.225376 GATGTTGTTGACGGCGACCA 61.225 55.000 16.62 8.43 0.00 4.02
25 26 1.227999 ATGTTGTTGACGGCGACCAG 61.228 55.000 16.62 0.00 0.00 4.00
26 27 1.593209 GTTGTTGACGGCGACCAGA 60.593 57.895 16.62 0.00 0.00 3.86
27 28 1.300620 TTGTTGACGGCGACCAGAG 60.301 57.895 16.62 0.00 0.00 3.35
28 29 2.023414 TTGTTGACGGCGACCAGAGT 62.023 55.000 16.62 0.00 0.00 3.24
29 30 1.174078 TGTTGACGGCGACCAGAGTA 61.174 55.000 16.62 0.00 0.00 2.59
32 33 0.963856 TGACGGCGACCAGAGTACAT 60.964 55.000 16.62 0.00 0.00 2.29
34 35 1.248785 ACGGCGACCAGAGTACATGT 61.249 55.000 16.62 2.69 0.00 3.21
35 36 0.802222 CGGCGACCAGAGTACATGTG 60.802 60.000 9.11 0.00 0.00 3.21
36 37 1.084370 GGCGACCAGAGTACATGTGC 61.084 60.000 9.11 7.34 0.00 4.57
37 38 1.413767 GCGACCAGAGTACATGTGCG 61.414 60.000 9.11 0.00 0.00 5.34
39 40 1.202302 CGACCAGAGTACATGTGCGAT 60.202 52.381 9.11 0.00 0.00 4.58
41 42 1.824852 ACCAGAGTACATGTGCGATGA 59.175 47.619 18.25 0.00 0.00 2.92
42 43 2.159184 ACCAGAGTACATGTGCGATGAG 60.159 50.000 18.25 12.46 0.00 2.90
44 45 2.099756 CAGAGTACATGTGCGATGAGGA 59.900 50.000 9.11 0.00 0.00 3.71
45 46 2.760650 AGAGTACATGTGCGATGAGGAA 59.239 45.455 9.11 0.00 0.00 3.36
46 47 2.860735 GAGTACATGTGCGATGAGGAAC 59.139 50.000 9.11 0.00 0.00 3.62
48 49 0.740868 ACATGTGCGATGAGGAACGG 60.741 55.000 0.00 0.00 0.00 4.44
49 50 1.153369 ATGTGCGATGAGGAACGGG 60.153 57.895 0.00 0.00 0.00 5.28
50 51 3.195698 GTGCGATGAGGAACGGGC 61.196 66.667 0.00 0.00 0.00 6.13
54 55 4.508128 GATGAGGAACGGGCGCGA 62.508 66.667 30.98 6.28 0.00 5.87
74 75 3.460648 GCGAAAGGCTCACCATAGT 57.539 52.632 0.00 0.00 39.06 2.12
76 77 1.941325 CGAAAGGCTCACCATAGTCC 58.059 55.000 0.00 0.00 39.06 3.85
79 80 1.568504 AAGGCTCACCATAGTCCGAA 58.431 50.000 0.00 0.00 39.06 4.30
80 81 1.115467 AGGCTCACCATAGTCCGAAG 58.885 55.000 0.00 0.00 39.06 3.79
82 83 3.243966 GGCTCACCATAGTCCGAAGGG 62.244 61.905 0.00 0.00 42.67 3.95
93 94 4.350620 CGAAGGGATGATGCCGAG 57.649 61.111 0.00 0.00 30.73 4.63
94 95 1.958205 CGAAGGGATGATGCCGAGC 60.958 63.158 0.00 0.00 30.73 5.03
96 97 3.466791 AAGGGATGATGCCGAGCGG 62.467 63.158 4.20 4.20 38.57 5.52
97 98 4.996434 GGGATGATGCCGAGCGGG 62.996 72.222 11.30 0.00 39.58 6.13
108 109 2.429907 GAGCGGGCGATCGAGATG 60.430 66.667 21.57 6.00 0.00 2.90
109 110 2.907407 AGCGGGCGATCGAGATGA 60.907 61.111 21.57 0.00 0.00 2.92
110 111 2.429907 GCGGGCGATCGAGATGAG 60.430 66.667 21.57 4.25 0.00 2.90
111 112 2.429907 CGGGCGATCGAGATGAGC 60.430 66.667 21.57 0.00 0.00 4.26
117 118 1.583986 GATCGAGATGAGCGGGAGG 59.416 63.158 0.00 0.00 0.00 4.30
118 119 0.891449 GATCGAGATGAGCGGGAGGA 60.891 60.000 0.00 0.00 0.00 3.71
119 120 0.893270 ATCGAGATGAGCGGGAGGAG 60.893 60.000 0.00 0.00 0.00 3.69
120 121 2.560119 CGAGATGAGCGGGAGGAGG 61.560 68.421 0.00 0.00 0.00 4.30
121 122 1.456705 GAGATGAGCGGGAGGAGGT 60.457 63.158 0.00 0.00 0.00 3.85
122 123 1.743321 GAGATGAGCGGGAGGAGGTG 61.743 65.000 0.00 0.00 0.00 4.00
123 124 2.765807 ATGAGCGGGAGGAGGTGG 60.766 66.667 0.00 0.00 0.00 4.61
129 130 2.367512 GGGAGGAGGTGGCTCCAT 60.368 66.667 8.51 0.00 45.66 3.41
130 131 2.750657 GGGAGGAGGTGGCTCCATG 61.751 68.421 8.51 0.00 45.66 3.66
131 132 2.191641 GAGGAGGTGGCTCCATGC 59.808 66.667 8.51 0.00 45.66 4.06
144 145 3.554692 CATGCCGCCGACGAACTC 61.555 66.667 0.00 0.00 43.93 3.01
145 146 4.814294 ATGCCGCCGACGAACTCC 62.814 66.667 0.00 0.00 43.93 3.85
178 179 4.528674 ATGGCTCACGTCATCAGC 57.471 55.556 0.00 0.00 26.36 4.26
181 182 4.284123 GCTCACGTCATCAGCCAA 57.716 55.556 0.00 0.00 0.00 4.52
183 184 0.654683 GCTCACGTCATCAGCCAATC 59.345 55.000 0.00 0.00 0.00 2.67
184 185 0.926155 CTCACGTCATCAGCCAATCG 59.074 55.000 0.00 0.00 0.00 3.34
187 188 1.815003 CGTCATCAGCCAATCGCCA 60.815 57.895 0.00 0.00 38.78 5.69
188 189 1.723870 GTCATCAGCCAATCGCCAC 59.276 57.895 0.00 0.00 38.78 5.01
189 190 0.745845 GTCATCAGCCAATCGCCACT 60.746 55.000 0.00 0.00 38.78 4.00
190 191 0.745486 TCATCAGCCAATCGCCACTG 60.745 55.000 0.00 0.00 38.78 3.66
191 192 1.028330 CATCAGCCAATCGCCACTGT 61.028 55.000 0.00 0.00 38.78 3.55
193 194 1.210931 CAGCCAATCGCCACTGTTG 59.789 57.895 0.00 0.00 38.78 3.33
194 195 1.228245 AGCCAATCGCCACTGTTGT 60.228 52.632 0.00 0.00 38.78 3.32
195 196 1.210155 GCCAATCGCCACTGTTGTC 59.790 57.895 0.00 0.00 0.00 3.18
196 197 1.497278 CCAATCGCCACTGTTGTCG 59.503 57.895 0.00 0.00 0.00 4.35
197 198 1.154413 CAATCGCCACTGTTGTCGC 60.154 57.895 0.00 0.00 0.00 5.19
198 199 2.325082 AATCGCCACTGTTGTCGCC 61.325 57.895 0.00 0.00 0.00 5.54
199 200 4.980805 TCGCCACTGTTGTCGCCC 62.981 66.667 0.00 0.00 0.00 6.13
203 204 2.203280 CACTGTTGTCGCCCCCAA 60.203 61.111 0.00 0.00 0.00 4.12
204 205 1.603455 CACTGTTGTCGCCCCCAAT 60.603 57.895 0.00 0.00 0.00 3.16
206 207 0.035439 ACTGTTGTCGCCCCCAATAG 60.035 55.000 0.00 0.00 37.16 1.73
207 208 0.748005 CTGTTGTCGCCCCCAATAGG 60.748 60.000 0.00 0.00 30.17 2.57
210 211 1.202099 TTGTCGCCCCCAATAGGACA 61.202 55.000 0.00 0.00 38.24 4.02
211 212 1.146263 GTCGCCCCCAATAGGACAG 59.854 63.158 0.00 0.00 38.24 3.51
213 214 0.619255 TCGCCCCCAATAGGACAGAA 60.619 55.000 0.00 0.00 38.24 3.02
214 215 0.463833 CGCCCCCAATAGGACAGAAC 60.464 60.000 0.00 0.00 38.24 3.01
215 216 0.106669 GCCCCCAATAGGACAGAACC 60.107 60.000 0.00 0.00 38.24 3.62
216 217 1.596496 CCCCCAATAGGACAGAACCT 58.404 55.000 0.00 0.00 43.32 3.50
217 218 2.771688 CCCCCAATAGGACAGAACCTA 58.228 52.381 0.00 0.00 45.05 3.08
218 219 2.438392 CCCCCAATAGGACAGAACCTAC 59.562 54.545 0.00 0.00 43.99 3.18
219 220 2.438392 CCCCAATAGGACAGAACCTACC 59.562 54.545 0.00 0.00 43.99 3.18
220 221 3.385115 CCCAATAGGACAGAACCTACCT 58.615 50.000 0.00 0.00 43.99 3.08
221 222 3.134804 CCCAATAGGACAGAACCTACCTG 59.865 52.174 0.00 0.00 43.99 4.00
222 223 3.134804 CCAATAGGACAGAACCTACCTGG 59.865 52.174 0.00 0.00 43.99 4.45
231 232 2.417516 CCTACCTGGTCGGCATCG 59.582 66.667 0.63 0.00 35.61 3.84
240 241 3.521605 TCGGCATCGAACGGATCT 58.478 55.556 7.51 0.00 43.03 2.75
241 242 1.359117 TCGGCATCGAACGGATCTC 59.641 57.895 7.51 0.00 43.03 2.75
243 244 0.527600 CGGCATCGAACGGATCTCAA 60.528 55.000 0.00 0.00 39.00 3.02
245 246 1.640428 GCATCGAACGGATCTCAACA 58.360 50.000 0.00 0.00 31.28 3.33
246 247 1.590238 GCATCGAACGGATCTCAACAG 59.410 52.381 0.00 0.00 31.28 3.16
247 248 2.196749 CATCGAACGGATCTCAACAGG 58.803 52.381 0.00 0.00 31.28 4.00
249 250 1.472878 TCGAACGGATCTCAACAGGAG 59.527 52.381 0.00 0.00 45.49 3.69
251 252 2.732597 CGAACGGATCTCAACAGGAGTC 60.733 54.545 0.00 0.00 44.40 3.36
252 253 1.187087 ACGGATCTCAACAGGAGTCC 58.813 55.000 0.00 0.00 44.40 3.85
253 254 1.186200 CGGATCTCAACAGGAGTCCA 58.814 55.000 12.86 0.00 44.40 4.02
254 255 1.135915 CGGATCTCAACAGGAGTCCAG 59.864 57.143 12.86 5.88 44.40 3.86
255 256 2.183679 GGATCTCAACAGGAGTCCAGT 58.816 52.381 12.86 6.68 44.40 4.00
257 258 2.381752 TCTCAACAGGAGTCCAGTGA 57.618 50.000 12.86 10.29 44.40 3.41
258 259 2.677914 TCTCAACAGGAGTCCAGTGAA 58.322 47.619 12.86 0.58 44.40 3.18
259 260 3.242867 TCTCAACAGGAGTCCAGTGAAT 58.757 45.455 12.86 0.00 44.40 2.57
260 261 3.648067 TCTCAACAGGAGTCCAGTGAATT 59.352 43.478 12.86 0.00 44.40 2.17
261 262 4.103153 TCTCAACAGGAGTCCAGTGAATTT 59.897 41.667 12.86 0.00 44.40 1.82
264 265 6.542821 TCAACAGGAGTCCAGTGAATTTAAT 58.457 36.000 12.86 0.00 0.00 1.40
265 266 7.004086 TCAACAGGAGTCCAGTGAATTTAATT 58.996 34.615 12.86 0.00 0.00 1.40
266 267 7.174946 TCAACAGGAGTCCAGTGAATTTAATTC 59.825 37.037 12.86 10.47 39.70 2.17
280 281 5.904362 ATTTAATTCAGGTGGAGAAGTGC 57.096 39.130 0.00 0.00 0.00 4.40
281 282 1.813513 AATTCAGGTGGAGAAGTGCG 58.186 50.000 0.00 0.00 0.00 5.34
282 283 0.036010 ATTCAGGTGGAGAAGTGCGG 60.036 55.000 0.00 0.00 0.00 5.69
285 286 2.147387 AGGTGGAGAAGTGCGGGTT 61.147 57.895 0.00 0.00 0.00 4.11
289 290 0.400213 TGGAGAAGTGCGGGTTGATT 59.600 50.000 0.00 0.00 0.00 2.57
290 291 1.087501 GGAGAAGTGCGGGTTGATTC 58.912 55.000 0.00 0.00 0.00 2.52
291 292 1.087501 GAGAAGTGCGGGTTGATTCC 58.912 55.000 0.00 0.00 0.00 3.01
292 293 0.400213 AGAAGTGCGGGTTGATTCCA 59.600 50.000 0.00 0.00 0.00 3.53
293 294 0.804989 GAAGTGCGGGTTGATTCCAG 59.195 55.000 0.00 0.00 0.00 3.86
294 295 0.400213 AAGTGCGGGTTGATTCCAGA 59.600 50.000 0.00 0.00 0.00 3.86
295 296 0.036010 AGTGCGGGTTGATTCCAGAG 60.036 55.000 0.00 0.00 0.00 3.35
297 298 0.690192 TGCGGGTTGATTCCAGAGAA 59.310 50.000 0.00 0.00 36.15 2.87
299 300 2.290896 TGCGGGTTGATTCCAGAGAAAT 60.291 45.455 0.00 0.00 35.09 2.17
301 302 2.098117 CGGGTTGATTCCAGAGAAATGC 59.902 50.000 0.00 0.00 35.09 3.56
302 303 3.091545 GGGTTGATTCCAGAGAAATGCA 58.908 45.455 0.00 0.00 35.09 3.96
303 304 3.703052 GGGTTGATTCCAGAGAAATGCAT 59.297 43.478 0.00 0.00 35.09 3.96
304 305 4.441079 GGGTTGATTCCAGAGAAATGCATG 60.441 45.833 0.00 0.00 35.09 4.06
305 306 4.441079 GGTTGATTCCAGAGAAATGCATGG 60.441 45.833 0.00 0.00 35.09 3.66
306 307 3.293337 TGATTCCAGAGAAATGCATGGG 58.707 45.455 0.00 0.00 35.09 4.00
307 308 2.148446 TTCCAGAGAAATGCATGGGG 57.852 50.000 0.00 0.00 33.45 4.96
308 309 0.396139 TCCAGAGAAATGCATGGGGC 60.396 55.000 0.00 0.00 45.13 5.80
310 311 1.481871 CAGAGAAATGCATGGGGCTT 58.518 50.000 0.00 0.00 45.15 4.35
311 312 1.829222 CAGAGAAATGCATGGGGCTTT 59.171 47.619 0.00 0.00 45.15 3.51
313 314 1.551883 GAGAAATGCATGGGGCTTTGT 59.448 47.619 0.00 0.00 45.15 2.83
314 315 1.276989 AGAAATGCATGGGGCTTTGTG 59.723 47.619 0.00 0.00 45.15 3.33
316 317 1.350071 AATGCATGGGGCTTTGTGAA 58.650 45.000 0.00 0.00 45.15 3.18
317 318 1.350071 ATGCATGGGGCTTTGTGAAA 58.650 45.000 0.00 0.00 45.15 2.69
318 319 1.126488 TGCATGGGGCTTTGTGAAAA 58.874 45.000 0.00 0.00 45.15 2.29
320 321 2.145536 GCATGGGGCTTTGTGAAAAAG 58.854 47.619 0.00 0.00 40.25 2.27
322 323 3.244044 GCATGGGGCTTTGTGAAAAAGTA 60.244 43.478 0.00 0.00 40.25 2.24
323 324 4.563374 GCATGGGGCTTTGTGAAAAAGTAT 60.563 41.667 0.00 0.00 40.25 2.12
325 326 4.219115 TGGGGCTTTGTGAAAAAGTATCA 58.781 39.130 0.00 0.00 0.00 2.15
326 327 4.651503 TGGGGCTTTGTGAAAAAGTATCAA 59.348 37.500 0.00 0.00 0.00 2.57
327 328 5.221422 TGGGGCTTTGTGAAAAAGTATCAAG 60.221 40.000 0.00 0.00 0.00 3.02
328 329 4.686091 GGGCTTTGTGAAAAAGTATCAAGC 59.314 41.667 0.00 0.00 0.00 4.01
330 331 5.212194 GCTTTGTGAAAAAGTATCAAGCGA 58.788 37.500 0.00 0.00 0.00 4.93
331 332 5.858581 GCTTTGTGAAAAAGTATCAAGCGAT 59.141 36.000 0.00 0.00 35.50 4.58
332 333 6.183359 GCTTTGTGAAAAAGTATCAAGCGATG 60.183 38.462 0.00 0.00 32.73 3.84
333 334 6.552859 TTGTGAAAAAGTATCAAGCGATGA 57.447 33.333 0.00 0.00 43.67 2.92
335 336 6.775088 TGTGAAAAAGTATCAAGCGATGATC 58.225 36.000 10.75 4.73 45.91 2.92
337 338 5.810074 TGAAAAAGTATCAAGCGATGATCGA 59.190 36.000 20.25 0.00 45.91 3.59
338 339 6.479990 TGAAAAAGTATCAAGCGATGATCGAT 59.520 34.615 20.25 10.00 45.91 3.59
339 340 6.459257 AAAAGTATCAAGCGATGATCGATC 57.541 37.500 20.25 18.72 45.91 3.69
340 341 4.103365 AGTATCAAGCGATGATCGATCC 57.897 45.455 20.25 7.25 45.91 3.36
341 342 1.988063 ATCAAGCGATGATCGATCCG 58.012 50.000 20.25 19.18 45.91 4.18
342 343 0.664466 TCAAGCGATGATCGATCCGC 60.664 55.000 29.81 29.81 43.74 5.54
343 344 1.373497 AAGCGATGATCGATCCGCC 60.373 57.895 31.78 20.21 43.74 6.13
344 345 2.771763 AAGCGATGATCGATCCGCCC 62.772 60.000 31.78 16.43 43.74 6.13
346 347 2.266055 GATGATCGATCCGCCCCC 59.734 66.667 22.31 0.00 0.00 5.40
347 348 3.649277 GATGATCGATCCGCCCCCG 62.649 68.421 22.31 0.00 0.00 5.73
361 362 4.394712 CCCGGAGTGCCACCTGTC 62.395 72.222 0.73 0.00 0.00 3.51
362 363 4.742201 CCGGAGTGCCACCTGTCG 62.742 72.222 0.00 0.00 0.00 4.35
381 382 4.704833 GCTGCGGTTGGCTCTGGA 62.705 66.667 0.00 0.00 44.05 3.86
382 383 2.743928 CTGCGGTTGGCTCTGGAC 60.744 66.667 0.00 0.00 44.05 4.02
383 384 3.241530 TGCGGTTGGCTCTGGACT 61.242 61.111 0.00 0.00 44.05 3.85
384 385 1.888436 CTGCGGTTGGCTCTGGACTA 61.888 60.000 0.00 0.00 44.05 2.59
385 386 1.295423 GCGGTTGGCTCTGGACTAA 59.705 57.895 0.00 0.00 39.11 2.24
386 387 0.321298 GCGGTTGGCTCTGGACTAAA 60.321 55.000 0.00 0.00 39.11 1.85
387 388 1.880646 GCGGTTGGCTCTGGACTAAAA 60.881 52.381 0.00 0.00 39.11 1.52
388 389 1.804748 CGGTTGGCTCTGGACTAAAAC 59.195 52.381 0.00 0.00 0.00 2.43
390 391 3.421844 GGTTGGCTCTGGACTAAAACAT 58.578 45.455 0.00 0.00 0.00 2.71
391 392 3.440522 GGTTGGCTCTGGACTAAAACATC 59.559 47.826 0.00 0.00 0.00 3.06
392 393 4.072131 GTTGGCTCTGGACTAAAACATCA 58.928 43.478 0.00 0.00 0.00 3.07
393 394 3.674997 TGGCTCTGGACTAAAACATCAC 58.325 45.455 0.00 0.00 0.00 3.06
395 396 4.263462 TGGCTCTGGACTAAAACATCACAT 60.263 41.667 0.00 0.00 0.00 3.21
396 397 5.045942 TGGCTCTGGACTAAAACATCACATA 60.046 40.000 0.00 0.00 0.00 2.29
397 398 5.525378 GGCTCTGGACTAAAACATCACATAG 59.475 44.000 0.00 0.00 0.00 2.23
400 401 7.482169 TCTGGACTAAAACATCACATAGAGT 57.518 36.000 0.00 0.00 0.00 3.24
411 412 3.818961 CACATAGAGTGCAAGTTGTGG 57.181 47.619 4.48 0.00 42.15 4.17
412 413 2.485426 CACATAGAGTGCAAGTTGTGGG 59.515 50.000 4.48 0.00 42.15 4.61
415 416 0.109342 AGAGTGCAAGTTGTGGGAGG 59.891 55.000 4.48 0.00 0.00 4.30
417 418 2.203480 TGCAAGTTGTGGGAGGGC 60.203 61.111 4.48 0.00 0.00 5.19
419 420 1.973812 GCAAGTTGTGGGAGGGCTC 60.974 63.158 4.48 0.00 0.00 4.70
421 422 0.607489 CAAGTTGTGGGAGGGCTCAG 60.607 60.000 0.00 0.00 0.00 3.35
422 423 1.062488 AAGTTGTGGGAGGGCTCAGT 61.062 55.000 0.00 0.00 0.00 3.41
423 424 1.062488 AGTTGTGGGAGGGCTCAGTT 61.062 55.000 0.00 0.00 0.00 3.16
424 425 0.606673 GTTGTGGGAGGGCTCAGTTC 60.607 60.000 0.00 0.00 0.00 3.01
425 426 1.059584 TTGTGGGAGGGCTCAGTTCA 61.060 55.000 0.00 0.00 0.00 3.18
428 429 0.768221 TGGGAGGGCTCAGTTCACTT 60.768 55.000 0.00 0.00 0.00 3.16
430 431 1.202940 GGGAGGGCTCAGTTCACTTTT 60.203 52.381 0.00 0.00 0.00 2.27
431 432 1.882623 GGAGGGCTCAGTTCACTTTTG 59.117 52.381 0.00 0.00 0.00 2.44
432 433 1.268079 GAGGGCTCAGTTCACTTTTGC 59.732 52.381 0.00 0.00 0.00 3.68
433 434 0.040067 GGGCTCAGTTCACTTTTGCG 60.040 55.000 0.00 0.00 0.00 4.85
434 435 0.944386 GGCTCAGTTCACTTTTGCGA 59.056 50.000 0.00 0.00 0.00 5.10
436 437 2.030805 GGCTCAGTTCACTTTTGCGAAT 60.031 45.455 0.00 0.00 0.00 3.34
438 439 4.044426 GCTCAGTTCACTTTTGCGAATTT 58.956 39.130 0.00 0.00 0.00 1.82
439 440 4.504097 GCTCAGTTCACTTTTGCGAATTTT 59.496 37.500 0.00 0.00 0.00 1.82
441 442 6.129352 GCTCAGTTCACTTTTGCGAATTTTAG 60.129 38.462 0.00 0.00 0.00 1.85
442 443 7.022055 TCAGTTCACTTTTGCGAATTTTAGA 57.978 32.000 0.00 0.00 0.00 2.10
443 444 7.132213 TCAGTTCACTTTTGCGAATTTTAGAG 58.868 34.615 0.00 0.00 0.00 2.43
444 445 5.915196 AGTTCACTTTTGCGAATTTTAGAGC 59.085 36.000 0.00 0.00 0.00 4.09
445 446 5.431420 TCACTTTTGCGAATTTTAGAGCA 57.569 34.783 0.00 0.00 37.89 4.26
446 447 5.826586 TCACTTTTGCGAATTTTAGAGCAA 58.173 33.333 0.00 0.00 46.22 3.91
455 456 5.629020 GCGAATTTTAGAGCAAAACATCACA 59.371 36.000 0.00 0.00 38.90 3.58
456 457 6.308766 GCGAATTTTAGAGCAAAACATCACAT 59.691 34.615 0.00 0.00 38.90 3.21
457 458 7.148755 GCGAATTTTAGAGCAAAACATCACATT 60.149 33.333 0.00 0.00 38.90 2.71
460 461 8.752766 ATTTTAGAGCAAAACATCACATTCAG 57.247 30.769 0.00 0.00 38.90 3.02
461 462 6.882610 TTAGAGCAAAACATCACATTCAGT 57.117 33.333 0.00 0.00 0.00 3.41
462 463 7.648908 TTTTAGAGCAAAACATCACATTCAGTG 59.351 33.333 0.00 0.00 39.13 3.66
470 471 2.460330 CACATTCAGTGGCGGAGAC 58.540 57.895 0.00 0.00 44.69 3.36
480 481 4.445699 GCGGAGACAAGCCTATGG 57.554 61.111 0.00 0.00 0.00 2.74
491 492 3.010144 CCTATGGCAGTTGGGGCT 58.990 61.111 0.00 0.00 0.00 5.19
492 493 2.230664 CCTATGGCAGTTGGGGCTA 58.769 57.895 0.00 0.00 0.00 3.93
493 494 0.773644 CCTATGGCAGTTGGGGCTAT 59.226 55.000 0.00 0.00 36.39 2.97
494 495 1.985159 CCTATGGCAGTTGGGGCTATA 59.015 52.381 0.00 0.00 34.17 1.31
495 496 2.026822 CCTATGGCAGTTGGGGCTATAG 60.027 54.545 9.85 9.85 46.37 1.31
518 519 4.874396 GCCCTAAGCGTAATACCAATATCC 59.126 45.833 0.00 0.00 0.00 2.59
519 520 5.338137 GCCCTAAGCGTAATACCAATATCCT 60.338 44.000 0.00 0.00 0.00 3.24
520 521 6.708285 CCCTAAGCGTAATACCAATATCCTT 58.292 40.000 0.00 0.00 0.00 3.36
521 522 7.166167 CCCTAAGCGTAATACCAATATCCTTT 58.834 38.462 0.00 0.00 0.00 3.11
522 523 7.119262 CCCTAAGCGTAATACCAATATCCTTTG 59.881 40.741 0.00 0.00 0.00 2.77
523 524 7.660208 CCTAAGCGTAATACCAATATCCTTTGT 59.340 37.037 0.00 0.00 0.00 2.83
524 525 9.701098 CTAAGCGTAATACCAATATCCTTTGTA 57.299 33.333 0.00 0.00 0.00 2.41
525 526 8.967664 AAGCGTAATACCAATATCCTTTGTAA 57.032 30.769 0.00 0.00 0.00 2.41
526 527 9.569122 AAGCGTAATACCAATATCCTTTGTAAT 57.431 29.630 0.00 0.00 0.00 1.89
528 529 9.821662 GCGTAATACCAATATCCTTTGTAATTC 57.178 33.333 0.00 0.00 0.00 2.17
541 542 8.698973 TCCTTTGTAATTCCTTTTCATACACA 57.301 30.769 0.00 0.00 0.00 3.72
542 543 9.137459 TCCTTTGTAATTCCTTTTCATACACAA 57.863 29.630 0.00 0.00 0.00 3.33
543 544 9.191995 CCTTTGTAATTCCTTTTCATACACAAC 57.808 33.333 0.00 0.00 0.00 3.32
581 582 5.766150 AGTGTATCACTCAAGCTAGCTAG 57.234 43.478 19.70 16.84 41.21 3.42
583 584 6.953982 AGTGTATCACTCAAGCTAGCTAGCC 61.954 48.000 36.28 21.35 44.91 3.93
600 601 2.086054 GCCCTAGGCGTAATCTCATG 57.914 55.000 2.05 0.00 39.62 3.07
601 602 1.941668 GCCCTAGGCGTAATCTCATGC 60.942 57.143 2.05 0.00 39.62 4.06
602 603 1.620819 CCCTAGGCGTAATCTCATGCT 59.379 52.381 2.05 0.00 0.00 3.79
603 604 2.826128 CCCTAGGCGTAATCTCATGCTA 59.174 50.000 2.05 0.00 0.00 3.49
604 605 3.119316 CCCTAGGCGTAATCTCATGCTAG 60.119 52.174 2.05 0.00 0.00 3.42
605 606 2.447244 AGGCGTAATCTCATGCTAGC 57.553 50.000 8.10 8.10 0.00 3.42
606 607 1.967066 AGGCGTAATCTCATGCTAGCT 59.033 47.619 17.23 0.00 0.00 3.32
607 608 2.366916 AGGCGTAATCTCATGCTAGCTT 59.633 45.455 17.23 6.81 0.00 3.74
608 609 2.734079 GGCGTAATCTCATGCTAGCTTC 59.266 50.000 17.23 0.00 0.00 3.86
611 612 1.876322 AATCTCATGCTAGCTTCGCC 58.124 50.000 17.23 0.00 0.00 5.54
612 613 0.755079 ATCTCATGCTAGCTTCGCCA 59.245 50.000 17.23 0.00 0.00 5.69
613 614 0.179100 TCTCATGCTAGCTTCGCCAC 60.179 55.000 17.23 0.00 0.00 5.01
614 615 0.179089 CTCATGCTAGCTTCGCCACT 60.179 55.000 17.23 0.00 0.00 4.00
615 616 0.460811 TCATGCTAGCTTCGCCACTG 60.461 55.000 17.23 0.00 0.00 3.66
617 618 0.467384 ATGCTAGCTTCGCCACTGAT 59.533 50.000 17.23 0.00 0.00 2.90
618 619 0.179100 TGCTAGCTTCGCCACTGATC 60.179 55.000 17.23 0.00 0.00 2.92
619 620 0.179100 GCTAGCTTCGCCACTGATCA 60.179 55.000 7.70 0.00 0.00 2.92
620 621 1.565305 CTAGCTTCGCCACTGATCAC 58.435 55.000 0.00 0.00 0.00 3.06
621 622 0.894835 TAGCTTCGCCACTGATCACA 59.105 50.000 0.00 0.00 0.00 3.58
622 623 0.251354 AGCTTCGCCACTGATCACAT 59.749 50.000 0.00 0.00 0.00 3.21
623 624 1.089920 GCTTCGCCACTGATCACATT 58.910 50.000 0.00 0.00 0.00 2.71
624 625 1.470098 GCTTCGCCACTGATCACATTT 59.530 47.619 0.00 0.00 0.00 2.32
625 626 2.095059 GCTTCGCCACTGATCACATTTT 60.095 45.455 0.00 0.00 0.00 1.82
626 627 3.126858 GCTTCGCCACTGATCACATTTTA 59.873 43.478 0.00 0.00 0.00 1.52
628 629 4.880886 TCGCCACTGATCACATTTTATG 57.119 40.909 0.00 0.00 0.00 1.90
629 630 4.260985 TCGCCACTGATCACATTTTATGT 58.739 39.130 0.00 0.00 46.22 2.29
632 633 6.037062 TCGCCACTGATCACATTTTATGTAAG 59.963 38.462 0.00 0.00 42.70 2.34
633 634 6.183360 CGCCACTGATCACATTTTATGTAAGT 60.183 38.462 0.00 0.00 42.70 2.24
635 636 7.485913 GCCACTGATCACATTTTATGTAAGTTG 59.514 37.037 0.00 0.00 42.70 3.16
636 637 8.514594 CCACTGATCACATTTTATGTAAGTTGT 58.485 33.333 0.00 0.00 42.70 3.32
640 641 9.952030 TGATCACATTTTATGTAAGTTGTAGGA 57.048 29.630 0.00 0.00 42.70 2.94
643 644 9.391006 TCACATTTTATGTAAGTTGTAGGATCC 57.609 33.333 2.48 2.48 42.70 3.36
644 645 8.335356 CACATTTTATGTAAGTTGTAGGATCCG 58.665 37.037 5.98 0.00 42.70 4.18
645 646 7.497909 ACATTTTATGTAAGTTGTAGGATCCGG 59.502 37.037 5.98 0.00 42.78 5.14
646 647 5.540400 TTATGTAAGTTGTAGGATCCGGG 57.460 43.478 5.98 0.00 0.00 5.73
648 649 2.498481 TGTAAGTTGTAGGATCCGGGTG 59.502 50.000 5.98 0.00 0.00 4.61
650 651 0.617820 AGTTGTAGGATCCGGGTGCT 60.618 55.000 15.16 15.16 0.00 4.40
653 654 2.097110 TGTAGGATCCGGGTGCTATT 57.903 50.000 19.79 0.00 0.00 1.73
654 655 3.247948 TGTAGGATCCGGGTGCTATTA 57.752 47.619 19.79 9.03 0.00 0.98
655 656 2.895404 TGTAGGATCCGGGTGCTATTAC 59.105 50.000 19.79 9.97 0.00 1.89
658 659 1.275573 GGATCCGGGTGCTATTACCTC 59.724 57.143 0.00 0.00 40.66 3.85
659 660 1.968493 GATCCGGGTGCTATTACCTCA 59.032 52.381 0.00 0.00 40.66 3.86
660 661 1.868713 TCCGGGTGCTATTACCTCAA 58.131 50.000 0.00 0.00 40.66 3.02
661 662 2.189676 TCCGGGTGCTATTACCTCAAA 58.810 47.619 0.00 0.00 40.66 2.69
663 664 2.169769 CCGGGTGCTATTACCTCAAAGA 59.830 50.000 0.00 0.00 40.66 2.52
664 665 3.458189 CGGGTGCTATTACCTCAAAGAG 58.542 50.000 0.00 0.00 40.66 2.85
665 666 3.118738 CGGGTGCTATTACCTCAAAGAGT 60.119 47.826 0.00 0.00 40.66 3.24
666 667 4.098960 CGGGTGCTATTACCTCAAAGAGTA 59.901 45.833 0.00 0.00 40.66 2.59
667 668 5.221461 CGGGTGCTATTACCTCAAAGAGTAT 60.221 44.000 0.00 0.00 40.66 2.12
668 669 5.992217 GGGTGCTATTACCTCAAAGAGTATG 59.008 44.000 0.00 0.00 40.66 2.39
669 670 5.467063 GGTGCTATTACCTCAAAGAGTATGC 59.533 44.000 0.00 0.00 37.74 3.14
670 671 6.049149 GTGCTATTACCTCAAAGAGTATGCA 58.951 40.000 0.00 0.00 0.00 3.96
671 672 6.018669 GTGCTATTACCTCAAAGAGTATGCAC 60.019 42.308 0.00 0.00 37.86 4.57
673 674 4.530710 TTACCTCAAAGAGTATGCACGT 57.469 40.909 0.00 0.00 0.00 4.49
688 689 3.823716 GCACGTTTGCTTTCTCAAAAG 57.176 42.857 0.00 0.00 46.17 2.27
689 690 3.434637 GCACGTTTGCTTTCTCAAAAGA 58.565 40.909 8.63 0.00 46.17 2.52
692 693 5.340667 GCACGTTTGCTTTCTCAAAAGATAG 59.659 40.000 8.63 0.00 46.17 2.08
700 701 7.384439 GCTTTCTCAAAAGATAGCTAAAGGT 57.616 36.000 0.00 0.00 46.83 3.50
701 702 7.247019 GCTTTCTCAAAAGATAGCTAAAGGTG 58.753 38.462 0.00 0.00 46.83 4.00
702 703 6.743575 TTCTCAAAAGATAGCTAAAGGTGC 57.256 37.500 0.00 0.00 0.00 5.01
703 704 5.804639 TCTCAAAAGATAGCTAAAGGTGCA 58.195 37.500 0.00 0.00 0.00 4.57
705 706 4.700213 TCAAAAGATAGCTAAAGGTGCACC 59.300 41.667 29.22 29.22 0.00 5.01
706 707 4.301072 AAAGATAGCTAAAGGTGCACCA 57.699 40.909 36.39 16.38 38.89 4.17
707 708 3.268023 AGATAGCTAAAGGTGCACCAC 57.732 47.619 36.39 19.62 38.89 4.16
715 716 2.358737 GGTGCACCACCGAGGAAG 60.359 66.667 31.23 0.00 44.95 3.46
717 718 1.668151 GTGCACCACCGAGGAAGAC 60.668 63.158 5.22 0.00 41.22 3.01
719 720 2.432628 CACCACCGAGGAAGACGC 60.433 66.667 0.00 0.00 41.22 5.19
732 733 4.061596 AGGAAGACGCTCTTTCTCAAAAG 58.938 43.478 3.53 0.00 37.82 2.27
786 787 2.278142 GTCCATGGATTTGCGCGC 60.278 61.111 27.26 27.26 0.00 6.86
788 789 4.910722 CCATGGATTTGCGCGCCG 62.911 66.667 30.77 6.27 0.00 6.46
790 791 3.439540 ATGGATTTGCGCGCCGTT 61.440 55.556 30.77 13.04 0.00 4.44
812 813 2.436417 GTATGGCTGGTGCTCTGAAAA 58.564 47.619 0.00 0.00 39.59 2.29
1023 1024 3.896133 GATCCGCCGTCCGTAGCA 61.896 66.667 0.00 0.00 34.38 3.49
1030 1031 2.494445 CGTCCGTAGCAGCCATCA 59.506 61.111 0.00 0.00 0.00 3.07
1540 1550 0.397957 GGTGAAGTTGGGGTTTGGGT 60.398 55.000 0.00 0.00 0.00 4.51
1541 1551 1.491668 GTGAAGTTGGGGTTTGGGTT 58.508 50.000 0.00 0.00 0.00 4.11
1606 1616 1.886655 GCCACTTGTAACAAGAGGGGG 60.887 57.143 4.55 2.89 0.00 5.40
1681 1692 5.971763 TGTGGTTAGACATTGCTTGTTTTT 58.028 33.333 0.00 0.00 39.18 1.94
1725 1742 6.186957 ACATTCATACATGGAGGCAGTTTTA 58.813 36.000 0.00 0.00 0.00 1.52
1829 1847 3.258372 ACGTGTGATGTGAGTCTGGTTAT 59.742 43.478 0.00 0.00 0.00 1.89
1887 1905 4.717233 AATACCACGATGTACAACCGTA 57.283 40.909 21.00 10.53 34.91 4.02
1968 1986 6.358974 TTGAAGATTGTATCAGTGTCCAGA 57.641 37.500 0.00 0.00 0.00 3.86
1969 1987 6.358974 TGAAGATTGTATCAGTGTCCAGAA 57.641 37.500 0.00 0.00 0.00 3.02
1970 1988 6.166279 TGAAGATTGTATCAGTGTCCAGAAC 58.834 40.000 0.00 0.00 0.00 3.01
1971 1989 4.748892 AGATTGTATCAGTGTCCAGAACG 58.251 43.478 0.00 0.00 0.00 3.95
1972 1990 4.462834 AGATTGTATCAGTGTCCAGAACGA 59.537 41.667 0.00 0.00 0.00 3.85
1973 1991 3.570926 TGTATCAGTGTCCAGAACGAC 57.429 47.619 0.00 0.00 0.00 4.34
1974 1992 2.888414 TGTATCAGTGTCCAGAACGACA 59.112 45.455 0.00 0.00 40.44 4.35
1975 1993 2.732412 ATCAGTGTCCAGAACGACAG 57.268 50.000 0.00 0.00 43.26 3.51
1976 1994 0.032130 TCAGTGTCCAGAACGACAGC 59.968 55.000 0.00 0.00 43.26 4.40
1979 1997 1.139058 AGTGTCCAGAACGACAGCTTT 59.861 47.619 0.00 0.00 43.26 3.51
1980 1998 1.940613 GTGTCCAGAACGACAGCTTTT 59.059 47.619 0.00 0.00 43.26 2.27
1981 1999 3.128349 GTGTCCAGAACGACAGCTTTTA 58.872 45.455 0.00 0.00 43.26 1.52
1982 2000 3.184581 GTGTCCAGAACGACAGCTTTTAG 59.815 47.826 0.00 0.00 43.26 1.85
1983 2001 3.069016 TGTCCAGAACGACAGCTTTTAGA 59.931 43.478 0.00 0.00 37.85 2.10
1984 2002 3.675698 GTCCAGAACGACAGCTTTTAGAG 59.324 47.826 0.00 0.00 32.74 2.43
1985 2003 2.996621 CCAGAACGACAGCTTTTAGAGG 59.003 50.000 0.00 0.00 0.00 3.69
1986 2004 3.306088 CCAGAACGACAGCTTTTAGAGGA 60.306 47.826 0.00 0.00 0.00 3.71
1988 2006 2.745515 ACGACAGCTTTTAGAGGACC 57.254 50.000 0.00 0.00 0.00 4.46
1989 2007 1.067776 ACGACAGCTTTTAGAGGACCG 60.068 52.381 0.00 0.00 0.00 4.79
2066 2107 0.542467 TTGTTGCTCCCATGGCATGT 60.542 50.000 24.80 0.00 39.54 3.21
2082 2123 2.549778 GCATGTAGAGAGGGAAGGATGC 60.550 54.545 0.00 0.00 0.00 3.91
2115 2162 0.648441 CGATGGTGCATTGCAATTGC 59.352 50.000 23.69 23.69 41.47 3.56
2171 2218 4.313020 AGAATCTCCTGGCAACTCATTT 57.687 40.909 0.00 0.00 37.61 2.32
2543 2630 0.613260 AACAAGCCGCACTATCTCCA 59.387 50.000 0.00 0.00 0.00 3.86
2777 2943 2.749076 TGTTGCTCCATGTTACATGAGC 59.251 45.455 26.97 26.97 36.34 4.26
2888 3054 5.065474 GGCTTTCATGTTATGCGGTAGTTTA 59.935 40.000 0.00 0.00 0.00 2.01
2898 3064 4.792521 TGCGGTAGTTTATTTTTGCCAT 57.207 36.364 0.00 0.00 0.00 4.40
3140 3306 4.913335 AAGGATGCTATTGATGCAACAG 57.087 40.909 0.00 0.00 44.01 3.16
3150 3319 4.652421 TTGATGCAACAGCTTCAGAAAA 57.348 36.364 0.00 0.00 41.54 2.29
3151 3320 3.968649 TGATGCAACAGCTTCAGAAAAC 58.031 40.909 0.00 0.00 37.47 2.43
3152 3321 3.380954 TGATGCAACAGCTTCAGAAAACA 59.619 39.130 0.00 0.00 37.47 2.83
3188 3357 0.963962 AGATTGCACAAGCCCAACAG 59.036 50.000 0.00 0.00 41.13 3.16
3194 3363 2.337532 CAAGCCCAACAGCAGCAC 59.662 61.111 0.00 0.00 34.23 4.40
3315 3484 1.528129 CTCCCAGAAGTCTGCAAACC 58.472 55.000 2.59 0.00 42.47 3.27
3407 3576 4.452795 GCAGAAGGAACTAACCAACTTCTC 59.547 45.833 0.00 0.00 44.23 2.87
3508 3820 3.049227 TCGTTGGCGAGATGTGATG 57.951 52.632 0.00 0.00 42.81 3.07
3511 3823 1.325640 CGTTGGCGAGATGTGATGAAG 59.674 52.381 0.00 0.00 41.33 3.02
3601 3913 3.205282 CCTTATTTCAGGTGGATCCCCTT 59.795 47.826 16.74 7.48 36.75 3.95
3692 4004 6.037786 TGTTCATTCTTTGTAGATCGTCCT 57.962 37.500 0.00 0.00 0.00 3.85
3805 4117 2.153645 CACTAGGTGACTGCATTTGCA 58.846 47.619 4.97 4.97 43.88 4.08
3868 4180 0.956633 AGGATGTGTTGCTGCACTTG 59.043 50.000 0.00 0.00 39.89 3.16
3988 4302 3.309138 CAGAGAGAAATTGGCATCTGACG 59.691 47.826 6.21 0.00 37.03 4.35
4088 4402 8.846943 ATGTTCTATATGAAATTGCCACGATA 57.153 30.769 0.00 0.00 36.30 2.92
4121 4435 7.979537 TCCCATTATATTCAGTACGTATGCATC 59.020 37.037 0.19 0.00 0.00 3.91
4143 4457 2.212812 TGCTATGCACAAATCCCACA 57.787 45.000 0.00 0.00 31.71 4.17
4152 4466 4.072131 GCACAAATCCCACAGAACTCTAA 58.928 43.478 0.00 0.00 0.00 2.10
4177 4491 2.484417 CCATGGCACTGTCCTGACTATC 60.484 54.545 0.00 0.00 0.00 2.08
4204 4518 3.333029 AATTTGCTGTATGTTTGGGGC 57.667 42.857 0.00 0.00 0.00 5.80
4205 4519 2.008242 TTTGCTGTATGTTTGGGGCT 57.992 45.000 0.00 0.00 0.00 5.19
4206 4520 2.008242 TTGCTGTATGTTTGGGGCTT 57.992 45.000 0.00 0.00 0.00 4.35
4207 4521 2.008242 TGCTGTATGTTTGGGGCTTT 57.992 45.000 0.00 0.00 0.00 3.51
7988 9156 1.692519 AGTTGACAAGCCGGTAGTCTT 59.307 47.619 19.01 5.60 33.56 3.01
8194 9364 1.744368 CTTGCATCTGCGCCTCTGT 60.744 57.895 4.18 0.00 45.83 3.41
8204 9374 3.058293 TCTGCGCCTCTGTTTTTAACATG 60.058 43.478 4.18 0.00 41.26 3.21
8282 9452 0.037303 CCCAACAGCCAGAGTGTGAT 59.963 55.000 0.00 0.00 0.00 3.06
8479 9650 4.250464 CACTGTTTCGGCAGATAAACCTA 58.750 43.478 8.98 0.00 39.62 3.08
8558 9730 8.375506 GGAGATGTGGGTCATAACAATCTATTA 58.624 37.037 0.00 0.00 36.83 0.98
8679 9851 9.811995 ATTGATTAATCCATGTCTGAACAAATG 57.188 29.630 12.90 0.00 39.30 2.32
8745 9917 3.411446 TGATCGTGCAATGAAGACCTTT 58.589 40.909 0.00 0.00 34.16 3.11
8824 9996 6.692486 TCCGCTCTTCCATATATTCTTTCTC 58.308 40.000 0.00 0.00 0.00 2.87
8864 10036 1.089112 TGTTGCATCATTCTGCTCGG 58.911 50.000 0.00 0.00 42.75 4.63
8914 10086 3.702045 GGCTCTAGGACATACAACTCACT 59.298 47.826 0.00 0.00 0.00 3.41
8962 10135 3.891977 ACAGTGGATATACGAGCATCTGT 59.108 43.478 0.00 0.00 0.00 3.41
9059 10234 2.456119 GCTGACTGGGTCATTCGCG 61.456 63.158 0.00 0.00 41.94 5.87
9062 10237 1.080093 GACTGGGTCATTCGCGACA 60.080 57.895 9.15 0.49 37.66 4.35
9097 10272 5.305902 TGAGTCACCTGTAACCTTGTTATCA 59.694 40.000 0.00 0.00 0.00 2.15
9147 10322 5.227391 CGTTGTACATAACGTTTTGCAAACA 59.773 36.000 12.39 15.31 46.02 2.83
9281 10460 4.339530 TGTGCAAATACTACAAACTTGCCA 59.660 37.500 0.00 0.00 41.29 4.92
9316 10495 3.305199 GCATTAATCCTCATTGCTGCCTC 60.305 47.826 0.00 0.00 30.23 4.70
9339 10519 0.400815 AGTGGTGGGTGGTAGGTGAA 60.401 55.000 0.00 0.00 0.00 3.18
9345 10525 1.697432 TGGGTGGTAGGTGAAACAGAG 59.303 52.381 0.00 0.00 39.98 3.35
9374 10554 6.294361 TGTGCAAATACTACAGGTAGATGT 57.706 37.500 13.11 0.00 36.97 3.06
9405 10585 4.794248 TTTATTATGCACTGTAGCTGCG 57.206 40.909 0.00 0.00 37.46 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.325082 GCCGTCAACAACATCGCCT 61.325 57.895 0.00 0.00 0.00 5.52
2 3 2.175811 GCCGTCAACAACATCGCC 59.824 61.111 0.00 0.00 0.00 5.54
3 4 2.202171 CGCCGTCAACAACATCGC 60.202 61.111 0.00 0.00 0.00 4.58
4 5 1.129809 GTCGCCGTCAACAACATCG 59.870 57.895 0.00 0.00 0.00 3.84
5 6 1.225376 TGGTCGCCGTCAACAACATC 61.225 55.000 0.00 0.00 0.00 3.06
8 9 1.557443 CTCTGGTCGCCGTCAACAAC 61.557 60.000 0.00 0.00 0.00 3.32
11 12 0.731855 GTACTCTGGTCGCCGTCAAC 60.732 60.000 0.00 0.00 0.00 3.18
13 14 0.963856 ATGTACTCTGGTCGCCGTCA 60.964 55.000 0.00 0.00 0.00 4.35
14 15 0.525668 CATGTACTCTGGTCGCCGTC 60.526 60.000 0.00 0.00 0.00 4.79
16 17 0.802222 CACATGTACTCTGGTCGCCG 60.802 60.000 0.00 0.00 0.00 6.46
17 18 1.084370 GCACATGTACTCTGGTCGCC 61.084 60.000 0.00 0.00 0.00 5.54
19 20 0.170339 TCGCACATGTACTCTGGTCG 59.830 55.000 0.00 1.01 0.00 4.79
20 21 2.159240 TCATCGCACATGTACTCTGGTC 60.159 50.000 0.00 0.00 0.00 4.02
22 23 2.467838 CTCATCGCACATGTACTCTGG 58.532 52.381 0.00 0.00 0.00 3.86
23 24 2.099756 TCCTCATCGCACATGTACTCTG 59.900 50.000 0.00 0.00 0.00 3.35
24 25 2.379005 TCCTCATCGCACATGTACTCT 58.621 47.619 0.00 0.00 0.00 3.24
25 26 2.860735 GTTCCTCATCGCACATGTACTC 59.139 50.000 0.00 0.00 0.00 2.59
26 27 2.735444 CGTTCCTCATCGCACATGTACT 60.735 50.000 0.00 0.00 0.00 2.73
27 28 1.588404 CGTTCCTCATCGCACATGTAC 59.412 52.381 0.00 0.00 0.00 2.90
28 29 1.470805 CCGTTCCTCATCGCACATGTA 60.471 52.381 0.00 0.00 0.00 2.29
29 30 0.740868 CCGTTCCTCATCGCACATGT 60.741 55.000 0.00 0.00 0.00 3.21
32 33 2.264480 CCCGTTCCTCATCGCACA 59.736 61.111 0.00 0.00 0.00 4.57
34 35 4.812476 CGCCCGTTCCTCATCGCA 62.812 66.667 0.00 0.00 0.00 5.10
37 38 4.508128 TCGCGCCCGTTCCTCATC 62.508 66.667 0.00 0.00 35.54 2.92
56 57 1.291132 GACTATGGTGAGCCTTTCGC 58.709 55.000 0.00 0.00 35.27 4.70
57 58 1.802880 CGGACTATGGTGAGCCTTTCG 60.803 57.143 0.00 0.00 35.27 3.46
59 60 1.568504 TCGGACTATGGTGAGCCTTT 58.431 50.000 0.00 0.00 35.27 3.11
61 62 1.115467 CTTCGGACTATGGTGAGCCT 58.885 55.000 0.00 0.00 35.27 4.58
62 63 0.105039 CCTTCGGACTATGGTGAGCC 59.895 60.000 0.00 0.00 0.00 4.70
63 64 0.105039 CCCTTCGGACTATGGTGAGC 59.895 60.000 0.00 0.00 0.00 4.26
64 65 1.776662 TCCCTTCGGACTATGGTGAG 58.223 55.000 0.00 0.00 31.13 3.51
66 67 2.039418 TCATCCCTTCGGACTATGGTG 58.961 52.381 0.00 0.00 42.48 4.17
67 68 2.471815 TCATCCCTTCGGACTATGGT 57.528 50.000 0.00 0.00 42.48 3.55
69 70 2.613977 GGCATCATCCCTTCGGACTATG 60.614 54.545 0.00 0.00 42.48 2.23
70 71 1.625818 GGCATCATCCCTTCGGACTAT 59.374 52.381 0.00 0.00 42.48 2.12
71 72 1.048601 GGCATCATCCCTTCGGACTA 58.951 55.000 0.00 0.00 42.48 2.59
74 75 1.748329 CTCGGCATCATCCCTTCGGA 61.748 60.000 0.00 0.00 44.33 4.55
76 77 1.958205 GCTCGGCATCATCCCTTCG 60.958 63.158 0.00 0.00 0.00 3.79
79 80 3.933722 CCGCTCGGCATCATCCCT 61.934 66.667 0.00 0.00 0.00 4.20
80 81 4.996434 CCCGCTCGGCATCATCCC 62.996 72.222 2.18 0.00 0.00 3.85
90 91 4.031719 ATCTCGATCGCCCGCTCG 62.032 66.667 11.09 7.51 35.41 5.03
91 92 2.429907 CATCTCGATCGCCCGCTC 60.430 66.667 11.09 0.00 0.00 5.03
92 93 2.907407 TCATCTCGATCGCCCGCT 60.907 61.111 11.09 0.00 0.00 5.52
93 94 2.429907 CTCATCTCGATCGCCCGC 60.430 66.667 11.09 0.00 0.00 6.13
94 95 2.429907 GCTCATCTCGATCGCCCG 60.430 66.667 11.09 1.19 0.00 6.13
96 97 2.429907 CCGCTCATCTCGATCGCC 60.430 66.667 11.09 0.00 31.88 5.54
97 98 2.429907 CCCGCTCATCTCGATCGC 60.430 66.667 11.09 0.00 31.88 4.58
98 99 1.208870 CTCCCGCTCATCTCGATCG 59.791 63.158 9.36 9.36 33.03 3.69
99 100 0.891449 TCCTCCCGCTCATCTCGATC 60.891 60.000 0.00 0.00 0.00 3.69
100 101 0.893270 CTCCTCCCGCTCATCTCGAT 60.893 60.000 0.00 0.00 0.00 3.59
101 102 1.527148 CTCCTCCCGCTCATCTCGA 60.527 63.158 0.00 0.00 0.00 4.04
102 103 2.560119 CCTCCTCCCGCTCATCTCG 61.560 68.421 0.00 0.00 0.00 4.04
105 106 2.801631 CCACCTCCTCCCGCTCATC 61.802 68.421 0.00 0.00 0.00 2.92
106 107 2.765807 CCACCTCCTCCCGCTCAT 60.766 66.667 0.00 0.00 0.00 2.90
124 125 4.812476 TTCGTCGGCGGCATGGAG 62.812 66.667 13.62 0.00 38.89 3.86
128 129 4.814294 GGAGTTCGTCGGCGGCAT 62.814 66.667 13.62 0.00 38.89 4.40
136 137 4.093952 TCGTCGCCGGAGTTCGTC 62.094 66.667 5.05 0.00 37.11 4.20
137 138 4.395583 GTCGTCGCCGGAGTTCGT 62.396 66.667 5.05 0.00 37.11 3.85
159 160 0.460811 GCTGATGACGTGAGCCATCA 60.461 55.000 14.69 14.69 44.66 3.07
160 161 2.305405 GCTGATGACGTGAGCCATC 58.695 57.895 0.00 0.00 39.55 3.51
164 165 0.654683 GATTGGCTGATGACGTGAGC 59.345 55.000 0.00 0.00 0.00 4.26
165 166 0.926155 CGATTGGCTGATGACGTGAG 59.074 55.000 0.00 0.00 0.00 3.51
166 167 1.083806 GCGATTGGCTGATGACGTGA 61.084 55.000 0.00 0.00 39.11 4.35
167 168 1.349627 GCGATTGGCTGATGACGTG 59.650 57.895 0.00 0.00 39.11 4.49
168 169 1.815421 GGCGATTGGCTGATGACGT 60.815 57.895 0.00 0.00 42.94 4.34
169 170 1.815003 TGGCGATTGGCTGATGACG 60.815 57.895 8.17 0.00 42.94 4.35
170 171 0.745845 AGTGGCGATTGGCTGATGAC 60.746 55.000 8.17 0.00 42.94 3.06
171 172 0.745486 CAGTGGCGATTGGCTGATGA 60.745 55.000 8.17 0.00 42.94 2.92
172 173 1.028330 ACAGTGGCGATTGGCTGATG 61.028 55.000 8.17 6.38 42.94 3.07
173 174 0.322816 AACAGTGGCGATTGGCTGAT 60.323 50.000 8.17 0.00 42.94 2.90
177 178 1.210155 GACAACAGTGGCGATTGGC 59.790 57.895 0.00 0.00 42.51 4.52
187 188 0.035439 CTATTGGGGGCGACAACAGT 60.035 55.000 0.00 0.00 0.00 3.55
188 189 0.748005 CCTATTGGGGGCGACAACAG 60.748 60.000 0.00 0.00 0.00 3.16
189 190 1.202099 TCCTATTGGGGGCGACAACA 61.202 55.000 0.00 0.00 35.33 3.33
190 191 0.746923 GTCCTATTGGGGGCGACAAC 60.747 60.000 0.00 0.00 35.33 3.32
191 192 1.202099 TGTCCTATTGGGGGCGACAA 61.202 55.000 0.00 0.00 32.87 3.18
193 194 1.146263 CTGTCCTATTGGGGGCGAC 59.854 63.158 0.00 0.00 32.87 5.19
194 195 0.619255 TTCTGTCCTATTGGGGGCGA 60.619 55.000 0.00 0.00 32.87 5.54
195 196 0.463833 GTTCTGTCCTATTGGGGGCG 60.464 60.000 0.00 0.00 32.87 6.13
196 197 0.106669 GGTTCTGTCCTATTGGGGGC 60.107 60.000 0.00 0.00 35.33 5.80
197 198 1.596496 AGGTTCTGTCCTATTGGGGG 58.404 55.000 0.00 0.00 35.87 5.40
198 199 2.438392 GGTAGGTTCTGTCCTATTGGGG 59.562 54.545 0.00 0.00 41.37 4.96
199 200 3.134804 CAGGTAGGTTCTGTCCTATTGGG 59.865 52.174 0.00 0.00 41.37 4.12
200 201 3.134804 CCAGGTAGGTTCTGTCCTATTGG 59.865 52.174 13.90 13.90 41.37 3.16
201 202 4.408182 CCAGGTAGGTTCTGTCCTATTG 57.592 50.000 0.00 0.00 41.37 1.90
214 215 1.672854 TTCGATGCCGACCAGGTAGG 61.673 60.000 14.46 14.46 45.50 3.18
215 216 0.527817 GTTCGATGCCGACCAGGTAG 60.528 60.000 0.00 0.00 45.50 3.18
216 217 1.514087 GTTCGATGCCGACCAGGTA 59.486 57.895 0.00 0.00 45.50 3.08
217 218 2.264794 GTTCGATGCCGACCAGGT 59.735 61.111 0.00 0.00 45.50 4.00
218 219 2.885644 CGTTCGATGCCGACCAGG 60.886 66.667 0.00 0.00 45.50 4.45
219 220 2.629050 ATCCGTTCGATGCCGACCAG 62.629 60.000 0.00 0.00 45.50 4.00
220 221 2.622903 GATCCGTTCGATGCCGACCA 62.623 60.000 0.00 0.00 45.50 4.02
221 222 1.949631 GATCCGTTCGATGCCGACC 60.950 63.158 0.00 0.00 45.50 4.79
222 223 0.935366 GAGATCCGTTCGATGCCGAC 60.935 60.000 0.00 0.00 45.50 4.79
227 228 2.159240 TCCTGTTGAGATCCGTTCGATG 60.159 50.000 0.00 0.00 0.00 3.84
228 229 2.099921 CTCCTGTTGAGATCCGTTCGAT 59.900 50.000 0.00 0.00 44.42 3.59
229 230 1.472878 CTCCTGTTGAGATCCGTTCGA 59.527 52.381 0.00 0.00 44.42 3.71
231 232 2.417515 GGACTCCTGTTGAGATCCGTTC 60.418 54.545 0.00 0.00 44.42 3.95
234 235 1.135915 CTGGACTCCTGTTGAGATCCG 59.864 57.143 0.00 0.00 44.42 4.18
238 239 2.381752 TCACTGGACTCCTGTTGAGA 57.618 50.000 4.88 0.00 44.42 3.27
240 241 4.437682 AAATTCACTGGACTCCTGTTGA 57.562 40.909 4.88 4.53 33.44 3.18
241 242 6.824305 ATTAAATTCACTGGACTCCTGTTG 57.176 37.500 4.88 2.49 33.44 3.33
243 244 6.542821 TGAATTAAATTCACTGGACTCCTGT 58.457 36.000 1.77 1.77 43.84 4.00
245 246 6.183347 CCTGAATTAAATTCACTGGACTCCT 58.817 40.000 0.00 0.00 43.84 3.69
246 247 5.946377 ACCTGAATTAAATTCACTGGACTCC 59.054 40.000 0.00 0.00 43.84 3.85
247 248 6.127897 CCACCTGAATTAAATTCACTGGACTC 60.128 42.308 0.00 0.00 43.84 3.36
249 250 5.710099 TCCACCTGAATTAAATTCACTGGAC 59.290 40.000 2.02 0.00 43.84 4.02
251 252 5.945784 TCTCCACCTGAATTAAATTCACTGG 59.054 40.000 0.00 0.00 43.84 4.00
252 253 7.175641 ACTTCTCCACCTGAATTAAATTCACTG 59.824 37.037 0.00 0.00 43.84 3.66
253 254 7.175641 CACTTCTCCACCTGAATTAAATTCACT 59.824 37.037 0.00 0.00 43.84 3.41
254 255 7.308435 CACTTCTCCACCTGAATTAAATTCAC 58.692 38.462 0.00 0.00 43.84 3.18
255 256 6.071952 GCACTTCTCCACCTGAATTAAATTCA 60.072 38.462 0.00 0.00 46.30 2.57
257 258 5.106157 CGCACTTCTCCACCTGAATTAAATT 60.106 40.000 0.00 0.00 0.00 1.82
258 259 4.396166 CGCACTTCTCCACCTGAATTAAAT 59.604 41.667 0.00 0.00 0.00 1.40
259 260 3.751175 CGCACTTCTCCACCTGAATTAAA 59.249 43.478 0.00 0.00 0.00 1.52
260 261 3.334691 CGCACTTCTCCACCTGAATTAA 58.665 45.455 0.00 0.00 0.00 1.40
261 262 2.354704 CCGCACTTCTCCACCTGAATTA 60.355 50.000 0.00 0.00 0.00 1.40
264 265 1.371183 CCGCACTTCTCCACCTGAA 59.629 57.895 0.00 0.00 0.00 3.02
265 266 2.583441 CCCGCACTTCTCCACCTGA 61.583 63.158 0.00 0.00 0.00 3.86
266 267 2.046892 CCCGCACTTCTCCACCTG 60.047 66.667 0.00 0.00 0.00 4.00
268 269 1.966451 CAACCCGCACTTCTCCACC 60.966 63.158 0.00 0.00 0.00 4.61
269 270 0.321653 ATCAACCCGCACTTCTCCAC 60.322 55.000 0.00 0.00 0.00 4.02
270 271 0.400213 AATCAACCCGCACTTCTCCA 59.600 50.000 0.00 0.00 0.00 3.86
271 272 1.087501 GAATCAACCCGCACTTCTCC 58.912 55.000 0.00 0.00 0.00 3.71
272 273 1.087501 GGAATCAACCCGCACTTCTC 58.912 55.000 0.00 0.00 0.00 2.87
273 274 0.400213 TGGAATCAACCCGCACTTCT 59.600 50.000 0.00 0.00 0.00 2.85
275 276 0.400213 TCTGGAATCAACCCGCACTT 59.600 50.000 0.00 0.00 0.00 3.16
277 278 0.036388 TCTCTGGAATCAACCCGCAC 60.036 55.000 0.00 0.00 0.00 5.34
280 281 2.098117 GCATTTCTCTGGAATCAACCCG 59.902 50.000 0.00 0.00 0.00 5.28
281 282 3.091545 TGCATTTCTCTGGAATCAACCC 58.908 45.455 0.00 0.00 0.00 4.11
282 283 4.441079 CCATGCATTTCTCTGGAATCAACC 60.441 45.833 0.00 0.00 0.00 3.77
285 286 3.293337 CCCATGCATTTCTCTGGAATCA 58.707 45.455 0.00 0.00 0.00 2.57
289 290 0.396139 GCCCCATGCATTTCTCTGGA 60.396 55.000 0.00 0.00 40.77 3.86
290 291 0.396695 AGCCCCATGCATTTCTCTGG 60.397 55.000 0.00 0.00 44.83 3.86
291 292 1.481871 AAGCCCCATGCATTTCTCTG 58.518 50.000 0.00 0.00 44.83 3.35
292 293 1.829222 CAAAGCCCCATGCATTTCTCT 59.171 47.619 0.00 0.00 44.83 3.10
293 294 1.551883 ACAAAGCCCCATGCATTTCTC 59.448 47.619 0.00 0.00 44.83 2.87
294 295 1.276989 CACAAAGCCCCATGCATTTCT 59.723 47.619 0.00 0.00 44.83 2.52
295 296 1.275856 TCACAAAGCCCCATGCATTTC 59.724 47.619 0.00 0.00 44.83 2.17
297 298 1.350071 TTCACAAAGCCCCATGCATT 58.650 45.000 0.00 0.00 44.83 3.56
299 300 1.126488 TTTTCACAAAGCCCCATGCA 58.874 45.000 0.00 0.00 44.83 3.96
301 302 3.473923 ACTTTTTCACAAAGCCCCATG 57.526 42.857 0.00 0.00 0.00 3.66
302 303 4.837860 TGATACTTTTTCACAAAGCCCCAT 59.162 37.500 0.00 0.00 0.00 4.00
303 304 4.219115 TGATACTTTTTCACAAAGCCCCA 58.781 39.130 0.00 0.00 0.00 4.96
304 305 4.864704 TGATACTTTTTCACAAAGCCCC 57.135 40.909 0.00 0.00 0.00 5.80
305 306 4.686091 GCTTGATACTTTTTCACAAAGCCC 59.314 41.667 0.00 0.00 0.00 5.19
306 307 4.382754 CGCTTGATACTTTTTCACAAAGCC 59.617 41.667 0.00 0.00 0.00 4.35
307 308 5.212194 TCGCTTGATACTTTTTCACAAAGC 58.788 37.500 0.00 0.00 0.00 3.51
308 309 7.077605 TCATCGCTTGATACTTTTTCACAAAG 58.922 34.615 0.00 0.00 0.00 2.77
310 311 6.552859 TCATCGCTTGATACTTTTTCACAA 57.447 33.333 0.00 0.00 0.00 3.33
311 312 6.455513 CGATCATCGCTTGATACTTTTTCACA 60.456 38.462 0.00 0.00 45.29 3.58
313 314 5.810074 TCGATCATCGCTTGATACTTTTTCA 59.190 36.000 0.80 0.00 45.29 2.69
314 315 6.274001 TCGATCATCGCTTGATACTTTTTC 57.726 37.500 0.80 0.00 45.29 2.29
316 317 5.406780 GGATCGATCATCGCTTGATACTTTT 59.593 40.000 25.93 0.00 45.29 2.27
317 318 4.926238 GGATCGATCATCGCTTGATACTTT 59.074 41.667 25.93 0.00 45.29 2.66
318 319 4.489810 GGATCGATCATCGCTTGATACTT 58.510 43.478 25.93 0.00 45.29 2.24
320 321 2.848887 CGGATCGATCATCGCTTGATAC 59.151 50.000 25.93 4.02 45.29 2.24
323 324 0.664466 GCGGATCGATCATCGCTTGA 60.664 55.000 29.73 0.00 40.21 3.02
325 326 1.373497 GGCGGATCGATCATCGCTT 60.373 57.895 32.87 0.00 40.21 4.68
326 327 2.259818 GGCGGATCGATCATCGCT 59.740 61.111 32.87 0.00 40.21 4.93
327 328 2.811317 GGGCGGATCGATCATCGC 60.811 66.667 29.40 29.40 40.21 4.58
328 329 2.125912 GGGGCGGATCGATCATCG 60.126 66.667 25.93 20.90 42.10 3.84
330 331 3.695606 CGGGGGCGGATCGATCAT 61.696 66.667 25.93 0.00 0.00 2.45
364 365 4.704833 TCCAGAGCCAACCGCAGC 62.705 66.667 0.00 0.00 41.38 5.25
365 366 1.888436 TAGTCCAGAGCCAACCGCAG 61.888 60.000 0.00 0.00 41.38 5.18
366 367 1.476845 TTAGTCCAGAGCCAACCGCA 61.477 55.000 0.00 0.00 41.38 5.69
367 368 0.321298 TTTAGTCCAGAGCCAACCGC 60.321 55.000 0.00 0.00 37.98 5.68
369 370 2.858745 TGTTTTAGTCCAGAGCCAACC 58.141 47.619 0.00 0.00 0.00 3.77
370 371 4.072131 TGATGTTTTAGTCCAGAGCCAAC 58.928 43.478 0.00 0.00 0.00 3.77
372 373 3.072330 TGTGATGTTTTAGTCCAGAGCCA 59.928 43.478 0.00 0.00 0.00 4.75
373 374 3.674997 TGTGATGTTTTAGTCCAGAGCC 58.325 45.455 0.00 0.00 0.00 4.70
374 375 6.341316 TCTATGTGATGTTTTAGTCCAGAGC 58.659 40.000 0.00 0.00 0.00 4.09
375 376 7.551585 ACTCTATGTGATGTTTTAGTCCAGAG 58.448 38.462 0.00 0.00 0.00 3.35
376 377 7.482169 ACTCTATGTGATGTTTTAGTCCAGA 57.518 36.000 0.00 0.00 0.00 3.86
392 393 2.371841 TCCCACAACTTGCACTCTATGT 59.628 45.455 0.00 0.00 0.00 2.29
393 394 3.005554 CTCCCACAACTTGCACTCTATG 58.994 50.000 0.00 0.00 0.00 2.23
395 396 1.347707 CCTCCCACAACTTGCACTCTA 59.652 52.381 0.00 0.00 0.00 2.43
396 397 0.109342 CCTCCCACAACTTGCACTCT 59.891 55.000 0.00 0.00 0.00 3.24
397 398 0.890996 CCCTCCCACAACTTGCACTC 60.891 60.000 0.00 0.00 0.00 3.51
400 401 2.203480 GCCCTCCCACAACTTGCA 60.203 61.111 0.00 0.00 0.00 4.08
402 403 0.607489 CTGAGCCCTCCCACAACTTG 60.607 60.000 0.00 0.00 0.00 3.16
403 404 1.062488 ACTGAGCCCTCCCACAACTT 61.062 55.000 0.00 0.00 0.00 2.66
404 405 1.062488 AACTGAGCCCTCCCACAACT 61.062 55.000 0.00 0.00 0.00 3.16
405 406 0.606673 GAACTGAGCCCTCCCACAAC 60.607 60.000 0.00 0.00 0.00 3.32
407 408 1.461268 TGAACTGAGCCCTCCCACA 60.461 57.895 0.00 0.00 0.00 4.17
408 409 1.003233 GTGAACTGAGCCCTCCCAC 60.003 63.158 0.00 0.00 0.00 4.61
409 410 0.768221 AAGTGAACTGAGCCCTCCCA 60.768 55.000 0.00 0.00 0.00 4.37
410 411 0.402121 AAAGTGAACTGAGCCCTCCC 59.598 55.000 0.00 0.00 0.00 4.30
411 412 1.882623 CAAAAGTGAACTGAGCCCTCC 59.117 52.381 0.00 0.00 0.00 4.30
412 413 1.268079 GCAAAAGTGAACTGAGCCCTC 59.732 52.381 0.00 0.00 0.00 4.30
415 416 0.944386 TCGCAAAAGTGAACTGAGCC 59.056 50.000 0.00 0.00 0.00 4.70
417 418 7.132213 TCTAAAATTCGCAAAAGTGAACTGAG 58.868 34.615 0.00 0.00 0.00 3.35
419 420 6.129352 GCTCTAAAATTCGCAAAAGTGAACTG 60.129 38.462 0.00 0.00 0.00 3.16
421 422 5.685511 TGCTCTAAAATTCGCAAAAGTGAAC 59.314 36.000 0.00 0.00 0.00 3.18
422 423 5.826586 TGCTCTAAAATTCGCAAAAGTGAA 58.173 33.333 0.00 0.00 0.00 3.18
423 424 5.431420 TGCTCTAAAATTCGCAAAAGTGA 57.569 34.783 0.00 0.00 0.00 3.41
424 425 6.509317 TTTGCTCTAAAATTCGCAAAAGTG 57.491 33.333 5.88 0.00 45.85 3.16
428 429 6.699204 TGATGTTTTGCTCTAAAATTCGCAAA 59.301 30.769 4.38 4.38 46.77 3.68
430 431 5.629020 GTGATGTTTTGCTCTAAAATTCGCA 59.371 36.000 0.00 0.00 40.17 5.10
431 432 5.629020 TGTGATGTTTTGCTCTAAAATTCGC 59.371 36.000 0.00 0.00 40.17 4.70
432 433 7.801547 ATGTGATGTTTTGCTCTAAAATTCG 57.198 32.000 0.00 0.00 40.17 3.34
433 434 9.195411 TGAATGTGATGTTTTGCTCTAAAATTC 57.805 29.630 0.00 0.00 40.17 2.17
434 435 9.199982 CTGAATGTGATGTTTTGCTCTAAAATT 57.800 29.630 0.00 0.00 40.17 1.82
436 437 7.715657 ACTGAATGTGATGTTTTGCTCTAAAA 58.284 30.769 0.00 0.00 35.96 1.52
438 439 6.882610 ACTGAATGTGATGTTTTGCTCTAA 57.117 33.333 0.00 0.00 0.00 2.10
455 456 0.674895 GCTTGTCTCCGCCACTGAAT 60.675 55.000 0.00 0.00 0.00 2.57
456 457 1.301716 GCTTGTCTCCGCCACTGAA 60.302 57.895 0.00 0.00 0.00 3.02
457 458 2.343758 GCTTGTCTCCGCCACTGA 59.656 61.111 0.00 0.00 0.00 3.41
462 463 1.227674 CCATAGGCTTGTCTCCGCC 60.228 63.158 0.00 0.00 46.65 6.13
463 464 1.889573 GCCATAGGCTTGTCTCCGC 60.890 63.158 0.00 0.00 46.69 5.54
464 465 4.445699 GCCATAGGCTTGTCTCCG 57.554 61.111 0.00 0.00 46.69 4.63
475 476 2.616510 GCTATAGCCCCAACTGCCATAG 60.617 54.545 14.13 0.00 34.73 2.23
476 477 1.351017 GCTATAGCCCCAACTGCCATA 59.649 52.381 14.13 0.00 34.31 2.74
477 478 0.111253 GCTATAGCCCCAACTGCCAT 59.889 55.000 14.13 0.00 34.31 4.40
478 479 1.531748 GCTATAGCCCCAACTGCCA 59.468 57.895 14.13 0.00 34.31 4.92
479 480 4.483090 GCTATAGCCCCAACTGCC 57.517 61.111 14.13 0.00 34.31 4.85
489 490 4.159135 TGGTATTACGCTTAGGGCTATAGC 59.841 45.833 16.78 16.78 39.13 2.97
491 492 6.862469 ATTGGTATTACGCTTAGGGCTATA 57.138 37.500 0.00 0.00 39.13 1.31
492 493 5.757099 ATTGGTATTACGCTTAGGGCTAT 57.243 39.130 0.00 0.00 39.13 2.97
493 494 6.127253 GGATATTGGTATTACGCTTAGGGCTA 60.127 42.308 0.00 0.00 39.13 3.93
494 495 5.338137 GGATATTGGTATTACGCTTAGGGCT 60.338 44.000 0.00 0.00 39.13 5.19
495 496 4.874396 GGATATTGGTATTACGCTTAGGGC 59.126 45.833 0.00 0.00 37.64 5.19
497 498 7.660208 ACAAAGGATATTGGTATTACGCTTAGG 59.340 37.037 0.00 0.00 34.56 2.69
498 499 8.603242 ACAAAGGATATTGGTATTACGCTTAG 57.397 34.615 0.00 0.00 34.56 2.18
501 502 9.569122 AATTACAAAGGATATTGGTATTACGCT 57.431 29.630 0.00 0.00 34.56 5.07
502 503 9.821662 GAATTACAAAGGATATTGGTATTACGC 57.178 33.333 0.00 0.00 34.56 4.42
515 516 9.308000 TGTGTATGAAAAGGAATTACAAAGGAT 57.692 29.630 0.00 0.00 0.00 3.24
518 519 9.743057 TGTTGTGTATGAAAAGGAATTACAAAG 57.257 29.630 0.00 0.00 0.00 2.77
560 561 4.295051 GCTAGCTAGCTTGAGTGATACAC 58.705 47.826 33.71 4.16 45.62 2.90
561 562 4.576216 GCTAGCTAGCTTGAGTGATACA 57.424 45.455 33.71 3.45 45.62 2.29
581 582 1.941668 GCATGAGATTACGCCTAGGGC 60.942 57.143 11.72 1.76 46.75 5.19
583 584 3.674682 GCTAGCATGAGATTACGCCTAGG 60.675 52.174 10.63 3.67 0.00 3.02
584 585 3.192422 AGCTAGCATGAGATTACGCCTAG 59.808 47.826 18.83 0.00 0.00 3.02
585 586 3.157881 AGCTAGCATGAGATTACGCCTA 58.842 45.455 18.83 0.00 0.00 3.93
587 588 2.447244 AGCTAGCATGAGATTACGCC 57.553 50.000 18.83 0.00 0.00 5.68
588 589 2.406691 CGAAGCTAGCATGAGATTACGC 59.593 50.000 18.83 0.00 0.00 4.42
605 606 3.837213 AAAATGTGATCAGTGGCGAAG 57.163 42.857 0.00 0.00 0.00 3.79
606 607 4.699735 ACATAAAATGTGATCAGTGGCGAA 59.300 37.500 0.00 0.00 43.01 4.70
607 608 4.260985 ACATAAAATGTGATCAGTGGCGA 58.739 39.130 0.00 0.00 43.01 5.54
608 609 4.621068 ACATAAAATGTGATCAGTGGCG 57.379 40.909 0.00 0.00 43.01 5.69
614 615 9.952030 TCCTACAACTTACATAAAATGTGATCA 57.048 29.630 2.83 0.00 44.60 2.92
617 618 9.391006 GGATCCTACAACTTACATAAAATGTGA 57.609 33.333 3.84 0.00 44.60 3.58
618 619 8.335356 CGGATCCTACAACTTACATAAAATGTG 58.665 37.037 10.75 0.00 44.60 3.21
619 620 7.497909 CCGGATCCTACAACTTACATAAAATGT 59.502 37.037 10.75 0.00 46.92 2.71
620 621 7.041372 CCCGGATCCTACAACTTACATAAAATG 60.041 40.741 10.75 0.00 0.00 2.32
621 622 6.996282 CCCGGATCCTACAACTTACATAAAAT 59.004 38.462 10.75 0.00 0.00 1.82
622 623 6.070078 ACCCGGATCCTACAACTTACATAAAA 60.070 38.462 10.75 0.00 0.00 1.52
623 624 5.426185 ACCCGGATCCTACAACTTACATAAA 59.574 40.000 10.75 0.00 0.00 1.40
624 625 4.964262 ACCCGGATCCTACAACTTACATAA 59.036 41.667 10.75 0.00 0.00 1.90
625 626 4.342951 CACCCGGATCCTACAACTTACATA 59.657 45.833 10.75 0.00 0.00 2.29
626 627 3.134081 CACCCGGATCCTACAACTTACAT 59.866 47.826 10.75 0.00 0.00 2.29
628 629 2.740904 GCACCCGGATCCTACAACTTAC 60.741 54.545 10.75 0.00 0.00 2.34
629 630 1.483415 GCACCCGGATCCTACAACTTA 59.517 52.381 10.75 0.00 0.00 2.24
632 633 1.117150 TAGCACCCGGATCCTACAAC 58.883 55.000 10.75 0.00 0.00 3.32
633 634 2.097110 ATAGCACCCGGATCCTACAA 57.903 50.000 10.75 0.00 0.00 2.41
635 636 2.233186 GGTAATAGCACCCGGATCCTAC 59.767 54.545 10.75 1.89 31.91 3.18
636 637 2.111255 AGGTAATAGCACCCGGATCCTA 59.889 50.000 10.75 0.00 39.62 2.94
638 639 1.275573 GAGGTAATAGCACCCGGATCC 59.724 57.143 0.73 0.00 39.62 3.36
639 640 1.968493 TGAGGTAATAGCACCCGGATC 59.032 52.381 0.73 0.00 39.62 3.36
640 641 2.097110 TGAGGTAATAGCACCCGGAT 57.903 50.000 0.73 0.00 39.62 4.18
641 642 1.868713 TTGAGGTAATAGCACCCGGA 58.131 50.000 0.73 0.00 39.62 5.14
643 644 3.118738 ACTCTTTGAGGTAATAGCACCCG 60.119 47.826 0.00 0.00 39.62 5.28
644 645 4.489306 ACTCTTTGAGGTAATAGCACCC 57.511 45.455 0.00 0.00 39.62 4.61
645 646 5.467063 GCATACTCTTTGAGGTAATAGCACC 59.533 44.000 0.00 0.00 39.02 5.01
646 647 6.018669 GTGCATACTCTTTGAGGTAATAGCAC 60.019 42.308 0.00 0.00 39.16 4.40
648 649 5.175856 CGTGCATACTCTTTGAGGTAATAGC 59.824 44.000 0.00 0.00 33.35 2.97
650 651 6.216801 ACGTGCATACTCTTTGAGGTAATA 57.783 37.500 0.00 0.00 33.35 0.98
653 654 4.530710 AACGTGCATACTCTTTGAGGTA 57.469 40.909 0.00 0.00 33.35 3.08
654 655 3.402628 AACGTGCATACTCTTTGAGGT 57.597 42.857 0.00 0.00 33.35 3.85
655 656 4.070581 CAAACGTGCATACTCTTTGAGG 57.929 45.455 0.00 0.00 33.35 3.86
669 670 5.340667 GCTATCTTTTGAGAAAGCAAACGTG 59.659 40.000 0.00 0.00 41.63 4.49
670 671 5.239525 AGCTATCTTTTGAGAAAGCAAACGT 59.760 36.000 0.00 0.00 41.63 3.99
671 672 5.693814 AGCTATCTTTTGAGAAAGCAAACG 58.306 37.500 0.00 0.00 41.63 3.60
673 674 8.299570 CCTTTAGCTATCTTTTGAGAAAGCAAA 58.700 33.333 0.00 0.00 41.63 3.68
677 678 7.094634 TGCACCTTTAGCTATCTTTTGAGAAAG 60.095 37.037 0.00 0.00 42.92 2.62
678 679 6.714810 TGCACCTTTAGCTATCTTTTGAGAAA 59.285 34.615 0.00 0.00 0.00 2.52
679 680 6.149474 GTGCACCTTTAGCTATCTTTTGAGAA 59.851 38.462 5.22 0.00 0.00 2.87
680 681 5.643777 GTGCACCTTTAGCTATCTTTTGAGA 59.356 40.000 5.22 0.00 0.00 3.27
681 682 5.163713 GGTGCACCTTTAGCTATCTTTTGAG 60.164 44.000 29.12 0.00 0.00 3.02
683 684 4.458989 TGGTGCACCTTTAGCTATCTTTTG 59.541 41.667 34.75 0.00 36.82 2.44
684 685 4.459337 GTGGTGCACCTTTAGCTATCTTTT 59.541 41.667 34.75 0.00 36.82 2.27
685 686 4.010349 GTGGTGCACCTTTAGCTATCTTT 58.990 43.478 34.75 0.00 36.82 2.52
687 688 3.268023 GTGGTGCACCTTTAGCTATCT 57.732 47.619 34.75 0.00 36.82 1.98
699 700 1.668151 GTCTTCCTCGGTGGTGCAC 60.668 63.158 8.80 8.80 37.07 4.57
700 701 2.741092 GTCTTCCTCGGTGGTGCA 59.259 61.111 0.00 0.00 37.07 4.57
701 702 2.432628 CGTCTTCCTCGGTGGTGC 60.433 66.667 0.00 0.00 37.07 5.01
702 703 2.432628 GCGTCTTCCTCGGTGGTG 60.433 66.667 0.00 0.00 37.07 4.17
703 704 2.600769 AGCGTCTTCCTCGGTGGT 60.601 61.111 0.00 0.00 37.62 4.16
705 706 0.038159 AAAGAGCGTCTTCCTCGGTG 60.038 55.000 0.00 0.00 35.27 4.94
706 707 0.244178 GAAAGAGCGTCTTCCTCGGT 59.756 55.000 1.58 0.00 35.27 4.69
707 708 0.528470 AGAAAGAGCGTCTTCCTCGG 59.472 55.000 1.58 0.00 35.27 4.63
709 710 3.305398 TTGAGAAAGAGCGTCTTCCTC 57.695 47.619 6.93 6.93 38.21 3.71
728 729 6.327279 GTGGTGCACCTTTAGTTATCTTTT 57.673 37.500 34.75 0.00 36.82 2.27
745 746 2.432628 CGTCTTCCTCGGTGGTGC 60.433 66.667 0.00 0.00 37.07 5.01
786 787 2.461110 GCACCAGCCATACGAACGG 61.461 63.158 0.00 0.00 33.58 4.44
788 789 0.108138 AGAGCACCAGCCATACGAAC 60.108 55.000 0.00 0.00 43.56 3.95
790 791 0.970427 TCAGAGCACCAGCCATACGA 60.970 55.000 0.00 0.00 43.56 3.43
835 836 4.974645 AAGTATTTGGGTCACTGACAGA 57.025 40.909 10.08 0.00 33.68 3.41
1318 1319 0.391793 GAGTACTGTGGAAGCTGGCC 60.392 60.000 0.00 0.00 0.00 5.36
1606 1616 8.810652 TGATTTGTAATTAAAGGCACAGTTTC 57.189 30.769 0.00 0.00 0.00 2.78
1650 1661 7.701539 AGCAATGTCTAACCACAATTAATCA 57.298 32.000 0.00 0.00 0.00 2.57
1725 1742 9.524903 TTGGATGGATTCCCTATAAGATGATAT 57.475 33.333 0.00 0.00 44.77 1.63
1829 1847 4.917415 GCCGACGAGTACACTAAAAAGTTA 59.083 41.667 0.00 0.00 0.00 2.24
1959 1977 0.753262 AAGCTGTCGTTCTGGACACT 59.247 50.000 0.00 0.00 41.76 3.55
1968 1986 2.609737 CGGTCCTCTAAAAGCTGTCGTT 60.610 50.000 0.00 0.00 0.00 3.85
1969 1987 1.067776 CGGTCCTCTAAAAGCTGTCGT 60.068 52.381 0.00 0.00 0.00 4.34
1970 1988 1.630148 CGGTCCTCTAAAAGCTGTCG 58.370 55.000 0.00 0.00 0.00 4.35
1971 1989 1.549170 TCCGGTCCTCTAAAAGCTGTC 59.451 52.381 0.00 0.00 0.00 3.51
1972 1990 1.640917 TCCGGTCCTCTAAAAGCTGT 58.359 50.000 0.00 0.00 0.00 4.40
1973 1991 2.555199 CATCCGGTCCTCTAAAAGCTG 58.445 52.381 0.00 0.00 0.00 4.24
1974 1992 1.486726 CCATCCGGTCCTCTAAAAGCT 59.513 52.381 0.00 0.00 0.00 3.74
1975 1993 1.475213 CCCATCCGGTCCTCTAAAAGC 60.475 57.143 0.00 0.00 0.00 3.51
1976 1994 1.141053 CCCCATCCGGTCCTCTAAAAG 59.859 57.143 0.00 0.00 0.00 2.27
1979 1997 0.935942 TACCCCATCCGGTCCTCTAA 59.064 55.000 0.00 0.00 37.34 2.10
1980 1998 0.935942 TTACCCCATCCGGTCCTCTA 59.064 55.000 0.00 0.00 37.34 2.43
1981 1999 0.043637 TTTACCCCATCCGGTCCTCT 59.956 55.000 0.00 0.00 37.34 3.69
1982 2000 0.913924 TTTTACCCCATCCGGTCCTC 59.086 55.000 0.00 0.00 37.34 3.71
1983 2001 1.374572 TTTTTACCCCATCCGGTCCT 58.625 50.000 0.00 0.00 37.34 3.85
1984 2002 2.447408 ATTTTTACCCCATCCGGTCC 57.553 50.000 0.00 0.00 37.34 4.46
1985 2003 5.221362 CCATTTATTTTTACCCCATCCGGTC 60.221 44.000 0.00 0.00 37.34 4.79
1986 2004 4.651962 CCATTTATTTTTACCCCATCCGGT 59.348 41.667 0.00 0.00 40.13 5.28
1988 2006 5.862678 ACCATTTATTTTTACCCCATCCG 57.137 39.130 0.00 0.00 0.00 4.18
1989 2007 7.189079 TGAACCATTTATTTTTACCCCATCC 57.811 36.000 0.00 0.00 0.00 3.51
2066 2107 1.692762 GGTGGCATCCTTCCCTCTCTA 60.693 57.143 0.00 0.00 0.00 2.43
2171 2218 9.407380 AGCATAATGACCAACATTTACTATTCA 57.593 29.630 0.00 0.00 45.60 2.57
2531 2618 1.067212 GGTACCTGTGGAGATAGTGCG 59.933 57.143 4.06 0.00 0.00 5.34
2543 2630 6.681729 TCAAAAGTCATTAGAGGTACCTGT 57.318 37.500 22.10 19.24 0.00 4.00
2777 2943 1.202463 CCCTGGCTATGAGAACTCGTG 60.202 57.143 6.78 0.00 0.00 4.35
2888 3054 2.224499 GGTTGTGGTCCATGGCAAAAAT 60.224 45.455 6.96 0.00 0.00 1.82
2898 3064 6.317642 CGATATCAAATTTAGGTTGTGGTCCA 59.682 38.462 3.12 0.00 0.00 4.02
3063 3229 3.063452 GCCAAAGATGATTGCATTTGCTG 59.937 43.478 3.94 0.00 42.66 4.41
3140 3306 3.471680 AGTCAGTCCTGTTTTCTGAAGC 58.528 45.455 0.00 0.00 39.42 3.86
3188 3357 0.886043 TGAGATGTGGTGTGTGCTGC 60.886 55.000 0.00 0.00 0.00 5.25
3194 3363 0.813184 GGGCATTGAGATGTGGTGTG 59.187 55.000 0.00 0.00 35.63 3.82
3315 3484 2.584418 CGGCTGCGATCCTGTCAG 60.584 66.667 0.00 0.00 0.00 3.51
3407 3576 7.029563 CCAAATCTTGTATTTTTCTCTTCCCG 58.970 38.462 0.00 0.00 0.00 5.14
3428 3597 4.261656 CCGTTAATTACCTGTGCAACCAAA 60.262 41.667 0.00 0.00 34.36 3.28
3508 3820 5.759763 ACATGCATTTTTCCTGAAAACCTTC 59.240 36.000 0.00 0.00 39.87 3.46
3511 3823 5.526846 TGAACATGCATTTTTCCTGAAAACC 59.473 36.000 13.07 0.00 39.87 3.27
3601 3913 2.886523 CACTTCTGGATCAAGTTTGCCA 59.113 45.455 0.00 0.00 31.40 4.92
3805 4117 0.112218 TGTGCTTTGCCAGGGTACAT 59.888 50.000 0.00 0.00 0.00 2.29
3868 4180 2.480419 GAGAGAGAGAGAGAGCATACGC 59.520 54.545 0.00 0.00 38.99 4.42
3988 4302 2.578786 TCCTTCGAAAAACCAGGAACC 58.421 47.619 0.00 0.00 32.19 3.62
4079 4393 2.112190 TGGGATAACAGTATCGTGGCA 58.888 47.619 0.00 0.00 37.58 4.92
4088 4402 8.867097 ACGTACTGAATATAATGGGATAACAGT 58.133 33.333 0.00 0.00 37.11 3.55
4143 4457 1.565759 TGCCATGGCCATTAGAGTTCT 59.434 47.619 33.44 0.00 41.09 3.01
4177 4491 6.808212 CCCAAACATACAGCAAATTTACTGAG 59.192 38.462 22.50 14.26 37.35 3.35
4204 4518 2.544267 GAGTCTGGGTCGTGACAAAAAG 59.456 50.000 2.00 0.00 35.81 2.27
4205 4519 2.093394 TGAGTCTGGGTCGTGACAAAAA 60.093 45.455 2.00 0.00 35.81 1.94
4206 4520 1.483004 TGAGTCTGGGTCGTGACAAAA 59.517 47.619 2.00 0.00 35.81 2.44
4207 4521 1.116308 TGAGTCTGGGTCGTGACAAA 58.884 50.000 2.00 0.00 35.81 2.83
7988 9156 6.216801 ACTAACTGTTTGTACTGTGTGAGA 57.783 37.500 5.84 0.00 36.67 3.27
8112 9282 6.804770 ACACCGCACACATTAAAGTTAATA 57.195 33.333 0.00 0.00 32.39 0.98
8194 9364 7.440523 ACCTTTTGTTTGTGCATGTTAAAAA 57.559 28.000 0.00 0.00 0.00 1.94
8204 9374 2.929398 CCAGTCAACCTTTTGTTTGTGC 59.071 45.455 0.00 0.00 34.00 4.57
8282 9452 0.390340 CGCTTCTAACTCCAGCAGCA 60.390 55.000 0.00 0.00 34.88 4.41
8330 9500 3.084039 TCTTGTCTGATGGTTGGCAATC 58.916 45.455 1.92 2.40 0.00 2.67
8558 9730 2.769095 GTCATCCTACCAGAAGGCTCTT 59.231 50.000 0.00 0.00 39.06 2.85
8679 9851 2.033372 GAACTCTAGGTAGTCAGGGGC 58.967 57.143 0.00 0.00 0.00 5.80
8745 9917 9.383519 GAGATTGTAAGAACATGGTGAGAATAA 57.616 33.333 0.00 0.00 34.97 1.40
8809 9981 5.308825 ACAAGCCCGAGAAAGAATATATGG 58.691 41.667 0.00 0.00 0.00 2.74
8824 9996 0.442310 CGTGTGATACAACAAGCCCG 59.558 55.000 0.00 0.00 0.00 6.13
8864 10036 3.882888 TGACAATTTCAACTGGTCAGACC 59.117 43.478 13.35 13.35 39.22 3.85
8914 10086 3.094572 CCGTCCCTTGAGTTAGACCTTA 58.905 50.000 0.00 0.00 0.00 2.69
8962 10135 0.322098 ATCGGCCATCGTTTTGTCCA 60.322 50.000 2.24 0.00 40.32 4.02
9059 10234 1.814394 TGACTCATGCAATTGCCTGTC 59.186 47.619 27.79 25.21 41.18 3.51
9062 10237 1.180029 GGTGACTCATGCAATTGCCT 58.820 50.000 26.94 15.36 41.18 4.75
9079 10254 8.109634 AGATTCATTGATAACAAGGTTACAGGT 58.890 33.333 0.00 0.00 39.46 4.00
9097 10272 3.529319 AGGGGGAGCTACAAAGATTCATT 59.471 43.478 0.00 0.00 0.00 2.57
9160 10335 9.100554 CTGCATAAAAGCATTCAATATGGAAAA 57.899 29.630 0.00 0.00 44.68 2.29
9164 10339 7.204604 TGTCTGCATAAAAGCATTCAATATGG 58.795 34.615 0.00 0.00 44.68 2.74
9165 10340 8.699749 CATGTCTGCATAAAAGCATTCAATATG 58.300 33.333 0.00 0.00 44.68 1.78
9166 10341 7.870954 CCATGTCTGCATAAAAGCATTCAATAT 59.129 33.333 0.00 0.00 44.68 1.28
9167 10342 7.068470 TCCATGTCTGCATAAAAGCATTCAATA 59.932 33.333 0.00 0.00 44.68 1.90
9168 10343 6.046593 CCATGTCTGCATAAAAGCATTCAAT 58.953 36.000 0.00 0.00 44.68 2.57
9281 10460 4.043812 AGGATTAATGCCCTGATAGCACAT 59.956 41.667 2.98 0.00 44.40 3.21
9316 10495 1.553690 CCTACCACCCACCACTGGAG 61.554 65.000 0.71 0.00 40.55 3.86
9345 10525 6.254281 ACCTGTAGTATTTGCACAAACATC 57.746 37.500 0.00 0.00 32.51 3.06
9389 10569 1.066152 CTCTCGCAGCTACAGTGCATA 59.934 52.381 0.00 0.00 41.26 3.14
9390 10570 0.179116 CTCTCGCAGCTACAGTGCAT 60.179 55.000 0.00 0.00 41.26 3.96
9391 10571 1.213799 CTCTCGCAGCTACAGTGCA 59.786 57.895 0.00 0.00 41.26 4.57
9392 10572 2.164026 GCTCTCGCAGCTACAGTGC 61.164 63.158 0.00 0.00 45.83 4.40
9393 10573 4.085302 GCTCTCGCAGCTACAGTG 57.915 61.111 0.00 0.00 45.83 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.