Multiple sequence alignment - TraesCS3B01G394200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G394200 chr3B 100.000 2678 0 0 1 2678 621296176 621298853 0.000000e+00 4946.0
1 TraesCS3B01G394200 chr3B 93.768 706 32 2 1 705 621247527 621248221 0.000000e+00 1050.0
2 TraesCS3B01G394200 chr3B 93.201 706 36 2 1 705 621279748 621280442 0.000000e+00 1027.0
3 TraesCS3B01G394200 chr3B 94.312 545 31 0 829 1373 621248223 621248767 0.000000e+00 835.0
4 TraesCS3B01G394200 chr3B 93.578 545 35 0 829 1373 621280444 621280988 0.000000e+00 813.0
5 TraesCS3B01G394200 chr3B 85.185 513 59 6 171 683 621218625 621219120 6.610000e-141 510.0
6 TraesCS3B01G394200 chr3B 84.456 193 27 3 1340 1530 817577751 817577942 1.270000e-43 187.0
7 TraesCS3B01G394200 chr3D 93.462 1560 61 14 683 2219 467318129 467319670 0.000000e+00 2278.0
8 TraesCS3B01G394200 chr3D 82.785 517 71 12 171 683 587709404 587708902 1.890000e-121 446.0
9 TraesCS3B01G394200 chr3D 82.779 511 66 14 176 683 32145145 32144654 1.140000e-118 436.0
10 TraesCS3B01G394200 chr3D 85.027 187 27 1 1345 1530 607923180 607923366 3.520000e-44 189.0
11 TraesCS3B01G394200 chr3D 84.737 190 10 7 1 171 375704599 375704410 3.540000e-39 172.0
12 TraesCS3B01G394200 chr3D 81.595 163 10 8 28 171 559752625 559752786 1.680000e-22 117.0
13 TraesCS3B01G394200 chr3A 90.150 1269 74 26 684 1944 609959162 609960387 0.000000e+00 1604.0
14 TraesCS3B01G394200 chr3A 86.214 515 53 11 171 684 432866038 432866535 2.350000e-150 542.0
15 TraesCS3B01G394200 chr3A 84.737 190 26 3 1343 1530 740113598 740113410 1.270000e-43 187.0
16 TraesCS3B01G394200 chr6D 83.559 517 65 13 171 683 362789886 362789386 1.450000e-127 466.0
17 TraesCS3B01G394200 chr6D 80.000 195 15 7 1 171 315995248 315995442 3.620000e-24 122.0
18 TraesCS3B01G394200 chr6D 79.259 135 25 3 2212 2344 156804602 156804735 1.020000e-14 91.6
19 TraesCS3B01G394200 chr4D 85.177 452 57 7 176 624 35657196 35657640 3.140000e-124 455.0
20 TraesCS3B01G394200 chr4D 80.220 182 25 7 1 171 12136434 12136253 2.800000e-25 126.0
21 TraesCS3B01G394200 chr1A 83.696 460 62 10 171 624 59843064 59842612 3.190000e-114 422.0
22 TraesCS3B01G394200 chr1A 85.185 162 24 0 1370 1531 451282034 451281873 1.650000e-37 167.0
23 TraesCS3B01G394200 chr2D 81.553 515 73 16 171 683 86531571 86531077 3.210000e-109 405.0
24 TraesCS3B01G394200 chr2D 78.807 486 61 31 2210 2676 376951341 376950879 3.370000e-74 289.0
25 TraesCS3B01G394200 chr2D 78.333 180 30 7 2216 2391 609883740 609883566 1.010000e-19 108.0
26 TraesCS3B01G394200 chr1D 86.133 375 32 13 2213 2568 471128750 471129123 1.160000e-103 387.0
27 TraesCS3B01G394200 chr1D 85.802 162 23 0 1370 1531 350259500 350259339 3.540000e-39 172.0
28 TraesCS3B01G394200 chr1D 82.888 187 15 6 1 171 209539154 209538969 4.620000e-33 152.0
29 TraesCS3B01G394200 chr7A 83.630 281 39 4 2218 2491 184026280 184026000 9.510000e-65 257.0
30 TraesCS3B01G394200 chr7A 79.389 131 24 3 2218 2346 603522208 603522079 3.670000e-14 89.8
31 TraesCS3B01G394200 chr4B 85.000 240 34 2 2232 2471 142421170 142420933 2.660000e-60 243.0
32 TraesCS3B01G394200 chr5B 80.309 259 45 5 2216 2470 680332634 680332378 9.790000e-45 191.0
33 TraesCS3B01G394200 chr5B 80.150 267 36 14 2213 2473 656718148 656717893 1.640000e-42 183.0
34 TraesCS3B01G394200 chr1B 86.420 162 22 0 1370 1531 472634246 472634407 7.620000e-41 178.0
35 TraesCS3B01G394200 chr1B 82.199 191 14 10 1 171 660689947 660689757 2.150000e-31 147.0
36 TraesCS3B01G394200 chr7B 81.579 190 16 9 1 171 145369128 145369317 3.590000e-29 139.0
37 TraesCS3B01G394200 chr2B 80.952 189 17 7 2 171 790462524 790462712 6.020000e-27 132.0
38 TraesCS3B01G394200 chrUn 100.000 43 0 0 129 171 22447529 22447487 2.210000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G394200 chr3B 621296176 621298853 2677 False 4946.0 4946 100.0000 1 2678 1 chr3B.!!$F2 2677
1 TraesCS3B01G394200 chr3B 621247527 621248767 1240 False 942.5 1050 94.0400 1 1373 2 chr3B.!!$F4 1372
2 TraesCS3B01G394200 chr3B 621279748 621280988 1240 False 920.0 1027 93.3895 1 1373 2 chr3B.!!$F5 1372
3 TraesCS3B01G394200 chr3D 467318129 467319670 1541 False 2278.0 2278 93.4620 683 2219 1 chr3D.!!$F1 1536
4 TraesCS3B01G394200 chr3D 587708902 587709404 502 True 446.0 446 82.7850 171 683 1 chr3D.!!$R3 512
5 TraesCS3B01G394200 chr3A 609959162 609960387 1225 False 1604.0 1604 90.1500 684 1944 1 chr3A.!!$F2 1260
6 TraesCS3B01G394200 chr6D 362789386 362789886 500 True 466.0 466 83.5590 171 683 1 chr6D.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 624 0.330604 ACCTCTGTCAATGCCATGCT 59.669 50.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2411 2448 0.036164 ACTGCCAACATTGACCGCTA 59.964 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.625853 AGCTTGAAAATAGAAGAGGCCC 58.374 45.455 0.00 0.00 0.00 5.80
25 26 3.268072 AGCTTGAAAATAGAAGAGGCCCT 59.732 43.478 0.00 0.00 0.00 5.19
41 43 4.383861 CTGCGCACTCCTCTGCCA 62.384 66.667 5.66 0.00 33.18 4.92
114 116 6.910433 ACACTTATTTTTGCTTGTCAGTAACG 59.090 34.615 0.00 0.00 0.00 3.18
211 213 1.906574 GTGACTCCACCCTATTCACCA 59.093 52.381 0.00 0.00 37.33 4.17
256 258 1.619332 GTCTCTGAAACCCCGTCTCTT 59.381 52.381 0.00 0.00 0.00 2.85
304 306 3.217681 AGGTTTTTGGGAAGCGACTAA 57.782 42.857 0.00 0.00 32.52 2.24
495 500 6.646267 TGCTGAAGGGTATAACTCGTTTATT 58.354 36.000 0.00 0.00 32.31 1.40
612 617 8.820933 CAGTATATGTGTTTACCTCTGTCAATG 58.179 37.037 0.00 0.00 0.00 2.82
613 618 6.683974 ATATGTGTTTACCTCTGTCAATGC 57.316 37.500 0.00 0.00 0.00 3.56
614 619 3.146066 TGTGTTTACCTCTGTCAATGCC 58.854 45.455 0.00 0.00 0.00 4.40
615 620 3.146066 GTGTTTACCTCTGTCAATGCCA 58.854 45.455 0.00 0.00 0.00 4.92
616 621 3.758554 GTGTTTACCTCTGTCAATGCCAT 59.241 43.478 0.00 0.00 0.00 4.40
617 622 3.758023 TGTTTACCTCTGTCAATGCCATG 59.242 43.478 0.00 0.00 0.00 3.66
618 623 2.042686 TACCTCTGTCAATGCCATGC 57.957 50.000 0.00 0.00 0.00 4.06
619 624 0.330604 ACCTCTGTCAATGCCATGCT 59.669 50.000 0.00 0.00 0.00 3.79
620 625 1.561076 ACCTCTGTCAATGCCATGCTA 59.439 47.619 0.00 0.00 0.00 3.49
621 626 2.219458 CCTCTGTCAATGCCATGCTAG 58.781 52.381 0.00 0.00 0.00 3.42
622 627 2.421107 CCTCTGTCAATGCCATGCTAGT 60.421 50.000 0.00 0.00 0.00 2.57
712 717 7.694388 AACTCAAAAATAAGCCTCGAAAAAC 57.306 32.000 0.00 0.00 0.00 2.43
715 720 6.212955 TCAAAAATAAGCCTCGAAAAACCAG 58.787 36.000 0.00 0.00 0.00 4.00
1596 1626 4.367023 CCCCGCTTCGACGTCCAA 62.367 66.667 10.58 2.03 0.00 3.53
1641 1671 2.502965 GAGCGGTTACTGCGCGTAC 61.503 63.158 10.75 0.00 37.44 3.67
1822 1853 2.685897 TCCACCCTGTCGTTTGAAAAAG 59.314 45.455 0.00 0.00 0.00 2.27
1826 1857 2.691011 CCCTGTCGTTTGAAAAAGGGAA 59.309 45.455 9.47 0.00 41.21 3.97
1867 1898 0.467290 TCAAAAGACCCTGGTGGCAC 60.467 55.000 9.70 9.70 37.83 5.01
1869 1900 0.032615 AAAAGACCCTGGTGGCACAA 60.033 50.000 20.82 7.38 44.16 3.33
1913 1944 5.049060 TCCATTTTCATACACCAAACTGACG 60.049 40.000 0.00 0.00 0.00 4.35
1946 1977 2.012673 CTGCCAGGCTAAGTTTGCTAG 58.987 52.381 14.15 2.55 0.00 3.42
1947 1978 1.351017 TGCCAGGCTAAGTTTGCTAGT 59.649 47.619 14.15 0.00 0.00 2.57
1955 1986 7.553044 CCAGGCTAAGTTTGCTAGTAATTAGTT 59.447 37.037 9.16 4.11 0.00 2.24
2110 2147 6.176975 TCAAAAGTTTATCAGTACATGGCG 57.823 37.500 0.00 0.00 0.00 5.69
2117 2154 6.430000 AGTTTATCAGTACATGGCGAAACTTT 59.570 34.615 0.00 0.00 34.56 2.66
2124 2161 4.846779 ACATGGCGAAACTTTGTAATGT 57.153 36.364 0.00 0.00 0.00 2.71
2158 2195 1.623542 GCGGTTGGGGAGATACTGGT 61.624 60.000 0.00 0.00 0.00 4.00
2164 2201 3.060479 TGGGGAGATACTGGTAGCAAT 57.940 47.619 0.00 0.00 0.00 3.56
2181 2218 3.056607 AGCAATTTTATGACCACACCAGC 60.057 43.478 0.00 0.00 0.00 4.85
2202 2239 3.126686 GCTTCTCTTCAGTTCATTGAGGC 59.873 47.826 0.00 0.00 0.00 4.70
2219 2256 3.181455 TGAGGCAGCTTCAGTTGTTTAGA 60.181 43.478 2.39 0.00 0.00 2.10
2220 2257 3.406764 AGGCAGCTTCAGTTGTTTAGAG 58.593 45.455 0.00 0.00 0.00 2.43
2221 2258 2.095516 GGCAGCTTCAGTTGTTTAGAGC 60.096 50.000 0.00 0.00 0.00 4.09
2222 2259 2.549754 GCAGCTTCAGTTGTTTAGAGCA 59.450 45.455 0.00 0.00 0.00 4.26
2223 2260 3.190118 GCAGCTTCAGTTGTTTAGAGCAT 59.810 43.478 0.00 0.00 0.00 3.79
2224 2261 4.671250 GCAGCTTCAGTTGTTTAGAGCATC 60.671 45.833 0.00 0.00 0.00 3.91
2238 2275 2.853705 GAGCATCTCTAGTAGACCCGT 58.146 52.381 0.00 0.00 36.93 5.28
2239 2276 4.005487 GAGCATCTCTAGTAGACCCGTA 57.995 50.000 0.00 0.00 36.93 4.02
2240 2277 4.581868 GAGCATCTCTAGTAGACCCGTAT 58.418 47.826 0.00 0.00 36.93 3.06
2241 2278 5.732633 GAGCATCTCTAGTAGACCCGTATA 58.267 45.833 0.00 0.00 36.93 1.47
2242 2279 6.124316 AGCATCTCTAGTAGACCCGTATAA 57.876 41.667 0.00 0.00 36.93 0.98
2243 2280 6.174760 AGCATCTCTAGTAGACCCGTATAAG 58.825 44.000 0.00 0.00 36.93 1.73
2244 2281 5.939296 GCATCTCTAGTAGACCCGTATAAGT 59.061 44.000 0.00 0.00 36.93 2.24
2245 2282 6.128227 GCATCTCTAGTAGACCCGTATAAGTG 60.128 46.154 0.00 0.00 36.93 3.16
2246 2283 5.862845 TCTCTAGTAGACCCGTATAAGTGG 58.137 45.833 0.00 0.00 0.00 4.00
2247 2284 5.367937 TCTCTAGTAGACCCGTATAAGTGGT 59.632 44.000 0.00 0.00 34.33 4.16
2253 2290 3.264947 GACCCGTATAAGTGGTCAAACC 58.735 50.000 16.02 0.00 46.29 3.27
2254 2291 2.026915 ACCCGTATAAGTGGTCAAACCC 60.027 50.000 0.00 0.00 37.50 4.11
2255 2292 2.273557 CCGTATAAGTGGTCAAACCCG 58.726 52.381 0.00 0.00 37.50 5.28
2256 2293 2.354003 CCGTATAAGTGGTCAAACCCGT 60.354 50.000 0.00 0.00 37.50 5.28
2257 2294 3.119173 CCGTATAAGTGGTCAAACCCGTA 60.119 47.826 0.00 0.00 37.50 4.02
2258 2295 4.493547 CGTATAAGTGGTCAAACCCGTAA 58.506 43.478 0.00 0.00 37.50 3.18
2259 2296 4.928615 CGTATAAGTGGTCAAACCCGTAAA 59.071 41.667 0.00 0.00 37.50 2.01
2260 2297 5.407995 CGTATAAGTGGTCAAACCCGTAAAA 59.592 40.000 0.00 0.00 37.50 1.52
2261 2298 6.092533 CGTATAAGTGGTCAAACCCGTAAAAT 59.907 38.462 0.00 0.00 37.50 1.82
2262 2299 7.277539 CGTATAAGTGGTCAAACCCGTAAAATA 59.722 37.037 0.00 0.00 37.50 1.40
2263 2300 7.999450 ATAAGTGGTCAAACCCGTAAAATAA 57.001 32.000 0.00 0.00 37.50 1.40
2264 2301 6.904463 AAGTGGTCAAACCCGTAAAATAAT 57.096 33.333 0.00 0.00 37.50 1.28
2265 2302 6.505044 AGTGGTCAAACCCGTAAAATAATC 57.495 37.500 0.00 0.00 37.50 1.75
2266 2303 6.005198 AGTGGTCAAACCCGTAAAATAATCA 58.995 36.000 0.00 0.00 37.50 2.57
2267 2304 6.072342 AGTGGTCAAACCCGTAAAATAATCAC 60.072 38.462 0.00 0.00 37.50 3.06
2268 2305 5.183522 TGGTCAAACCCGTAAAATAATCACC 59.816 40.000 0.00 0.00 37.50 4.02
2269 2306 5.416639 GGTCAAACCCGTAAAATAATCACCT 59.583 40.000 0.00 0.00 30.04 4.00
2270 2307 6.071784 GGTCAAACCCGTAAAATAATCACCTT 60.072 38.462 0.00 0.00 30.04 3.50
2271 2308 7.372714 GTCAAACCCGTAAAATAATCACCTTT 58.627 34.615 0.00 0.00 0.00 3.11
2272 2309 7.868922 GTCAAACCCGTAAAATAATCACCTTTT 59.131 33.333 0.00 0.00 0.00 2.27
2273 2310 9.075678 TCAAACCCGTAAAATAATCACCTTTTA 57.924 29.630 0.00 0.00 0.00 1.52
2274 2311 9.131416 CAAACCCGTAAAATAATCACCTTTTAC 57.869 33.333 7.51 7.51 41.28 2.01
2275 2312 7.999450 ACCCGTAAAATAATCACCTTTTACA 57.001 32.000 14.62 0.00 43.27 2.41
2276 2313 8.047413 ACCCGTAAAATAATCACCTTTTACAG 57.953 34.615 14.62 9.45 43.27 2.74
2277 2314 7.666804 ACCCGTAAAATAATCACCTTTTACAGT 59.333 33.333 14.62 9.90 43.27 3.55
2278 2315 8.517056 CCCGTAAAATAATCACCTTTTACAGTT 58.483 33.333 14.62 0.00 43.27 3.16
2279 2316 9.902196 CCGTAAAATAATCACCTTTTACAGTTT 57.098 29.630 14.62 0.00 43.27 2.66
2286 2323 9.715121 ATAATCACCTTTTACAGTTTTAGTCGA 57.285 29.630 0.00 0.00 0.00 4.20
2287 2324 6.833342 TCACCTTTTACAGTTTTAGTCGAC 57.167 37.500 7.70 7.70 0.00 4.20
2288 2325 6.339730 TCACCTTTTACAGTTTTAGTCGACA 58.660 36.000 19.50 0.48 0.00 4.35
2289 2326 6.817641 TCACCTTTTACAGTTTTAGTCGACAA 59.182 34.615 19.50 7.32 0.00 3.18
2290 2327 7.333921 TCACCTTTTACAGTTTTAGTCGACAAA 59.666 33.333 19.50 12.97 0.00 2.83
2291 2328 7.964011 CACCTTTTACAGTTTTAGTCGACAAAA 59.036 33.333 19.50 17.72 0.00 2.44
2292 2329 7.964559 ACCTTTTACAGTTTTAGTCGACAAAAC 59.035 33.333 29.07 29.07 43.20 2.43
2293 2330 7.163032 CCTTTTACAGTTTTAGTCGACAAAACG 59.837 37.037 29.32 26.64 45.96 3.60
2294 2331 4.525411 ACAGTTTTAGTCGACAAAACGG 57.475 40.909 30.18 30.18 45.96 4.44
2295 2332 4.183101 ACAGTTTTAGTCGACAAAACGGA 58.817 39.130 33.91 15.12 45.96 4.69
2296 2333 4.033243 ACAGTTTTAGTCGACAAAACGGAC 59.967 41.667 33.91 21.45 45.96 4.79
2297 2334 3.557185 AGTTTTAGTCGACAAAACGGACC 59.443 43.478 29.32 17.65 45.96 4.46
2298 2335 2.886862 TTAGTCGACAAAACGGACCA 57.113 45.000 19.50 0.00 0.00 4.02
2299 2336 2.886862 TAGTCGACAAAACGGACCAA 57.113 45.000 19.50 0.00 0.00 3.67
2300 2337 2.027003 AGTCGACAAAACGGACCAAA 57.973 45.000 19.50 0.00 0.00 3.28
2301 2338 2.358015 AGTCGACAAAACGGACCAAAA 58.642 42.857 19.50 0.00 0.00 2.44
2302 2339 2.096335 AGTCGACAAAACGGACCAAAAC 59.904 45.455 19.50 0.00 0.00 2.43
2303 2340 2.082231 TCGACAAAACGGACCAAAACA 58.918 42.857 0.00 0.00 0.00 2.83
2304 2341 2.096174 TCGACAAAACGGACCAAAACAG 59.904 45.455 0.00 0.00 0.00 3.16
2305 2342 2.096174 CGACAAAACGGACCAAAACAGA 59.904 45.455 0.00 0.00 0.00 3.41
2306 2343 3.431856 GACAAAACGGACCAAAACAGAC 58.568 45.455 0.00 0.00 0.00 3.51
2307 2344 2.164827 ACAAAACGGACCAAAACAGACC 59.835 45.455 0.00 0.00 0.00 3.85
2308 2345 1.395635 AAACGGACCAAAACAGACCC 58.604 50.000 0.00 0.00 0.00 4.46
2309 2346 0.549469 AACGGACCAAAACAGACCCT 59.451 50.000 0.00 0.00 0.00 4.34
2310 2347 0.549469 ACGGACCAAAACAGACCCTT 59.451 50.000 0.00 0.00 0.00 3.95
2311 2348 1.064240 ACGGACCAAAACAGACCCTTT 60.064 47.619 0.00 0.00 0.00 3.11
2312 2349 2.173143 ACGGACCAAAACAGACCCTTTA 59.827 45.455 0.00 0.00 0.00 1.85
2313 2350 3.215975 CGGACCAAAACAGACCCTTTAA 58.784 45.455 0.00 0.00 0.00 1.52
2314 2351 3.633065 CGGACCAAAACAGACCCTTTAAA 59.367 43.478 0.00 0.00 0.00 1.52
2315 2352 4.098196 CGGACCAAAACAGACCCTTTAAAA 59.902 41.667 0.00 0.00 0.00 1.52
2316 2353 5.221362 CGGACCAAAACAGACCCTTTAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
2317 2354 6.588204 GGACCAAAACAGACCCTTTAAAATT 58.412 36.000 0.00 0.00 0.00 1.82
2318 2355 6.481976 GGACCAAAACAGACCCTTTAAAATTG 59.518 38.462 0.00 0.00 0.00 2.32
2319 2356 6.953101 ACCAAAACAGACCCTTTAAAATTGT 58.047 32.000 0.00 0.00 0.00 2.71
2320 2357 7.045416 ACCAAAACAGACCCTTTAAAATTGTC 58.955 34.615 0.00 0.00 0.00 3.18
2321 2358 6.481976 CCAAAACAGACCCTTTAAAATTGTCC 59.518 38.462 7.45 0.00 0.00 4.02
2322 2359 5.447624 AACAGACCCTTTAAAATTGTCCG 57.552 39.130 7.45 2.23 0.00 4.79
2323 2360 4.721132 ACAGACCCTTTAAAATTGTCCGA 58.279 39.130 7.45 0.00 0.00 4.55
2324 2361 4.517832 ACAGACCCTTTAAAATTGTCCGAC 59.482 41.667 7.45 0.00 0.00 4.79
2325 2362 4.517453 CAGACCCTTTAAAATTGTCCGACA 59.483 41.667 0.00 0.00 0.00 4.35
2326 2363 4.517832 AGACCCTTTAAAATTGTCCGACAC 59.482 41.667 0.00 0.00 0.00 3.67
2327 2364 4.466827 ACCCTTTAAAATTGTCCGACACT 58.533 39.130 0.00 0.00 0.00 3.55
2328 2365 4.891168 ACCCTTTAAAATTGTCCGACACTT 59.109 37.500 0.00 0.00 0.00 3.16
2329 2366 5.361571 ACCCTTTAAAATTGTCCGACACTTT 59.638 36.000 10.26 10.26 33.25 2.66
2330 2367 6.546772 ACCCTTTAAAATTGTCCGACACTTTA 59.453 34.615 15.03 12.03 31.08 1.85
2331 2368 7.068470 ACCCTTTAAAATTGTCCGACACTTTAA 59.932 33.333 15.03 15.99 31.08 1.52
2332 2369 7.921745 CCCTTTAAAATTGTCCGACACTTTAAA 59.078 33.333 23.53 23.53 31.08 1.52
2333 2370 9.471084 CCTTTAAAATTGTCCGACACTTTAAAT 57.529 29.630 24.35 12.68 31.08 1.40
2343 2380 8.732531 TGTCCGACACTTTAAATTTTTATAGGG 58.267 33.333 0.00 2.45 33.22 3.53
2344 2381 7.699391 GTCCGACACTTTAAATTTTTATAGGGC 59.301 37.037 0.00 0.00 31.06 5.19
2345 2382 6.976349 CCGACACTTTAAATTTTTATAGGGCC 59.024 38.462 0.00 0.00 31.06 5.80
2346 2383 6.976349 CGACACTTTAAATTTTTATAGGGCCC 59.024 38.462 16.46 16.46 31.06 5.80
2347 2384 7.147966 CGACACTTTAAATTTTTATAGGGCCCT 60.148 37.037 31.35 31.35 31.06 5.19
2348 2385 7.847096 ACACTTTAAATTTTTATAGGGCCCTG 58.153 34.615 35.81 14.54 31.06 4.45
2349 2386 7.456585 ACACTTTAAATTTTTATAGGGCCCTGT 59.543 33.333 35.81 30.73 31.06 4.00
2350 2387 7.763985 CACTTTAAATTTTTATAGGGCCCTGTG 59.236 37.037 35.81 22.72 0.00 3.66
2351 2388 7.456585 ACTTTAAATTTTTATAGGGCCCTGTGT 59.543 33.333 35.81 21.68 0.00 3.72
2352 2389 8.896722 TTTAAATTTTTATAGGGCCCTGTGTA 57.103 30.769 35.81 20.59 0.00 2.90
2353 2390 6.785337 AAATTTTTATAGGGCCCTGTGTAC 57.215 37.500 35.81 0.00 0.00 2.90
2354 2391 4.931027 TTTTTATAGGGCCCTGTGTACA 57.069 40.909 35.81 14.26 0.00 2.90
2355 2392 3.918294 TTTATAGGGCCCTGTGTACAC 57.082 47.619 35.81 19.36 0.00 2.90
2356 2393 2.553911 TATAGGGCCCTGTGTACACA 57.446 50.000 35.81 26.37 39.32 3.72
2357 2394 1.663911 ATAGGGCCCTGTGTACACAA 58.336 50.000 35.81 11.62 41.33 3.33
2358 2395 1.436326 TAGGGCCCTGTGTACACAAA 58.564 50.000 35.81 7.08 41.33 2.83
2359 2396 0.179001 AGGGCCCTGTGTACACAAAC 60.179 55.000 28.05 19.07 41.33 2.93
2360 2397 1.176619 GGGCCCTGTGTACACAAACC 61.177 60.000 27.66 25.41 41.33 3.27
2361 2398 1.176619 GGCCCTGTGTACACAAACCC 61.177 60.000 27.66 21.86 41.33 4.11
2362 2399 1.512156 GCCCTGTGTACACAAACCCG 61.512 60.000 27.66 16.16 41.33 5.28
2363 2400 0.107081 CCCTGTGTACACAAACCCGA 59.893 55.000 27.66 5.02 41.33 5.14
2364 2401 1.508632 CCTGTGTACACAAACCCGAG 58.491 55.000 27.66 14.81 41.33 4.63
2365 2402 1.069513 CCTGTGTACACAAACCCGAGA 59.930 52.381 27.66 3.56 41.33 4.04
2366 2403 2.132762 CTGTGTACACAAACCCGAGAC 58.867 52.381 27.66 0.00 41.33 3.36
2367 2404 1.202557 TGTGTACACAAACCCGAGACC 60.203 52.381 26.07 0.00 38.56 3.85
2368 2405 0.393820 TGTACACAAACCCGAGACCC 59.606 55.000 0.00 0.00 0.00 4.46
2369 2406 0.683412 GTACACAAACCCGAGACCCT 59.317 55.000 0.00 0.00 0.00 4.34
2370 2407 0.971386 TACACAAACCCGAGACCCTC 59.029 55.000 0.00 0.00 0.00 4.30
2371 2408 1.052124 ACACAAACCCGAGACCCTCA 61.052 55.000 0.00 0.00 0.00 3.86
2372 2409 0.324943 CACAAACCCGAGACCCTCAT 59.675 55.000 0.00 0.00 0.00 2.90
2373 2410 1.553248 CACAAACCCGAGACCCTCATA 59.447 52.381 0.00 0.00 0.00 2.15
2374 2411 2.170607 CACAAACCCGAGACCCTCATAT 59.829 50.000 0.00 0.00 0.00 1.78
2375 2412 2.434702 ACAAACCCGAGACCCTCATATC 59.565 50.000 0.00 0.00 0.00 1.63
2376 2413 2.700897 CAAACCCGAGACCCTCATATCT 59.299 50.000 0.00 0.00 0.00 1.98
2377 2414 2.777459 ACCCGAGACCCTCATATCTT 57.223 50.000 0.00 0.00 0.00 2.40
2378 2415 2.599677 ACCCGAGACCCTCATATCTTC 58.400 52.381 0.00 0.00 0.00 2.87
2379 2416 2.091278 ACCCGAGACCCTCATATCTTCA 60.091 50.000 0.00 0.00 0.00 3.02
2380 2417 2.560542 CCCGAGACCCTCATATCTTCAG 59.439 54.545 0.00 0.00 0.00 3.02
2381 2418 3.226777 CCGAGACCCTCATATCTTCAGT 58.773 50.000 0.00 0.00 0.00 3.41
2382 2419 3.639094 CCGAGACCCTCATATCTTCAGTT 59.361 47.826 0.00 0.00 0.00 3.16
2383 2420 4.100189 CCGAGACCCTCATATCTTCAGTTT 59.900 45.833 0.00 0.00 0.00 2.66
2384 2421 5.395768 CCGAGACCCTCATATCTTCAGTTTT 60.396 44.000 0.00 0.00 0.00 2.43
2385 2422 5.521735 CGAGACCCTCATATCTTCAGTTTTG 59.478 44.000 0.00 0.00 0.00 2.44
2386 2423 6.627087 AGACCCTCATATCTTCAGTTTTGA 57.373 37.500 0.00 0.00 0.00 2.69
2387 2424 7.020827 AGACCCTCATATCTTCAGTTTTGAA 57.979 36.000 0.00 0.00 40.92 2.69
2398 2435 5.482686 TTCAGTTTTGAAGGCAATTTTGC 57.517 34.783 6.74 6.74 44.37 3.68
2408 2445 3.220447 CAATTTTGCCAGTGCCCTG 57.780 52.632 0.00 0.00 38.50 4.45
2409 2446 0.680618 CAATTTTGCCAGTGCCCTGA 59.319 50.000 0.00 0.00 41.50 3.86
2410 2447 1.070445 CAATTTTGCCAGTGCCCTGAA 59.930 47.619 0.00 0.00 41.50 3.02
2411 2448 1.648116 ATTTTGCCAGTGCCCTGAAT 58.352 45.000 0.00 0.00 41.50 2.57
2412 2449 2.300956 TTTTGCCAGTGCCCTGAATA 57.699 45.000 0.00 0.00 41.50 1.75
2413 2450 1.838112 TTTGCCAGTGCCCTGAATAG 58.162 50.000 0.00 0.00 41.50 1.73
2414 2451 0.680921 TTGCCAGTGCCCTGAATAGC 60.681 55.000 0.00 0.00 41.50 2.97
2415 2452 2.182842 GCCAGTGCCCTGAATAGCG 61.183 63.158 0.00 0.00 41.50 4.26
2416 2453 1.524621 CCAGTGCCCTGAATAGCGG 60.525 63.158 0.00 0.00 41.50 5.52
2417 2454 1.221840 CAGTGCCCTGAATAGCGGT 59.778 57.895 0.00 0.00 41.50 5.68
2418 2455 0.811616 CAGTGCCCTGAATAGCGGTC 60.812 60.000 0.00 0.00 41.50 4.79
2419 2456 1.220749 GTGCCCTGAATAGCGGTCA 59.779 57.895 0.00 0.00 0.00 4.02
2420 2457 0.392461 GTGCCCTGAATAGCGGTCAA 60.392 55.000 0.00 0.00 0.00 3.18
2421 2458 0.546122 TGCCCTGAATAGCGGTCAAT 59.454 50.000 0.00 0.00 0.00 2.57
2422 2459 0.947244 GCCCTGAATAGCGGTCAATG 59.053 55.000 0.00 0.00 0.00 2.82
2423 2460 1.747206 GCCCTGAATAGCGGTCAATGT 60.747 52.381 0.00 0.00 0.00 2.71
2424 2461 2.643551 CCCTGAATAGCGGTCAATGTT 58.356 47.619 0.00 0.00 0.00 2.71
2425 2462 2.355756 CCCTGAATAGCGGTCAATGTTG 59.644 50.000 0.00 0.00 0.00 3.33
2426 2463 2.355756 CCTGAATAGCGGTCAATGTTGG 59.644 50.000 0.00 0.00 0.00 3.77
2427 2464 1.742831 TGAATAGCGGTCAATGTTGGC 59.257 47.619 0.00 0.00 0.00 4.52
2428 2465 1.742831 GAATAGCGGTCAATGTTGGCA 59.257 47.619 0.00 0.00 33.59 4.92
2429 2466 1.382522 ATAGCGGTCAATGTTGGCAG 58.617 50.000 0.00 0.00 33.59 4.85
2430 2467 0.036164 TAGCGGTCAATGTTGGCAGT 59.964 50.000 0.00 0.00 33.59 4.40
2431 2468 0.823356 AGCGGTCAATGTTGGCAGTT 60.823 50.000 0.00 0.00 33.59 3.16
2432 2469 0.664166 GCGGTCAATGTTGGCAGTTG 60.664 55.000 0.00 0.00 33.59 3.16
2433 2470 0.950836 CGGTCAATGTTGGCAGTTGA 59.049 50.000 7.63 7.63 33.59 3.18
2434 2471 1.069022 CGGTCAATGTTGGCAGTTGAG 60.069 52.381 10.88 0.48 33.59 3.02
2435 2472 1.270550 GGTCAATGTTGGCAGTTGAGG 59.729 52.381 10.88 0.00 33.59 3.86
2436 2473 2.229792 GTCAATGTTGGCAGTTGAGGA 58.770 47.619 10.88 0.00 32.98 3.71
2437 2474 2.622942 GTCAATGTTGGCAGTTGAGGAA 59.377 45.455 10.88 0.00 32.98 3.36
2438 2475 3.256631 GTCAATGTTGGCAGTTGAGGAAT 59.743 43.478 10.88 0.00 32.98 3.01
2439 2476 3.507233 TCAATGTTGGCAGTTGAGGAATC 59.493 43.478 7.63 0.00 0.00 2.52
2440 2477 2.957402 TGTTGGCAGTTGAGGAATCT 57.043 45.000 0.00 0.00 0.00 2.40
2441 2478 2.783135 TGTTGGCAGTTGAGGAATCTC 58.217 47.619 0.00 0.00 40.36 2.75
2450 2487 0.176680 TGAGGAATCTCAGCTTCCGC 59.823 55.000 4.18 4.18 45.63 5.54
2451 2488 0.176680 GAGGAATCTCAGCTTCCGCA 59.823 55.000 6.18 0.00 45.63 5.69
2452 2489 0.615331 AGGAATCTCAGCTTCCGCAA 59.385 50.000 1.50 0.00 45.63 4.85
2453 2490 1.003580 AGGAATCTCAGCTTCCGCAAA 59.996 47.619 1.50 0.00 45.63 3.68
2454 2491 1.131315 GGAATCTCAGCTTCCGCAAAC 59.869 52.381 0.00 0.00 39.10 2.93
2455 2492 1.806542 GAATCTCAGCTTCCGCAAACA 59.193 47.619 0.00 0.00 39.10 2.83
2456 2493 1.160137 ATCTCAGCTTCCGCAAACAC 58.840 50.000 0.00 0.00 39.10 3.32
2457 2494 0.884704 TCTCAGCTTCCGCAAACACC 60.885 55.000 0.00 0.00 39.10 4.16
2458 2495 0.886490 CTCAGCTTCCGCAAACACCT 60.886 55.000 0.00 0.00 39.10 4.00
2459 2496 0.465460 TCAGCTTCCGCAAACACCTT 60.465 50.000 0.00 0.00 39.10 3.50
2460 2497 0.318107 CAGCTTCCGCAAACACCTTG 60.318 55.000 0.00 0.00 39.10 3.61
2461 2498 0.465460 AGCTTCCGCAAACACCTTGA 60.465 50.000 0.00 0.00 37.17 3.02
2462 2499 0.383949 GCTTCCGCAAACACCTTGAA 59.616 50.000 0.00 0.00 37.17 2.69
2463 2500 1.600413 GCTTCCGCAAACACCTTGAAG 60.600 52.381 0.00 0.00 37.17 3.02
2464 2501 0.383949 TTCCGCAAACACCTTGAAGC 59.616 50.000 0.00 0.00 37.17 3.86
2465 2502 0.465460 TCCGCAAACACCTTGAAGCT 60.465 50.000 0.00 0.00 37.17 3.74
2466 2503 0.040067 CCGCAAACACCTTGAAGCTC 60.040 55.000 0.00 0.00 37.17 4.09
2467 2504 0.384725 CGCAAACACCTTGAAGCTCG 60.385 55.000 0.00 0.00 37.17 5.03
2468 2505 0.661483 GCAAACACCTTGAAGCTCGC 60.661 55.000 0.00 0.00 37.17 5.03
2469 2506 0.040067 CAAACACCTTGAAGCTCGCC 60.040 55.000 0.00 0.00 37.17 5.54
2470 2507 1.507141 AAACACCTTGAAGCTCGCCG 61.507 55.000 0.00 0.00 0.00 6.46
2471 2508 3.793144 CACCTTGAAGCTCGCCGC 61.793 66.667 0.00 0.00 39.57 6.53
2473 2510 4.767255 CCTTGAAGCTCGCCGCCT 62.767 66.667 0.00 0.00 40.39 5.52
2474 2511 2.184322 CTTGAAGCTCGCCGCCTA 59.816 61.111 0.00 0.00 40.39 3.93
2475 2512 2.125673 TTGAAGCTCGCCGCCTAC 60.126 61.111 0.00 0.00 40.39 3.18
2476 2513 2.835701 CTTGAAGCTCGCCGCCTACA 62.836 60.000 0.00 0.00 40.39 2.74
2477 2514 2.125673 GAAGCTCGCCGCCTACAA 60.126 61.111 0.00 0.00 40.39 2.41
2478 2515 2.434359 AAGCTCGCCGCCTACAAC 60.434 61.111 0.00 0.00 40.39 3.32
2479 2516 4.796231 AGCTCGCCGCCTACAACG 62.796 66.667 0.00 0.00 40.39 4.10
2480 2517 4.789075 GCTCGCCGCCTACAACGA 62.789 66.667 0.00 0.00 0.00 3.85
2481 2518 2.879462 CTCGCCGCCTACAACGAC 60.879 66.667 0.00 0.00 0.00 4.34
2482 2519 4.424566 TCGCCGCCTACAACGACC 62.425 66.667 0.00 0.00 0.00 4.79
2485 2522 4.728102 CCGCCTACAACGACCGCA 62.728 66.667 0.00 0.00 0.00 5.69
2486 2523 3.475774 CGCCTACAACGACCGCAC 61.476 66.667 0.00 0.00 0.00 5.34
2487 2524 3.116531 GCCTACAACGACCGCACC 61.117 66.667 0.00 0.00 0.00 5.01
2488 2525 2.807895 CCTACAACGACCGCACCG 60.808 66.667 0.00 0.00 0.00 4.94
2489 2526 3.475774 CTACAACGACCGCACCGC 61.476 66.667 0.00 0.00 0.00 5.68
2530 2567 4.271816 GCCGCGCTAGCTAGCTGA 62.272 66.667 36.02 10.27 46.85 4.26
2531 2568 2.413351 CCGCGCTAGCTAGCTGAA 59.587 61.111 36.02 7.31 46.85 3.02
2532 2569 1.006805 CCGCGCTAGCTAGCTGAAT 60.007 57.895 36.02 3.12 46.85 2.57
2533 2570 1.006314 CCGCGCTAGCTAGCTGAATC 61.006 60.000 36.02 20.84 46.85 2.52
2534 2571 1.333584 CGCGCTAGCTAGCTGAATCG 61.334 60.000 36.02 26.36 46.85 3.34
2535 2572 0.039978 GCGCTAGCTAGCTGAATCGA 60.040 55.000 36.02 4.87 46.85 3.59
2536 2573 1.402194 GCGCTAGCTAGCTGAATCGAT 60.402 52.381 36.02 0.22 46.85 3.59
2537 2574 2.249337 CGCTAGCTAGCTGAATCGATG 58.751 52.381 36.02 18.08 46.85 3.84
2538 2575 1.991965 GCTAGCTAGCTGAATCGATGC 59.008 52.381 33.71 13.18 45.62 3.91
2539 2576 2.249337 CTAGCTAGCTGAATCGATGCG 58.751 52.381 27.68 0.00 0.00 4.73
2540 2577 0.670706 AGCTAGCTGAATCGATGCGA 59.329 50.000 18.57 0.00 41.13 5.10
2541 2578 1.059173 GCTAGCTGAATCGATGCGAG 58.941 55.000 7.70 10.65 39.91 5.03
2542 2579 1.601663 GCTAGCTGAATCGATGCGAGT 60.602 52.381 7.70 0.00 39.91 4.18
2543 2580 2.350868 GCTAGCTGAATCGATGCGAGTA 60.351 50.000 7.70 0.00 39.91 2.59
2544 2581 2.871182 AGCTGAATCGATGCGAGTAA 57.129 45.000 0.00 0.00 39.91 2.24
2545 2582 2.736978 AGCTGAATCGATGCGAGTAAG 58.263 47.619 0.00 0.00 39.91 2.34
2547 2584 2.736978 CTGAATCGATGCGAGTAAGCT 58.263 47.619 0.00 0.00 39.91 3.74
2548 2585 3.890128 CTGAATCGATGCGAGTAAGCTA 58.110 45.455 0.00 0.00 39.91 3.32
2549 2586 3.890128 TGAATCGATGCGAGTAAGCTAG 58.110 45.455 0.00 0.00 39.91 3.42
2550 2587 2.339728 ATCGATGCGAGTAAGCTAGC 57.660 50.000 6.62 6.62 39.91 3.42
2551 2588 1.309950 TCGATGCGAGTAAGCTAGCT 58.690 50.000 12.68 12.68 42.66 3.32
2552 2589 2.490991 TCGATGCGAGTAAGCTAGCTA 58.509 47.619 19.70 0.00 42.66 3.32
2553 2590 2.480802 TCGATGCGAGTAAGCTAGCTAG 59.519 50.000 19.70 16.84 42.66 3.42
2554 2591 6.436671 ATCGATGCGAGTAAGCTAGCTAGC 62.437 50.000 33.96 33.96 43.84 3.42
2578 2615 3.903502 GATGAATCGATGCGATGCTAG 57.096 47.619 0.00 0.00 46.30 3.42
2579 2616 1.422388 TGAATCGATGCGATGCTAGC 58.578 50.000 8.10 8.10 46.30 3.42
2580 2617 1.000171 TGAATCGATGCGATGCTAGCT 60.000 47.619 17.23 0.83 46.30 3.32
2581 2618 2.228822 TGAATCGATGCGATGCTAGCTA 59.771 45.455 17.23 2.58 46.30 3.32
2582 2619 2.558265 ATCGATGCGATGCTAGCTAG 57.442 50.000 16.84 16.84 45.24 3.42
2583 2620 1.468908 ATCGATGCGATGCTAGCTAGC 60.469 52.381 34.20 34.20 45.24 3.42
2584 2621 3.778114 ATCGATGCGATGCTAGCTAGCT 61.778 50.000 38.07 26.48 45.24 3.32
2585 2622 4.485743 ATCGATGCGATGCTAGCTAGCTA 61.486 47.826 38.07 27.10 45.24 3.32
2586 2623 6.265744 ATCGATGCGATGCTAGCTAGCTAG 62.266 50.000 37.09 37.09 45.24 3.42
2603 2640 3.341848 GCTAGCTAGCTACGGCGA 58.658 61.111 33.71 1.02 45.62 5.54
2604 2641 1.653115 GCTAGCTAGCTACGGCGAA 59.347 57.895 33.71 0.23 45.62 4.70
2605 2642 0.660891 GCTAGCTAGCTACGGCGAAC 60.661 60.000 33.71 5.30 45.62 3.95
2606 2643 0.040246 CTAGCTAGCTACGGCGAACC 60.040 60.000 20.67 0.00 44.37 3.62
2616 2653 3.338676 GGCGAACCGGATCGATGC 61.339 66.667 34.77 18.40 45.48 3.91
2617 2654 3.692367 GCGAACCGGATCGATGCG 61.692 66.667 34.77 29.59 45.48 4.73
2618 2655 2.025584 CGAACCGGATCGATGCGA 59.974 61.111 36.35 0.00 45.48 5.10
2619 2656 2.011349 CGAACCGGATCGATGCGAG 61.011 63.158 36.35 27.40 45.48 5.03
2620 2657 2.279517 AACCGGATCGATGCGAGC 60.280 61.111 36.35 6.69 44.78 5.03
2621 2658 2.954020 GAACCGGATCGATGCGAGCA 62.954 60.000 36.35 0.00 44.41 4.26
2622 2659 2.279451 CCGGATCGATGCGAGCAA 60.279 61.111 36.35 0.00 44.41 3.91
2623 2660 2.305853 CCGGATCGATGCGAGCAAG 61.306 63.158 36.35 18.02 44.41 4.01
2624 2661 2.934428 GGATCGATGCGAGCAAGC 59.066 61.111 0.54 0.00 44.41 4.01
2625 2662 1.593750 GGATCGATGCGAGCAAGCT 60.594 57.895 0.54 0.00 44.41 3.74
2626 2663 0.319040 GGATCGATGCGAGCAAGCTA 60.319 55.000 0.54 0.00 44.41 3.32
2627 2664 1.059173 GATCGATGCGAGCAAGCTAG 58.941 55.000 0.54 0.00 42.09 3.42
2628 2665 0.943359 ATCGATGCGAGCAAGCTAGC 60.943 55.000 18.37 18.37 43.42 3.42
2630 2667 0.318191 CGATGCGAGCAAGCTAGCTA 60.318 55.000 19.70 13.15 46.75 3.32
2631 2668 1.417372 GATGCGAGCAAGCTAGCTAG 58.583 55.000 19.70 16.84 46.75 3.42
2666 2703 4.760047 GCGTGTCGTGGCCATCCT 62.760 66.667 9.72 0.00 0.00 3.24
2667 2704 2.815211 CGTGTCGTGGCCATCCTG 60.815 66.667 9.72 0.00 0.00 3.86
2668 2705 3.127533 GTGTCGTGGCCATCCTGC 61.128 66.667 9.72 0.00 0.00 4.85
2669 2706 4.758251 TGTCGTGGCCATCCTGCG 62.758 66.667 9.72 7.70 34.51 5.18
2670 2707 4.760047 GTCGTGGCCATCCTGCGT 62.760 66.667 9.72 0.00 34.70 5.24
2671 2708 4.451150 TCGTGGCCATCCTGCGTC 62.451 66.667 9.72 0.00 34.70 5.19
2672 2709 4.457496 CGTGGCCATCCTGCGTCT 62.457 66.667 9.72 0.00 0.00 4.18
2673 2710 2.045926 GTGGCCATCCTGCGTCTT 60.046 61.111 9.72 0.00 0.00 3.01
2674 2711 2.109126 GTGGCCATCCTGCGTCTTC 61.109 63.158 9.72 0.00 0.00 2.87
2675 2712 2.892425 GGCCATCCTGCGTCTTCG 60.892 66.667 0.00 0.00 40.37 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.383861 TGGCAGAGGAGTGCGCAG 62.384 66.667 12.22 0.00 45.00 5.18
25 26 4.687215 GTGGCAGAGGAGTGCGCA 62.687 66.667 5.66 5.66 45.00 6.09
37 39 4.408821 GTGATGAGGCGGGTGGCA 62.409 66.667 0.00 0.00 46.16 4.92
41 43 4.129737 CGTCGTGATGAGGCGGGT 62.130 66.667 0.00 0.00 0.00 5.28
114 116 0.391793 GCCCAGCTGTCAGTAACTCC 60.392 60.000 13.81 0.00 0.00 3.85
203 205 1.255882 ACCCGTGTACGTGGTGAATA 58.744 50.000 14.00 0.00 39.95 1.75
211 213 3.673484 CCCGTCACCCGTGTACGT 61.673 66.667 14.31 0.00 37.74 3.57
256 258 2.123597 CCCCCGTACAGGATCCGA 60.124 66.667 5.98 0.00 45.00 4.55
317 319 4.380973 CGTAGAGGAAGCAGATGAACAGAA 60.381 45.833 0.00 0.00 0.00 3.02
431 436 3.788766 CGGCGGTTGTAGCAGCAC 61.789 66.667 0.00 0.00 36.08 4.40
495 500 3.126001 ACAGAAATCAACAGGAGCGAA 57.874 42.857 0.00 0.00 0.00 4.70
612 617 0.535780 TAGCATGGCACTAGCATGGC 60.536 55.000 10.44 5.65 44.61 4.40
613 618 1.202734 ACTAGCATGGCACTAGCATGG 60.203 52.381 11.01 3.88 44.61 3.66
614 619 1.871676 CACTAGCATGGCACTAGCATG 59.128 52.381 11.01 4.87 44.61 4.06
615 620 1.764723 TCACTAGCATGGCACTAGCAT 59.235 47.619 11.01 0.65 44.61 3.79
616 621 1.194218 TCACTAGCATGGCACTAGCA 58.806 50.000 11.01 0.00 44.61 3.49
617 622 2.540265 ATCACTAGCATGGCACTAGC 57.460 50.000 11.01 6.23 40.70 3.42
618 623 6.707608 TGAATAAATCACTAGCATGGCACTAG 59.292 38.462 9.84 9.84 42.37 2.57
619 624 6.591001 TGAATAAATCACTAGCATGGCACTA 58.409 36.000 0.00 0.00 31.50 2.74
620 625 5.439721 TGAATAAATCACTAGCATGGCACT 58.560 37.500 0.00 0.00 31.50 4.40
621 626 5.756195 TGAATAAATCACTAGCATGGCAC 57.244 39.130 0.00 0.00 31.50 5.01
712 717 3.414700 GACAAGTGGCGCGACTGG 61.415 66.667 26.18 24.87 0.00 4.00
1215 1230 2.525629 TGGAGGAAGCCGGTGTCA 60.526 61.111 1.90 0.00 0.00 3.58
1284 1302 2.617538 TCCCCCTCCTCCTCGTCT 60.618 66.667 0.00 0.00 0.00 4.18
1410 1440 3.708220 CTTCTCGCCGAGGTGCTCC 62.708 68.421 15.08 0.00 0.00 4.70
1596 1626 1.215647 GGAGTCTTGATGCGGTCGT 59.784 57.895 0.00 0.00 0.00 4.34
1641 1671 3.793559 CTTCTGGTAGGAAACATACGGG 58.206 50.000 0.00 0.00 0.00 5.28
1822 1853 5.221244 GGCAGTACATGTATTGGAAATTCCC 60.221 44.000 24.63 14.13 35.03 3.97
1826 1857 6.128486 TGATGGCAGTACATGTATTGGAAAT 58.872 36.000 24.63 9.28 0.00 2.17
1867 1898 4.582701 TTGTACCTGTGCCTGAAATTTG 57.417 40.909 0.00 0.00 0.00 2.32
1869 1900 3.763897 GGATTGTACCTGTGCCTGAAATT 59.236 43.478 0.00 0.00 0.00 1.82
1946 1977 7.148457 GGTGGAGTAGAAGTGCAAACTAATTAC 60.148 40.741 0.00 0.00 0.00 1.89
1947 1978 6.877322 GGTGGAGTAGAAGTGCAAACTAATTA 59.123 38.462 0.00 0.00 0.00 1.40
1955 1986 2.563179 GAGAGGTGGAGTAGAAGTGCAA 59.437 50.000 0.00 0.00 0.00 4.08
2047 2084 2.005451 CACTCTGGCAGACATACAAGC 58.995 52.381 14.43 0.00 0.00 4.01
2110 2147 8.911247 ACTGAAAACAGACATTACAAAGTTTC 57.089 30.769 0.00 0.00 0.00 2.78
2117 2154 6.348132 CCGCATTACTGAAAACAGACATTACA 60.348 38.462 0.00 0.00 0.00 2.41
2124 2161 3.252215 CCAACCGCATTACTGAAAACAGA 59.748 43.478 0.00 0.00 0.00 3.41
2158 2195 4.157656 GCTGGTGTGGTCATAAAATTGCTA 59.842 41.667 0.00 0.00 0.00 3.49
2164 2201 4.072131 GAGAAGCTGGTGTGGTCATAAAA 58.928 43.478 0.00 0.00 0.00 1.52
2181 2218 4.321718 TGCCTCAATGAACTGAAGAGAAG 58.678 43.478 0.00 0.00 0.00 2.85
2202 2239 4.694509 AGATGCTCTAAACAACTGAAGCTG 59.305 41.667 0.00 0.00 0.00 4.24
2219 2256 4.644163 ATACGGGTCTACTAGAGATGCT 57.356 45.455 0.00 0.00 36.29 3.79
2220 2257 5.939296 ACTTATACGGGTCTACTAGAGATGC 59.061 44.000 0.00 0.00 36.29 3.91
2221 2258 6.372103 CCACTTATACGGGTCTACTAGAGATG 59.628 46.154 0.00 0.00 36.29 2.90
2222 2259 6.044171 ACCACTTATACGGGTCTACTAGAGAT 59.956 42.308 0.00 0.00 36.29 2.75
2223 2260 5.367937 ACCACTTATACGGGTCTACTAGAGA 59.632 44.000 0.00 0.00 0.00 3.10
2224 2261 5.619220 ACCACTTATACGGGTCTACTAGAG 58.381 45.833 0.00 0.00 0.00 2.43
2225 2262 5.615289 GACCACTTATACGGGTCTACTAGA 58.385 45.833 0.00 0.00 45.99 2.43
2226 2263 5.938438 GACCACTTATACGGGTCTACTAG 57.062 47.826 0.00 0.00 45.99 2.57
2233 2270 2.026915 GGGTTTGACCACTTATACGGGT 60.027 50.000 0.00 0.00 41.02 5.28
2234 2271 2.635714 GGGTTTGACCACTTATACGGG 58.364 52.381 0.00 0.00 41.02 5.28
2235 2272 2.273557 CGGGTTTGACCACTTATACGG 58.726 52.381 0.00 0.00 41.02 4.02
2236 2273 2.963432 ACGGGTTTGACCACTTATACG 58.037 47.619 0.00 0.00 41.02 3.06
2237 2274 6.799926 TTTTACGGGTTTGACCACTTATAC 57.200 37.500 0.00 0.00 41.02 1.47
2238 2275 9.683870 ATTATTTTACGGGTTTGACCACTTATA 57.316 29.630 0.00 0.00 41.02 0.98
2239 2276 7.999450 TTATTTTACGGGTTTGACCACTTAT 57.001 32.000 0.00 0.00 41.02 1.73
2240 2277 7.664731 TGATTATTTTACGGGTTTGACCACTTA 59.335 33.333 0.00 0.00 41.02 2.24
2241 2278 6.490721 TGATTATTTTACGGGTTTGACCACTT 59.509 34.615 0.00 0.00 41.02 3.16
2242 2279 6.005198 TGATTATTTTACGGGTTTGACCACT 58.995 36.000 0.00 0.00 41.02 4.00
2243 2280 6.088173 GTGATTATTTTACGGGTTTGACCAC 58.912 40.000 0.00 0.00 41.02 4.16
2244 2281 5.183522 GGTGATTATTTTACGGGTTTGACCA 59.816 40.000 0.00 0.00 41.02 4.02
2245 2282 5.416639 AGGTGATTATTTTACGGGTTTGACC 59.583 40.000 0.00 0.00 37.60 4.02
2246 2283 6.505044 AGGTGATTATTTTACGGGTTTGAC 57.495 37.500 0.00 0.00 0.00 3.18
2247 2284 7.527568 AAAGGTGATTATTTTACGGGTTTGA 57.472 32.000 0.00 0.00 0.00 2.69
2248 2285 9.131416 GTAAAAGGTGATTATTTTACGGGTTTG 57.869 33.333 5.19 0.00 40.22 2.93
2260 2297 9.715121 TCGACTAAAACTGTAAAAGGTGATTAT 57.285 29.630 0.00 0.00 0.00 1.28
2261 2298 8.981647 GTCGACTAAAACTGTAAAAGGTGATTA 58.018 33.333 8.70 0.00 0.00 1.75
2262 2299 7.496591 TGTCGACTAAAACTGTAAAAGGTGATT 59.503 33.333 17.92 0.00 0.00 2.57
2263 2300 6.987992 TGTCGACTAAAACTGTAAAAGGTGAT 59.012 34.615 17.92 0.00 0.00 3.06
2264 2301 6.339730 TGTCGACTAAAACTGTAAAAGGTGA 58.660 36.000 17.92 0.00 0.00 4.02
2265 2302 6.592798 TGTCGACTAAAACTGTAAAAGGTG 57.407 37.500 17.92 0.00 0.00 4.00
2266 2303 7.614124 TTTGTCGACTAAAACTGTAAAAGGT 57.386 32.000 17.92 0.00 0.00 3.50
2267 2304 7.163032 CGTTTTGTCGACTAAAACTGTAAAAGG 59.837 37.037 30.74 21.26 42.76 3.11
2268 2305 7.163032 CCGTTTTGTCGACTAAAACTGTAAAAG 59.837 37.037 30.74 21.62 42.76 2.27
2269 2306 6.960431 CCGTTTTGTCGACTAAAACTGTAAAA 59.040 34.615 30.74 19.52 42.76 1.52
2270 2307 6.312426 TCCGTTTTGTCGACTAAAACTGTAAA 59.688 34.615 30.74 16.18 42.76 2.01
2271 2308 5.809562 TCCGTTTTGTCGACTAAAACTGTAA 59.190 36.000 30.74 20.19 42.76 2.41
2272 2309 5.231991 GTCCGTTTTGTCGACTAAAACTGTA 59.768 40.000 30.74 21.61 42.76 2.74
2273 2310 4.033243 GTCCGTTTTGTCGACTAAAACTGT 59.967 41.667 30.74 0.00 42.76 3.55
2274 2311 4.511734 GTCCGTTTTGTCGACTAAAACTG 58.488 43.478 30.74 27.60 42.76 3.16
2275 2312 3.557185 GGTCCGTTTTGTCGACTAAAACT 59.443 43.478 30.74 0.00 42.76 2.66
2276 2313 3.309410 TGGTCCGTTTTGTCGACTAAAAC 59.691 43.478 27.83 27.83 41.97 2.43
2277 2314 3.529533 TGGTCCGTTTTGTCGACTAAAA 58.470 40.909 23.35 19.61 0.00 1.52
2278 2315 3.176552 TGGTCCGTTTTGTCGACTAAA 57.823 42.857 19.02 19.02 0.00 1.85
2279 2316 2.886862 TGGTCCGTTTTGTCGACTAA 57.113 45.000 17.92 13.05 0.00 2.24
2280 2317 2.886862 TTGGTCCGTTTTGTCGACTA 57.113 45.000 17.92 6.32 0.00 2.59
2281 2318 2.027003 TTTGGTCCGTTTTGTCGACT 57.973 45.000 17.92 0.00 0.00 4.18
2282 2319 2.159544 TGTTTTGGTCCGTTTTGTCGAC 60.160 45.455 9.11 9.11 0.00 4.20
2283 2320 2.082231 TGTTTTGGTCCGTTTTGTCGA 58.918 42.857 0.00 0.00 0.00 4.20
2284 2321 2.096174 TCTGTTTTGGTCCGTTTTGTCG 59.904 45.455 0.00 0.00 0.00 4.35
2285 2322 3.431856 GTCTGTTTTGGTCCGTTTTGTC 58.568 45.455 0.00 0.00 0.00 3.18
2286 2323 2.164827 GGTCTGTTTTGGTCCGTTTTGT 59.835 45.455 0.00 0.00 0.00 2.83
2287 2324 2.480587 GGGTCTGTTTTGGTCCGTTTTG 60.481 50.000 0.00 0.00 0.00 2.44
2288 2325 1.752498 GGGTCTGTTTTGGTCCGTTTT 59.248 47.619 0.00 0.00 0.00 2.43
2289 2326 1.064240 AGGGTCTGTTTTGGTCCGTTT 60.064 47.619 0.00 0.00 0.00 3.60
2290 2327 0.549469 AGGGTCTGTTTTGGTCCGTT 59.451 50.000 0.00 0.00 0.00 4.44
2291 2328 0.549469 AAGGGTCTGTTTTGGTCCGT 59.451 50.000 0.00 0.00 0.00 4.69
2292 2329 1.687563 AAAGGGTCTGTTTTGGTCCG 58.312 50.000 0.00 0.00 0.00 4.79
2293 2330 5.601583 TTTTAAAGGGTCTGTTTTGGTCC 57.398 39.130 0.00 0.00 0.00 4.46
2294 2331 7.045416 ACAATTTTAAAGGGTCTGTTTTGGTC 58.955 34.615 0.00 0.00 0.00 4.02
2295 2332 6.953101 ACAATTTTAAAGGGTCTGTTTTGGT 58.047 32.000 0.00 0.00 0.00 3.67
2296 2333 6.481976 GGACAATTTTAAAGGGTCTGTTTTGG 59.518 38.462 12.64 0.00 0.00 3.28
2297 2334 6.200097 CGGACAATTTTAAAGGGTCTGTTTTG 59.800 38.462 12.84 0.00 31.78 2.44
2298 2335 6.097129 TCGGACAATTTTAAAGGGTCTGTTTT 59.903 34.615 17.24 0.00 36.49 2.43
2299 2336 5.595133 TCGGACAATTTTAAAGGGTCTGTTT 59.405 36.000 17.24 0.00 36.49 2.83
2300 2337 5.009310 GTCGGACAATTTTAAAGGGTCTGTT 59.991 40.000 17.24 0.00 36.49 3.16
2301 2338 4.517832 GTCGGACAATTTTAAAGGGTCTGT 59.482 41.667 17.24 6.91 36.49 3.41
2302 2339 4.517453 TGTCGGACAATTTTAAAGGGTCTG 59.483 41.667 8.68 14.06 36.45 3.51
2303 2340 4.517832 GTGTCGGACAATTTTAAAGGGTCT 59.482 41.667 13.23 0.00 0.00 3.85
2304 2341 4.517832 AGTGTCGGACAATTTTAAAGGGTC 59.482 41.667 13.23 7.19 0.00 4.46
2305 2342 4.466827 AGTGTCGGACAATTTTAAAGGGT 58.533 39.130 13.23 0.00 0.00 4.34
2306 2343 5.447624 AAGTGTCGGACAATTTTAAAGGG 57.552 39.130 17.19 0.00 31.83 3.95
2307 2344 8.859517 TTTAAAGTGTCGGACAATTTTAAAGG 57.140 30.769 32.70 0.00 42.80 3.11
2317 2354 8.732531 CCCTATAAAAATTTAAAGTGTCGGACA 58.267 33.333 6.76 6.76 0.00 4.02
2318 2355 7.699391 GCCCTATAAAAATTTAAAGTGTCGGAC 59.301 37.037 0.00 0.00 0.00 4.79
2319 2356 7.148035 GGCCCTATAAAAATTTAAAGTGTCGGA 60.148 37.037 0.00 0.00 0.00 4.55
2320 2357 6.976349 GGCCCTATAAAAATTTAAAGTGTCGG 59.024 38.462 0.00 0.00 0.00 4.79
2321 2358 6.976349 GGGCCCTATAAAAATTTAAAGTGTCG 59.024 38.462 17.04 0.00 0.00 4.35
2322 2359 7.979537 CAGGGCCCTATAAAAATTTAAAGTGTC 59.020 37.037 28.13 0.00 0.00 3.67
2323 2360 7.456585 ACAGGGCCCTATAAAAATTTAAAGTGT 59.543 33.333 28.13 10.00 0.00 3.55
2324 2361 7.763985 CACAGGGCCCTATAAAAATTTAAAGTG 59.236 37.037 28.13 18.81 0.00 3.16
2325 2362 7.456585 ACACAGGGCCCTATAAAAATTTAAAGT 59.543 33.333 28.13 10.20 0.00 2.66
2326 2363 7.847096 ACACAGGGCCCTATAAAAATTTAAAG 58.153 34.615 28.13 9.44 0.00 1.85
2327 2364 7.800300 ACACAGGGCCCTATAAAAATTTAAA 57.200 32.000 28.13 0.00 0.00 1.52
2328 2365 7.894364 TGTACACAGGGCCCTATAAAAATTTAA 59.106 33.333 28.13 0.00 0.00 1.52
2329 2366 7.339976 GTGTACACAGGGCCCTATAAAAATTTA 59.660 37.037 28.13 2.74 0.00 1.40
2330 2367 6.153851 GTGTACACAGGGCCCTATAAAAATTT 59.846 38.462 28.13 3.77 0.00 1.82
2331 2368 5.655090 GTGTACACAGGGCCCTATAAAAATT 59.345 40.000 28.13 5.50 0.00 1.82
2332 2369 5.198207 GTGTACACAGGGCCCTATAAAAAT 58.802 41.667 28.13 8.55 0.00 1.82
2333 2370 4.043059 TGTGTACACAGGGCCCTATAAAAA 59.957 41.667 28.13 6.62 36.21 1.94
2334 2371 3.587951 TGTGTACACAGGGCCCTATAAAA 59.412 43.478 28.13 6.44 36.21 1.52
2335 2372 3.182976 TGTGTACACAGGGCCCTATAAA 58.817 45.455 28.13 9.97 36.21 1.40
2336 2373 2.835389 TGTGTACACAGGGCCCTATAA 58.165 47.619 28.13 7.70 36.21 0.98
2337 2374 2.553911 TGTGTACACAGGGCCCTATA 57.446 50.000 28.13 14.93 36.21 1.31
2338 2375 1.663911 TTGTGTACACAGGGCCCTAT 58.336 50.000 28.13 12.06 42.94 2.57
2339 2376 1.072648 GTTTGTGTACACAGGGCCCTA 59.927 52.381 28.13 5.73 42.94 3.53
2340 2377 0.179001 GTTTGTGTACACAGGGCCCT 60.179 55.000 26.52 22.28 42.94 5.19
2341 2378 1.176619 GGTTTGTGTACACAGGGCCC 61.177 60.000 26.52 16.46 42.94 5.80
2342 2379 1.176619 GGGTTTGTGTACACAGGGCC 61.177 60.000 26.52 25.59 42.94 5.80
2343 2380 1.512156 CGGGTTTGTGTACACAGGGC 61.512 60.000 26.52 19.53 42.94 5.19
2344 2381 0.107081 TCGGGTTTGTGTACACAGGG 59.893 55.000 26.52 15.57 42.94 4.45
2345 2382 1.069513 TCTCGGGTTTGTGTACACAGG 59.930 52.381 26.52 15.27 42.94 4.00
2346 2383 2.132762 GTCTCGGGTTTGTGTACACAG 58.867 52.381 26.52 15.92 42.94 3.66
2347 2384 1.202557 GGTCTCGGGTTTGTGTACACA 60.203 52.381 24.62 24.62 39.98 3.72
2348 2385 1.505425 GGTCTCGGGTTTGTGTACAC 58.495 55.000 19.36 19.36 0.00 2.90
2349 2386 0.393820 GGGTCTCGGGTTTGTGTACA 59.606 55.000 0.00 0.00 0.00 2.90
2350 2387 0.683412 AGGGTCTCGGGTTTGTGTAC 59.317 55.000 0.00 0.00 0.00 2.90
2351 2388 0.971386 GAGGGTCTCGGGTTTGTGTA 59.029 55.000 0.00 0.00 0.00 2.90
2352 2389 1.052124 TGAGGGTCTCGGGTTTGTGT 61.052 55.000 0.00 0.00 32.35 3.72
2353 2390 0.324943 ATGAGGGTCTCGGGTTTGTG 59.675 55.000 0.00 0.00 32.35 3.33
2354 2391 1.946984 TATGAGGGTCTCGGGTTTGT 58.053 50.000 0.00 0.00 32.35 2.83
2355 2392 2.700897 AGATATGAGGGTCTCGGGTTTG 59.299 50.000 0.00 0.00 32.35 2.93
2356 2393 3.047695 AGATATGAGGGTCTCGGGTTT 57.952 47.619 0.00 0.00 32.35 3.27
2357 2394 2.777459 AGATATGAGGGTCTCGGGTT 57.223 50.000 0.00 0.00 32.35 4.11
2358 2395 2.091278 TGAAGATATGAGGGTCTCGGGT 60.091 50.000 0.00 0.00 32.35 5.28
2359 2396 2.560542 CTGAAGATATGAGGGTCTCGGG 59.439 54.545 0.00 0.00 32.35 5.14
2360 2397 3.226777 ACTGAAGATATGAGGGTCTCGG 58.773 50.000 0.00 0.00 32.35 4.63
2361 2398 4.927978 AACTGAAGATATGAGGGTCTCG 57.072 45.455 0.00 0.00 32.35 4.04
2362 2399 6.644347 TCAAAACTGAAGATATGAGGGTCTC 58.356 40.000 0.00 0.00 0.00 3.36
2363 2400 6.627087 TCAAAACTGAAGATATGAGGGTCT 57.373 37.500 0.00 0.00 0.00 3.85
2364 2401 6.317391 CCTTCAAAACTGAAGATATGAGGGTC 59.683 42.308 14.88 0.00 45.93 4.46
2365 2402 6.183347 CCTTCAAAACTGAAGATATGAGGGT 58.817 40.000 14.88 0.00 45.93 4.34
2366 2403 5.067023 GCCTTCAAAACTGAAGATATGAGGG 59.933 44.000 14.88 0.00 45.93 4.30
2367 2404 5.649395 TGCCTTCAAAACTGAAGATATGAGG 59.351 40.000 14.88 0.43 45.93 3.86
2368 2405 6.748333 TGCCTTCAAAACTGAAGATATGAG 57.252 37.500 14.88 0.67 45.93 2.90
2369 2406 7.707624 ATTGCCTTCAAAACTGAAGATATGA 57.292 32.000 14.88 0.00 45.93 2.15
2370 2407 8.767478 AAATTGCCTTCAAAACTGAAGATATG 57.233 30.769 14.88 1.59 45.93 1.78
2371 2408 9.211485 CAAAATTGCCTTCAAAACTGAAGATAT 57.789 29.630 14.88 4.27 45.93 1.63
2372 2409 8.592105 CAAAATTGCCTTCAAAACTGAAGATA 57.408 30.769 14.88 2.65 45.93 1.98
2373 2410 7.486802 CAAAATTGCCTTCAAAACTGAAGAT 57.513 32.000 14.88 0.31 45.93 2.40
2374 2411 6.907206 CAAAATTGCCTTCAAAACTGAAGA 57.093 33.333 14.88 0.00 45.93 2.87
2390 2427 0.680618 TCAGGGCACTGGCAAAATTG 59.319 50.000 17.80 0.00 44.99 2.32
2391 2428 1.422531 TTCAGGGCACTGGCAAAATT 58.577 45.000 17.80 0.00 44.99 1.82
2392 2429 1.648116 ATTCAGGGCACTGGCAAAAT 58.352 45.000 17.80 5.38 44.99 1.82
2393 2430 2.170166 CTATTCAGGGCACTGGCAAAA 58.830 47.619 17.80 2.71 44.99 2.44
2394 2431 1.838112 CTATTCAGGGCACTGGCAAA 58.162 50.000 17.80 3.14 44.99 3.68
2395 2432 0.680921 GCTATTCAGGGCACTGGCAA 60.681 55.000 17.80 4.00 44.99 4.52
2396 2433 1.077501 GCTATTCAGGGCACTGGCA 60.078 57.895 17.80 3.29 44.99 4.92
2397 2434 2.182842 CGCTATTCAGGGCACTGGC 61.183 63.158 17.80 10.66 44.99 4.85
2398 2435 1.524621 CCGCTATTCAGGGCACTGG 60.525 63.158 17.80 0.00 44.99 4.00
2399 2436 0.811616 GACCGCTATTCAGGGCACTG 60.812 60.000 10.61 10.61 46.30 3.66
2400 2437 1.264749 TGACCGCTATTCAGGGCACT 61.265 55.000 0.00 0.00 41.39 4.40
2401 2438 0.392461 TTGACCGCTATTCAGGGCAC 60.392 55.000 0.00 0.00 46.88 5.01
2402 2439 0.546122 ATTGACCGCTATTCAGGGCA 59.454 50.000 0.00 0.00 45.29 5.36
2403 2440 0.947244 CATTGACCGCTATTCAGGGC 59.053 55.000 0.00 0.00 35.66 5.19
2404 2441 2.332063 ACATTGACCGCTATTCAGGG 57.668 50.000 0.00 0.00 34.56 4.45
2405 2442 2.355756 CCAACATTGACCGCTATTCAGG 59.644 50.000 0.00 0.00 0.00 3.86
2406 2443 2.223340 GCCAACATTGACCGCTATTCAG 60.223 50.000 0.00 0.00 0.00 3.02
2407 2444 1.742831 GCCAACATTGACCGCTATTCA 59.257 47.619 0.00 0.00 0.00 2.57
2408 2445 1.742831 TGCCAACATTGACCGCTATTC 59.257 47.619 0.00 0.00 0.00 1.75
2409 2446 1.745087 CTGCCAACATTGACCGCTATT 59.255 47.619 0.00 0.00 0.00 1.73
2410 2447 1.340017 ACTGCCAACATTGACCGCTAT 60.340 47.619 0.00 0.00 0.00 2.97
2411 2448 0.036164 ACTGCCAACATTGACCGCTA 59.964 50.000 0.00 0.00 0.00 4.26
2412 2449 0.823356 AACTGCCAACATTGACCGCT 60.823 50.000 0.00 0.00 0.00 5.52
2413 2450 0.664166 CAACTGCCAACATTGACCGC 60.664 55.000 0.00 0.00 0.00 5.68
2414 2451 0.950836 TCAACTGCCAACATTGACCG 59.049 50.000 0.00 0.00 0.00 4.79
2415 2452 1.270550 CCTCAACTGCCAACATTGACC 59.729 52.381 0.00 0.00 0.00 4.02
2416 2453 2.229792 TCCTCAACTGCCAACATTGAC 58.770 47.619 0.00 0.00 0.00 3.18
2417 2454 2.655090 TCCTCAACTGCCAACATTGA 57.345 45.000 0.00 0.00 0.00 2.57
2418 2455 3.508793 AGATTCCTCAACTGCCAACATTG 59.491 43.478 0.00 0.00 0.00 2.82
2419 2456 3.760684 GAGATTCCTCAACTGCCAACATT 59.239 43.478 0.00 0.00 39.24 2.71
2420 2457 3.245016 TGAGATTCCTCAACTGCCAACAT 60.245 43.478 0.00 0.00 45.74 2.71
2421 2458 2.106338 TGAGATTCCTCAACTGCCAACA 59.894 45.455 0.00 0.00 45.74 3.33
2422 2459 2.783135 TGAGATTCCTCAACTGCCAAC 58.217 47.619 0.00 0.00 45.74 3.77
2444 2481 1.600413 GCTTCAAGGTGTTTGCGGAAG 60.600 52.381 0.00 0.00 36.70 3.46
2445 2482 0.383949 GCTTCAAGGTGTTTGCGGAA 59.616 50.000 0.00 0.00 36.70 4.30
2446 2483 0.465460 AGCTTCAAGGTGTTTGCGGA 60.465 50.000 0.00 0.00 36.70 5.54
2447 2484 0.040067 GAGCTTCAAGGTGTTTGCGG 60.040 55.000 0.00 0.00 36.70 5.69
2448 2485 0.384725 CGAGCTTCAAGGTGTTTGCG 60.385 55.000 0.00 0.00 36.70 4.85
2449 2486 0.661483 GCGAGCTTCAAGGTGTTTGC 60.661 55.000 0.00 0.00 36.70 3.68
2450 2487 0.040067 GGCGAGCTTCAAGGTGTTTG 60.040 55.000 0.00 0.00 38.17 2.93
2451 2488 1.507141 CGGCGAGCTTCAAGGTGTTT 61.507 55.000 0.00 0.00 0.00 2.83
2452 2489 1.961277 CGGCGAGCTTCAAGGTGTT 60.961 57.895 0.00 0.00 0.00 3.32
2453 2490 2.357517 CGGCGAGCTTCAAGGTGT 60.358 61.111 0.00 0.00 0.00 4.16
2454 2491 3.793144 GCGGCGAGCTTCAAGGTG 61.793 66.667 12.98 0.00 44.04 4.00
2464 2501 2.879462 GTCGTTGTAGGCGGCGAG 60.879 66.667 12.98 0.00 33.90 5.03
2465 2502 4.424566 GGTCGTTGTAGGCGGCGA 62.425 66.667 12.98 0.00 34.45 5.54
2468 2505 4.728102 TGCGGTCGTTGTAGGCGG 62.728 66.667 0.00 0.00 0.00 6.13
2469 2506 3.475774 GTGCGGTCGTTGTAGGCG 61.476 66.667 0.00 0.00 0.00 5.52
2470 2507 3.116531 GGTGCGGTCGTTGTAGGC 61.117 66.667 0.00 0.00 0.00 3.93
2471 2508 2.807895 CGGTGCGGTCGTTGTAGG 60.808 66.667 0.00 0.00 0.00 3.18
2472 2509 3.475774 GCGGTGCGGTCGTTGTAG 61.476 66.667 0.00 0.00 0.00 2.74
2519 2556 2.095516 TCGCATCGATTCAGCTAGCTAG 60.096 50.000 18.86 16.84 0.00 3.42
2520 2557 1.880027 TCGCATCGATTCAGCTAGCTA 59.120 47.619 18.86 2.62 0.00 3.32
2521 2558 0.670706 TCGCATCGATTCAGCTAGCT 59.329 50.000 12.68 12.68 0.00 3.32
2522 2559 1.059173 CTCGCATCGATTCAGCTAGC 58.941 55.000 6.62 6.62 34.61 3.42
2523 2560 2.414058 ACTCGCATCGATTCAGCTAG 57.586 50.000 0.00 0.41 34.61 3.42
2524 2561 3.853676 GCTTACTCGCATCGATTCAGCTA 60.854 47.826 0.00 0.00 34.61 3.32
2525 2562 2.736978 CTTACTCGCATCGATTCAGCT 58.263 47.619 0.00 0.00 34.61 4.24
2526 2563 1.191204 GCTTACTCGCATCGATTCAGC 59.809 52.381 0.00 0.00 34.61 4.26
2527 2564 2.736978 AGCTTACTCGCATCGATTCAG 58.263 47.619 0.00 0.00 34.61 3.02
2528 2565 2.871182 AGCTTACTCGCATCGATTCA 57.129 45.000 0.00 0.00 34.61 2.57
2529 2566 2.659279 GCTAGCTTACTCGCATCGATTC 59.341 50.000 7.70 0.00 34.80 2.52
2530 2567 2.294791 AGCTAGCTTACTCGCATCGATT 59.705 45.455 12.68 0.00 37.07 3.34
2531 2568 1.883275 AGCTAGCTTACTCGCATCGAT 59.117 47.619 12.68 0.00 37.07 3.59
2532 2569 1.309950 AGCTAGCTTACTCGCATCGA 58.690 50.000 12.68 0.00 37.07 3.59
2533 2570 2.845486 CTAGCTAGCTTACTCGCATCG 58.155 52.381 24.88 0.00 37.07 3.84
2534 2571 2.591133 GCTAGCTAGCTTACTCGCATC 58.409 52.381 33.71 4.79 45.62 3.91
2535 2572 2.715737 GCTAGCTAGCTTACTCGCAT 57.284 50.000 33.71 0.00 45.62 4.73
2545 2582 3.421741 CGATTCATCGTAGCTAGCTAGC 58.578 50.000 33.96 33.96 45.71 3.42
2550 2587 4.729170 ATCGCATCGATTCATCGTAGCTAG 60.729 45.833 18.91 9.98 44.59 3.42
2551 2588 3.127030 ATCGCATCGATTCATCGTAGCTA 59.873 43.478 18.91 12.68 44.59 3.32
2552 2589 2.095008 ATCGCATCGATTCATCGTAGCT 60.095 45.455 18.91 0.00 44.59 3.32
2553 2590 2.027332 CATCGCATCGATTCATCGTAGC 59.973 50.000 8.97 12.19 44.59 3.58
2554 2591 2.027332 GCATCGCATCGATTCATCGTAG 59.973 50.000 8.97 4.58 44.59 3.51
2555 2592 1.985684 GCATCGCATCGATTCATCGTA 59.014 47.619 8.97 0.00 44.59 3.43
2556 2593 0.786581 GCATCGCATCGATTCATCGT 59.213 50.000 8.97 0.00 44.59 3.73
2557 2594 1.066136 AGCATCGCATCGATTCATCG 58.934 50.000 0.00 2.62 44.59 3.84
2558 2595 2.029003 GCTAGCATCGCATCGATTCATC 59.971 50.000 10.63 0.00 44.59 2.92
2559 2596 1.998315 GCTAGCATCGCATCGATTCAT 59.002 47.619 10.63 0.00 44.59 2.57
2560 2597 1.000171 AGCTAGCATCGCATCGATTCA 60.000 47.619 18.83 0.00 44.59 2.57
2561 2598 1.707632 AGCTAGCATCGCATCGATTC 58.292 50.000 18.83 0.00 44.59 2.52
2562 2599 2.873609 CTAGCTAGCATCGCATCGATT 58.126 47.619 18.83 0.00 44.59 3.34
2587 2624 0.040246 GGTTCGCCGTAGCTAGCTAG 60.040 60.000 24.78 16.84 36.60 3.42
2588 2625 2.028130 GGTTCGCCGTAGCTAGCTA 58.972 57.895 20.67 20.67 36.60 3.32
2589 2626 2.806237 GGTTCGCCGTAGCTAGCT 59.194 61.111 23.12 23.12 36.60 3.32
2599 2636 3.338676 GCATCGATCCGGTTCGCC 61.339 66.667 26.43 14.82 38.97 5.54
2600 2637 3.692367 CGCATCGATCCGGTTCGC 61.692 66.667 26.43 13.91 38.97 4.70
2601 2638 2.011349 CTCGCATCGATCCGGTTCG 61.011 63.158 25.55 25.55 40.46 3.95
2602 2639 2.303676 GCTCGCATCGATCCGGTTC 61.304 63.158 9.20 0.74 34.61 3.62
2603 2640 2.279517 GCTCGCATCGATCCGGTT 60.280 61.111 9.20 0.00 34.61 4.44
2604 2641 2.960957 CTTGCTCGCATCGATCCGGT 62.961 60.000 9.20 0.00 34.61 5.28
2605 2642 2.279451 TTGCTCGCATCGATCCGG 60.279 61.111 9.20 0.00 34.61 5.14
2606 2643 2.936570 GCTTGCTCGCATCGATCCG 61.937 63.158 1.26 1.26 34.61 4.18
2607 2644 0.319040 TAGCTTGCTCGCATCGATCC 60.319 55.000 0.00 0.00 34.61 3.36
2608 2645 1.059173 CTAGCTTGCTCGCATCGATC 58.941 55.000 0.00 0.00 34.61 3.69
2609 2646 0.943359 GCTAGCTTGCTCGCATCGAT 60.943 55.000 13.17 0.00 34.61 3.59
2610 2647 1.589993 GCTAGCTTGCTCGCATCGA 60.590 57.895 13.17 0.00 0.00 3.59
2611 2648 0.318191 TAGCTAGCTTGCTCGCATCG 60.318 55.000 25.94 0.00 42.97 3.84
2612 2649 1.417372 CTAGCTAGCTTGCTCGCATC 58.583 55.000 25.94 0.00 42.97 3.91
2613 2650 0.599728 GCTAGCTAGCTTGCTCGCAT 60.600 55.000 34.41 11.88 46.62 4.73
2614 2651 1.227089 GCTAGCTAGCTTGCTCGCA 60.227 57.895 34.41 14.54 46.62 5.10
2615 2652 3.623993 GCTAGCTAGCTTGCTCGC 58.376 61.111 34.41 25.75 45.62 5.03
2649 2686 4.760047 AGGATGGCCACGACACGC 62.760 66.667 8.16 0.00 36.29 5.34
2650 2687 2.815211 CAGGATGGCCACGACACG 60.815 66.667 8.16 0.00 36.29 4.49
2651 2688 3.127533 GCAGGATGGCCACGACAC 61.128 66.667 8.16 0.00 35.86 3.67
2652 2689 4.758251 CGCAGGATGGCCACGACA 62.758 66.667 8.16 0.00 37.99 4.35
2653 2690 4.760047 ACGCAGGATGGCCACGAC 62.760 66.667 18.43 7.34 38.78 4.34
2654 2691 4.451150 GACGCAGGATGGCCACGA 62.451 66.667 18.43 0.00 38.78 4.35
2655 2692 3.958147 AAGACGCAGGATGGCCACG 62.958 63.158 8.16 9.85 40.56 4.94
2656 2693 2.045926 AAGACGCAGGATGGCCAC 60.046 61.111 8.16 1.35 35.86 5.01
2657 2694 2.268920 GAAGACGCAGGATGGCCA 59.731 61.111 8.56 8.56 35.86 5.36
2658 2695 2.892425 CGAAGACGCAGGATGGCC 60.892 66.667 0.00 0.00 35.86 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.