Multiple sequence alignment - TraesCS3B01G393600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G393600 chr3B 100.000 2216 0 0 1 2216 619060160 619062375 0.000000e+00 4093
1 TraesCS3B01G393600 chr3D 90.923 1994 73 36 247 2163 465528490 465530452 0.000000e+00 2580
2 TraesCS3B01G393600 chr3D 93.281 253 12 3 2 254 465527834 465528081 3.480000e-98 368
3 TraesCS3B01G393600 chr3A 85.791 2245 136 76 1 2163 608816326 608818469 0.000000e+00 2209
4 TraesCS3B01G393600 chr4D 92.308 78 6 0 1124 1201 360467937 360468014 6.470000e-21 111
5 TraesCS3B01G393600 chr4A 92.000 75 6 0 1127 1201 104391399 104391325 3.010000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G393600 chr3B 619060160 619062375 2215 False 4093 4093 100.000 1 2216 1 chr3B.!!$F1 2215
1 TraesCS3B01G393600 chr3D 465527834 465530452 2618 False 1474 2580 92.102 2 2163 2 chr3D.!!$F1 2161
2 TraesCS3B01G393600 chr3A 608816326 608818469 2143 False 2209 2209 85.791 1 2163 1 chr3A.!!$F1 2162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 1238 0.108138 GGTCCTTCTGGGTCGTCATG 60.108 60.0 0.0 0.0 36.25 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 2747 0.108089 ATGCTGCTCTGCTGAGTCTG 60.108 55.0 20.24 16.14 42.13 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 3.228243 ATCTGCAAAGCCCTGCCCA 62.228 57.895 5.25 0.00 41.90 5.36
158 159 5.420739 GGAGACTCTCTCTAGGTTTGAATGT 59.579 44.000 6.02 0.00 42.95 2.71
166 167 5.869344 TCTCTAGGTTTGAATGTTCATCACG 59.131 40.000 0.00 0.00 37.00 4.35
172 173 1.271325 TGAATGTTCATCACGGCCACT 60.271 47.619 2.24 0.00 31.01 4.00
173 174 1.131126 GAATGTTCATCACGGCCACTG 59.869 52.381 2.24 0.00 0.00 3.66
177 178 0.884259 TTCATCACGGCCACTGTGTG 60.884 55.000 2.24 1.84 38.48 3.82
224 225 1.130955 CGTGTGCTTTTGTCATTGCC 58.869 50.000 0.00 0.00 0.00 4.52
291 718 1.353358 TGGAGACTCACTCGAGGGTTA 59.647 52.381 15.72 0.00 45.76 2.85
373 800 6.015603 TGTGCAATGGTCAAATTTACTGATGA 60.016 34.615 0.00 0.00 0.00 2.92
398 825 0.946528 TGCTGCTGTTGCTACTGTTG 59.053 50.000 0.00 2.29 40.48 3.33
497 944 5.148651 AGTATTAACTCGCACTGACCTTT 57.851 39.130 0.00 0.00 0.00 3.11
499 946 2.902705 TAACTCGCACTGACCTTTGT 57.097 45.000 0.00 0.00 0.00 2.83
520 967 3.994392 GTCATTTCTCAACCACTTCGCTA 59.006 43.478 0.00 0.00 0.00 4.26
523 970 4.537135 TTTCTCAACCACTTCGCTATCT 57.463 40.909 0.00 0.00 0.00 1.98
660 1122 3.682858 CGCCCGAGAACAAGATAAAAAGA 59.317 43.478 0.00 0.00 0.00 2.52
661 1123 4.201724 CGCCCGAGAACAAGATAAAAAGAG 60.202 45.833 0.00 0.00 0.00 2.85
665 1127 6.595716 CCCGAGAACAAGATAAAAAGAGACAT 59.404 38.462 0.00 0.00 0.00 3.06
666 1128 7.201565 CCCGAGAACAAGATAAAAAGAGACATC 60.202 40.741 0.00 0.00 0.00 3.06
733 1198 1.269448 ACAGCAAAAACCCTGCATACG 59.731 47.619 0.00 0.00 42.48 3.06
734 1199 1.269448 CAGCAAAAACCCTGCATACGT 59.731 47.619 0.00 0.00 42.48 3.57
765 1231 2.715763 TCAAGTAGGTCCTTCTGGGT 57.284 50.000 0.00 0.00 36.25 4.51
766 1232 2.537143 TCAAGTAGGTCCTTCTGGGTC 58.463 52.381 0.00 0.00 36.25 4.46
767 1233 1.204941 CAAGTAGGTCCTTCTGGGTCG 59.795 57.143 0.00 0.00 36.25 4.79
768 1234 0.408700 AGTAGGTCCTTCTGGGTCGT 59.591 55.000 0.00 0.00 36.25 4.34
769 1235 0.816373 GTAGGTCCTTCTGGGTCGTC 59.184 60.000 0.00 0.00 36.25 4.20
770 1236 0.406750 TAGGTCCTTCTGGGTCGTCA 59.593 55.000 0.00 0.00 36.25 4.35
771 1237 0.252284 AGGTCCTTCTGGGTCGTCAT 60.252 55.000 0.00 0.00 36.25 3.06
772 1238 0.108138 GGTCCTTCTGGGTCGTCATG 60.108 60.000 0.00 0.00 36.25 3.07
884 1361 1.202279 CCTCATCAGCTCACTGTCTCG 60.202 57.143 0.00 0.00 44.77 4.04
909 1386 2.293399 GCCTCGATCCTCTTCTCTTCTC 59.707 54.545 0.00 0.00 0.00 2.87
911 1388 3.435026 CCTCGATCCTCTTCTCTTCTCCT 60.435 52.174 0.00 0.00 0.00 3.69
912 1389 3.815401 CTCGATCCTCTTCTCTTCTCCTC 59.185 52.174 0.00 0.00 0.00 3.71
913 1390 3.458118 TCGATCCTCTTCTCTTCTCCTCT 59.542 47.826 0.00 0.00 0.00 3.69
914 1391 4.080015 TCGATCCTCTTCTCTTCTCCTCTT 60.080 45.833 0.00 0.00 0.00 2.85
918 1395 4.225492 TCCTCTTCTCTTCTCCTCTTCGTA 59.775 45.833 0.00 0.00 0.00 3.43
984 1461 0.320771 GCTTGAGGAAGGACTCGCAA 60.321 55.000 0.00 0.00 40.39 4.85
1209 1698 2.105128 GTCTGCTGGCGCGACTAT 59.895 61.111 15.80 0.00 39.65 2.12
1250 1747 2.504244 CCGCGTGAGAAGGTCGAC 60.504 66.667 7.13 7.13 0.00 4.20
1328 1831 4.044317 TCCTCCTCCTGTGTAAAGAGTAGT 59.956 45.833 0.00 0.00 0.00 2.73
1329 1832 5.252397 TCCTCCTCCTGTGTAAAGAGTAGTA 59.748 44.000 0.00 0.00 0.00 1.82
1330 1833 5.591067 CCTCCTCCTGTGTAAAGAGTAGTAG 59.409 48.000 0.00 0.00 0.00 2.57
1558 2071 2.350522 CCCTTGTTTGACTCCTCGATG 58.649 52.381 0.00 0.00 0.00 3.84
1658 2171 3.242511 CCGTCGACCGTTTTCTTTCTTTT 60.243 43.478 10.58 0.00 33.66 2.27
1659 2172 4.336932 CGTCGACCGTTTTCTTTCTTTTT 58.663 39.130 10.58 0.00 0.00 1.94
1674 2187 8.940397 TCTTTCTTTTTACTCCTGGAAATCAT 57.060 30.769 0.00 0.00 0.00 2.45
1722 2235 6.938507 TCTCAGCTCCATTTGCAAAAATAAT 58.061 32.000 17.19 0.00 0.00 1.28
1725 2238 8.477984 TCAGCTCCATTTGCAAAAATAATTAC 57.522 30.769 17.19 1.66 0.00 1.89
1729 2242 9.586435 GCTCCATTTGCAAAAATAATTACTACT 57.414 29.630 17.19 0.00 0.00 2.57
1771 2284 5.075493 ACATTTCAGCCAGAGAGTTTTCAT 58.925 37.500 0.00 0.00 0.00 2.57
1807 2323 4.264614 CGTGACGTCGCAGATTTTTAGTAT 59.735 41.667 27.16 0.00 40.67 2.12
1829 2348 5.873179 TTCCTTGGCAGATTTTTACTACG 57.127 39.130 0.00 0.00 0.00 3.51
1830 2349 4.901868 TCCTTGGCAGATTTTTACTACGT 58.098 39.130 0.00 0.00 0.00 3.57
1831 2350 6.040209 TCCTTGGCAGATTTTTACTACGTA 57.960 37.500 0.00 0.00 0.00 3.57
1832 2351 5.870978 TCCTTGGCAGATTTTTACTACGTAC 59.129 40.000 0.00 0.00 0.00 3.67
1862 2395 3.472263 GCAGGTTTTTACCACTGCG 57.528 52.632 0.00 0.00 45.56 5.18
1892 2425 2.965572 AAAACTTGCAGCAGCTGAAA 57.034 40.000 27.39 21.36 42.74 2.69
1947 2480 3.612479 CGTTGCAATCTTTTTGAGGGAGG 60.612 47.826 0.59 0.00 0.00 4.30
2029 2568 5.708230 ACGCACTGAATAATTTACTCCCAAA 59.292 36.000 0.00 0.00 0.00 3.28
2043 2582 0.033781 CCCAAAACGACACCTCCGTA 59.966 55.000 0.00 0.00 39.57 4.02
2045 2584 1.997606 CCAAAACGACACCTCCGTATC 59.002 52.381 0.00 0.00 39.57 2.24
2046 2585 2.353406 CCAAAACGACACCTCCGTATCT 60.353 50.000 0.00 0.00 39.57 1.98
2047 2586 2.649331 AAACGACACCTCCGTATCTG 57.351 50.000 0.00 0.00 39.57 2.90
2048 2587 1.830279 AACGACACCTCCGTATCTGA 58.170 50.000 0.00 0.00 39.57 3.27
2049 2588 1.380524 ACGACACCTCCGTATCTGAG 58.619 55.000 0.00 0.00 38.61 3.35
2050 2589 0.029567 CGACACCTCCGTATCTGAGC 59.970 60.000 0.00 0.00 0.00 4.26
2051 2590 0.029567 GACACCTCCGTATCTGAGCG 59.970 60.000 0.00 0.00 0.00 5.03
2052 2591 0.680280 ACACCTCCGTATCTGAGCGT 60.680 55.000 4.25 0.00 0.00 5.07
2053 2592 0.029567 CACCTCCGTATCTGAGCGTC 59.970 60.000 4.25 0.00 0.00 5.19
2054 2593 1.280142 CCTCCGTATCTGAGCGTCG 59.720 63.158 0.00 0.00 0.00 5.12
2058 2597 1.062685 CGTATCTGAGCGTCGCTGT 59.937 57.895 27.16 10.17 39.88 4.40
2060 2599 0.867753 GTATCTGAGCGTCGCTGTGG 60.868 60.000 27.16 13.87 39.88 4.17
2094 2643 1.005097 ACGTAAAAATCCCCTCCACCC 59.995 52.381 0.00 0.00 0.00 4.61
2096 2645 0.626916 TAAAAATCCCCTCCACCCCG 59.373 55.000 0.00 0.00 0.00 5.73
2163 2718 4.329545 GAACCCTGCAGCCCGTCA 62.330 66.667 8.66 0.00 0.00 4.35
2164 2719 4.643387 AACCCTGCAGCCCGTCAC 62.643 66.667 8.66 0.00 0.00 3.67
2166 2721 3.390521 CCCTGCAGCCCGTCACTA 61.391 66.667 8.66 0.00 0.00 2.74
2167 2722 2.125512 CCTGCAGCCCGTCACTAC 60.126 66.667 8.66 0.00 0.00 2.73
2176 2731 2.789917 CGTCACTACGCTACGCCT 59.210 61.111 0.00 0.00 43.12 5.52
2177 2732 2.009108 CGTCACTACGCTACGCCTA 58.991 57.895 0.00 0.00 43.12 3.93
2178 2733 0.315706 CGTCACTACGCTACGCCTAC 60.316 60.000 0.00 0.00 43.12 3.18
2179 2734 3.848298 CGTCACTACGCTACGCCTACG 62.848 61.905 0.00 0.00 43.12 3.51
2180 2735 1.653533 CACTACGCTACGCCTACGC 60.654 63.158 0.00 0.00 45.53 4.42
2181 2736 2.108514 ACTACGCTACGCCTACGCA 61.109 57.895 0.00 0.00 45.53 5.24
2182 2737 1.063006 CTACGCTACGCCTACGCAA 59.937 57.895 0.00 0.00 45.53 4.85
2183 2738 0.317603 CTACGCTACGCCTACGCAAT 60.318 55.000 0.00 0.00 45.53 3.56
2184 2739 0.317269 TACGCTACGCCTACGCAATC 60.317 55.000 0.00 0.00 45.53 2.67
2185 2740 1.587876 CGCTACGCCTACGCAATCA 60.588 57.895 0.00 0.00 45.53 2.57
2186 2741 1.540607 CGCTACGCCTACGCAATCAG 61.541 60.000 0.00 0.00 45.53 2.90
2187 2742 0.527817 GCTACGCCTACGCAATCAGT 60.528 55.000 0.00 0.00 45.53 3.41
2188 2743 1.478137 CTACGCCTACGCAATCAGTC 58.522 55.000 0.00 0.00 45.53 3.51
2189 2744 0.248336 TACGCCTACGCAATCAGTCG 60.248 55.000 0.00 0.00 45.53 4.18
2190 2745 1.226575 CGCCTACGCAATCAGTCGA 60.227 57.895 0.00 0.00 34.03 4.20
2191 2746 1.202973 CGCCTACGCAATCAGTCGAG 61.203 60.000 0.00 0.00 34.03 4.04
2192 2747 1.483424 GCCTACGCAATCAGTCGAGC 61.483 60.000 0.00 0.00 34.03 5.03
2193 2748 0.179137 CCTACGCAATCAGTCGAGCA 60.179 55.000 0.00 0.00 0.00 4.26
2194 2749 1.195347 CTACGCAATCAGTCGAGCAG 58.805 55.000 0.00 0.00 0.00 4.24
2195 2750 0.808755 TACGCAATCAGTCGAGCAGA 59.191 50.000 0.00 0.00 0.00 4.26
2203 2758 4.474530 GTCGAGCAGACTCAGCAG 57.525 61.111 5.26 0.00 46.13 4.24
2204 2759 1.879480 GTCGAGCAGACTCAGCAGA 59.121 57.895 5.26 0.00 46.13 4.26
2205 2760 0.179166 GTCGAGCAGACTCAGCAGAG 60.179 60.000 4.31 4.31 46.13 3.35
2206 2761 1.516821 CGAGCAGACTCAGCAGAGC 60.517 63.158 5.96 0.00 46.09 4.09
2207 2762 1.590665 GAGCAGACTCAGCAGAGCA 59.409 57.895 5.96 0.00 46.09 4.26
2208 2763 0.458889 GAGCAGACTCAGCAGAGCAG 60.459 60.000 5.96 0.00 46.09 4.24
2209 2764 2.101835 GCAGACTCAGCAGAGCAGC 61.102 63.158 5.96 4.28 46.09 5.25
2210 2765 1.292541 CAGACTCAGCAGAGCAGCA 59.707 57.895 5.96 0.00 46.09 4.41
2211 2766 0.108089 CAGACTCAGCAGAGCAGCAT 60.108 55.000 5.96 0.00 46.09 3.79
2212 2767 0.176219 AGACTCAGCAGAGCAGCATC 59.824 55.000 5.96 0.00 46.09 3.91
2213 2768 0.810823 GACTCAGCAGAGCAGCATCC 60.811 60.000 5.96 0.00 46.09 3.51
2214 2769 1.266160 ACTCAGCAGAGCAGCATCCT 61.266 55.000 5.96 0.00 46.09 3.24
2215 2770 0.751452 CTCAGCAGAGCAGCATCCTA 59.249 55.000 0.00 0.00 34.61 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.033090 GTCGGGTCAAAACCTCGAGT 59.967 55.000 12.31 0.00 43.91 4.18
21 22 2.247267 CGTGCGTCGGGTCAAAAC 59.753 61.111 0.00 0.00 35.71 2.43
86 87 3.683937 GCAAACCCACAGGCGCAT 61.684 61.111 10.83 0.00 36.11 4.73
158 159 0.884259 CACACAGTGGCCGTGATGAA 60.884 55.000 15.23 0.00 37.80 2.57
172 173 2.280797 GGAAGAGCGGTGCACACA 60.281 61.111 20.43 0.00 0.00 3.72
173 174 2.029844 GAGGAAGAGCGGTGCACAC 61.030 63.158 20.43 10.24 0.00 3.82
177 178 1.446966 GACTGAGGAAGAGCGGTGC 60.447 63.158 0.00 0.00 0.00 5.01
224 225 4.095410 TCGCTAAATTTGACCATTGCAG 57.905 40.909 0.00 0.00 0.00 4.41
291 718 1.464608 CAGTGACCGCGATGAACATTT 59.535 47.619 8.23 0.00 0.00 2.32
373 800 1.815003 GTAGCAACAGCAGCAGGAAAT 59.185 47.619 0.00 0.00 0.00 2.17
398 825 6.152932 ACCATCCAATCAAAGTTATGATGC 57.847 37.500 0.00 0.00 39.90 3.91
497 944 2.548057 GCGAAGTGGTTGAGAAATGACA 59.452 45.455 0.00 0.00 0.00 3.58
499 946 3.126001 AGCGAAGTGGTTGAGAAATGA 57.874 42.857 0.00 0.00 0.00 2.57
520 967 2.027377 CAGTGCTTGGACTTGGAGAGAT 60.027 50.000 0.00 0.00 0.00 2.75
523 970 1.131638 ACAGTGCTTGGACTTGGAGA 58.868 50.000 0.00 0.00 0.00 3.71
582 1038 1.413517 GGGATGGGGCCAGATTTGATT 60.414 52.381 4.39 0.00 0.00 2.57
660 1122 9.739276 CTTCTAATCTCCTACTCATAGATGTCT 57.261 37.037 0.00 0.00 30.50 3.41
661 1123 8.458843 GCTTCTAATCTCCTACTCATAGATGTC 58.541 40.741 0.00 0.00 30.50 3.06
665 1127 5.941058 CCGCTTCTAATCTCCTACTCATAGA 59.059 44.000 0.00 0.00 0.00 1.98
666 1128 5.124776 CCCGCTTCTAATCTCCTACTCATAG 59.875 48.000 0.00 0.00 0.00 2.23
733 1198 6.935208 AGGACCTACTTGATGTTTTTCTACAC 59.065 38.462 0.00 0.00 0.00 2.90
734 1199 7.074653 AGGACCTACTTGATGTTTTTCTACA 57.925 36.000 0.00 0.00 0.00 2.74
784 1252 1.879575 TAATGGAGCAGGGTGTAGCT 58.120 50.000 0.00 0.00 45.25 3.32
884 1361 1.007849 GAAGAGGATCGAGGCGAGC 60.008 63.158 0.00 0.00 42.67 5.03
909 1386 3.073144 GCTCTAGCTTGTACGAAGAGG 57.927 52.381 10.88 1.65 35.34 3.69
968 1445 1.273606 CTTCTTGCGAGTCCTTCCTCA 59.726 52.381 0.00 0.00 0.00 3.86
984 1461 0.534412 CCATCAGCACCGACTCTTCT 59.466 55.000 0.00 0.00 0.00 2.85
991 1474 1.305297 AGACCTCCATCAGCACCGA 60.305 57.895 0.00 0.00 0.00 4.69
1240 1737 1.033574 GATGGATCGGTCGACCTTCT 58.966 55.000 30.92 15.81 0.00 2.85
1346 1849 9.524106 CTAACAAACGGTAAGAAAGGAAAAATT 57.476 29.630 0.00 0.00 0.00 1.82
1353 1856 5.622770 ATGCTAACAAACGGTAAGAAAGG 57.377 39.130 0.00 0.00 0.00 3.11
1558 2071 2.677003 CGATGAACCACACCCGCAC 61.677 63.158 0.00 0.00 0.00 5.34
1658 2171 3.380393 TCCGGATGATTTCCAGGAGTAA 58.620 45.455 0.00 0.00 45.78 2.24
1659 2172 3.040655 TCCGGATGATTTCCAGGAGTA 57.959 47.619 0.00 0.00 45.78 2.59
1722 2235 6.088016 TCGCTGGTTTTGAAGTAGTAGTAA 57.912 37.500 0.00 0.00 0.00 2.24
1725 2238 6.588756 TGTTATCGCTGGTTTTGAAGTAGTAG 59.411 38.462 0.00 0.00 0.00 2.57
1729 2242 6.811253 AATGTTATCGCTGGTTTTGAAGTA 57.189 33.333 0.00 0.00 0.00 2.24
1730 2243 5.705609 AATGTTATCGCTGGTTTTGAAGT 57.294 34.783 0.00 0.00 0.00 3.01
1743 2256 4.437239 ACTCTCTGGCTGAAATGTTATCG 58.563 43.478 0.00 0.00 0.00 2.92
1771 2284 0.179121 CGTCACGCCTGCCAAGTATA 60.179 55.000 0.00 0.00 0.00 1.47
1807 2323 5.310451 ACGTAGTAAAAATCTGCCAAGGAA 58.690 37.500 0.00 0.00 41.94 3.36
1829 2348 1.739067 CCTGCCAAGGTTGCTAGTAC 58.261 55.000 0.00 0.00 38.96 2.73
1862 2395 1.671845 TGCAAGTTTTACCACGACCAC 59.328 47.619 0.00 0.00 0.00 4.16
1892 2425 4.785376 TCTTTGGCTCCTAGATTCCTCTTT 59.215 41.667 0.00 0.00 32.66 2.52
2029 2568 1.743958 CTCAGATACGGAGGTGTCGTT 59.256 52.381 0.00 0.00 39.09 3.85
2043 2582 2.182791 CCACAGCGACGCTCAGAT 59.817 61.111 21.67 2.74 36.40 2.90
2051 2590 4.626081 ACACAGGGCCACAGCGAC 62.626 66.667 6.18 0.00 41.24 5.19
2052 2591 4.624364 CACACAGGGCCACAGCGA 62.624 66.667 6.18 0.00 41.24 4.93
2053 2592 4.935495 ACACACAGGGCCACAGCG 62.935 66.667 6.18 0.00 41.24 5.18
2054 2593 2.519302 AACACACAGGGCCACAGC 60.519 61.111 6.18 0.00 38.76 4.40
2126 2680 1.376037 AGCTTCCAAGTACGCTGCC 60.376 57.895 0.00 0.00 0.00 4.85
2169 2724 1.478137 GACTGATTGCGTAGGCGTAG 58.522 55.000 2.53 1.33 44.10 3.51
2170 2725 0.248336 CGACTGATTGCGTAGGCGTA 60.248 55.000 2.53 0.00 44.10 4.42
2171 2726 1.516386 CGACTGATTGCGTAGGCGT 60.516 57.895 2.53 0.00 44.10 5.68
2172 2727 1.202973 CTCGACTGATTGCGTAGGCG 61.203 60.000 2.53 0.00 46.50 5.52
2173 2728 1.483424 GCTCGACTGATTGCGTAGGC 61.483 60.000 0.00 0.00 40.52 3.93
2174 2729 0.179137 TGCTCGACTGATTGCGTAGG 60.179 55.000 0.00 0.00 0.00 3.18
2175 2730 1.195347 CTGCTCGACTGATTGCGTAG 58.805 55.000 0.00 0.00 0.00 3.51
2176 2731 0.808755 TCTGCTCGACTGATTGCGTA 59.191 50.000 0.00 0.00 0.00 4.42
2177 2732 0.734253 GTCTGCTCGACTGATTGCGT 60.734 55.000 0.31 0.00 39.61 5.24
2178 2733 1.994467 GTCTGCTCGACTGATTGCG 59.006 57.895 0.31 0.00 39.61 4.85
2186 2741 0.179166 CTCTGCTGAGTCTGCTCGAC 60.179 60.000 20.92 0.00 44.48 4.20
2187 2742 1.932011 GCTCTGCTGAGTCTGCTCGA 61.932 60.000 20.92 15.76 44.48 4.04
2188 2743 1.516821 GCTCTGCTGAGTCTGCTCG 60.517 63.158 20.92 12.84 44.48 5.03
2189 2744 0.458889 CTGCTCTGCTGAGTCTGCTC 60.459 60.000 20.92 9.46 42.13 4.26
2190 2745 1.592743 CTGCTCTGCTGAGTCTGCT 59.407 57.895 20.92 0.00 42.13 4.24
2191 2746 2.101835 GCTGCTCTGCTGAGTCTGC 61.102 63.158 20.24 20.51 42.13 4.26
2192 2747 0.108089 ATGCTGCTCTGCTGAGTCTG 60.108 55.000 20.24 16.14 42.13 3.51
2193 2748 0.176219 GATGCTGCTCTGCTGAGTCT 59.824 55.000 20.24 3.06 42.13 3.24
2194 2749 0.810823 GGATGCTGCTCTGCTGAGTC 60.811 60.000 20.24 13.44 42.13 3.36
2195 2750 1.221293 GGATGCTGCTCTGCTGAGT 59.779 57.895 20.24 1.65 42.13 3.41
2196 2751 0.751452 TAGGATGCTGCTCTGCTGAG 59.249 55.000 15.76 15.76 42.96 3.35
2197 2752 2.906268 TAGGATGCTGCTCTGCTGA 58.094 52.632 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.