Multiple sequence alignment - TraesCS3B01G392900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G392900 chr3B 100.000 2690 0 0 1 2690 618439237 618436548 0.000000e+00 4968
1 TraesCS3B01G392900 chr7D 92.887 2179 117 13 548 2690 85019322 85021498 0.000000e+00 3131
2 TraesCS3B01G392900 chr5A 92.255 2182 125 26 548 2690 375292315 375290139 0.000000e+00 3053
3 TraesCS3B01G392900 chr5A 90.789 304 23 5 531 831 459765334 459765635 4.170000e-108 401
4 TraesCS3B01G392900 chr4D 92.148 2165 121 31 548 2678 119369759 119367610 0.000000e+00 3011
5 TraesCS3B01G392900 chr4D 92.833 293 19 2 541 831 481887018 481887310 8.900000e-115 424
6 TraesCS3B01G392900 chr4D 92.657 286 18 3 548 831 486565782 486565498 2.490000e-110 409
7 TraesCS3B01G392900 chr7B 94.450 1892 94 7 808 2690 442357930 442359819 0.000000e+00 2902
8 TraesCS3B01G392900 chr7B 93.594 1889 104 10 816 2690 49223513 49221628 0.000000e+00 2802
9 TraesCS3B01G392900 chr7B 92.657 286 19 2 548 831 549934407 549934122 6.930000e-111 411
10 TraesCS3B01G392900 chr6D 94.447 1873 97 3 819 2690 347439601 347437735 0.000000e+00 2876
11 TraesCS3B01G392900 chr6D 92.657 286 18 3 548 831 347439904 347439620 2.490000e-110 409
12 TraesCS3B01G392900 chr6A 94.074 1890 101 6 808 2690 53152165 53154050 0.000000e+00 2859
13 TraesCS3B01G392900 chr3D 93.977 1876 100 5 816 2690 442774722 442772859 0.000000e+00 2826
14 TraesCS3B01G392900 chr3D 81.606 386 41 11 184 547 465024060 465023683 2.620000e-75 292
15 TraesCS3B01G392900 chr1B 93.717 1878 112 4 817 2689 335764012 335765888 0.000000e+00 2809
16 TraesCS3B01G392900 chr6B 93.103 290 17 3 544 831 680181883 680181595 3.200000e-114 422
17 TraesCS3B01G392900 chr2B 93.571 280 16 2 547 825 396181962 396181684 1.490000e-112 416
18 TraesCS3B01G392900 chr2D 92.361 288 20 2 546 831 50139067 50138780 2.490000e-110 409
19 TraesCS3B01G392900 chr2D 92.361 288 19 3 546 831 498273318 498273604 8.970000e-110 407
20 TraesCS3B01G392900 chr3A 81.912 387 39 16 184 547 608342399 608342021 5.630000e-77 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G392900 chr3B 618436548 618439237 2689 True 4968.0 4968 100.000 1 2690 1 chr3B.!!$R1 2689
1 TraesCS3B01G392900 chr7D 85019322 85021498 2176 False 3131.0 3131 92.887 548 2690 1 chr7D.!!$F1 2142
2 TraesCS3B01G392900 chr5A 375290139 375292315 2176 True 3053.0 3053 92.255 548 2690 1 chr5A.!!$R1 2142
3 TraesCS3B01G392900 chr4D 119367610 119369759 2149 True 3011.0 3011 92.148 548 2678 1 chr4D.!!$R1 2130
4 TraesCS3B01G392900 chr7B 442357930 442359819 1889 False 2902.0 2902 94.450 808 2690 1 chr7B.!!$F1 1882
5 TraesCS3B01G392900 chr7B 49221628 49223513 1885 True 2802.0 2802 93.594 816 2690 1 chr7B.!!$R1 1874
6 TraesCS3B01G392900 chr6D 347437735 347439904 2169 True 1642.5 2876 93.552 548 2690 2 chr6D.!!$R1 2142
7 TraesCS3B01G392900 chr6A 53152165 53154050 1885 False 2859.0 2859 94.074 808 2690 1 chr6A.!!$F1 1882
8 TraesCS3B01G392900 chr3D 442772859 442774722 1863 True 2826.0 2826 93.977 816 2690 1 chr3D.!!$R1 1874
9 TraesCS3B01G392900 chr1B 335764012 335765888 1876 False 2809.0 2809 93.717 817 2689 1 chr1B.!!$F1 1872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 569 0.031994 GCGTGTTTGGTTTCCTGCAT 59.968 50.0 0.0 0.0 0.0 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2260 2324 0.375106 GCCAGAGCTAACAACATCGC 59.625 55.0 0.0 0.0 35.5 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.888834 GAAGCAAAGCCTTCCACAAA 57.111 45.000 0.00 0.00 36.15 2.83
26 27 2.473816 GAAGCAAAGCCTTCCACAAAC 58.526 47.619 0.00 0.00 36.15 2.93
27 28 0.385390 AGCAAAGCCTTCCACAAACG 59.615 50.000 0.00 0.00 0.00 3.60
28 29 0.383949 GCAAAGCCTTCCACAAACGA 59.616 50.000 0.00 0.00 0.00 3.85
29 30 1.600413 GCAAAGCCTTCCACAAACGAG 60.600 52.381 0.00 0.00 0.00 4.18
30 31 1.676006 CAAAGCCTTCCACAAACGAGT 59.324 47.619 0.00 0.00 0.00 4.18
31 32 2.052782 AAGCCTTCCACAAACGAGTT 57.947 45.000 0.00 0.00 0.00 3.01
32 33 1.308998 AGCCTTCCACAAACGAGTTG 58.691 50.000 0.00 0.00 43.43 3.16
49 50 1.896220 TTGTCCATGACAAGGCTGAC 58.104 50.000 5.59 0.00 45.88 3.51
50 51 1.059098 TGTCCATGACAAGGCTGACT 58.941 50.000 0.00 0.00 39.78 3.41
51 52 1.002430 TGTCCATGACAAGGCTGACTC 59.998 52.381 0.00 0.00 39.78 3.36
52 53 0.615331 TCCATGACAAGGCTGACTCC 59.385 55.000 0.00 0.00 0.00 3.85
53 54 0.617413 CCATGACAAGGCTGACTCCT 59.383 55.000 0.00 0.00 38.31 3.69
54 55 1.678123 CCATGACAAGGCTGACTCCTG 60.678 57.143 0.00 0.00 36.38 3.86
55 56 1.277273 CATGACAAGGCTGACTCCTGA 59.723 52.381 0.00 0.00 36.38 3.86
56 57 0.681733 TGACAAGGCTGACTCCTGAC 59.318 55.000 0.00 0.00 36.38 3.51
57 58 0.681733 GACAAGGCTGACTCCTGACA 59.318 55.000 0.00 0.00 36.38 3.58
58 59 1.277557 GACAAGGCTGACTCCTGACAT 59.722 52.381 0.00 0.00 36.38 3.06
59 60 2.497675 GACAAGGCTGACTCCTGACATA 59.502 50.000 0.00 0.00 36.38 2.29
60 61 2.499289 ACAAGGCTGACTCCTGACATAG 59.501 50.000 0.00 0.00 36.38 2.23
62 63 0.105778 GGCTGACTCCTGACATAGGC 59.894 60.000 0.00 0.00 46.87 3.93
63 64 0.826715 GCTGACTCCTGACATAGGCA 59.173 55.000 0.00 0.00 46.87 4.75
64 65 1.415659 GCTGACTCCTGACATAGGCAT 59.584 52.381 0.00 0.00 46.87 4.40
65 66 2.806019 GCTGACTCCTGACATAGGCATG 60.806 54.545 0.00 0.00 46.87 4.06
66 67 1.764723 TGACTCCTGACATAGGCATGG 59.235 52.381 0.00 0.00 46.87 3.66
67 68 1.765314 GACTCCTGACATAGGCATGGT 59.235 52.381 0.00 0.00 46.87 3.55
68 69 2.965831 GACTCCTGACATAGGCATGGTA 59.034 50.000 0.00 0.00 46.87 3.25
69 70 3.580458 GACTCCTGACATAGGCATGGTAT 59.420 47.826 0.00 0.00 46.87 2.73
70 71 3.326006 ACTCCTGACATAGGCATGGTATG 59.674 47.826 0.00 0.00 46.87 2.39
91 92 2.464865 CGAGTCAATCGTGAAGATCCC 58.535 52.381 0.00 0.00 46.62 3.85
92 93 2.464865 GAGTCAATCGTGAAGATCCCG 58.535 52.381 0.00 0.00 38.98 5.14
93 94 1.137086 AGTCAATCGTGAAGATCCCGG 59.863 52.381 0.00 0.00 38.98 5.73
94 95 1.136305 GTCAATCGTGAAGATCCCGGA 59.864 52.381 0.73 0.00 38.98 5.14
95 96 1.136305 TCAATCGTGAAGATCCCGGAC 59.864 52.381 0.73 0.00 38.98 4.79
96 97 0.102481 AATCGTGAAGATCCCGGACG 59.898 55.000 0.73 2.41 38.98 4.79
97 98 1.035932 ATCGTGAAGATCCCGGACGT 61.036 55.000 0.73 0.00 33.45 4.34
98 99 1.516386 CGTGAAGATCCCGGACGTG 60.516 63.158 0.73 0.00 0.00 4.49
99 100 1.153628 GTGAAGATCCCGGACGTGG 60.154 63.158 0.73 0.00 0.00 4.94
100 101 1.608336 TGAAGATCCCGGACGTGGT 60.608 57.895 0.73 0.00 0.00 4.16
101 102 1.189524 TGAAGATCCCGGACGTGGTT 61.190 55.000 0.73 0.00 0.00 3.67
102 103 0.819582 GAAGATCCCGGACGTGGTTA 59.180 55.000 0.73 0.00 0.00 2.85
103 104 0.822164 AAGATCCCGGACGTGGTTAG 59.178 55.000 0.73 0.00 0.00 2.34
104 105 1.227176 GATCCCGGACGTGGTTAGC 60.227 63.158 0.73 0.00 0.00 3.09
105 106 1.673808 GATCCCGGACGTGGTTAGCT 61.674 60.000 0.73 0.00 0.00 3.32
106 107 1.956629 ATCCCGGACGTGGTTAGCTG 61.957 60.000 0.73 0.00 0.00 4.24
107 108 2.813908 CCGGACGTGGTTAGCTGC 60.814 66.667 0.00 0.00 0.00 5.25
108 109 3.179265 CGGACGTGGTTAGCTGCG 61.179 66.667 0.00 0.00 0.00 5.18
109 110 2.260434 GGACGTGGTTAGCTGCGA 59.740 61.111 0.00 0.00 0.00 5.10
110 111 1.373748 GGACGTGGTTAGCTGCGAA 60.374 57.895 0.00 0.00 0.00 4.70
111 112 1.352156 GGACGTGGTTAGCTGCGAAG 61.352 60.000 0.00 0.00 0.00 3.79
112 113 0.388134 GACGTGGTTAGCTGCGAAGA 60.388 55.000 0.00 0.00 0.00 2.87
113 114 0.032952 ACGTGGTTAGCTGCGAAGAA 59.967 50.000 0.00 0.00 0.00 2.52
114 115 1.144969 CGTGGTTAGCTGCGAAGAAA 58.855 50.000 0.00 0.00 0.00 2.52
115 116 1.136336 CGTGGTTAGCTGCGAAGAAAC 60.136 52.381 0.00 0.00 0.00 2.78
116 117 1.871039 GTGGTTAGCTGCGAAGAAACA 59.129 47.619 10.29 0.00 0.00 2.83
117 118 2.289547 GTGGTTAGCTGCGAAGAAACAA 59.710 45.455 10.29 0.00 0.00 2.83
118 119 2.289547 TGGTTAGCTGCGAAGAAACAAC 59.710 45.455 10.29 1.20 0.00 3.32
119 120 2.289547 GGTTAGCTGCGAAGAAACAACA 59.710 45.455 10.29 0.00 0.00 3.33
120 121 3.058224 GGTTAGCTGCGAAGAAACAACAT 60.058 43.478 10.29 0.00 0.00 2.71
121 122 2.977405 AGCTGCGAAGAAACAACATC 57.023 45.000 0.00 0.00 0.00 3.06
122 123 1.537202 AGCTGCGAAGAAACAACATCC 59.463 47.619 0.00 0.00 0.00 3.51
123 124 1.266718 GCTGCGAAGAAACAACATCCA 59.733 47.619 0.00 0.00 0.00 3.41
124 125 2.095059 GCTGCGAAGAAACAACATCCAT 60.095 45.455 0.00 0.00 0.00 3.41
125 126 3.126858 GCTGCGAAGAAACAACATCCATA 59.873 43.478 0.00 0.00 0.00 2.74
126 127 4.201950 GCTGCGAAGAAACAACATCCATAT 60.202 41.667 0.00 0.00 0.00 1.78
127 128 5.007626 GCTGCGAAGAAACAACATCCATATA 59.992 40.000 0.00 0.00 0.00 0.86
128 129 6.603237 TGCGAAGAAACAACATCCATATAG 57.397 37.500 0.00 0.00 0.00 1.31
129 130 6.112734 TGCGAAGAAACAACATCCATATAGT 58.887 36.000 0.00 0.00 0.00 2.12
130 131 6.257849 TGCGAAGAAACAACATCCATATAGTC 59.742 38.462 0.00 0.00 0.00 2.59
131 132 6.562270 GCGAAGAAACAACATCCATATAGTCG 60.562 42.308 0.00 0.00 0.00 4.18
132 133 6.475727 CGAAGAAACAACATCCATATAGTCGT 59.524 38.462 0.00 0.00 0.00 4.34
133 134 7.306051 CGAAGAAACAACATCCATATAGTCGTC 60.306 40.741 0.00 0.00 0.00 4.20
134 135 6.281405 AGAAACAACATCCATATAGTCGTCC 58.719 40.000 0.00 0.00 0.00 4.79
135 136 4.238761 ACAACATCCATATAGTCGTCCG 57.761 45.455 0.00 0.00 0.00 4.79
136 137 3.005472 ACAACATCCATATAGTCGTCCGG 59.995 47.826 0.00 0.00 0.00 5.14
137 138 1.544691 ACATCCATATAGTCGTCCGGC 59.455 52.381 0.00 0.00 0.00 6.13
138 139 1.544246 CATCCATATAGTCGTCCGGCA 59.456 52.381 0.00 0.00 0.00 5.69
139 140 1.919240 TCCATATAGTCGTCCGGCAT 58.081 50.000 0.00 0.00 0.00 4.40
140 141 1.816835 TCCATATAGTCGTCCGGCATC 59.183 52.381 0.00 0.00 0.00 3.91
141 142 1.467543 CCATATAGTCGTCCGGCATCG 60.468 57.143 0.00 1.35 0.00 3.84
142 143 0.170561 ATATAGTCGTCCGGCATCGC 59.829 55.000 0.00 0.00 34.56 4.58
143 144 1.167781 TATAGTCGTCCGGCATCGCA 61.168 55.000 0.00 0.00 34.56 5.10
144 145 2.011741 ATAGTCGTCCGGCATCGCAA 62.012 55.000 0.00 0.00 34.56 4.85
145 146 2.607668 TAGTCGTCCGGCATCGCAAG 62.608 60.000 0.00 0.00 34.56 4.01
146 147 4.812476 TCGTCCGGCATCGCAAGG 62.812 66.667 0.00 0.00 38.47 3.61
147 148 4.812476 CGTCCGGCATCGCAAGGA 62.812 66.667 0.00 0.00 35.30 3.36
148 149 2.892425 GTCCGGCATCGCAAGGAG 60.892 66.667 0.00 0.00 37.51 3.69
149 150 4.161295 TCCGGCATCGCAAGGAGG 62.161 66.667 0.00 0.00 33.44 4.30
159 160 4.020617 CAAGGAGGGCCGCACTCA 62.021 66.667 23.91 0.00 39.96 3.41
160 161 3.249189 AAGGAGGGCCGCACTCAA 61.249 61.111 23.91 0.00 39.96 3.02
161 162 2.606587 AAGGAGGGCCGCACTCAAT 61.607 57.895 23.91 9.28 39.96 2.57
162 163 2.044946 GGAGGGCCGCACTCAATT 60.045 61.111 23.91 0.00 36.70 2.32
163 164 2.115291 GGAGGGCCGCACTCAATTC 61.115 63.158 23.91 2.88 36.70 2.17
164 165 2.436646 AGGGCCGCACTCAATTCG 60.437 61.111 0.00 0.00 0.00 3.34
165 166 3.508840 GGGCCGCACTCAATTCGG 61.509 66.667 0.00 0.00 45.46 4.30
166 167 2.746277 GGCCGCACTCAATTCGGT 60.746 61.111 4.66 0.00 44.58 4.69
167 168 2.332654 GGCCGCACTCAATTCGGTT 61.333 57.895 4.66 0.00 44.58 4.44
168 169 1.134694 GCCGCACTCAATTCGGTTC 59.865 57.895 4.66 0.00 44.58 3.62
169 170 1.573829 GCCGCACTCAATTCGGTTCA 61.574 55.000 4.66 0.00 44.58 3.18
170 171 0.165944 CCGCACTCAATTCGGTTCAC 59.834 55.000 0.00 0.00 38.47 3.18
171 172 0.179250 CGCACTCAATTCGGTTCACG 60.179 55.000 0.00 0.00 46.11 4.35
172 173 0.865769 GCACTCAATTCGGTTCACGT 59.134 50.000 0.00 0.00 44.69 4.49
173 174 1.136336 GCACTCAATTCGGTTCACGTC 60.136 52.381 0.00 0.00 44.69 4.34
174 175 2.404215 CACTCAATTCGGTTCACGTCT 58.596 47.619 0.00 0.00 44.69 4.18
175 176 2.408704 CACTCAATTCGGTTCACGTCTC 59.591 50.000 0.00 0.00 44.69 3.36
176 177 1.993370 CTCAATTCGGTTCACGTCTCC 59.007 52.381 0.00 0.00 44.69 3.71
177 178 0.713883 CAATTCGGTTCACGTCTCCG 59.286 55.000 13.98 13.98 44.69 4.63
178 179 0.389426 AATTCGGTTCACGTCTCCGG 60.389 55.000 18.12 0.00 43.75 5.14
179 180 2.830704 ATTCGGTTCACGTCTCCGGC 62.831 60.000 18.12 0.00 43.75 6.13
180 181 4.351938 CGGTTCACGTCTCCGGCA 62.352 66.667 12.78 0.00 40.49 5.69
181 182 2.264794 GGTTCACGTCTCCGGCAT 59.735 61.111 0.00 0.00 38.78 4.40
182 183 1.810030 GGTTCACGTCTCCGGCATC 60.810 63.158 0.00 0.00 38.78 3.91
183 184 2.158959 GTTCACGTCTCCGGCATCG 61.159 63.158 0.00 3.27 38.78 3.84
184 185 3.982372 TTCACGTCTCCGGCATCGC 62.982 63.158 0.00 0.00 38.78 4.58
185 186 4.794439 CACGTCTCCGGCATCGCA 62.794 66.667 0.00 0.00 38.78 5.10
186 187 3.838271 ACGTCTCCGGCATCGCAT 61.838 61.111 0.00 0.00 38.78 4.73
187 188 3.333189 CGTCTCCGGCATCGCATG 61.333 66.667 0.00 0.00 34.56 4.06
188 189 2.969238 GTCTCCGGCATCGCATGG 60.969 66.667 0.00 0.00 34.56 3.66
189 190 4.240103 TCTCCGGCATCGCATGGG 62.240 66.667 2.76 2.76 34.56 4.00
193 194 4.552365 CGGCATCGCATGGGGTCT 62.552 66.667 10.21 0.00 0.00 3.85
194 195 2.903855 GGCATCGCATGGGGTCTG 60.904 66.667 10.21 6.72 0.00 3.51
195 196 2.190313 GCATCGCATGGGGTCTGA 59.810 61.111 10.21 0.00 0.00 3.27
196 197 1.890979 GCATCGCATGGGGTCTGAG 60.891 63.158 10.21 0.00 0.00 3.35
197 198 1.890979 CATCGCATGGGGTCTGAGC 60.891 63.158 10.21 0.00 0.00 4.26
198 199 2.369633 ATCGCATGGGGTCTGAGCA 61.370 57.895 10.21 0.00 0.00 4.26
199 200 2.321263 ATCGCATGGGGTCTGAGCAG 62.321 60.000 10.21 0.00 0.00 4.24
200 201 2.993008 GCATGGGGTCTGAGCAGA 59.007 61.111 9.30 0.00 34.56 4.26
201 202 1.530771 GCATGGGGTCTGAGCAGAT 59.469 57.895 9.30 0.00 39.97 2.90
202 203 0.106819 GCATGGGGTCTGAGCAGATT 60.107 55.000 9.30 0.00 39.97 2.40
203 204 1.676746 CATGGGGTCTGAGCAGATTG 58.323 55.000 9.30 0.00 39.97 2.67
204 205 0.106819 ATGGGGTCTGAGCAGATTGC 60.107 55.000 9.30 0.00 45.46 3.56
215 216 3.777465 AGCAGATTGCAAACATGCTAG 57.223 42.857 25.83 5.07 45.73 3.42
216 217 3.349927 AGCAGATTGCAAACATGCTAGA 58.650 40.909 25.83 0.00 45.73 2.43
217 218 3.377485 AGCAGATTGCAAACATGCTAGAG 59.623 43.478 25.83 2.52 45.73 2.43
218 219 3.376234 GCAGATTGCAAACATGCTAGAGA 59.624 43.478 20.40 0.00 44.26 3.10
219 220 4.142534 GCAGATTGCAAACATGCTAGAGAA 60.143 41.667 20.40 0.00 44.26 2.87
220 221 5.450137 GCAGATTGCAAACATGCTAGAGAAT 60.450 40.000 20.40 0.00 44.26 2.40
221 222 6.561614 CAGATTGCAAACATGCTAGAGAATT 58.438 36.000 1.71 0.00 35.49 2.17
222 223 7.033791 CAGATTGCAAACATGCTAGAGAATTT 58.966 34.615 1.71 0.00 35.49 1.82
223 224 7.009265 CAGATTGCAAACATGCTAGAGAATTTG 59.991 37.037 1.71 0.00 35.49 2.32
225 226 4.487948 GCAAACATGCTAGAGAATTTGCA 58.512 39.130 20.79 0.00 46.95 4.08
226 227 4.925054 GCAAACATGCTAGAGAATTTGCAA 59.075 37.500 20.79 0.00 46.95 4.08
227 228 5.406175 GCAAACATGCTAGAGAATTTGCAAA 59.594 36.000 15.44 15.44 46.95 3.68
228 229 6.400727 GCAAACATGCTAGAGAATTTGCAAAG 60.401 38.462 18.19 2.76 46.95 2.77
229 230 4.741342 ACATGCTAGAGAATTTGCAAAGC 58.259 39.130 18.19 13.49 38.96 3.51
230 231 4.461781 ACATGCTAGAGAATTTGCAAAGCT 59.538 37.500 18.19 16.37 38.96 3.74
231 232 4.430137 TGCTAGAGAATTTGCAAAGCTG 57.570 40.909 18.19 7.06 32.12 4.24
232 233 3.192001 TGCTAGAGAATTTGCAAAGCTGG 59.808 43.478 18.19 13.70 32.12 4.85
233 234 3.441572 GCTAGAGAATTTGCAAAGCTGGA 59.558 43.478 18.19 6.57 0.00 3.86
234 235 3.930634 AGAGAATTTGCAAAGCTGGAC 57.069 42.857 18.19 6.85 0.00 4.02
235 236 2.560105 AGAGAATTTGCAAAGCTGGACC 59.440 45.455 18.19 5.76 0.00 4.46
236 237 1.620323 AGAATTTGCAAAGCTGGACCC 59.380 47.619 18.19 0.77 0.00 4.46
237 238 1.620323 GAATTTGCAAAGCTGGACCCT 59.380 47.619 18.19 0.00 0.00 4.34
238 239 1.720781 ATTTGCAAAGCTGGACCCTT 58.279 45.000 18.19 0.00 0.00 3.95
239 240 1.494960 TTTGCAAAGCTGGACCCTTT 58.505 45.000 8.05 0.00 33.03 3.11
240 241 1.039856 TTGCAAAGCTGGACCCTTTC 58.960 50.000 0.00 0.00 30.52 2.62
241 242 0.106268 TGCAAAGCTGGACCCTTTCA 60.106 50.000 0.00 0.00 30.52 2.69
242 243 1.039856 GCAAAGCTGGACCCTTTCAA 58.960 50.000 0.00 0.00 30.52 2.69
243 244 1.000171 GCAAAGCTGGACCCTTTCAAG 60.000 52.381 0.00 0.00 30.52 3.02
245 246 3.686760 GCTGGACCCTTTCAAGCC 58.313 61.111 0.00 0.00 44.86 4.35
246 247 1.228552 GCTGGACCCTTTCAAGCCA 60.229 57.895 0.00 0.00 44.86 4.75
247 248 0.613012 GCTGGACCCTTTCAAGCCAT 60.613 55.000 0.00 0.00 44.86 4.40
248 249 1.180029 CTGGACCCTTTCAAGCCATG 58.820 55.000 0.00 0.00 0.00 3.66
249 250 0.251742 TGGACCCTTTCAAGCCATGG 60.252 55.000 7.63 7.63 0.00 3.66
250 251 0.039618 GGACCCTTTCAAGCCATGGA 59.960 55.000 18.40 0.00 0.00 3.41
251 252 1.342374 GGACCCTTTCAAGCCATGGAT 60.342 52.381 18.40 6.18 0.00 3.41
252 253 2.027385 GACCCTTTCAAGCCATGGATC 58.973 52.381 18.40 0.00 0.00 3.36
253 254 1.342374 ACCCTTTCAAGCCATGGATCC 60.342 52.381 18.40 4.20 0.00 3.36
254 255 1.342275 CCCTTTCAAGCCATGGATCCA 60.342 52.381 18.88 18.88 0.00 3.41
255 256 2.459644 CCTTTCAAGCCATGGATCCAA 58.540 47.619 20.67 2.20 0.00 3.53
256 257 2.167075 CCTTTCAAGCCATGGATCCAAC 59.833 50.000 20.67 11.58 0.00 3.77
257 258 1.851304 TTCAAGCCATGGATCCAACC 58.149 50.000 20.67 9.97 0.00 3.77
258 259 0.703488 TCAAGCCATGGATCCAACCA 59.297 50.000 20.67 0.00 44.41 3.67
259 260 1.108776 CAAGCCATGGATCCAACCAG 58.891 55.000 20.67 8.86 43.49 4.00
260 261 1.002069 AAGCCATGGATCCAACCAGA 58.998 50.000 20.67 0.00 43.49 3.86
261 262 1.002069 AGCCATGGATCCAACCAGAA 58.998 50.000 20.67 0.00 43.49 3.02
262 263 1.358787 AGCCATGGATCCAACCAGAAA 59.641 47.619 20.67 0.00 43.49 2.52
263 264 2.178580 GCCATGGATCCAACCAGAAAA 58.821 47.619 20.67 0.00 43.49 2.29
264 265 2.167075 GCCATGGATCCAACCAGAAAAG 59.833 50.000 20.67 1.05 43.49 2.27
265 266 2.762327 CCATGGATCCAACCAGAAAAGG 59.238 50.000 20.67 5.92 43.49 3.11
266 267 2.603075 TGGATCCAACCAGAAAAGGG 57.397 50.000 13.46 0.00 34.77 3.95
267 268 2.069775 TGGATCCAACCAGAAAAGGGA 58.930 47.619 13.46 0.00 34.77 4.20
268 269 2.225017 TGGATCCAACCAGAAAAGGGAC 60.225 50.000 13.46 0.00 34.77 4.46
269 270 2.447443 GATCCAACCAGAAAAGGGACC 58.553 52.381 0.00 0.00 0.00 4.46
270 271 0.481128 TCCAACCAGAAAAGGGACCC 59.519 55.000 0.59 0.59 0.00 4.46
271 272 0.482887 CCAACCAGAAAAGGGACCCT 59.517 55.000 7.44 7.44 33.87 4.34
273 274 2.239400 CAACCAGAAAAGGGACCCTTC 58.761 52.381 26.44 15.04 43.92 3.46
274 275 1.834540 ACCAGAAAAGGGACCCTTCT 58.165 50.000 26.44 17.20 43.92 2.85
275 276 2.144450 ACCAGAAAAGGGACCCTTCTT 58.856 47.619 26.44 20.36 43.92 2.52
276 277 2.108425 ACCAGAAAAGGGACCCTTCTTC 59.892 50.000 26.44 25.89 43.92 2.87
277 278 2.108250 CCAGAAAAGGGACCCTTCTTCA 59.892 50.000 29.90 0.00 43.92 3.02
278 279 3.245407 CCAGAAAAGGGACCCTTCTTCAT 60.245 47.826 29.90 20.25 43.92 2.57
279 280 4.411013 CAGAAAAGGGACCCTTCTTCATT 58.589 43.478 29.90 21.37 43.92 2.57
280 281 4.460731 CAGAAAAGGGACCCTTCTTCATTC 59.539 45.833 29.90 25.83 43.92 2.67
281 282 3.458044 AAAGGGACCCTTCTTCATTCC 57.542 47.619 26.44 0.00 43.92 3.01
282 283 1.299939 AGGGACCCTTCTTCATTCCC 58.700 55.000 7.44 0.00 45.71 3.97
283 284 1.299939 GGGACCCTTCTTCATTCCCT 58.700 55.000 2.09 0.00 42.52 4.20
284 285 1.064389 GGGACCCTTCTTCATTCCCTG 60.064 57.143 2.09 0.00 42.52 4.45
285 286 1.636003 GGACCCTTCTTCATTCCCTGT 59.364 52.381 0.00 0.00 0.00 4.00
286 287 2.619074 GGACCCTTCTTCATTCCCTGTG 60.619 54.545 0.00 0.00 0.00 3.66
287 288 2.305927 GACCCTTCTTCATTCCCTGTGA 59.694 50.000 0.00 0.00 0.00 3.58
288 289 2.716424 ACCCTTCTTCATTCCCTGTGAA 59.284 45.455 0.00 0.00 37.38 3.18
294 295 3.703001 TTCATTCCCTGTGAAGAGACC 57.297 47.619 0.00 0.00 36.14 3.85
295 296 2.619931 TCATTCCCTGTGAAGAGACCA 58.380 47.619 0.00 0.00 36.14 4.02
296 297 2.303022 TCATTCCCTGTGAAGAGACCAC 59.697 50.000 0.00 0.00 36.14 4.16
297 298 2.103153 TTCCCTGTGAAGAGACCACT 57.897 50.000 0.00 0.00 35.66 4.00
298 299 1.633774 TCCCTGTGAAGAGACCACTC 58.366 55.000 0.00 0.00 42.90 3.51
299 300 0.610687 CCCTGTGAAGAGACCACTCC 59.389 60.000 0.00 0.00 43.53 3.85
300 301 0.610687 CCTGTGAAGAGACCACTCCC 59.389 60.000 0.00 0.00 43.53 4.30
301 302 1.342074 CTGTGAAGAGACCACTCCCA 58.658 55.000 0.00 0.00 43.53 4.37
302 303 1.694150 CTGTGAAGAGACCACTCCCAA 59.306 52.381 0.00 0.00 43.53 4.12
303 304 1.694150 TGTGAAGAGACCACTCCCAAG 59.306 52.381 0.00 0.00 43.53 3.61
304 305 0.687354 TGAAGAGACCACTCCCAAGC 59.313 55.000 0.00 0.00 43.53 4.01
305 306 0.035915 GAAGAGACCACTCCCAAGCC 60.036 60.000 0.00 0.00 43.53 4.35
306 307 1.831652 AAGAGACCACTCCCAAGCCG 61.832 60.000 0.00 0.00 43.53 5.52
307 308 3.316573 GAGACCACTCCCAAGCCGG 62.317 68.421 0.00 0.00 37.19 6.13
308 309 3.319198 GACCACTCCCAAGCCGGA 61.319 66.667 5.05 0.00 36.56 5.14
314 315 4.480480 TCCCAAGCCGGAGAGATT 57.520 55.556 5.05 0.00 36.56 2.40
315 316 2.696864 TCCCAAGCCGGAGAGATTT 58.303 52.632 5.05 0.00 36.56 2.17
316 317 0.541863 TCCCAAGCCGGAGAGATTTC 59.458 55.000 5.05 0.00 36.56 2.17
317 318 0.464554 CCCAAGCCGGAGAGATTTCC 60.465 60.000 5.05 0.00 36.56 3.13
318 319 0.253044 CCAAGCCGGAGAGATTTCCA 59.747 55.000 5.05 0.00 37.05 3.53
319 320 1.661341 CAAGCCGGAGAGATTTCCAG 58.339 55.000 5.05 0.00 37.05 3.86
320 321 1.208052 CAAGCCGGAGAGATTTCCAGA 59.792 52.381 5.05 0.00 37.05 3.86
321 322 1.573108 AGCCGGAGAGATTTCCAGAA 58.427 50.000 5.05 0.00 37.05 3.02
322 323 2.122768 AGCCGGAGAGATTTCCAGAAT 58.877 47.619 5.05 0.00 37.05 2.40
323 324 2.103941 AGCCGGAGAGATTTCCAGAATC 59.896 50.000 5.05 0.00 37.05 2.52
324 325 2.158900 GCCGGAGAGATTTCCAGAATCA 60.159 50.000 5.05 0.00 37.05 2.57
325 326 3.726607 CCGGAGAGATTTCCAGAATCAG 58.273 50.000 0.00 0.00 37.05 2.90
326 327 3.386078 CCGGAGAGATTTCCAGAATCAGA 59.614 47.826 0.00 0.00 37.05 3.27
327 328 4.040217 CCGGAGAGATTTCCAGAATCAGAT 59.960 45.833 0.00 0.00 37.05 2.90
328 329 5.229423 CGGAGAGATTTCCAGAATCAGATC 58.771 45.833 2.07 0.00 37.05 2.75
329 330 5.010922 CGGAGAGATTTCCAGAATCAGATCT 59.989 44.000 0.00 0.00 37.05 2.75
330 331 6.225318 GGAGAGATTTCCAGAATCAGATCTG 58.775 44.000 17.07 17.07 45.19 2.90
336 337 2.151881 CAGAATCAGATCTGGGAGCG 57.848 55.000 22.42 5.53 42.52 5.03
337 338 0.392336 AGAATCAGATCTGGGAGCGC 59.608 55.000 22.42 0.00 0.00 5.92
338 339 0.392336 GAATCAGATCTGGGAGCGCT 59.608 55.000 22.42 11.27 0.00 5.92
339 340 0.392336 AATCAGATCTGGGAGCGCTC 59.608 55.000 29.38 29.38 0.00 5.03
348 349 4.637873 GGAGCGCTCCTTACGATC 57.362 61.111 42.50 18.64 46.16 3.69
350 351 2.874709 GAGCGCTCCTTACGATCAC 58.125 57.895 27.22 0.00 44.80 3.06
351 352 0.100682 GAGCGCTCCTTACGATCACA 59.899 55.000 27.22 0.00 44.80 3.58
352 353 0.101399 AGCGCTCCTTACGATCACAG 59.899 55.000 2.64 0.00 0.00 3.66
353 354 0.100682 GCGCTCCTTACGATCACAGA 59.899 55.000 0.00 0.00 0.00 3.41
354 355 1.828832 CGCTCCTTACGATCACAGAC 58.171 55.000 0.00 0.00 0.00 3.51
355 356 1.402259 CGCTCCTTACGATCACAGACT 59.598 52.381 0.00 0.00 0.00 3.24
356 357 2.612672 CGCTCCTTACGATCACAGACTA 59.387 50.000 0.00 0.00 0.00 2.59
357 358 3.303461 CGCTCCTTACGATCACAGACTAG 60.303 52.174 0.00 0.00 0.00 2.57
358 359 3.003897 GCTCCTTACGATCACAGACTAGG 59.996 52.174 0.00 0.00 0.00 3.02
359 360 4.452825 CTCCTTACGATCACAGACTAGGA 58.547 47.826 0.00 0.00 0.00 2.94
360 361 4.452825 TCCTTACGATCACAGACTAGGAG 58.547 47.826 0.00 0.00 0.00 3.69
361 362 3.566322 CCTTACGATCACAGACTAGGAGG 59.434 52.174 0.00 0.00 0.00 4.30
362 363 4.452825 CTTACGATCACAGACTAGGAGGA 58.547 47.826 0.00 0.00 0.00 3.71
363 364 2.925724 ACGATCACAGACTAGGAGGAG 58.074 52.381 0.00 0.00 0.00 3.69
364 365 2.506231 ACGATCACAGACTAGGAGGAGA 59.494 50.000 0.00 0.00 0.00 3.71
365 366 2.875933 CGATCACAGACTAGGAGGAGAC 59.124 54.545 0.00 0.00 0.00 3.36
366 367 2.404923 TCACAGACTAGGAGGAGACG 57.595 55.000 0.00 0.00 0.00 4.18
367 368 1.907255 TCACAGACTAGGAGGAGACGA 59.093 52.381 0.00 0.00 0.00 4.20
368 369 2.011222 CACAGACTAGGAGGAGACGAC 58.989 57.143 0.00 0.00 0.00 4.34
369 370 1.065272 ACAGACTAGGAGGAGACGACC 60.065 57.143 0.00 0.00 0.00 4.79
370 371 1.065345 CAGACTAGGAGGAGACGACCA 60.065 57.143 0.00 0.00 34.87 4.02
371 372 1.847737 AGACTAGGAGGAGACGACCAT 59.152 52.381 0.00 0.00 34.87 3.55
372 373 1.950909 GACTAGGAGGAGACGACCATG 59.049 57.143 0.00 0.00 34.87 3.66
373 374 0.671251 CTAGGAGGAGACGACCATGC 59.329 60.000 0.00 0.00 34.87 4.06
374 375 0.033503 TAGGAGGAGACGACCATGCA 60.034 55.000 0.00 0.00 34.87 3.96
375 376 0.689080 AGGAGGAGACGACCATGCAT 60.689 55.000 0.00 0.00 34.87 3.96
376 377 1.040646 GGAGGAGACGACCATGCATA 58.959 55.000 0.00 0.00 0.00 3.14
377 378 1.620819 GGAGGAGACGACCATGCATAT 59.379 52.381 0.00 0.00 0.00 1.78
378 379 2.826128 GGAGGAGACGACCATGCATATA 59.174 50.000 0.00 0.00 0.00 0.86
379 380 3.449018 GGAGGAGACGACCATGCATATAT 59.551 47.826 0.00 0.00 0.00 0.86
380 381 4.081420 GGAGGAGACGACCATGCATATATT 60.081 45.833 0.00 0.00 0.00 1.28
381 382 5.482908 GAGGAGACGACCATGCATATATTT 58.517 41.667 0.00 0.00 0.00 1.40
382 383 6.351033 GGAGGAGACGACCATGCATATATTTA 60.351 42.308 0.00 0.00 0.00 1.40
383 384 6.634805 AGGAGACGACCATGCATATATTTAG 58.365 40.000 0.00 0.00 0.00 1.85
384 385 5.292101 GGAGACGACCATGCATATATTTAGC 59.708 44.000 0.00 0.00 0.00 3.09
385 386 6.042638 AGACGACCATGCATATATTTAGCT 57.957 37.500 0.00 0.00 0.00 3.32
386 387 6.467677 AGACGACCATGCATATATTTAGCTT 58.532 36.000 0.00 0.00 0.00 3.74
387 388 6.936900 AGACGACCATGCATATATTTAGCTTT 59.063 34.615 0.00 0.00 0.00 3.51
388 389 8.094548 AGACGACCATGCATATATTTAGCTTTA 58.905 33.333 0.00 0.00 0.00 1.85
389 390 8.615878 ACGACCATGCATATATTTAGCTTTAA 57.384 30.769 0.00 0.00 0.00 1.52
390 391 9.231297 ACGACCATGCATATATTTAGCTTTAAT 57.769 29.630 0.00 0.00 0.00 1.40
402 403 6.582677 TTTAGCTTTAATAAGTTGCAGCCA 57.417 33.333 0.00 0.00 33.74 4.75
403 404 6.773976 TTAGCTTTAATAAGTTGCAGCCAT 57.226 33.333 0.00 0.00 33.74 4.40
404 405 7.873719 TTAGCTTTAATAAGTTGCAGCCATA 57.126 32.000 0.00 0.00 33.74 2.74
405 406 6.773976 AGCTTTAATAAGTTGCAGCCATAA 57.226 33.333 0.00 0.00 33.74 1.90
406 407 6.799512 AGCTTTAATAAGTTGCAGCCATAAG 58.200 36.000 0.00 0.00 33.74 1.73
407 408 5.460091 GCTTTAATAAGTTGCAGCCATAAGC 59.540 40.000 0.00 1.38 36.24 3.09
408 409 5.514274 TTAATAAGTTGCAGCCATAAGCC 57.486 39.130 0.00 0.00 45.47 4.35
409 410 1.762708 TAAGTTGCAGCCATAAGCCC 58.237 50.000 0.00 0.00 45.47 5.19
410 411 0.972471 AAGTTGCAGCCATAAGCCCC 60.972 55.000 0.00 0.00 45.47 5.80
411 412 2.043046 TTGCAGCCATAAGCCCCC 60.043 61.111 0.00 0.00 45.47 5.40
436 437 6.662865 TCATCTATGAGAATCTTCCAGACC 57.337 41.667 0.00 0.00 34.92 3.85
437 438 6.138967 TCATCTATGAGAATCTTCCAGACCA 58.861 40.000 0.00 0.00 34.92 4.02
438 439 6.612863 TCATCTATGAGAATCTTCCAGACCAA 59.387 38.462 0.00 0.00 34.92 3.67
439 440 7.291885 TCATCTATGAGAATCTTCCAGACCAAT 59.708 37.037 0.00 0.00 34.92 3.16
440 441 7.060383 TCTATGAGAATCTTCCAGACCAATC 57.940 40.000 0.00 0.00 34.92 2.67
441 442 4.128925 TGAGAATCTTCCAGACCAATCG 57.871 45.455 0.00 0.00 34.92 3.34
442 443 2.869192 GAGAATCTTCCAGACCAATCGC 59.131 50.000 0.00 0.00 0.00 4.58
443 444 2.237143 AGAATCTTCCAGACCAATCGCA 59.763 45.455 0.00 0.00 0.00 5.10
444 445 2.322355 ATCTTCCAGACCAATCGCAG 57.678 50.000 0.00 0.00 0.00 5.18
445 446 0.250234 TCTTCCAGACCAATCGCAGG 59.750 55.000 0.00 0.00 0.00 4.85
446 447 1.372087 CTTCCAGACCAATCGCAGGC 61.372 60.000 0.00 0.00 0.00 4.85
447 448 1.841302 TTCCAGACCAATCGCAGGCT 61.841 55.000 0.00 0.00 0.00 4.58
448 449 1.817099 CCAGACCAATCGCAGGCTC 60.817 63.158 0.00 0.00 0.00 4.70
449 450 1.078918 CAGACCAATCGCAGGCTCA 60.079 57.895 0.00 0.00 0.00 4.26
450 451 1.078848 AGACCAATCGCAGGCTCAC 60.079 57.895 0.00 0.00 0.00 3.51
451 452 1.375908 GACCAATCGCAGGCTCACA 60.376 57.895 0.00 0.00 0.00 3.58
452 453 0.955428 GACCAATCGCAGGCTCACAA 60.955 55.000 0.00 0.00 0.00 3.33
453 454 1.237285 ACCAATCGCAGGCTCACAAC 61.237 55.000 0.00 0.00 0.00 3.32
454 455 1.236616 CCAATCGCAGGCTCACAACA 61.237 55.000 0.00 0.00 0.00 3.33
455 456 0.806868 CAATCGCAGGCTCACAACAT 59.193 50.000 0.00 0.00 0.00 2.71
456 457 2.009051 CAATCGCAGGCTCACAACATA 58.991 47.619 0.00 0.00 0.00 2.29
457 458 2.401583 ATCGCAGGCTCACAACATAA 57.598 45.000 0.00 0.00 0.00 1.90
458 459 1.725641 TCGCAGGCTCACAACATAAG 58.274 50.000 0.00 0.00 0.00 1.73
459 460 0.729116 CGCAGGCTCACAACATAAGG 59.271 55.000 0.00 0.00 0.00 2.69
460 461 1.098050 GCAGGCTCACAACATAAGGG 58.902 55.000 0.00 0.00 0.00 3.95
461 462 1.098050 CAGGCTCACAACATAAGGGC 58.902 55.000 0.00 0.00 0.00 5.19
462 463 0.034089 AGGCTCACAACATAAGGGCC 60.034 55.000 0.00 0.00 38.50 5.80
463 464 0.323360 GGCTCACAACATAAGGGCCA 60.323 55.000 6.18 0.00 38.16 5.36
464 465 1.098050 GCTCACAACATAAGGGCCAG 58.902 55.000 6.18 0.00 0.00 4.85
465 466 1.340017 GCTCACAACATAAGGGCCAGA 60.340 52.381 6.18 0.00 0.00 3.86
466 467 2.684927 GCTCACAACATAAGGGCCAGAT 60.685 50.000 6.18 0.00 0.00 2.90
467 468 3.624777 CTCACAACATAAGGGCCAGATT 58.375 45.455 6.18 0.00 0.00 2.40
468 469 3.620488 TCACAACATAAGGGCCAGATTC 58.380 45.455 6.18 0.00 0.00 2.52
469 470 3.010027 TCACAACATAAGGGCCAGATTCA 59.990 43.478 6.18 0.00 0.00 2.57
470 471 3.956199 CACAACATAAGGGCCAGATTCAT 59.044 43.478 6.18 0.00 0.00 2.57
471 472 3.956199 ACAACATAAGGGCCAGATTCATG 59.044 43.478 6.18 1.17 0.00 3.07
472 473 2.590821 ACATAAGGGCCAGATTCATGC 58.409 47.619 6.18 0.00 0.00 4.06
473 474 1.538512 CATAAGGGCCAGATTCATGCG 59.461 52.381 6.18 0.00 0.00 4.73
474 475 0.546122 TAAGGGCCAGATTCATGCGT 59.454 50.000 6.18 0.00 0.00 5.24
475 476 0.323725 AAGGGCCAGATTCATGCGTT 60.324 50.000 6.18 0.00 0.00 4.84
476 477 1.033746 AGGGCCAGATTCATGCGTTG 61.034 55.000 6.18 0.00 0.00 4.10
477 478 1.434696 GGCCAGATTCATGCGTTGG 59.565 57.895 0.00 0.00 0.00 3.77
478 479 1.434696 GCCAGATTCATGCGTTGGG 59.565 57.895 7.25 0.00 0.00 4.12
479 480 1.031571 GCCAGATTCATGCGTTGGGA 61.032 55.000 7.25 0.00 0.00 4.37
480 481 0.734889 CCAGATTCATGCGTTGGGAC 59.265 55.000 0.00 0.00 0.00 4.46
481 482 1.679944 CCAGATTCATGCGTTGGGACT 60.680 52.381 0.00 0.00 0.00 3.85
482 483 1.667724 CAGATTCATGCGTTGGGACTC 59.332 52.381 0.00 0.00 0.00 3.36
483 484 0.652592 GATTCATGCGTTGGGACTCG 59.347 55.000 0.00 0.00 0.00 4.18
484 485 0.744414 ATTCATGCGTTGGGACTCGG 60.744 55.000 0.00 0.00 0.00 4.63
485 486 2.796483 TTCATGCGTTGGGACTCGGG 62.796 60.000 0.00 0.00 0.00 5.14
486 487 3.000819 ATGCGTTGGGACTCGGGA 61.001 61.111 0.00 0.00 0.00 5.14
487 488 3.310860 ATGCGTTGGGACTCGGGAC 62.311 63.158 0.00 0.00 0.00 4.46
488 489 3.998672 GCGTTGGGACTCGGGACA 61.999 66.667 0.00 0.00 0.00 4.02
489 490 2.048503 CGTTGGGACTCGGGACAC 60.049 66.667 0.00 0.00 0.00 3.67
490 491 2.571216 CGTTGGGACTCGGGACACT 61.571 63.158 0.00 0.00 0.00 3.55
491 492 1.246056 CGTTGGGACTCGGGACACTA 61.246 60.000 0.00 0.00 0.00 2.74
492 493 0.531200 GTTGGGACTCGGGACACTAG 59.469 60.000 0.00 0.00 0.00 2.57
493 494 0.406750 TTGGGACTCGGGACACTAGA 59.593 55.000 0.00 0.00 0.00 2.43
494 495 0.406750 TGGGACTCGGGACACTAGAA 59.593 55.000 0.00 0.00 0.00 2.10
495 496 1.006758 TGGGACTCGGGACACTAGAAT 59.993 52.381 0.00 0.00 0.00 2.40
496 497 2.242965 TGGGACTCGGGACACTAGAATA 59.757 50.000 0.00 0.00 0.00 1.75
497 498 2.622470 GGGACTCGGGACACTAGAATAC 59.378 54.545 0.00 0.00 0.00 1.89
498 499 2.622470 GGACTCGGGACACTAGAATACC 59.378 54.545 0.00 0.00 0.00 2.73
499 500 3.553904 GACTCGGGACACTAGAATACCT 58.446 50.000 0.00 0.00 0.00 3.08
500 501 4.445448 GGACTCGGGACACTAGAATACCTA 60.445 50.000 0.00 0.00 0.00 3.08
501 502 5.121380 ACTCGGGACACTAGAATACCTAA 57.879 43.478 0.00 0.00 0.00 2.69
502 503 5.513233 ACTCGGGACACTAGAATACCTAAA 58.487 41.667 0.00 0.00 0.00 1.85
503 504 5.359292 ACTCGGGACACTAGAATACCTAAAC 59.641 44.000 0.00 0.00 0.00 2.01
504 505 4.646492 TCGGGACACTAGAATACCTAAACC 59.354 45.833 0.00 0.00 0.00 3.27
505 506 4.403432 CGGGACACTAGAATACCTAAACCA 59.597 45.833 0.00 0.00 0.00 3.67
506 507 5.668471 GGGACACTAGAATACCTAAACCAC 58.332 45.833 0.00 0.00 0.00 4.16
507 508 5.396101 GGGACACTAGAATACCTAAACCACC 60.396 48.000 0.00 0.00 0.00 4.61
508 509 5.188359 GGACACTAGAATACCTAAACCACCA 59.812 44.000 0.00 0.00 0.00 4.17
509 510 6.126854 GGACACTAGAATACCTAAACCACCAT 60.127 42.308 0.00 0.00 0.00 3.55
510 511 6.650120 ACACTAGAATACCTAAACCACCATG 58.350 40.000 0.00 0.00 0.00 3.66
511 512 6.055588 CACTAGAATACCTAAACCACCATGG 58.944 44.000 11.19 11.19 45.02 3.66
520 521 2.272146 CCACCATGGTCCTTCGGG 59.728 66.667 16.53 8.50 31.35 5.14
521 522 2.297895 CCACCATGGTCCTTCGGGA 61.298 63.158 16.53 0.00 42.74 5.14
522 523 1.682849 CACCATGGTCCTTCGGGAA 59.317 57.895 16.53 0.00 46.97 3.97
523 524 0.392998 CACCATGGTCCTTCGGGAAG 60.393 60.000 16.53 1.38 46.97 3.46
524 525 1.452108 CCATGGTCCTTCGGGAAGC 60.452 63.158 2.57 0.00 46.97 3.86
525 526 1.299648 CATGGTCCTTCGGGAAGCA 59.700 57.895 2.86 0.00 46.97 3.91
526 527 0.745845 CATGGTCCTTCGGGAAGCAG 60.746 60.000 2.86 0.00 46.97 4.24
527 528 0.909610 ATGGTCCTTCGGGAAGCAGA 60.910 55.000 2.86 0.00 46.97 4.26
528 529 0.909610 TGGTCCTTCGGGAAGCAGAT 60.910 55.000 2.86 0.00 46.97 2.90
529 530 1.120530 GGTCCTTCGGGAAGCAGATA 58.879 55.000 2.86 0.00 46.97 1.98
530 531 1.694696 GGTCCTTCGGGAAGCAGATAT 59.305 52.381 2.86 0.00 46.97 1.63
531 532 2.104963 GGTCCTTCGGGAAGCAGATATT 59.895 50.000 2.86 0.00 46.97 1.28
532 533 3.134458 GTCCTTCGGGAAGCAGATATTG 58.866 50.000 2.86 0.00 46.97 1.90
533 534 3.038280 TCCTTCGGGAAGCAGATATTGA 58.962 45.455 2.86 0.00 41.89 2.57
534 535 3.134458 CCTTCGGGAAGCAGATATTGAC 58.866 50.000 2.86 0.00 37.11 3.18
535 536 2.910688 TCGGGAAGCAGATATTGACC 57.089 50.000 0.00 0.00 0.00 4.02
536 537 1.416401 TCGGGAAGCAGATATTGACCC 59.584 52.381 0.00 0.00 34.82 4.46
537 538 1.140852 CGGGAAGCAGATATTGACCCA 59.859 52.381 0.00 0.00 36.58 4.51
538 539 2.224621 CGGGAAGCAGATATTGACCCAT 60.225 50.000 0.00 0.00 36.58 4.00
539 540 3.748668 CGGGAAGCAGATATTGACCCATT 60.749 47.826 0.00 0.00 36.58 3.16
540 541 4.218312 GGGAAGCAGATATTGACCCATTT 58.782 43.478 0.00 0.00 36.70 2.32
541 542 4.279420 GGGAAGCAGATATTGACCCATTTC 59.721 45.833 0.00 0.00 36.70 2.17
542 543 4.889409 GGAAGCAGATATTGACCCATTTCA 59.111 41.667 0.00 0.00 0.00 2.69
543 544 5.221126 GGAAGCAGATATTGACCCATTTCAC 60.221 44.000 0.00 0.00 0.00 3.18
544 545 4.210331 AGCAGATATTGACCCATTTCACC 58.790 43.478 0.00 0.00 0.00 4.02
545 546 3.953612 GCAGATATTGACCCATTTCACCA 59.046 43.478 0.00 0.00 0.00 4.17
546 547 4.586001 GCAGATATTGACCCATTTCACCAT 59.414 41.667 0.00 0.00 0.00 3.55
561 562 1.045911 ACCATGGGCGTGTTTGGTTT 61.046 50.000 18.09 0.00 39.41 3.27
564 565 0.469144 ATGGGCGTGTTTGGTTTCCT 60.469 50.000 0.00 0.00 0.00 3.36
568 569 0.031994 GCGTGTTTGGTTTCCTGCAT 59.968 50.000 0.00 0.00 0.00 3.96
606 607 2.904131 CGGGAAGGAAGAGGCCTC 59.096 66.667 26.22 26.22 37.26 4.70
615 616 3.753787 AAGAGGCCTCTTTGGTTGG 57.246 52.632 37.44 0.00 46.95 3.77
641 642 1.367346 TTCCTGTTGGGCCTACATCA 58.633 50.000 20.85 8.03 34.39 3.07
865 901 2.485122 GGCGGTTGCGATTTCAGG 59.515 61.111 0.00 0.00 44.10 3.86
869 905 2.004583 CGGTTGCGATTTCAGGTCTA 57.995 50.000 0.00 0.00 0.00 2.59
935 995 0.846693 GGATATGGTGCTCCCCTTGT 59.153 55.000 1.59 0.00 0.00 3.16
970 1030 1.136984 GTCGACCTAGTCTGTGCCG 59.863 63.158 3.51 0.00 0.00 5.69
1023 1084 0.036306 CGGTAAGCAACAACCCCTCT 59.964 55.000 0.00 0.00 31.68 3.69
1125 1186 1.107945 TTATGGACGCACGGATGAGA 58.892 50.000 0.00 0.00 0.00 3.27
1199 1260 2.568509 TCATGCACCAGAGAGATGTTCA 59.431 45.455 0.00 0.00 0.00 3.18
1241 1302 2.238646 TCCGCTATGGTCCATTGTTTCT 59.761 45.455 10.33 0.00 39.52 2.52
1451 1512 1.922447 TGGCCATAACCAGAGGTTCAT 59.078 47.619 0.00 0.00 43.05 2.57
1482 1543 6.693466 TCACAACACGTTTAGGAGATCAATA 58.307 36.000 0.00 0.00 0.00 1.90
1525 1586 1.655484 GCAGGTGCTTTTTGCTGTTT 58.345 45.000 0.00 0.00 43.37 2.83
1562 1623 3.896888 GAGATGATCAGGAGACCATCTGT 59.103 47.826 7.06 0.00 43.88 3.41
1673 1736 7.557358 TGATATGCCTGTATTGTTCAAGTTCAT 59.443 33.333 0.00 0.00 0.00 2.57
1735 1798 4.498493 TGGGGCAATAGATGGTACTCATA 58.502 43.478 0.00 0.00 35.97 2.15
1797 1860 1.623811 GGGAGGAAGCACTACACAAGA 59.376 52.381 0.00 0.00 0.00 3.02
1832 1895 5.798132 TGCTACTGTTGACTTTGATCTGAT 58.202 37.500 0.00 0.00 0.00 2.90
1866 1930 3.650950 GCTGGCTGGGAGGGTCAA 61.651 66.667 0.00 0.00 0.00 3.18
1980 2044 0.544697 ATGTCGGCCGGGTATTCTTT 59.455 50.000 27.83 0.00 0.00 2.52
1996 2060 6.437477 GGTATTCTTTCACCCTTCAGGAAAAT 59.563 38.462 0.00 0.00 39.89 1.82
2074 2138 6.591935 AGTTGTTTAATCTCAGACACTCCAA 58.408 36.000 0.00 0.00 0.00 3.53
2141 2205 6.642733 AGGTTTAAGATCCTGGATCAGAAA 57.357 37.500 32.30 26.69 41.12 2.52
2240 2304 1.960417 TTGATGAACACGTGCCTGAA 58.040 45.000 17.22 0.00 0.00 3.02
2301 2365 0.888736 TGGTGTGGAGGCATTTGACG 60.889 55.000 0.00 0.00 0.00 4.35
2307 2371 1.003003 TGGAGGCATTTGACGATGACA 59.997 47.619 0.00 0.00 37.52 3.58
2335 2399 2.243736 AGAACAAAAGGTTGGAGTGGGA 59.756 45.455 0.00 0.00 40.63 4.37
2414 2481 1.913451 GCAGCAGCAGAAGCACAGAG 61.913 60.000 0.00 0.00 45.49 3.35
2434 2519 3.247162 AGGAAGAGGAAGAAGAAGCAGT 58.753 45.455 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.895131 GGAAGGCTTTGCTTCCATTGA 59.105 47.619 12.94 0.00 46.12 2.57
1 2 2.375173 GGAAGGCTTTGCTTCCATTG 57.625 50.000 12.94 0.00 46.12 2.82
5 6 1.039856 TTGTGGAAGGCTTTGCTTCC 58.960 50.000 11.39 11.39 46.80 3.46
6 7 2.473816 GTTTGTGGAAGGCTTTGCTTC 58.526 47.619 0.00 0.00 0.00 3.86
7 8 1.202405 CGTTTGTGGAAGGCTTTGCTT 60.202 47.619 0.00 0.00 0.00 3.91
8 9 0.385390 CGTTTGTGGAAGGCTTTGCT 59.615 50.000 0.00 0.00 0.00 3.91
9 10 0.383949 TCGTTTGTGGAAGGCTTTGC 59.616 50.000 0.00 0.00 0.00 3.68
10 11 1.676006 ACTCGTTTGTGGAAGGCTTTG 59.324 47.619 0.00 0.00 0.00 2.77
11 12 2.052782 ACTCGTTTGTGGAAGGCTTT 57.947 45.000 0.00 0.00 0.00 3.51
12 13 1.676006 CAACTCGTTTGTGGAAGGCTT 59.324 47.619 0.00 0.00 0.00 4.35
13 14 1.308998 CAACTCGTTTGTGGAAGGCT 58.691 50.000 0.00 0.00 0.00 4.58
14 15 3.845625 CAACTCGTTTGTGGAAGGC 57.154 52.632 0.00 0.00 0.00 4.35
22 23 3.303990 CCTTGTCATGGACAACTCGTTTG 60.304 47.826 7.66 0.00 45.88 2.93
23 24 2.878406 CCTTGTCATGGACAACTCGTTT 59.122 45.455 7.66 0.00 45.88 3.60
24 25 2.494059 CCTTGTCATGGACAACTCGTT 58.506 47.619 7.66 0.00 45.88 3.85
25 26 1.878102 GCCTTGTCATGGACAACTCGT 60.878 52.381 8.93 0.00 45.88 4.18
26 27 0.798776 GCCTTGTCATGGACAACTCG 59.201 55.000 8.93 0.00 45.88 4.18
27 28 1.808945 CAGCCTTGTCATGGACAACTC 59.191 52.381 8.93 3.44 45.88 3.01
28 29 1.421268 TCAGCCTTGTCATGGACAACT 59.579 47.619 8.93 2.65 45.88 3.16
29 30 1.537202 GTCAGCCTTGTCATGGACAAC 59.463 52.381 8.93 0.45 45.88 3.32
31 32 1.002430 GAGTCAGCCTTGTCATGGACA 59.998 52.381 8.93 0.00 41.09 4.02
32 33 1.677217 GGAGTCAGCCTTGTCATGGAC 60.677 57.143 8.93 0.00 0.00 4.02
33 34 0.615331 GGAGTCAGCCTTGTCATGGA 59.385 55.000 8.93 0.00 0.00 3.41
34 35 0.617413 AGGAGTCAGCCTTGTCATGG 59.383 55.000 0.22 0.22 33.46 3.66
35 36 1.277273 TCAGGAGTCAGCCTTGTCATG 59.723 52.381 0.00 0.00 35.66 3.07
36 37 1.277557 GTCAGGAGTCAGCCTTGTCAT 59.722 52.381 0.00 0.00 35.66 3.06
37 38 0.681733 GTCAGGAGTCAGCCTTGTCA 59.318 55.000 0.00 0.00 35.66 3.58
38 39 0.681733 TGTCAGGAGTCAGCCTTGTC 59.318 55.000 0.00 0.00 35.66 3.18
39 40 1.356124 ATGTCAGGAGTCAGCCTTGT 58.644 50.000 0.00 0.00 35.66 3.16
40 41 3.176552 CTATGTCAGGAGTCAGCCTTG 57.823 52.381 0.00 0.00 35.66 3.61
80 81 1.516386 CACGTCCGGGATCTTCACG 60.516 63.158 0.00 4.58 44.16 4.35
81 82 1.153628 CCACGTCCGGGATCTTCAC 60.154 63.158 0.00 0.00 0.00 3.18
82 83 1.189524 AACCACGTCCGGGATCTTCA 61.190 55.000 0.00 0.00 0.00 3.02
83 84 0.819582 TAACCACGTCCGGGATCTTC 59.180 55.000 0.00 0.00 0.00 2.87
84 85 0.822164 CTAACCACGTCCGGGATCTT 59.178 55.000 0.00 0.00 0.00 2.40
85 86 1.673808 GCTAACCACGTCCGGGATCT 61.674 60.000 0.00 0.00 0.00 2.75
86 87 1.227176 GCTAACCACGTCCGGGATC 60.227 63.158 0.00 0.00 0.00 3.36
87 88 1.684734 AGCTAACCACGTCCGGGAT 60.685 57.895 0.00 0.00 0.00 3.85
88 89 2.283388 AGCTAACCACGTCCGGGA 60.283 61.111 0.00 0.00 0.00 5.14
89 90 2.125673 CAGCTAACCACGTCCGGG 60.126 66.667 0.00 0.00 0.00 5.73
90 91 2.813908 GCAGCTAACCACGTCCGG 60.814 66.667 0.00 0.00 0.00 5.14
91 92 3.179265 CGCAGCTAACCACGTCCG 61.179 66.667 0.00 0.00 0.00 4.79
92 93 1.352156 CTTCGCAGCTAACCACGTCC 61.352 60.000 0.00 0.00 0.00 4.79
93 94 0.388134 TCTTCGCAGCTAACCACGTC 60.388 55.000 0.00 0.00 0.00 4.34
94 95 0.032952 TTCTTCGCAGCTAACCACGT 59.967 50.000 0.00 0.00 0.00 4.49
95 96 1.136336 GTTTCTTCGCAGCTAACCACG 60.136 52.381 0.00 0.00 0.00 4.94
96 97 1.871039 TGTTTCTTCGCAGCTAACCAC 59.129 47.619 0.00 0.00 0.00 4.16
97 98 2.248280 TGTTTCTTCGCAGCTAACCA 57.752 45.000 0.00 0.00 0.00 3.67
98 99 2.289547 TGTTGTTTCTTCGCAGCTAACC 59.710 45.455 0.00 0.00 0.00 2.85
99 100 3.602390 TGTTGTTTCTTCGCAGCTAAC 57.398 42.857 0.00 0.00 0.00 2.34
100 101 3.188460 GGATGTTGTTTCTTCGCAGCTAA 59.812 43.478 0.00 0.00 0.00 3.09
101 102 2.742053 GGATGTTGTTTCTTCGCAGCTA 59.258 45.455 0.00 0.00 0.00 3.32
102 103 1.537202 GGATGTTGTTTCTTCGCAGCT 59.463 47.619 0.00 0.00 0.00 4.24
103 104 1.266718 TGGATGTTGTTTCTTCGCAGC 59.733 47.619 0.00 0.00 0.00 5.25
104 105 3.837213 ATGGATGTTGTTTCTTCGCAG 57.163 42.857 0.00 0.00 0.00 5.18
105 106 6.112734 ACTATATGGATGTTGTTTCTTCGCA 58.887 36.000 0.00 0.00 0.00 5.10
106 107 6.562270 CGACTATATGGATGTTGTTTCTTCGC 60.562 42.308 0.00 0.00 0.00 4.70
107 108 6.475727 ACGACTATATGGATGTTGTTTCTTCG 59.524 38.462 0.00 0.00 0.00 3.79
108 109 7.042658 GGACGACTATATGGATGTTGTTTCTTC 60.043 40.741 0.00 0.00 0.00 2.87
109 110 6.761714 GGACGACTATATGGATGTTGTTTCTT 59.238 38.462 0.00 0.00 0.00 2.52
110 111 6.281405 GGACGACTATATGGATGTTGTTTCT 58.719 40.000 0.00 0.00 0.00 2.52
111 112 5.175126 CGGACGACTATATGGATGTTGTTTC 59.825 44.000 0.00 0.00 0.00 2.78
112 113 5.047847 CGGACGACTATATGGATGTTGTTT 58.952 41.667 0.00 0.00 0.00 2.83
113 114 4.500887 CCGGACGACTATATGGATGTTGTT 60.501 45.833 0.00 0.00 0.00 2.83
114 115 3.005472 CCGGACGACTATATGGATGTTGT 59.995 47.826 0.00 0.00 0.00 3.32
115 116 3.575630 CCGGACGACTATATGGATGTTG 58.424 50.000 0.00 0.00 0.00 3.33
116 117 2.029290 GCCGGACGACTATATGGATGTT 60.029 50.000 5.05 0.00 0.00 2.71
117 118 1.544691 GCCGGACGACTATATGGATGT 59.455 52.381 5.05 0.00 0.00 3.06
118 119 1.544246 TGCCGGACGACTATATGGATG 59.456 52.381 5.05 0.00 0.00 3.51
119 120 1.919240 TGCCGGACGACTATATGGAT 58.081 50.000 5.05 0.00 0.00 3.41
120 121 1.816835 GATGCCGGACGACTATATGGA 59.183 52.381 5.05 0.00 0.00 3.41
121 122 1.467543 CGATGCCGGACGACTATATGG 60.468 57.143 5.05 0.00 0.00 2.74
122 123 1.896345 CGATGCCGGACGACTATATG 58.104 55.000 5.05 0.00 0.00 1.78
123 124 0.170561 GCGATGCCGGACGACTATAT 59.829 55.000 5.05 0.00 36.06 0.86
124 125 1.167781 TGCGATGCCGGACGACTATA 61.168 55.000 5.05 0.00 36.06 1.31
125 126 2.011741 TTGCGATGCCGGACGACTAT 62.012 55.000 5.05 0.00 35.37 2.12
126 127 2.607668 CTTGCGATGCCGGACGACTA 62.608 60.000 5.05 0.83 35.37 2.59
127 128 3.989698 CTTGCGATGCCGGACGACT 62.990 63.158 5.05 0.00 35.37 4.18
128 129 3.554692 CTTGCGATGCCGGACGAC 61.555 66.667 5.05 4.78 35.37 4.34
129 130 4.812476 CCTTGCGATGCCGGACGA 62.812 66.667 5.05 0.00 35.37 4.20
130 131 4.812476 TCCTTGCGATGCCGGACG 62.812 66.667 5.05 8.87 35.37 4.79
131 132 2.892425 CTCCTTGCGATGCCGGAC 60.892 66.667 5.05 0.00 35.37 4.79
132 133 4.161295 CCTCCTTGCGATGCCGGA 62.161 66.667 5.05 0.00 36.06 5.14
142 143 2.826777 ATTGAGTGCGGCCCTCCTTG 62.827 60.000 9.98 0.00 0.00 3.61
143 144 2.142292 AATTGAGTGCGGCCCTCCTT 62.142 55.000 9.98 1.30 0.00 3.36
144 145 2.543067 GAATTGAGTGCGGCCCTCCT 62.543 60.000 9.98 0.00 0.00 3.69
145 146 2.044946 AATTGAGTGCGGCCCTCC 60.045 61.111 9.98 0.00 0.00 4.30
146 147 2.464459 CGAATTGAGTGCGGCCCTC 61.464 63.158 5.46 5.46 0.00 4.30
147 148 2.436646 CGAATTGAGTGCGGCCCT 60.437 61.111 0.00 0.00 0.00 5.19
148 149 3.508840 CCGAATTGAGTGCGGCCC 61.509 66.667 0.00 0.00 38.46 5.80
152 153 0.179250 CGTGAACCGAATTGAGTGCG 60.179 55.000 0.00 0.00 39.56 5.34
153 154 0.865769 ACGTGAACCGAATTGAGTGC 59.134 50.000 0.00 0.00 40.70 4.40
154 155 2.404215 AGACGTGAACCGAATTGAGTG 58.596 47.619 0.00 0.00 40.70 3.51
155 156 2.609737 GGAGACGTGAACCGAATTGAGT 60.610 50.000 0.00 0.00 40.70 3.41
156 157 1.993370 GGAGACGTGAACCGAATTGAG 59.007 52.381 0.00 0.00 40.70 3.02
157 158 2.074547 GGAGACGTGAACCGAATTGA 57.925 50.000 0.00 0.00 40.70 2.57
171 172 2.969238 CCATGCGATGCCGGAGAC 60.969 66.667 5.05 0.00 40.07 3.36
172 173 4.240103 CCCATGCGATGCCGGAGA 62.240 66.667 5.05 0.00 40.07 3.71
176 177 4.552365 AGACCCCATGCGATGCCG 62.552 66.667 0.00 0.00 39.16 5.69
177 178 2.903855 CAGACCCCATGCGATGCC 60.904 66.667 0.00 0.00 0.00 4.40
178 179 1.890979 CTCAGACCCCATGCGATGC 60.891 63.158 0.00 0.00 0.00 3.91
179 180 1.890979 GCTCAGACCCCATGCGATG 60.891 63.158 0.00 0.00 0.00 3.84
180 181 2.321263 CTGCTCAGACCCCATGCGAT 62.321 60.000 0.00 0.00 0.00 4.58
181 182 3.002583 TGCTCAGACCCCATGCGA 61.003 61.111 0.00 0.00 0.00 5.10
182 183 2.321263 ATCTGCTCAGACCCCATGCG 62.321 60.000 1.15 0.00 40.75 4.73
183 184 0.106819 AATCTGCTCAGACCCCATGC 60.107 55.000 1.15 0.00 40.75 4.06
184 185 1.676746 CAATCTGCTCAGACCCCATG 58.323 55.000 1.15 0.00 40.75 3.66
185 186 0.106819 GCAATCTGCTCAGACCCCAT 60.107 55.000 1.15 0.00 40.96 4.00
186 187 1.300963 GCAATCTGCTCAGACCCCA 59.699 57.895 1.15 0.00 40.96 4.96
187 188 0.322816 TTGCAATCTGCTCAGACCCC 60.323 55.000 1.15 0.00 45.31 4.95
188 189 1.200948 GTTTGCAATCTGCTCAGACCC 59.799 52.381 0.00 0.00 45.31 4.46
189 190 1.881973 TGTTTGCAATCTGCTCAGACC 59.118 47.619 0.00 0.00 45.31 3.85
190 191 3.499048 CATGTTTGCAATCTGCTCAGAC 58.501 45.455 0.00 0.00 45.31 3.51
191 192 3.842732 CATGTTTGCAATCTGCTCAGA 57.157 42.857 0.00 1.67 45.31 3.27
204 205 6.400727 GCTTTGCAAATTCTCTAGCATGTTTG 60.401 38.462 13.23 0.00 36.80 2.93
205 206 5.636543 GCTTTGCAAATTCTCTAGCATGTTT 59.363 36.000 13.23 0.00 36.80 2.83
206 207 5.047519 AGCTTTGCAAATTCTCTAGCATGTT 60.048 36.000 13.23 0.00 36.80 2.71
207 208 4.461781 AGCTTTGCAAATTCTCTAGCATGT 59.538 37.500 13.23 0.00 36.80 3.21
208 209 4.798907 CAGCTTTGCAAATTCTCTAGCATG 59.201 41.667 13.23 7.11 36.80 4.06
209 210 4.142227 CCAGCTTTGCAAATTCTCTAGCAT 60.142 41.667 13.23 0.00 36.80 3.79
210 211 3.192001 CCAGCTTTGCAAATTCTCTAGCA 59.808 43.478 13.23 0.00 34.79 3.49
211 212 3.441572 TCCAGCTTTGCAAATTCTCTAGC 59.558 43.478 13.23 10.61 0.00 3.42
212 213 4.142513 GGTCCAGCTTTGCAAATTCTCTAG 60.143 45.833 13.23 0.00 0.00 2.43
213 214 3.758554 GGTCCAGCTTTGCAAATTCTCTA 59.241 43.478 13.23 1.13 0.00 2.43
214 215 2.560105 GGTCCAGCTTTGCAAATTCTCT 59.440 45.455 13.23 5.08 0.00 3.10
215 216 2.353109 GGGTCCAGCTTTGCAAATTCTC 60.353 50.000 13.23 2.79 0.00 2.87
216 217 1.620323 GGGTCCAGCTTTGCAAATTCT 59.380 47.619 13.23 10.08 0.00 2.40
217 218 1.620323 AGGGTCCAGCTTTGCAAATTC 59.380 47.619 13.23 7.85 0.00 2.17
218 219 1.720781 AGGGTCCAGCTTTGCAAATT 58.279 45.000 13.23 1.16 0.00 1.82
219 220 1.720781 AAGGGTCCAGCTTTGCAAAT 58.279 45.000 13.23 0.00 0.00 2.32
220 221 1.412343 GAAAGGGTCCAGCTTTGCAAA 59.588 47.619 12.14 12.14 0.00 3.68
221 222 1.039856 GAAAGGGTCCAGCTTTGCAA 58.960 50.000 0.00 0.00 0.00 4.08
222 223 0.106268 TGAAAGGGTCCAGCTTTGCA 60.106 50.000 0.00 0.00 0.00 4.08
223 224 1.000171 CTTGAAAGGGTCCAGCTTTGC 60.000 52.381 0.00 0.00 0.00 3.68
224 225 1.000171 GCTTGAAAGGGTCCAGCTTTG 60.000 52.381 0.00 0.00 40.96 2.77
225 226 1.332195 GCTTGAAAGGGTCCAGCTTT 58.668 50.000 0.00 0.00 40.96 3.51
226 227 0.540597 GGCTTGAAAGGGTCCAGCTT 60.541 55.000 0.00 0.00 43.17 3.74
227 228 1.075659 GGCTTGAAAGGGTCCAGCT 59.924 57.895 0.00 0.00 43.17 4.24
228 229 0.613012 ATGGCTTGAAAGGGTCCAGC 60.613 55.000 0.00 0.00 42.95 4.85
229 230 1.180029 CATGGCTTGAAAGGGTCCAG 58.820 55.000 0.00 0.00 0.00 3.86
230 231 0.251742 CCATGGCTTGAAAGGGTCCA 60.252 55.000 0.00 0.00 0.00 4.02
231 232 0.039618 TCCATGGCTTGAAAGGGTCC 59.960 55.000 6.96 0.00 0.00 4.46
232 233 2.027385 GATCCATGGCTTGAAAGGGTC 58.973 52.381 6.96 0.00 0.00 4.46
233 234 1.342374 GGATCCATGGCTTGAAAGGGT 60.342 52.381 6.96 0.00 0.00 4.34
234 235 1.342275 TGGATCCATGGCTTGAAAGGG 60.342 52.381 11.44 0.00 0.00 3.95
235 236 2.148446 TGGATCCATGGCTTGAAAGG 57.852 50.000 11.44 0.00 0.00 3.11
236 237 2.167075 GGTTGGATCCATGGCTTGAAAG 59.833 50.000 17.06 0.00 0.00 2.62
237 238 2.178580 GGTTGGATCCATGGCTTGAAA 58.821 47.619 17.06 0.00 0.00 2.69
238 239 1.076841 TGGTTGGATCCATGGCTTGAA 59.923 47.619 17.06 0.00 31.96 2.69
239 240 0.703488 TGGTTGGATCCATGGCTTGA 59.297 50.000 17.06 0.00 31.96 3.02
240 241 1.108776 CTGGTTGGATCCATGGCTTG 58.891 55.000 17.06 0.48 36.84 4.01
241 242 1.002069 TCTGGTTGGATCCATGGCTT 58.998 50.000 17.06 0.00 36.84 4.35
242 243 1.002069 TTCTGGTTGGATCCATGGCT 58.998 50.000 17.06 0.00 36.84 4.75
243 244 1.851304 TTTCTGGTTGGATCCATGGC 58.149 50.000 17.06 9.02 36.84 4.40
244 245 2.762327 CCTTTTCTGGTTGGATCCATGG 59.238 50.000 17.06 4.97 36.84 3.66
245 246 2.762327 CCCTTTTCTGGTTGGATCCATG 59.238 50.000 17.06 6.74 36.84 3.66
246 247 2.654385 TCCCTTTTCTGGTTGGATCCAT 59.346 45.455 17.06 0.00 36.84 3.41
247 248 2.069775 TCCCTTTTCTGGTTGGATCCA 58.930 47.619 11.44 11.44 36.00 3.41
248 249 2.447443 GTCCCTTTTCTGGTTGGATCC 58.553 52.381 4.20 4.20 0.00 3.36
249 250 2.447443 GGTCCCTTTTCTGGTTGGATC 58.553 52.381 0.00 0.00 0.00 3.36
250 251 1.077169 GGGTCCCTTTTCTGGTTGGAT 59.923 52.381 0.00 0.00 0.00 3.41
251 252 0.481128 GGGTCCCTTTTCTGGTTGGA 59.519 55.000 0.00 0.00 0.00 3.53
252 253 0.482887 AGGGTCCCTTTTCTGGTTGG 59.517 55.000 3.85 0.00 0.00 3.77
253 254 2.158460 AGAAGGGTCCCTTTTCTGGTTG 60.158 50.000 24.58 0.00 44.82 3.77
254 255 2.144450 AGAAGGGTCCCTTTTCTGGTT 58.856 47.619 24.58 0.00 44.82 3.67
255 256 1.834540 AGAAGGGTCCCTTTTCTGGT 58.165 50.000 24.58 0.00 44.82 4.00
256 257 2.108250 TGAAGAAGGGTCCCTTTTCTGG 59.892 50.000 27.81 0.00 44.82 3.86
257 258 3.508845 TGAAGAAGGGTCCCTTTTCTG 57.491 47.619 27.81 0.00 44.82 3.02
258 259 4.509302 GGAATGAAGAAGGGTCCCTTTTCT 60.509 45.833 27.81 20.10 44.82 2.52
259 260 3.764434 GGAATGAAGAAGGGTCCCTTTTC 59.236 47.826 24.58 24.56 44.82 2.29
260 261 3.502303 GGGAATGAAGAAGGGTCCCTTTT 60.502 47.826 24.58 16.43 44.82 2.27
261 262 2.043115 GGGAATGAAGAAGGGTCCCTTT 59.957 50.000 24.58 9.74 44.82 3.11
263 264 1.299939 GGGAATGAAGAAGGGTCCCT 58.700 55.000 3.85 3.85 44.01 4.20
264 265 3.905331 GGGAATGAAGAAGGGTCCC 57.095 57.895 0.00 0.00 41.23 4.46
265 266 1.636003 ACAGGGAATGAAGAAGGGTCC 59.364 52.381 0.00 0.00 0.00 4.46
266 267 2.305927 TCACAGGGAATGAAGAAGGGTC 59.694 50.000 0.00 0.00 0.00 4.46
267 268 2.348472 TCACAGGGAATGAAGAAGGGT 58.652 47.619 0.00 0.00 0.00 4.34
268 269 3.439857 TTCACAGGGAATGAAGAAGGG 57.560 47.619 0.00 0.00 32.34 3.95
274 275 2.978978 TGGTCTCTTCACAGGGAATGAA 59.021 45.455 0.00 0.00 34.32 2.57
275 276 2.303022 GTGGTCTCTTCACAGGGAATGA 59.697 50.000 0.00 0.00 34.32 2.57
276 277 2.304180 AGTGGTCTCTTCACAGGGAATG 59.696 50.000 0.00 0.00 37.58 2.67
277 278 2.569404 GAGTGGTCTCTTCACAGGGAAT 59.431 50.000 0.00 0.00 37.58 3.01
278 279 1.971357 GAGTGGTCTCTTCACAGGGAA 59.029 52.381 0.00 0.00 37.58 3.97
279 280 1.633774 GAGTGGTCTCTTCACAGGGA 58.366 55.000 0.00 0.00 37.58 4.20
280 281 0.610687 GGAGTGGTCTCTTCACAGGG 59.389 60.000 0.00 0.00 40.29 4.45
281 282 0.610687 GGGAGTGGTCTCTTCACAGG 59.389 60.000 0.00 0.00 40.29 4.00
282 283 1.342074 TGGGAGTGGTCTCTTCACAG 58.658 55.000 0.00 0.00 40.29 3.66
283 284 1.694150 CTTGGGAGTGGTCTCTTCACA 59.306 52.381 0.00 0.00 40.29 3.58
284 285 1.609320 GCTTGGGAGTGGTCTCTTCAC 60.609 57.143 0.00 0.00 40.29 3.18
285 286 0.687354 GCTTGGGAGTGGTCTCTTCA 59.313 55.000 0.00 0.00 40.29 3.02
286 287 0.035915 GGCTTGGGAGTGGTCTCTTC 60.036 60.000 0.00 0.00 40.29 2.87
287 288 1.831652 CGGCTTGGGAGTGGTCTCTT 61.832 60.000 0.00 0.00 40.29 2.85
288 289 2.286523 CGGCTTGGGAGTGGTCTCT 61.287 63.158 0.00 0.00 40.29 3.10
289 290 2.266055 CGGCTTGGGAGTGGTCTC 59.734 66.667 0.00 0.00 39.76 3.36
290 291 3.322466 CCGGCTTGGGAGTGGTCT 61.322 66.667 0.00 0.00 0.00 3.85
291 292 3.316573 CTCCGGCTTGGGAGTGGTC 62.317 68.421 0.00 0.00 46.97 4.02
292 293 3.322466 CTCCGGCTTGGGAGTGGT 61.322 66.667 0.00 0.00 46.97 4.16
297 298 0.541863 GAAATCTCTCCGGCTTGGGA 59.458 55.000 0.00 0.00 38.76 4.37
298 299 0.464554 GGAAATCTCTCCGGCTTGGG 60.465 60.000 0.00 0.00 38.76 4.12
299 300 0.253044 TGGAAATCTCTCCGGCTTGG 59.747 55.000 0.00 0.00 38.44 3.61
300 301 1.208052 TCTGGAAATCTCTCCGGCTTG 59.792 52.381 0.00 0.00 41.12 4.01
301 302 1.573108 TCTGGAAATCTCTCCGGCTT 58.427 50.000 0.00 0.00 41.12 4.35
302 303 1.573108 TTCTGGAAATCTCTCCGGCT 58.427 50.000 0.00 0.00 41.12 5.52
303 304 2.158900 TGATTCTGGAAATCTCTCCGGC 60.159 50.000 0.00 0.00 41.12 6.13
304 305 3.386078 TCTGATTCTGGAAATCTCTCCGG 59.614 47.826 0.00 0.00 42.51 5.14
305 306 4.662468 TCTGATTCTGGAAATCTCTCCG 57.338 45.455 0.08 0.00 38.44 4.63
306 307 6.225318 CAGATCTGATTCTGGAAATCTCTCC 58.775 44.000 18.34 0.00 39.58 3.71
317 318 1.873069 GCGCTCCCAGATCTGATTCTG 60.873 57.143 24.62 11.42 42.31 3.02
318 319 0.392336 GCGCTCCCAGATCTGATTCT 59.608 55.000 24.62 0.00 0.00 2.40
319 320 0.392336 AGCGCTCCCAGATCTGATTC 59.608 55.000 24.62 8.89 0.00 2.52
320 321 0.392336 GAGCGCTCCCAGATCTGATT 59.608 55.000 27.22 1.17 0.00 2.57
321 322 1.470996 GGAGCGCTCCCAGATCTGAT 61.471 60.000 40.99 0.00 43.94 2.90
322 323 2.130426 GGAGCGCTCCCAGATCTGA 61.130 63.158 40.99 3.99 43.94 3.27
323 324 2.420890 GGAGCGCTCCCAGATCTG 59.579 66.667 40.99 16.24 43.94 2.90
332 333 0.100682 TGTGATCGTAAGGAGCGCTC 59.899 55.000 29.38 29.38 41.97 5.03
333 334 0.101399 CTGTGATCGTAAGGAGCGCT 59.899 55.000 11.27 11.27 41.97 5.92
334 335 0.100682 TCTGTGATCGTAAGGAGCGC 59.899 55.000 0.00 0.00 41.82 5.92
335 336 1.402259 AGTCTGTGATCGTAAGGAGCG 59.598 52.381 0.00 0.00 32.36 5.03
336 337 3.003897 CCTAGTCTGTGATCGTAAGGAGC 59.996 52.174 0.00 0.00 38.47 4.70
337 338 4.452825 TCCTAGTCTGTGATCGTAAGGAG 58.547 47.826 0.00 0.00 38.47 3.69
338 339 4.452825 CTCCTAGTCTGTGATCGTAAGGA 58.547 47.826 0.00 0.00 38.47 3.36
339 340 3.566322 CCTCCTAGTCTGTGATCGTAAGG 59.434 52.174 0.00 0.00 38.47 2.69
340 341 4.452825 TCCTCCTAGTCTGTGATCGTAAG 58.547 47.826 0.00 0.00 0.00 2.34
341 342 4.163649 TCTCCTCCTAGTCTGTGATCGTAA 59.836 45.833 0.00 0.00 0.00 3.18
342 343 3.710165 TCTCCTCCTAGTCTGTGATCGTA 59.290 47.826 0.00 0.00 0.00 3.43
343 344 2.506231 TCTCCTCCTAGTCTGTGATCGT 59.494 50.000 0.00 0.00 0.00 3.73
344 345 2.875933 GTCTCCTCCTAGTCTGTGATCG 59.124 54.545 0.00 0.00 0.00 3.69
345 346 2.875933 CGTCTCCTCCTAGTCTGTGATC 59.124 54.545 0.00 0.00 0.00 2.92
346 347 2.506231 TCGTCTCCTCCTAGTCTGTGAT 59.494 50.000 0.00 0.00 0.00 3.06
347 348 1.907255 TCGTCTCCTCCTAGTCTGTGA 59.093 52.381 0.00 0.00 0.00 3.58
348 349 2.011222 GTCGTCTCCTCCTAGTCTGTG 58.989 57.143 0.00 0.00 0.00 3.66
349 350 1.065272 GGTCGTCTCCTCCTAGTCTGT 60.065 57.143 0.00 0.00 0.00 3.41
350 351 1.065345 TGGTCGTCTCCTCCTAGTCTG 60.065 57.143 0.00 0.00 0.00 3.51
351 352 1.287217 TGGTCGTCTCCTCCTAGTCT 58.713 55.000 0.00 0.00 0.00 3.24
352 353 1.950909 CATGGTCGTCTCCTCCTAGTC 59.049 57.143 0.00 0.00 0.00 2.59
353 354 2.024825 GCATGGTCGTCTCCTCCTAGT 61.025 57.143 0.00 0.00 0.00 2.57
354 355 0.671251 GCATGGTCGTCTCCTCCTAG 59.329 60.000 0.00 0.00 0.00 3.02
355 356 0.033503 TGCATGGTCGTCTCCTCCTA 60.034 55.000 0.00 0.00 0.00 2.94
356 357 0.689080 ATGCATGGTCGTCTCCTCCT 60.689 55.000 0.00 0.00 0.00 3.69
357 358 1.040646 TATGCATGGTCGTCTCCTCC 58.959 55.000 10.16 0.00 0.00 4.30
358 359 4.727507 ATATATGCATGGTCGTCTCCTC 57.272 45.455 10.16 0.00 0.00 3.71
359 360 5.489792 AAATATATGCATGGTCGTCTCCT 57.510 39.130 10.16 0.00 0.00 3.69
360 361 5.292101 GCTAAATATATGCATGGTCGTCTCC 59.708 44.000 10.16 0.00 0.00 3.71
361 362 6.102663 AGCTAAATATATGCATGGTCGTCTC 58.897 40.000 10.16 0.00 0.00 3.36
362 363 6.042638 AGCTAAATATATGCATGGTCGTCT 57.957 37.500 10.16 0.00 0.00 4.18
363 364 6.727824 AAGCTAAATATATGCATGGTCGTC 57.272 37.500 10.16 0.00 0.00 4.20
364 365 8.615878 TTAAAGCTAAATATATGCATGGTCGT 57.384 30.769 10.16 0.00 0.00 4.34
376 377 8.912988 TGGCTGCAACTTATTAAAGCTAAATAT 58.087 29.630 0.50 0.00 36.05 1.28
377 378 8.287439 TGGCTGCAACTTATTAAAGCTAAATA 57.713 30.769 0.50 0.00 36.05 1.40
378 379 7.169158 TGGCTGCAACTTATTAAAGCTAAAT 57.831 32.000 0.50 0.00 36.05 1.40
379 380 6.582677 TGGCTGCAACTTATTAAAGCTAAA 57.417 33.333 0.50 0.00 36.05 1.85
380 381 6.773976 ATGGCTGCAACTTATTAAAGCTAA 57.226 33.333 0.50 0.00 36.05 3.09
381 382 7.468631 GCTTATGGCTGCAACTTATTAAAGCTA 60.469 37.037 0.50 0.00 35.57 3.32
382 383 6.681368 GCTTATGGCTGCAACTTATTAAAGCT 60.681 38.462 0.50 0.00 35.57 3.74
383 384 5.460091 GCTTATGGCTGCAACTTATTAAAGC 59.540 40.000 0.50 0.00 35.57 3.51
384 385 5.979517 GGCTTATGGCTGCAACTTATTAAAG 59.020 40.000 0.50 0.00 41.46 1.85
385 386 5.163457 GGGCTTATGGCTGCAACTTATTAAA 60.163 40.000 0.50 0.00 41.46 1.52
386 387 4.340950 GGGCTTATGGCTGCAACTTATTAA 59.659 41.667 0.50 0.00 41.46 1.40
387 388 3.888930 GGGCTTATGGCTGCAACTTATTA 59.111 43.478 0.50 0.00 41.46 0.98
388 389 2.695147 GGGCTTATGGCTGCAACTTATT 59.305 45.455 0.50 0.00 41.46 1.40
389 390 2.310538 GGGCTTATGGCTGCAACTTAT 58.689 47.619 0.50 0.00 41.46 1.73
390 391 1.684869 GGGGCTTATGGCTGCAACTTA 60.685 52.381 0.50 0.00 41.46 2.24
391 392 0.972471 GGGGCTTATGGCTGCAACTT 60.972 55.000 0.50 0.00 41.46 2.66
392 393 1.380380 GGGGCTTATGGCTGCAACT 60.380 57.895 0.50 0.00 41.46 3.16
393 394 2.426406 GGGGGCTTATGGCTGCAAC 61.426 63.158 0.50 0.00 41.46 4.17
394 395 2.043046 GGGGGCTTATGGCTGCAA 60.043 61.111 0.50 0.00 41.46 4.08
408 409 7.987906 CTGGAAGATTCTCATAGATGAGGGGG 61.988 50.000 17.41 0.00 45.61 5.40
409 410 5.046448 CTGGAAGATTCTCATAGATGAGGGG 60.046 48.000 17.41 0.00 45.61 4.79
410 411 5.779260 TCTGGAAGATTCTCATAGATGAGGG 59.221 44.000 17.41 0.00 45.97 4.30
411 412 6.914654 TCTGGAAGATTCTCATAGATGAGG 57.085 41.667 17.41 2.13 45.97 3.86
426 427 0.250234 CCTGCGATTGGTCTGGAAGA 59.750 55.000 0.00 0.00 43.69 2.87
427 428 1.372087 GCCTGCGATTGGTCTGGAAG 61.372 60.000 0.00 0.00 0.00 3.46
428 429 1.377202 GCCTGCGATTGGTCTGGAA 60.377 57.895 0.00 0.00 0.00 3.53
429 430 2.244117 GAGCCTGCGATTGGTCTGGA 62.244 60.000 0.00 0.00 0.00 3.86
430 431 1.817099 GAGCCTGCGATTGGTCTGG 60.817 63.158 0.00 0.00 0.00 3.86
431 432 1.078918 TGAGCCTGCGATTGGTCTG 60.079 57.895 0.00 0.00 0.00 3.51
432 433 1.078848 GTGAGCCTGCGATTGGTCT 60.079 57.895 0.00 0.00 0.00 3.85
433 434 0.955428 TTGTGAGCCTGCGATTGGTC 60.955 55.000 0.00 0.00 0.00 4.02
434 435 1.073025 TTGTGAGCCTGCGATTGGT 59.927 52.632 0.00 0.00 0.00 3.67
435 436 1.236616 TGTTGTGAGCCTGCGATTGG 61.237 55.000 0.00 0.00 0.00 3.16
436 437 0.806868 ATGTTGTGAGCCTGCGATTG 59.193 50.000 0.00 0.00 0.00 2.67
437 438 2.401583 TATGTTGTGAGCCTGCGATT 57.598 45.000 0.00 0.00 0.00 3.34
438 439 2.283298 CTTATGTTGTGAGCCTGCGAT 58.717 47.619 0.00 0.00 0.00 4.58
439 440 1.675714 CCTTATGTTGTGAGCCTGCGA 60.676 52.381 0.00 0.00 0.00 5.10
440 441 0.729116 CCTTATGTTGTGAGCCTGCG 59.271 55.000 0.00 0.00 0.00 5.18
441 442 1.098050 CCCTTATGTTGTGAGCCTGC 58.902 55.000 0.00 0.00 0.00 4.85
442 443 1.098050 GCCCTTATGTTGTGAGCCTG 58.902 55.000 0.00 0.00 0.00 4.85
443 444 0.034089 GGCCCTTATGTTGTGAGCCT 60.034 55.000 0.00 0.00 36.00 4.58
444 445 0.323360 TGGCCCTTATGTTGTGAGCC 60.323 55.000 0.00 0.00 39.41 4.70
445 446 1.098050 CTGGCCCTTATGTTGTGAGC 58.902 55.000 0.00 0.00 0.00 4.26
446 447 2.787473 TCTGGCCCTTATGTTGTGAG 57.213 50.000 0.00 0.00 0.00 3.51
447 448 3.010027 TGAATCTGGCCCTTATGTTGTGA 59.990 43.478 0.00 0.00 0.00 3.58
448 449 3.355378 TGAATCTGGCCCTTATGTTGTG 58.645 45.455 0.00 0.00 0.00 3.33
449 450 3.737559 TGAATCTGGCCCTTATGTTGT 57.262 42.857 0.00 0.00 0.00 3.32
450 451 3.243636 GCATGAATCTGGCCCTTATGTTG 60.244 47.826 0.00 0.00 0.00 3.33
451 452 2.961062 GCATGAATCTGGCCCTTATGTT 59.039 45.455 0.00 0.00 0.00 2.71
452 453 2.590821 GCATGAATCTGGCCCTTATGT 58.409 47.619 0.00 0.00 0.00 2.29
453 454 1.538512 CGCATGAATCTGGCCCTTATG 59.461 52.381 0.00 0.00 0.00 1.90
454 455 1.143684 ACGCATGAATCTGGCCCTTAT 59.856 47.619 0.00 0.00 0.00 1.73
455 456 0.546122 ACGCATGAATCTGGCCCTTA 59.454 50.000 0.00 0.00 0.00 2.69
456 457 0.323725 AACGCATGAATCTGGCCCTT 60.324 50.000 0.00 0.00 0.00 3.95
457 458 1.033746 CAACGCATGAATCTGGCCCT 61.034 55.000 0.00 0.00 0.00 5.19
458 459 1.434696 CAACGCATGAATCTGGCCC 59.565 57.895 0.00 0.00 0.00 5.80
459 460 1.434696 CCAACGCATGAATCTGGCC 59.565 57.895 0.00 0.00 0.00 5.36
460 461 1.031571 TCCCAACGCATGAATCTGGC 61.032 55.000 0.00 0.00 0.00 4.85
461 462 0.734889 GTCCCAACGCATGAATCTGG 59.265 55.000 0.00 0.00 0.00 3.86
462 463 1.667724 GAGTCCCAACGCATGAATCTG 59.332 52.381 0.00 0.00 0.00 2.90
463 464 1.740380 CGAGTCCCAACGCATGAATCT 60.740 52.381 0.00 0.00 0.00 2.40
464 465 0.652592 CGAGTCCCAACGCATGAATC 59.347 55.000 0.00 0.00 0.00 2.52
465 466 0.744414 CCGAGTCCCAACGCATGAAT 60.744 55.000 0.00 0.00 0.00 2.57
466 467 1.375396 CCGAGTCCCAACGCATGAA 60.375 57.895 0.00 0.00 0.00 2.57
467 468 2.264480 CCGAGTCCCAACGCATGA 59.736 61.111 0.00 0.00 0.00 3.07
468 469 2.819595 CCCGAGTCCCAACGCATG 60.820 66.667 0.00 0.00 0.00 4.06
469 470 3.000819 TCCCGAGTCCCAACGCAT 61.001 61.111 0.00 0.00 0.00 4.73
470 471 3.998672 GTCCCGAGTCCCAACGCA 61.999 66.667 0.00 0.00 0.00 5.24
471 472 3.998672 TGTCCCGAGTCCCAACGC 61.999 66.667 0.00 0.00 0.00 4.84
472 473 1.246056 TAGTGTCCCGAGTCCCAACG 61.246 60.000 0.00 0.00 0.00 4.10
473 474 0.531200 CTAGTGTCCCGAGTCCCAAC 59.469 60.000 0.00 0.00 0.00 3.77
474 475 0.406750 TCTAGTGTCCCGAGTCCCAA 59.593 55.000 0.00 0.00 0.00 4.12
475 476 0.406750 TTCTAGTGTCCCGAGTCCCA 59.593 55.000 0.00 0.00 0.00 4.37
476 477 1.777941 ATTCTAGTGTCCCGAGTCCC 58.222 55.000 0.00 0.00 0.00 4.46
477 478 2.622470 GGTATTCTAGTGTCCCGAGTCC 59.378 54.545 0.00 0.00 0.00 3.85
478 479 3.553904 AGGTATTCTAGTGTCCCGAGTC 58.446 50.000 0.00 0.00 0.00 3.36
479 480 3.666345 AGGTATTCTAGTGTCCCGAGT 57.334 47.619 0.00 0.00 0.00 4.18
480 481 5.221204 GGTTTAGGTATTCTAGTGTCCCGAG 60.221 48.000 0.00 0.00 0.00 4.63
481 482 4.646492 GGTTTAGGTATTCTAGTGTCCCGA 59.354 45.833 0.00 0.00 0.00 5.14
482 483 4.403432 TGGTTTAGGTATTCTAGTGTCCCG 59.597 45.833 0.00 0.00 0.00 5.14
483 484 5.396101 GGTGGTTTAGGTATTCTAGTGTCCC 60.396 48.000 0.00 0.00 0.00 4.46
484 485 5.188359 TGGTGGTTTAGGTATTCTAGTGTCC 59.812 44.000 0.00 0.00 0.00 4.02
485 486 6.290294 TGGTGGTTTAGGTATTCTAGTGTC 57.710 41.667 0.00 0.00 0.00 3.67
486 487 6.352737 CCATGGTGGTTTAGGTATTCTAGTGT 60.353 42.308 2.57 0.00 31.35 3.55
487 488 6.055588 CCATGGTGGTTTAGGTATTCTAGTG 58.944 44.000 2.57 0.00 31.35 2.74
488 489 6.248569 CCATGGTGGTTTAGGTATTCTAGT 57.751 41.667 2.57 0.00 31.35 2.57
514 515 3.134458 GGTCAATATCTGCTTCCCGAAG 58.866 50.000 0.00 0.00 41.24 3.79
515 516 2.158813 GGGTCAATATCTGCTTCCCGAA 60.159 50.000 0.00 0.00 0.00 4.30
516 517 1.416401 GGGTCAATATCTGCTTCCCGA 59.584 52.381 0.00 0.00 0.00 5.14
517 518 1.140852 TGGGTCAATATCTGCTTCCCG 59.859 52.381 0.00 0.00 34.80 5.14
518 519 3.515602 ATGGGTCAATATCTGCTTCCC 57.484 47.619 0.00 0.00 33.57 3.97
519 520 4.889409 TGAAATGGGTCAATATCTGCTTCC 59.111 41.667 0.00 0.00 0.00 3.46
520 521 5.221126 GGTGAAATGGGTCAATATCTGCTTC 60.221 44.000 0.00 0.00 0.00 3.86
521 522 4.646492 GGTGAAATGGGTCAATATCTGCTT 59.354 41.667 0.00 0.00 0.00 3.91
522 523 4.210331 GGTGAAATGGGTCAATATCTGCT 58.790 43.478 0.00 0.00 0.00 4.24
523 524 3.953612 TGGTGAAATGGGTCAATATCTGC 59.046 43.478 0.00 0.00 0.00 4.26
524 525 5.010314 CCATGGTGAAATGGGTCAATATCTG 59.990 44.000 2.57 0.00 43.02 2.90
525 526 5.142639 CCATGGTGAAATGGGTCAATATCT 58.857 41.667 2.57 0.00 43.02 1.98
526 527 5.458041 CCATGGTGAAATGGGTCAATATC 57.542 43.478 2.57 0.00 43.02 1.63
535 536 1.250154 ACACGCCCATGGTGAAATGG 61.250 55.000 11.73 0.00 45.82 3.16
536 537 0.602562 AACACGCCCATGGTGAAATG 59.397 50.000 11.73 4.19 38.73 2.32
537 538 1.000731 CAAACACGCCCATGGTGAAAT 59.999 47.619 11.73 0.00 38.73 2.17
538 539 0.387202 CAAACACGCCCATGGTGAAA 59.613 50.000 11.73 0.00 38.73 2.69
539 540 1.459455 CCAAACACGCCCATGGTGAA 61.459 55.000 11.73 0.00 38.73 3.18
540 541 1.900981 CCAAACACGCCCATGGTGA 60.901 57.895 11.73 0.00 38.73 4.02
541 542 1.743321 AACCAAACACGCCCATGGTG 61.743 55.000 11.73 5.04 45.15 4.17
542 543 2.197324 ACCAAACACGCCCATGGT 59.803 55.556 11.73 0.00 41.25 3.55
543 544 0.319469 GAAACCAAACACGCCCATGG 60.319 55.000 4.14 4.14 38.91 3.66
544 545 0.319469 GGAAACCAAACACGCCCATG 60.319 55.000 0.00 0.00 0.00 3.66
545 546 0.469144 AGGAAACCAAACACGCCCAT 60.469 50.000 0.00 0.00 0.00 4.00
546 547 1.076632 AGGAAACCAAACACGCCCA 60.077 52.632 0.00 0.00 0.00 5.36
561 562 2.268920 GTTGGGCTCGATGCAGGA 59.731 61.111 8.71 0.00 45.15 3.86
564 565 2.046023 CTGGTTGGGCTCGATGCA 60.046 61.111 8.71 0.00 45.15 3.96
606 607 1.762370 AGGAAAACCAGCCAACCAAAG 59.238 47.619 0.00 0.00 0.00 2.77
615 616 1.367471 GCCCAACAGGAAAACCAGC 59.633 57.895 0.00 0.00 38.24 4.85
800 803 0.335019 GGGGGTGAGGCTAATTTGGT 59.665 55.000 0.00 0.00 0.00 3.67
853 889 1.067142 AGCGTAGACCTGAAATCGCAA 60.067 47.619 9.76 0.00 44.83 4.85
920 980 0.188342 AACAACAAGGGGAGCACCAT 59.812 50.000 1.58 0.00 42.91 3.55
935 995 2.203280 CCAGACGGTGGCCAACAA 60.203 61.111 23.36 0.00 40.39 2.83
1016 1076 0.992695 GCTAACAAAGGGAGAGGGGT 59.007 55.000 0.00 0.00 0.00 4.95
1023 1084 2.054799 ACCACTGAGCTAACAAAGGGA 58.945 47.619 0.00 0.00 0.00 4.20
1125 1186 1.476471 GCTGCTGCCTGGATTATCAGT 60.476 52.381 3.85 0.00 33.14 3.41
1199 1260 0.036010 CAAAGGTCTCCCAGCACGAT 60.036 55.000 0.00 0.00 0.00 3.73
1241 1302 0.397254 GATCCTCTCCTGTTCCCGGA 60.397 60.000 0.73 0.00 0.00 5.14
1269 1330 5.411361 GTCATTGCAGTTGTAGATGTGGTTA 59.589 40.000 0.00 0.00 0.00 2.85
1273 1334 3.433274 ACGTCATTGCAGTTGTAGATGTG 59.567 43.478 0.00 0.00 0.00 3.21
1451 1512 3.562141 CCTAAACGTGTTGTGAATGACCA 59.438 43.478 0.00 0.00 0.00 4.02
1525 1586 2.515853 TCATCTCTCCTCTAAGCTCCCA 59.484 50.000 0.00 0.00 0.00 4.37
1562 1623 1.909302 GAATCTTGGGTGGAGTCTGGA 59.091 52.381 0.00 0.00 0.00 3.86
1655 1718 8.773645 TGTTAGTGATGAACTTGAACAATACAG 58.226 33.333 0.00 0.00 40.56 2.74
1735 1798 2.114616 CCTAGGAACTCTGGCAGTGAT 58.885 52.381 22.25 11.26 41.75 3.06
1797 1860 3.131709 ACAGTAGCAAGCACATTCTGT 57.868 42.857 0.00 0.00 0.00 3.41
1813 1876 6.017605 GTGAACATCAGATCAAAGTCAACAGT 60.018 38.462 0.00 0.00 0.00 3.55
1925 1989 1.270625 CCAAGGTAGAACTTGCCGTCA 60.271 52.381 1.54 0.00 44.98 4.35
1980 2044 5.280830 GGTACCTTATTTTCCTGAAGGGTGA 60.281 44.000 4.06 0.00 43.47 4.02
1996 2060 5.014858 AGAACTCGTTGAGATGGTACCTTA 58.985 41.667 14.36 0.00 33.32 2.69
2074 2138 4.773149 CCCTCTCAACAGTTACTCTAAGGT 59.227 45.833 0.00 0.00 0.00 3.50
2141 2205 1.564348 GTGGAGTATGGGTGGAATGGT 59.436 52.381 0.00 0.00 0.00 3.55
2240 2304 4.347865 GGCTCGACCTCTTCCTCT 57.652 61.111 0.00 0.00 34.51 3.69
2260 2324 0.375106 GCCAGAGCTAACAACATCGC 59.625 55.000 0.00 0.00 35.50 4.58
2301 2365 5.067805 ACCTTTTGTTCTTCCAAGTGTCATC 59.932 40.000 0.00 0.00 0.00 2.92
2307 2371 4.349365 TCCAACCTTTTGTTCTTCCAAGT 58.651 39.130 0.00 0.00 34.00 3.16
2335 2399 2.821969 CTGTTAAGCCACATTGCCTCTT 59.178 45.455 0.00 0.00 0.00 2.85
2414 2481 3.694043 ACTGCTTCTTCTTCCTCTTCC 57.306 47.619 0.00 0.00 0.00 3.46
2434 2519 1.206610 CCTCTTCTGCTTCTGCTGCTA 59.793 52.381 0.00 0.00 40.48 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.