Multiple sequence alignment - TraesCS3B01G392700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G392700 chr3B 100.000 4326 0 0 1 4326 618158351 618154026 0.000000e+00 7989.0
1 TraesCS3B01G392700 chr3B 100.000 363 0 0 4616 4978 618153736 618153374 0.000000e+00 671.0
2 TraesCS3B01G392700 chr3B 87.251 251 29 1 1539 1789 618442741 618442494 2.930000e-72 283.0
3 TraesCS3B01G392700 chr3B 78.358 134 29 0 1912 2045 618442400 618442267 2.470000e-13 87.9
4 TraesCS3B01G392700 chr3D 94.748 1904 81 11 2187 4077 464809369 464807472 0.000000e+00 2944.0
5 TraesCS3B01G392700 chr3D 90.612 2109 95 40 1 2057 464811512 464809455 0.000000e+00 2702.0
6 TraesCS3B01G392700 chr3D 82.895 988 158 11 2585 3565 465027156 465026173 0.000000e+00 878.0
7 TraesCS3B01G392700 chr3D 88.446 251 26 2 1539 1789 465027713 465027466 2.910000e-77 300.0
8 TraesCS3B01G392700 chr3D 79.104 134 28 0 1912 2045 465027378 465027245 5.310000e-15 93.5
9 TraesCS3B01G392700 chr3A 92.779 1925 96 22 2175 4078 608196179 608194277 0.000000e+00 2745.0
10 TraesCS3B01G392700 chr3A 89.411 2087 98 45 28 2070 608198266 608196259 0.000000e+00 2516.0
11 TraesCS3B01G392700 chr3A 80.359 1227 199 36 2585 3792 608347369 608346166 0.000000e+00 893.0
12 TraesCS3B01G392700 chr3A 88.446 251 26 2 1539 1789 608347931 608347684 2.910000e-77 300.0
13 TraesCS3B01G392700 chr3A 79.851 134 27 0 1912 2045 608347589 608347456 1.140000e-16 99.0
14 TraesCS3B01G392700 chr7A 83.698 1233 177 19 2582 3794 150022493 150023721 0.000000e+00 1142.0
15 TraesCS3B01G392700 chr7A 83.609 1208 173 20 2589 3794 149862101 149860917 0.000000e+00 1110.0
16 TraesCS3B01G392700 chr7A 86.800 250 30 1 1539 1788 150022026 150022272 4.910000e-70 276.0
17 TraesCS3B01G392700 chr7D 83.993 1212 168 18 2586 3794 149181890 149183078 0.000000e+00 1140.0
18 TraesCS3B01G392700 chr7D 83.773 1214 166 23 2588 3794 149085145 149083956 0.000000e+00 1122.0
19 TraesCS3B01G392700 chr7D 88.800 250 25 2 1539 1788 149181430 149181676 2.250000e-78 303.0
20 TraesCS3B01G392700 chr7D 88.430 242 28 0 1539 1780 149085623 149085382 4.870000e-75 292.0
21 TraesCS3B01G392700 chr7D 86.335 161 22 0 1236 1396 149181275 149181435 5.120000e-40 176.0
22 TraesCS3B01G392700 chr7D 92.593 81 6 0 1967 2047 149181728 149181808 3.150000e-22 117.0
23 TraesCS3B01G392700 chr7B 86.864 982 126 1 2589 3567 111943059 111944040 0.000000e+00 1096.0
24 TraesCS3B01G392700 chr7B 88.400 250 26 1 1539 1788 111942603 111942849 1.050000e-76 298.0
25 TraesCS3B01G392700 chr7B 86.503 163 22 0 1234 1396 111942446 111942608 3.960000e-41 180.0
26 TraesCS3B01G392700 chr7B 85.821 134 19 0 3661 3794 111944148 111944281 5.190000e-30 143.0
27 TraesCS3B01G392700 chr2B 80.379 1213 210 16 2588 3794 232290701 232289511 0.000000e+00 896.0
28 TraesCS3B01G392700 chr2A 80.066 1214 219 18 2587 3794 185364109 185362913 0.000000e+00 880.0
29 TraesCS3B01G392700 chr5B 87.791 172 18 3 1234 1404 679311135 679311304 1.090000e-46 198.0
30 TraesCS3B01G392700 chr5D 86.550 171 22 1 1234 1404 538255176 538255345 2.370000e-43 187.0
31 TraesCS3B01G392700 chr2D 86.550 171 22 1 1226 1396 165485375 165485206 2.370000e-43 187.0
32 TraesCS3B01G392700 chr1D 81.765 170 26 5 1233 1400 381019029 381019195 2.420000e-28 137.0
33 TraesCS3B01G392700 chr1A 82.803 157 24 3 1245 1400 481673989 481674143 2.420000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G392700 chr3B 618153374 618158351 4977 True 4330.000000 7989 100.000000 1 4978 2 chr3B.!!$R1 4977
1 TraesCS3B01G392700 chr3D 464807472 464811512 4040 True 2823.000000 2944 92.680000 1 4077 2 chr3D.!!$R1 4076
2 TraesCS3B01G392700 chr3D 465026173 465027713 1540 True 423.833333 878 83.481667 1539 3565 3 chr3D.!!$R2 2026
3 TraesCS3B01G392700 chr3A 608194277 608198266 3989 True 2630.500000 2745 91.095000 28 4078 2 chr3A.!!$R1 4050
4 TraesCS3B01G392700 chr3A 608346166 608347931 1765 True 430.666667 893 82.885333 1539 3792 3 chr3A.!!$R2 2253
5 TraesCS3B01G392700 chr7A 149860917 149862101 1184 True 1110.000000 1110 83.609000 2589 3794 1 chr7A.!!$R1 1205
6 TraesCS3B01G392700 chr7A 150022026 150023721 1695 False 709.000000 1142 85.249000 1539 3794 2 chr7A.!!$F1 2255
7 TraesCS3B01G392700 chr7D 149083956 149085623 1667 True 707.000000 1122 86.101500 1539 3794 2 chr7D.!!$R1 2255
8 TraesCS3B01G392700 chr7D 149181275 149183078 1803 False 434.000000 1140 87.930250 1236 3794 4 chr7D.!!$F1 2558
9 TraesCS3B01G392700 chr7B 111942446 111944281 1835 False 429.250000 1096 86.897000 1234 3794 4 chr7B.!!$F1 2560
10 TraesCS3B01G392700 chr2B 232289511 232290701 1190 True 896.000000 896 80.379000 2588 3794 1 chr2B.!!$R1 1206
11 TraesCS3B01G392700 chr2A 185362913 185364109 1196 True 880.000000 880 80.066000 2587 3794 1 chr2A.!!$R1 1207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 195 0.673985 CAACTGGTCCGTCAGTCTCA 59.326 55.0 4.23 0.0 46.17 3.27 F
1793 1849 0.246635 CCCGTCATCTTCGGTCAGTT 59.753 55.0 3.78 0.0 45.63 3.16 F
2059 2124 0.038892 AAGGTACGTACGTGGTGCAG 60.039 55.0 30.25 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2001 0.249120 CCGTGTTGACTATGGCCTCA 59.751 55.0 3.32 0.0 0.00 3.86 R
3699 3864 0.250858 TTCTCAGACCCCACGTCGTA 60.251 55.0 0.00 0.0 46.92 3.43 R
4033 4203 1.094785 CCGTGGGCTAACAGAAATGG 58.905 55.0 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.939802 ACATTTTCTTCTATAAGTAACGAGGTT 57.060 29.630 0.00 0.00 34.13 3.50
89 90 7.331440 TGTTGAATTCTTTGCGCAAATTATCAT 59.669 29.630 33.64 18.44 0.00 2.45
94 95 5.283294 TCTTTGCGCAAATTATCATGGATG 58.717 37.500 33.64 18.05 0.00 3.51
97 98 3.631227 TGCGCAAATTATCATGGATGTGA 59.369 39.130 8.16 0.00 0.00 3.58
98 99 4.278919 TGCGCAAATTATCATGGATGTGAT 59.721 37.500 8.16 0.00 41.49 3.06
99 100 5.472820 TGCGCAAATTATCATGGATGTGATA 59.527 36.000 8.16 0.00 39.45 2.15
100 101 6.151480 TGCGCAAATTATCATGGATGTGATAT 59.849 34.615 8.16 0.00 39.93 1.63
111 113 9.857656 ATCATGGATGTGATATTGAGTAAAACT 57.142 29.630 0.00 0.00 37.08 2.66
163 166 5.968676 TGCCATAATTACTCCTACCAAGT 57.031 39.130 0.00 0.00 0.00 3.16
168 171 7.502561 GCCATAATTACTCCTACCAAGTTGATT 59.497 37.037 3.87 0.00 0.00 2.57
182 185 2.754472 GTTGATTTTGGCAACTGGTCC 58.246 47.619 0.00 0.00 41.71 4.46
192 195 0.673985 CAACTGGTCCGTCAGTCTCA 59.326 55.000 4.23 0.00 46.17 3.27
207 210 6.555315 GTCAGTCTCACACATTTTCTTTTGT 58.445 36.000 0.00 0.00 0.00 2.83
208 211 6.470235 GTCAGTCTCACACATTTTCTTTTGTG 59.530 38.462 1.74 1.74 46.76 3.33
210 213 5.101628 GTCTCACACATTTTCTTTTGTGCA 58.898 37.500 3.13 0.00 45.59 4.57
251 256 6.179756 TCGGAATTCATCAATCTCAAGGAAA 58.820 36.000 7.93 0.00 0.00 3.13
311 317 5.457633 GGGCCCCACTACATTATATTGACTT 60.458 44.000 12.23 0.00 0.00 3.01
421 427 3.508762 GATTTCTCAGCCGTCGTTCTTA 58.491 45.455 0.00 0.00 0.00 2.10
508 522 1.798813 CGCGCTTTTACCTCTCACTTT 59.201 47.619 5.56 0.00 0.00 2.66
554 572 1.396301 GCGCTGTAGTAGTACGTGACT 59.604 52.381 0.00 1.20 42.69 3.41
567 585 2.077155 CGTGACTACGCATGCAAATC 57.923 50.000 19.57 9.70 44.11 2.17
609 634 4.201940 CGATCATTTGCATGCTACTCCAAA 60.202 41.667 20.33 10.10 0.00 3.28
810 847 3.195002 CGTGCATGTACAGCCCCG 61.195 66.667 14.55 6.84 0.00 5.73
811 848 2.267642 GTGCATGTACAGCCCCGA 59.732 61.111 9.26 0.00 0.00 5.14
903 946 2.722094 GCCAGTTCCACACATCCATTA 58.278 47.619 0.00 0.00 0.00 1.90
904 947 3.088532 GCCAGTTCCACACATCCATTAA 58.911 45.455 0.00 0.00 0.00 1.40
905 948 3.701040 GCCAGTTCCACACATCCATTAAT 59.299 43.478 0.00 0.00 0.00 1.40
906 949 4.160252 GCCAGTTCCACACATCCATTAATT 59.840 41.667 0.00 0.00 0.00 1.40
960 1003 1.225983 TCTCCTCGAGAGCTCAGGG 59.774 63.158 17.77 9.36 42.90 4.45
1026 1073 1.070758 CTAGACGCTACCATGGCCATT 59.929 52.381 17.92 5.10 0.00 3.16
1035 1082 4.624125 GCTACCATGGCCATTACTATCTCC 60.624 50.000 17.92 0.00 0.00 3.71
1053 1100 1.216710 CTCCGGTCTTCACTGCTCC 59.783 63.158 0.00 0.00 0.00 4.70
1073 1120 1.383109 TCCTCATGGCGACCCTGAT 60.383 57.895 0.00 0.00 0.00 2.90
1144 1191 1.585006 CGTCCACGTCCAGTAGCTT 59.415 57.895 0.00 0.00 34.11 3.74
1145 1192 0.732880 CGTCCACGTCCAGTAGCTTG 60.733 60.000 0.00 0.00 34.11 4.01
1146 1193 0.389948 GTCCACGTCCAGTAGCTTGG 60.390 60.000 0.00 0.00 39.70 3.61
1147 1194 1.741770 CCACGTCCAGTAGCTTGGC 60.742 63.158 0.00 0.00 38.16 4.52
1148 1195 1.741770 CACGTCCAGTAGCTTGGCC 60.742 63.158 0.00 0.00 38.16 5.36
1149 1196 1.913762 ACGTCCAGTAGCTTGGCCT 60.914 57.895 3.32 0.00 38.16 5.19
1162 1209 0.464373 TTGGCCTAGCTAGTGCATGC 60.464 55.000 25.74 11.82 42.74 4.06
1265 1321 3.173240 GCGAACGTGACGAGGCTC 61.173 66.667 13.70 3.87 0.00 4.70
1407 1463 3.741476 GGTACGTGCGACCGACCT 61.741 66.667 0.00 0.00 0.00 3.85
1424 1480 3.542648 GACCTACATTCCCTGGCTTTAC 58.457 50.000 0.00 0.00 0.00 2.01
1433 1489 1.065709 CCCTGGCTTTACGCTTTAGGA 60.066 52.381 0.00 0.00 36.78 2.94
1442 1498 6.404403 GGCTTTACGCTTTAGGATTTAGCTTT 60.404 38.462 0.00 0.00 39.13 3.51
1448 1504 8.782339 ACGCTTTAGGATTTAGCTTTAGTTTA 57.218 30.769 0.00 0.00 32.80 2.01
1527 1583 3.598562 CTCACGCATCGTCGTCGC 61.599 66.667 0.00 0.00 41.21 5.19
1793 1849 0.246635 CCCGTCATCTTCGGTCAGTT 59.753 55.000 3.78 0.00 45.63 3.16
1794 1850 1.350193 CCGTCATCTTCGGTCAGTTG 58.650 55.000 0.00 0.00 42.62 3.16
1795 1851 1.336887 CCGTCATCTTCGGTCAGTTGT 60.337 52.381 0.00 0.00 42.62 3.32
1812 1868 0.667453 TGTGCTGCTGCGATTGAAAA 59.333 45.000 11.21 0.00 43.34 2.29
1823 1879 3.181492 TGCGATTGAAAACTTGCTGTTGA 60.181 39.130 0.00 0.00 39.13 3.18
1826 1882 5.273170 CGATTGAAAACTTGCTGTTGAGAA 58.727 37.500 0.00 0.00 39.13 2.87
1828 1884 6.418819 CGATTGAAAACTTGCTGTTGAGAAAT 59.581 34.615 0.00 0.00 39.13 2.17
1829 1885 7.357859 CGATTGAAAACTTGCTGTTGAGAAATC 60.358 37.037 0.00 0.00 39.13 2.17
1830 1886 6.206395 TGAAAACTTGCTGTTGAGAAATCA 57.794 33.333 0.00 0.00 39.13 2.57
1831 1887 6.629128 TGAAAACTTGCTGTTGAGAAATCAA 58.371 32.000 0.00 0.00 39.13 2.57
1842 1907 4.982241 TGAGAAATCAACTTGGAGGACT 57.018 40.909 0.00 0.00 0.00 3.85
1845 1910 6.467677 TGAGAAATCAACTTGGAGGACTTAG 58.532 40.000 0.00 0.00 0.00 2.18
1854 1919 8.095169 TCAACTTGGAGGACTTAGAACTAAATC 58.905 37.037 0.00 0.00 0.00 2.17
1857 1922 9.322769 ACTTGGAGGACTTAGAACTAAATCTAA 57.677 33.333 3.69 0.00 39.08 2.10
1877 1942 6.029607 TCTAATTGCGCTTGTGATTTTGATC 58.970 36.000 9.73 0.00 0.00 2.92
1878 1943 2.245795 TGCGCTTGTGATTTTGATCG 57.754 45.000 9.73 0.00 0.00 3.69
1879 1944 1.803555 TGCGCTTGTGATTTTGATCGA 59.196 42.857 9.73 0.00 0.00 3.59
1880 1945 2.169179 GCGCTTGTGATTTTGATCGAC 58.831 47.619 0.00 0.00 0.00 4.20
1889 1954 5.697178 TGTGATTTTGATCGACCGTAAAAGA 59.303 36.000 0.00 0.00 0.00 2.52
1936 2001 0.472471 AATGGTGGTTGTCGGACACT 59.528 50.000 10.97 0.00 35.53 3.55
2059 2124 0.038892 AAGGTACGTACGTGGTGCAG 60.039 55.000 30.25 0.00 0.00 4.41
2070 2135 1.599518 TGGTGCAGTTTACCCAGCG 60.600 57.895 0.00 0.00 37.40 5.18
2075 2140 2.291190 GTGCAGTTTACCCAGCGTTTTA 59.709 45.455 0.00 0.00 0.00 1.52
2077 2142 3.243134 TGCAGTTTACCCAGCGTTTTAAC 60.243 43.478 0.00 0.00 0.00 2.01
2085 2150 3.444388 ACCCAGCGTTTTAACTTGTTCAA 59.556 39.130 0.00 0.00 0.00 2.69
2086 2151 4.041723 CCCAGCGTTTTAACTTGTTCAAG 58.958 43.478 10.50 10.50 0.00 3.02
2089 2154 4.970003 CAGCGTTTTAACTTGTTCAAGGAG 59.030 41.667 15.51 0.00 0.00 3.69
2090 2155 4.879545 AGCGTTTTAACTTGTTCAAGGAGA 59.120 37.500 15.51 0.00 0.00 3.71
2092 2157 6.039382 AGCGTTTTAACTTGTTCAAGGAGAAT 59.961 34.615 15.51 1.53 38.76 2.40
2093 2158 7.227910 AGCGTTTTAACTTGTTCAAGGAGAATA 59.772 33.333 15.51 1.70 38.76 1.75
2094 2159 7.858879 GCGTTTTAACTTGTTCAAGGAGAATAA 59.141 33.333 15.51 5.63 38.76 1.40
2104 2169 8.208718 TGTTCAAGGAGAATAAAATGATACCG 57.791 34.615 0.00 0.00 38.76 4.02
2105 2170 7.827236 TGTTCAAGGAGAATAAAATGATACCGT 59.173 33.333 0.00 0.00 38.76 4.83
2106 2171 7.786178 TCAAGGAGAATAAAATGATACCGTG 57.214 36.000 0.00 0.00 0.00 4.94
2109 2174 5.527582 AGGAGAATAAAATGATACCGTGCAC 59.472 40.000 6.82 6.82 0.00 4.57
2110 2175 5.295787 GGAGAATAAAATGATACCGTGCACA 59.704 40.000 18.64 0.00 0.00 4.57
2111 2176 6.017109 GGAGAATAAAATGATACCGTGCACAT 60.017 38.462 18.64 6.75 0.00 3.21
2112 2177 6.959361 AGAATAAAATGATACCGTGCACATC 58.041 36.000 18.64 12.82 0.00 3.06
2113 2178 6.542005 AGAATAAAATGATACCGTGCACATCA 59.458 34.615 18.64 18.07 33.47 3.07
2114 2179 4.621068 AAAATGATACCGTGCACATCAG 57.379 40.909 18.64 4.62 32.51 2.90
2115 2180 2.988010 ATGATACCGTGCACATCAGT 57.012 45.000 18.64 10.57 32.51 3.41
2138 2203 5.346822 GTGATGCTAAACCTGCAGAAATTTG 59.653 40.000 17.39 8.95 44.04 2.32
2139 2204 4.935352 TGCTAAACCTGCAGAAATTTGT 57.065 36.364 17.39 0.00 35.31 2.83
2159 2224 1.238439 TGTGCAAAAGGTAGAGCTGC 58.762 50.000 0.00 0.00 0.00 5.25
2161 2226 1.198637 GTGCAAAAGGTAGAGCTGCTG 59.801 52.381 7.01 0.00 34.10 4.41
2162 2227 1.072173 TGCAAAAGGTAGAGCTGCTGA 59.928 47.619 7.01 0.00 34.10 4.26
2163 2228 2.290514 TGCAAAAGGTAGAGCTGCTGAT 60.291 45.455 7.01 0.00 34.10 2.90
2164 2229 3.055167 TGCAAAAGGTAGAGCTGCTGATA 60.055 43.478 7.01 0.00 34.10 2.15
2171 2270 4.099266 AGGTAGAGCTGCTGATAGACAAAG 59.901 45.833 7.01 0.00 0.00 2.77
2183 2282 5.129634 TGATAGACAAAGGTGTTTGCAGAA 58.870 37.500 0.00 0.00 46.13 3.02
2209 2315 4.120792 TGTGCTTTCTGTGCATTTTTCA 57.879 36.364 0.00 0.00 42.69 2.69
2233 2339 4.174009 CCTTGTACTGACGTAATCACCAG 58.826 47.826 0.00 0.00 32.37 4.00
2253 2359 0.251653 AGACAAGTACGCCAGGAGGA 60.252 55.000 0.00 0.00 36.89 3.71
2282 2392 6.649973 CCAATCAAAATCACCAAAAGTGCATA 59.350 34.615 0.00 0.00 46.81 3.14
2308 2418 5.374071 ACAAGATTTCGGTGTTACTTCCTT 58.626 37.500 0.00 0.00 0.00 3.36
2332 2442 0.740737 CGGAAAGGGAATGGTGCATC 59.259 55.000 0.00 0.00 0.00 3.91
2466 2576 5.856455 GCTGCGTGATAAACAAAACATTAGT 59.144 36.000 0.00 0.00 0.00 2.24
2510 2620 2.264005 ATTGGGTTGTGCAAGTCGTA 57.736 45.000 0.00 0.00 0.00 3.43
2530 2644 8.308931 AGTCGTAGTCCTAGATAGATTCTGTAG 58.691 40.741 0.00 0.00 35.79 2.74
2624 2744 2.361230 GGTGGAGCCCGGGAAAAG 60.361 66.667 29.31 0.00 0.00 2.27
2682 2802 0.902516 AGCTCTTCTTCTCCGTGGCT 60.903 55.000 0.00 0.00 0.00 4.75
2786 2906 1.227823 CCACCAACGTCCTGCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
2959 3079 0.811616 GCCGATCTTCAAGCCGATGT 60.812 55.000 1.28 0.00 0.00 3.06
2994 3114 1.597663 GACACCAACTTCGTGACCAAG 59.402 52.381 0.00 0.00 35.17 3.61
3087 3207 0.456221 TCTTCTTCACGATCGGGCTC 59.544 55.000 20.98 0.00 0.00 4.70
3183 3306 0.926720 TCTCCCTAGTGCTCCCCTCT 60.927 60.000 0.00 0.00 0.00 3.69
3198 3321 3.356639 CTCTACGGCGCTCCTGCAA 62.357 63.158 6.90 0.00 39.64 4.08
3201 3324 3.733344 TACGGCGCTCCTGCAATCC 62.733 63.158 6.90 0.00 39.64 3.01
3327 3450 3.706373 GGGACCAAGCTCCTCGCA 61.706 66.667 0.00 0.00 42.61 5.10
3486 3609 1.841663 CGGCCAAGTTCAACCTCGTG 61.842 60.000 2.24 0.00 0.00 4.35
3570 3693 1.884928 GCGGACAACCCAGGTAAACAT 60.885 52.381 0.00 0.00 34.14 2.71
3585 3715 7.011950 CCAGGTAAACATAATTCTACGCAATCA 59.988 37.037 0.00 0.00 0.00 2.57
3624 3783 7.759489 ATGCACTAAGAACCAATTAACTTGA 57.241 32.000 0.00 0.00 36.97 3.02
3643 3802 3.808466 GAGAGATACTCATGTGTGCCA 57.192 47.619 10.62 0.00 44.36 4.92
3653 3818 0.675083 ATGTGTGCCATGGTTGTGTG 59.325 50.000 14.67 0.00 30.69 3.82
3699 3864 1.208535 CATTGCCATTTGGAGGTGCAT 59.791 47.619 0.00 0.00 37.39 3.96
3808 3973 4.348656 CAAATGCTGAATGGACTTCATCG 58.651 43.478 0.00 0.00 42.87 3.84
3918 4084 3.372206 CCCGTTCATAGCTGACTTTCTTG 59.628 47.826 0.00 0.00 0.00 3.02
3920 4086 3.433274 CGTTCATAGCTGACTTTCTTGCA 59.567 43.478 0.00 0.00 0.00 4.08
4041 4211 8.537049 TTTATTTTTGTGAGCATCCATTTCTG 57.463 30.769 0.00 0.00 0.00 3.02
4078 4248 4.107127 TGTGGTTAATACAGCCCAACTT 57.893 40.909 0.00 0.00 0.00 2.66
4079 4249 5.244189 TGTGGTTAATACAGCCCAACTTA 57.756 39.130 0.00 0.00 0.00 2.24
4080 4250 5.005094 TGTGGTTAATACAGCCCAACTTAC 58.995 41.667 0.00 0.00 0.00 2.34
4081 4251 5.005094 GTGGTTAATACAGCCCAACTTACA 58.995 41.667 0.00 0.00 0.00 2.41
4082 4252 5.650703 GTGGTTAATACAGCCCAACTTACAT 59.349 40.000 0.00 0.00 0.00 2.29
4083 4253 5.883673 TGGTTAATACAGCCCAACTTACATC 59.116 40.000 0.00 0.00 0.00 3.06
4084 4254 5.007332 GGTTAATACAGCCCAACTTACATCG 59.993 44.000 0.00 0.00 0.00 3.84
4085 4255 2.018542 TACAGCCCAACTTACATCGC 57.981 50.000 0.00 0.00 0.00 4.58
4086 4256 0.324943 ACAGCCCAACTTACATCGCT 59.675 50.000 0.00 0.00 0.00 4.93
4087 4257 1.553248 ACAGCCCAACTTACATCGCTA 59.447 47.619 0.00 0.00 0.00 4.26
4088 4258 2.170607 ACAGCCCAACTTACATCGCTAT 59.829 45.455 0.00 0.00 0.00 2.97
4089 4259 3.386726 ACAGCCCAACTTACATCGCTATA 59.613 43.478 0.00 0.00 0.00 1.31
4090 4260 4.040461 ACAGCCCAACTTACATCGCTATAT 59.960 41.667 0.00 0.00 0.00 0.86
4091 4261 5.245301 ACAGCCCAACTTACATCGCTATATA 59.755 40.000 0.00 0.00 0.00 0.86
4092 4262 6.070767 ACAGCCCAACTTACATCGCTATATAT 60.071 38.462 0.00 0.00 0.00 0.86
4093 4263 7.123697 ACAGCCCAACTTACATCGCTATATATA 59.876 37.037 0.00 0.00 0.00 0.86
4094 4264 8.144478 CAGCCCAACTTACATCGCTATATATAT 58.856 37.037 0.00 0.00 0.00 0.86
4095 4265 9.363401 AGCCCAACTTACATCGCTATATATATA 57.637 33.333 2.49 2.49 0.00 0.86
4096 4266 9.976511 GCCCAACTTACATCGCTATATATATAA 57.023 33.333 4.06 0.00 0.00 0.98
4109 4279 9.411801 CGCTATATATATAAAGCCTATGTGTGG 57.588 37.037 10.56 0.00 0.00 4.17
4117 4287 9.860650 ATATAAAGCCTATGTGTGGATGTTTAA 57.139 29.630 0.00 0.00 0.00 1.52
4118 4288 5.897377 AAGCCTATGTGTGGATGTTTAAC 57.103 39.130 0.00 0.00 0.00 2.01
4119 4289 4.917385 AGCCTATGTGTGGATGTTTAACA 58.083 39.130 0.00 0.00 0.00 2.41
4120 4290 4.943705 AGCCTATGTGTGGATGTTTAACAG 59.056 41.667 3.63 0.00 0.00 3.16
4121 4291 4.096382 GCCTATGTGTGGATGTTTAACAGG 59.904 45.833 3.63 0.00 0.00 4.00
4122 4292 4.096382 CCTATGTGTGGATGTTTAACAGGC 59.904 45.833 3.63 0.00 0.00 4.85
4123 4293 1.876799 TGTGTGGATGTTTAACAGGCG 59.123 47.619 3.63 0.00 0.00 5.52
4124 4294 0.878416 TGTGGATGTTTAACAGGCGC 59.122 50.000 0.00 0.00 0.00 6.53
4125 4295 1.165270 GTGGATGTTTAACAGGCGCT 58.835 50.000 7.64 0.00 0.00 5.92
4126 4296 1.539827 GTGGATGTTTAACAGGCGCTT 59.460 47.619 7.64 0.00 0.00 4.68
4127 4297 2.030274 GTGGATGTTTAACAGGCGCTTT 60.030 45.455 7.64 0.51 0.00 3.51
4128 4298 2.030363 TGGATGTTTAACAGGCGCTTTG 60.030 45.455 7.64 9.25 0.00 2.77
4129 4299 2.595386 GATGTTTAACAGGCGCTTTGG 58.405 47.619 7.64 0.00 0.00 3.28
4130 4300 1.681538 TGTTTAACAGGCGCTTTGGA 58.318 45.000 7.64 0.00 0.00 3.53
4131 4301 1.335496 TGTTTAACAGGCGCTTTGGAC 59.665 47.619 7.64 5.66 0.00 4.02
4132 4302 0.589223 TTTAACAGGCGCTTTGGACG 59.411 50.000 7.64 0.00 0.00 4.79
4139 4309 2.047655 CGCTTTGGACGCCTGGTA 60.048 61.111 0.00 0.00 0.00 3.25
4140 4310 2.100631 CGCTTTGGACGCCTGGTAG 61.101 63.158 0.00 0.00 0.00 3.18
4141 4311 1.003718 GCTTTGGACGCCTGGTAGT 60.004 57.895 0.00 0.00 0.00 2.73
4142 4312 1.298859 GCTTTGGACGCCTGGTAGTG 61.299 60.000 0.00 0.00 0.00 2.74
4143 4313 0.034896 CTTTGGACGCCTGGTAGTGT 59.965 55.000 0.00 0.00 0.00 3.55
4144 4314 0.250124 TTTGGACGCCTGGTAGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
4145 4315 2.434359 GGACGCCTGGTAGTGTGC 60.434 66.667 0.00 0.00 0.00 4.57
4146 4316 2.342279 GACGCCTGGTAGTGTGCA 59.658 61.111 0.00 0.00 0.00 4.57
4147 4317 1.079127 GACGCCTGGTAGTGTGCAT 60.079 57.895 0.00 0.00 0.00 3.96
4148 4318 0.673644 GACGCCTGGTAGTGTGCATT 60.674 55.000 0.00 0.00 0.00 3.56
4149 4319 0.250727 ACGCCTGGTAGTGTGCATTT 60.251 50.000 0.00 0.00 0.00 2.32
4150 4320 0.881118 CGCCTGGTAGTGTGCATTTT 59.119 50.000 0.00 0.00 0.00 1.82
4151 4321 1.401409 CGCCTGGTAGTGTGCATTTTG 60.401 52.381 0.00 0.00 0.00 2.44
4152 4322 1.669795 GCCTGGTAGTGTGCATTTTGC 60.670 52.381 0.00 0.00 45.29 3.68
4161 4331 2.852507 GCATTTTGCAAACGGGCG 59.147 55.556 12.39 0.00 44.26 6.13
4162 4332 1.953642 GCATTTTGCAAACGGGCGT 60.954 52.632 12.39 0.00 44.26 5.68
4163 4333 1.885814 GCATTTTGCAAACGGGCGTC 61.886 55.000 12.39 0.00 44.26 5.19
4164 4334 0.318614 CATTTTGCAAACGGGCGTCT 60.319 50.000 12.39 0.00 36.28 4.18
4165 4335 1.068885 CATTTTGCAAACGGGCGTCTA 60.069 47.619 12.39 0.00 36.28 2.59
4166 4336 1.022735 TTTTGCAAACGGGCGTCTAA 58.977 45.000 12.39 0.00 36.28 2.10
4167 4337 1.022735 TTTGCAAACGGGCGTCTAAA 58.977 45.000 8.05 0.00 36.28 1.85
4168 4338 0.589223 TTGCAAACGGGCGTCTAAAG 59.411 50.000 0.00 0.00 36.28 1.85
4169 4339 0.533308 TGCAAACGGGCGTCTAAAGT 60.533 50.000 0.00 0.00 36.28 2.66
4170 4340 0.165295 GCAAACGGGCGTCTAAAGTC 59.835 55.000 0.00 0.00 0.00 3.01
4171 4341 0.794473 CAAACGGGCGTCTAAAGTCC 59.206 55.000 0.00 0.00 0.00 3.85
4172 4342 0.668401 AAACGGGCGTCTAAAGTCCG 60.668 55.000 7.74 7.74 45.42 4.79
4173 4343 2.884207 CGGGCGTCTAAAGTCCGC 60.884 66.667 0.00 0.00 46.28 5.54
4176 4346 4.272100 GCGTCTAAAGTCCGCCAA 57.728 55.556 0.00 0.00 41.50 4.52
4177 4347 2.079049 GCGTCTAAAGTCCGCCAAG 58.921 57.895 0.00 0.00 41.50 3.61
4178 4348 1.967597 GCGTCTAAAGTCCGCCAAGC 61.968 60.000 0.00 0.00 41.50 4.01
4179 4349 0.389948 CGTCTAAAGTCCGCCAAGCT 60.390 55.000 0.00 0.00 0.00 3.74
4180 4350 1.079503 GTCTAAAGTCCGCCAAGCTG 58.920 55.000 0.00 0.00 0.00 4.24
4181 4351 0.973632 TCTAAAGTCCGCCAAGCTGA 59.026 50.000 0.00 0.00 0.00 4.26
4182 4352 1.066858 TCTAAAGTCCGCCAAGCTGAG 60.067 52.381 0.00 0.00 0.00 3.35
4183 4353 0.673644 TAAAGTCCGCCAAGCTGAGC 60.674 55.000 0.00 0.00 0.00 4.26
4184 4354 3.909086 AAGTCCGCCAAGCTGAGCC 62.909 63.158 0.00 0.00 0.00 4.70
4191 4361 4.809496 CAAGCTGAGCCGGCCCAT 62.809 66.667 26.15 3.93 36.20 4.00
4192 4362 3.089874 AAGCTGAGCCGGCCCATA 61.090 61.111 26.15 6.04 36.20 2.74
4193 4363 2.455565 AAGCTGAGCCGGCCCATAT 61.456 57.895 26.15 5.94 36.20 1.78
4194 4364 2.670934 GCTGAGCCGGCCCATATG 60.671 66.667 26.15 7.13 0.00 1.78
4195 4365 2.670934 CTGAGCCGGCCCATATGC 60.671 66.667 26.15 4.50 0.00 3.14
4196 4366 3.170672 TGAGCCGGCCCATATGCT 61.171 61.111 26.15 0.00 36.62 3.79
4197 4367 2.113986 GAGCCGGCCCATATGCTT 59.886 61.111 26.15 0.00 33.41 3.91
4198 4368 2.203394 AGCCGGCCCATATGCTTG 60.203 61.111 26.15 0.00 0.00 4.01
4199 4369 2.519302 GCCGGCCCATATGCTTGT 60.519 61.111 18.11 0.00 0.00 3.16
4200 4370 2.127232 GCCGGCCCATATGCTTGTT 61.127 57.895 18.11 0.00 0.00 2.83
4201 4371 0.821711 GCCGGCCCATATGCTTGTTA 60.822 55.000 18.11 0.00 0.00 2.41
4202 4372 1.909700 CCGGCCCATATGCTTGTTAT 58.090 50.000 0.00 0.00 0.00 1.89
4203 4373 2.238521 CCGGCCCATATGCTTGTTATT 58.761 47.619 0.00 0.00 0.00 1.40
4204 4374 2.627699 CCGGCCCATATGCTTGTTATTT 59.372 45.455 0.00 0.00 0.00 1.40
4205 4375 3.305335 CCGGCCCATATGCTTGTTATTTC 60.305 47.826 0.00 0.00 0.00 2.17
4206 4376 3.569701 CGGCCCATATGCTTGTTATTTCT 59.430 43.478 0.00 0.00 0.00 2.52
4207 4377 4.037923 CGGCCCATATGCTTGTTATTTCTT 59.962 41.667 0.00 0.00 0.00 2.52
4208 4378 5.532557 GGCCCATATGCTTGTTATTTCTTC 58.467 41.667 0.00 0.00 0.00 2.87
4209 4379 5.302823 GGCCCATATGCTTGTTATTTCTTCT 59.697 40.000 0.00 0.00 0.00 2.85
4210 4380 6.490040 GGCCCATATGCTTGTTATTTCTTCTA 59.510 38.462 0.00 0.00 0.00 2.10
4211 4381 7.177392 GGCCCATATGCTTGTTATTTCTTCTAT 59.823 37.037 0.00 0.00 0.00 1.98
4212 4382 8.579863 GCCCATATGCTTGTTATTTCTTCTATT 58.420 33.333 0.00 0.00 0.00 1.73
4224 4394 9.865321 GTTATTTCTTCTATTTTAAACACCCCC 57.135 33.333 0.00 0.00 0.00 5.40
4225 4395 9.831682 TTATTTCTTCTATTTTAAACACCCCCT 57.168 29.630 0.00 0.00 0.00 4.79
4227 4397 9.831682 ATTTCTTCTATTTTAAACACCCCCTAA 57.168 29.630 0.00 0.00 0.00 2.69
4228 4398 9.657728 TTTCTTCTATTTTAAACACCCCCTAAA 57.342 29.630 0.00 0.00 0.00 1.85
4229 4399 9.657728 TTCTTCTATTTTAAACACCCCCTAAAA 57.342 29.630 0.00 0.00 0.00 1.52
4230 4400 9.831682 TCTTCTATTTTAAACACCCCCTAAAAT 57.168 29.630 0.00 0.00 38.29 1.82
4233 4403 9.703677 TCTATTTTAAACACCCCCTAAAATAGG 57.296 33.333 21.70 11.36 45.32 2.57
4234 4404 9.483489 CTATTTTAAACACCCCCTAAAATAGGT 57.517 33.333 17.79 0.00 43.68 3.08
4238 4408 3.012934 CACCCCCTAAAATAGGTGTGG 57.987 52.381 12.22 8.13 44.73 4.17
4239 4409 1.927371 ACCCCCTAAAATAGGTGTGGG 59.073 52.381 12.25 12.25 45.42 4.61
4240 4410 1.411074 CCCCCTAAAATAGGTGTGGGC 60.411 57.143 2.93 0.00 44.73 5.36
4241 4411 1.675552 CCCTAAAATAGGTGTGGGCG 58.324 55.000 2.93 0.00 44.73 6.13
4242 4412 1.210967 CCCTAAAATAGGTGTGGGCGA 59.789 52.381 2.93 0.00 44.73 5.54
4243 4413 2.158667 CCCTAAAATAGGTGTGGGCGAT 60.159 50.000 2.93 0.00 44.73 4.58
4244 4414 3.071892 CCCTAAAATAGGTGTGGGCGATA 59.928 47.826 2.93 0.00 44.73 2.92
4245 4415 4.263331 CCCTAAAATAGGTGTGGGCGATAT 60.263 45.833 2.93 0.00 44.73 1.63
4246 4416 4.695455 CCTAAAATAGGTGTGGGCGATATG 59.305 45.833 0.00 0.00 41.18 1.78
4247 4417 4.431416 AAAATAGGTGTGGGCGATATGA 57.569 40.909 0.00 0.00 0.00 2.15
4248 4418 4.431416 AAATAGGTGTGGGCGATATGAA 57.569 40.909 0.00 0.00 0.00 2.57
4249 4419 4.640771 AATAGGTGTGGGCGATATGAAT 57.359 40.909 0.00 0.00 0.00 2.57
4250 4420 2.550830 AGGTGTGGGCGATATGAATC 57.449 50.000 0.00 0.00 0.00 2.52
4265 4435 7.264373 GATATGAATCGAATTTGGAACACCT 57.736 36.000 0.00 0.00 39.29 4.00
4266 4436 5.982890 ATGAATCGAATTTGGAACACCTT 57.017 34.783 0.00 0.00 39.29 3.50
4267 4437 5.782893 TGAATCGAATTTGGAACACCTTT 57.217 34.783 0.00 0.00 39.29 3.11
4268 4438 6.155475 TGAATCGAATTTGGAACACCTTTT 57.845 33.333 0.00 0.00 39.29 2.27
4269 4439 6.578023 TGAATCGAATTTGGAACACCTTTTT 58.422 32.000 0.00 0.00 39.29 1.94
4292 4462 6.466885 TTTTTAGGGTTCGAATTTGGAACA 57.533 33.333 21.05 3.47 44.29 3.18
4293 4463 5.441709 TTTAGGGTTCGAATTTGGAACAC 57.558 39.130 21.05 18.75 45.86 3.32
4294 4464 2.235891 AGGGTTCGAATTTGGAACACC 58.764 47.619 19.17 17.76 46.51 4.16
4295 4465 2.158519 AGGGTTCGAATTTGGAACACCT 60.159 45.455 19.17 19.20 46.51 4.00
4296 4466 2.030274 GGGTTCGAATTTGGAACACCTG 60.030 50.000 21.05 0.00 44.29 4.00
4297 4467 2.621526 GGTTCGAATTTGGAACACCTGT 59.378 45.455 21.05 0.00 44.29 4.00
4298 4468 3.550030 GGTTCGAATTTGGAACACCTGTG 60.550 47.826 21.05 0.00 44.29 3.66
4309 4479 2.799126 ACACCTGTGTTCCAAGACAA 57.201 45.000 0.00 0.00 41.83 3.18
4310 4480 2.365582 ACACCTGTGTTCCAAGACAAC 58.634 47.619 0.00 0.00 41.83 3.32
4311 4481 2.290641 ACACCTGTGTTCCAAGACAACA 60.291 45.455 0.00 0.00 41.83 3.33
4312 4482 2.355756 CACCTGTGTTCCAAGACAACAG 59.644 50.000 0.00 0.00 34.40 3.16
4313 4483 1.334869 CCTGTGTTCCAAGACAACAGC 59.665 52.381 0.00 0.00 34.40 4.40
4314 4484 1.003545 CTGTGTTCCAAGACAACAGCG 60.004 52.381 0.00 0.00 34.40 5.18
4315 4485 0.307760 GTGTTCCAAGACAACAGCGG 59.692 55.000 0.00 0.00 34.40 5.52
4316 4486 0.107410 TGTTCCAAGACAACAGCGGT 60.107 50.000 0.00 0.00 30.16 5.68
4317 4487 1.139256 TGTTCCAAGACAACAGCGGTA 59.861 47.619 0.00 0.00 30.16 4.02
4318 4488 2.215196 GTTCCAAGACAACAGCGGTAA 58.785 47.619 0.00 0.00 0.00 2.85
4319 4489 1.873698 TCCAAGACAACAGCGGTAAC 58.126 50.000 0.00 0.00 0.00 2.50
4320 4490 0.872388 CCAAGACAACAGCGGTAACC 59.128 55.000 0.00 0.00 0.00 2.85
4321 4491 1.588674 CAAGACAACAGCGGTAACCA 58.411 50.000 0.00 0.00 0.00 3.67
4322 4492 1.944024 CAAGACAACAGCGGTAACCAA 59.056 47.619 0.00 0.00 0.00 3.67
4323 4493 2.552315 CAAGACAACAGCGGTAACCAAT 59.448 45.455 0.00 0.00 0.00 3.16
4324 4494 3.688694 AGACAACAGCGGTAACCAATA 57.311 42.857 0.00 0.00 0.00 1.90
4325 4495 3.596214 AGACAACAGCGGTAACCAATAG 58.404 45.455 0.00 0.00 0.00 1.73
4640 4810 8.718102 TCTTATTACCTTTCTCGATTTTCCAG 57.282 34.615 0.00 0.00 0.00 3.86
4641 4811 8.319146 TCTTATTACCTTTCTCGATTTTCCAGT 58.681 33.333 0.00 0.00 0.00 4.00
4642 4812 8.857694 TTATTACCTTTCTCGATTTTCCAGTT 57.142 30.769 0.00 0.00 0.00 3.16
4643 4813 6.796705 TTACCTTTCTCGATTTTCCAGTTC 57.203 37.500 0.00 0.00 0.00 3.01
4644 4814 3.746492 ACCTTTCTCGATTTTCCAGTTCG 59.254 43.478 0.00 0.00 0.00 3.95
4645 4815 3.424962 CCTTTCTCGATTTTCCAGTTCGC 60.425 47.826 0.00 0.00 33.08 4.70
4646 4816 2.743636 TCTCGATTTTCCAGTTCGCT 57.256 45.000 0.00 0.00 33.08 4.93
4647 4817 2.337583 TCTCGATTTTCCAGTTCGCTG 58.662 47.619 0.00 0.00 44.59 5.18
4648 4818 2.069273 CTCGATTTTCCAGTTCGCTGT 58.931 47.619 0.00 0.00 43.51 4.40
4649 4819 2.480419 CTCGATTTTCCAGTTCGCTGTT 59.520 45.455 0.00 0.00 43.51 3.16
4650 4820 2.478894 TCGATTTTCCAGTTCGCTGTTC 59.521 45.455 0.00 0.00 43.51 3.18
4651 4821 2.223144 CGATTTTCCAGTTCGCTGTTCA 59.777 45.455 0.00 0.00 43.51 3.18
4652 4822 3.665323 CGATTTTCCAGTTCGCTGTTCAG 60.665 47.826 0.00 0.00 43.51 3.02
4653 4823 2.325583 TTTCCAGTTCGCTGTTCAGT 57.674 45.000 1.78 0.00 43.51 3.41
4654 4824 2.325583 TTCCAGTTCGCTGTTCAGTT 57.674 45.000 1.78 0.00 43.51 3.16
4655 4825 2.325583 TCCAGTTCGCTGTTCAGTTT 57.674 45.000 1.78 0.00 43.51 2.66
4656 4826 2.210116 TCCAGTTCGCTGTTCAGTTTC 58.790 47.619 1.78 0.00 43.51 2.78
4657 4827 1.264288 CCAGTTCGCTGTTCAGTTTCC 59.736 52.381 1.78 0.00 43.51 3.13
4658 4828 1.264288 CAGTTCGCTGTTCAGTTTCCC 59.736 52.381 1.78 0.00 40.26 3.97
4659 4829 0.591659 GTTCGCTGTTCAGTTTCCCC 59.408 55.000 1.78 0.00 0.00 4.81
4660 4830 0.181587 TTCGCTGTTCAGTTTCCCCA 59.818 50.000 1.78 0.00 0.00 4.96
4661 4831 0.400213 TCGCTGTTCAGTTTCCCCAT 59.600 50.000 1.78 0.00 0.00 4.00
4662 4832 0.523072 CGCTGTTCAGTTTCCCCATG 59.477 55.000 1.78 0.00 0.00 3.66
4663 4833 1.620822 GCTGTTCAGTTTCCCCATGT 58.379 50.000 1.78 0.00 0.00 3.21
4664 4834 1.963515 GCTGTTCAGTTTCCCCATGTT 59.036 47.619 1.78 0.00 0.00 2.71
4665 4835 2.365293 GCTGTTCAGTTTCCCCATGTTT 59.635 45.455 1.78 0.00 0.00 2.83
4666 4836 3.572255 GCTGTTCAGTTTCCCCATGTTTA 59.428 43.478 1.78 0.00 0.00 2.01
4667 4837 4.220602 GCTGTTCAGTTTCCCCATGTTTAT 59.779 41.667 1.78 0.00 0.00 1.40
4668 4838 5.417580 GCTGTTCAGTTTCCCCATGTTTATA 59.582 40.000 1.78 0.00 0.00 0.98
4669 4839 6.096846 GCTGTTCAGTTTCCCCATGTTTATAT 59.903 38.462 1.78 0.00 0.00 0.86
4670 4840 7.363793 GCTGTTCAGTTTCCCCATGTTTATATT 60.364 37.037 1.78 0.00 0.00 1.28
4671 4841 8.062065 TGTTCAGTTTCCCCATGTTTATATTC 57.938 34.615 0.00 0.00 0.00 1.75
4672 4842 6.935741 TCAGTTTCCCCATGTTTATATTCG 57.064 37.500 0.00 0.00 0.00 3.34
4673 4843 6.419791 TCAGTTTCCCCATGTTTATATTCGT 58.580 36.000 0.00 0.00 0.00 3.85
4674 4844 6.887545 TCAGTTTCCCCATGTTTATATTCGTT 59.112 34.615 0.00 0.00 0.00 3.85
4675 4845 7.394923 TCAGTTTCCCCATGTTTATATTCGTTT 59.605 33.333 0.00 0.00 0.00 3.60
4676 4846 8.032451 CAGTTTCCCCATGTTTATATTCGTTTT 58.968 33.333 0.00 0.00 0.00 2.43
4677 4847 8.590204 AGTTTCCCCATGTTTATATTCGTTTTT 58.410 29.630 0.00 0.00 0.00 1.94
4742 4912 7.872113 TTTTTGTTTTCCTAAATGCACCATT 57.128 28.000 0.00 0.00 35.39 3.16
4743 4913 7.872113 TTTTGTTTTCCTAAATGCACCATTT 57.128 28.000 8.11 8.11 44.74 2.32
4744 4914 7.872113 TTTGTTTTCCTAAATGCACCATTTT 57.128 28.000 8.30 0.00 40.60 1.82
4745 4915 7.872113 TTGTTTTCCTAAATGCACCATTTTT 57.128 28.000 8.30 0.00 40.60 1.94
4790 4960 6.926280 TTTCAAATTCGATGATGTTTTCCG 57.074 33.333 0.00 0.00 0.00 4.30
4791 4961 5.871465 TCAAATTCGATGATGTTTTCCGA 57.129 34.783 0.00 0.00 0.00 4.55
4792 4962 6.247727 TCAAATTCGATGATGTTTTCCGAA 57.752 33.333 0.00 0.00 42.27 4.30
4794 4964 7.980062 TCAAATTCGATGATGTTTTCCGAATA 58.020 30.769 0.00 0.00 45.48 1.75
4795 4965 8.454894 TCAAATTCGATGATGTTTTCCGAATAA 58.545 29.630 0.00 0.00 45.48 1.40
4796 4966 9.236691 CAAATTCGATGATGTTTTCCGAATAAT 57.763 29.630 0.00 0.00 45.48 1.28
4880 5050 7.543359 TGAACCTTTTCAAATTGGATGATCT 57.457 32.000 0.00 0.00 38.87 2.75
4881 5051 7.965718 TGAACCTTTTCAAATTGGATGATCTT 58.034 30.769 0.00 0.00 38.87 2.40
4882 5052 8.431222 TGAACCTTTTCAAATTGGATGATCTTT 58.569 29.630 0.00 0.00 38.87 2.52
4883 5053 9.276590 GAACCTTTTCAAATTGGATGATCTTTT 57.723 29.630 0.00 0.00 0.00 2.27
4884 5054 8.837788 ACCTTTTCAAATTGGATGATCTTTTC 57.162 30.769 0.00 0.00 0.00 2.29
4885 5055 8.654094 ACCTTTTCAAATTGGATGATCTTTTCT 58.346 29.630 0.00 0.00 0.00 2.52
4886 5056 9.498176 CCTTTTCAAATTGGATGATCTTTTCTT 57.502 29.630 0.00 0.00 0.00 2.52
4969 5139 8.839310 TTTGAACTTTTCTTCAAAACCATGAA 57.161 26.923 0.00 0.00 43.80 2.57
4970 5140 7.826260 TGAACTTTTCTTCAAAACCATGAAC 57.174 32.000 0.00 0.00 35.55 3.18
4971 5141 7.382110 TGAACTTTTCTTCAAAACCATGAACA 58.618 30.769 0.00 0.00 35.55 3.18
4972 5142 8.040132 TGAACTTTTCTTCAAAACCATGAACAT 58.960 29.630 0.00 0.00 35.55 2.71
4973 5143 8.791327 AACTTTTCTTCAAAACCATGAACATT 57.209 26.923 0.00 0.00 35.55 2.71
4974 5144 8.791327 ACTTTTCTTCAAAACCATGAACATTT 57.209 26.923 0.00 0.00 35.55 2.32
4975 5145 9.230122 ACTTTTCTTCAAAACCATGAACATTTT 57.770 25.926 0.00 0.00 35.55 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.323302 TGTCAATAGCGTGGCCAAGA 59.677 50.000 23.82 2.18 0.00 3.02
99 100 9.927668 CCCACAATTGATTAAGTTTTACTCAAT 57.072 29.630 13.59 7.97 37.98 2.57
100 101 7.870445 GCCCACAATTGATTAAGTTTTACTCAA 59.130 33.333 13.59 4.72 0.00 3.02
106 108 6.767456 TCATGCCCACAATTGATTAAGTTTT 58.233 32.000 13.59 0.00 0.00 2.43
111 113 4.467082 AGCTTCATGCCCACAATTGATTAA 59.533 37.500 13.59 0.00 44.23 1.40
153 155 3.838565 TGCCAAAATCAACTTGGTAGGA 58.161 40.909 3.70 0.00 44.46 2.94
163 166 1.339610 CGGACCAGTTGCCAAAATCAA 59.660 47.619 0.00 0.00 0.00 2.57
168 171 0.817634 CTGACGGACCAGTTGCCAAA 60.818 55.000 0.00 0.00 0.00 3.28
182 185 5.409643 AAAGAAAATGTGTGAGACTGACG 57.590 39.130 0.00 0.00 0.00 4.35
251 256 6.375455 CCTGTACTTGGTTATTTCTTGCTGAT 59.625 38.462 0.00 0.00 0.00 2.90
311 317 3.202097 TGACTTGCTTGTCGAAATGTCA 58.798 40.909 0.00 0.00 39.64 3.58
421 427 0.035439 AAATCGGTTGCGATGGAGGT 60.035 50.000 0.00 0.00 0.00 3.85
508 522 1.710816 AATCCGGTGCAAAAAGGGAA 58.289 45.000 0.00 0.00 0.00 3.97
554 572 3.005261 AGTGGTTTTGATTTGCATGCGTA 59.995 39.130 14.09 3.31 0.00 4.42
560 578 2.685388 TCGACAGTGGTTTTGATTTGCA 59.315 40.909 0.00 0.00 0.00 4.08
564 582 4.093408 CGATCATCGACAGTGGTTTTGATT 59.907 41.667 0.00 0.00 43.74 2.57
565 583 3.618594 CGATCATCGACAGTGGTTTTGAT 59.381 43.478 0.00 0.00 43.74 2.57
566 584 2.993220 CGATCATCGACAGTGGTTTTGA 59.007 45.455 0.00 0.00 43.74 2.69
567 585 2.993220 TCGATCATCGACAGTGGTTTTG 59.007 45.455 5.39 0.00 44.82 2.44
591 612 5.212532 TGTTTTTGGAGTAGCATGCAAAT 57.787 34.783 21.98 4.11 39.75 2.32
624 649 2.496070 GCCATGCATGCATATCCATCTT 59.504 45.455 31.73 5.79 34.91 2.40
810 847 1.303091 ACCACCGCGCCATTAGTTTC 61.303 55.000 0.00 0.00 0.00 2.78
811 848 1.302993 ACCACCGCGCCATTAGTTT 60.303 52.632 0.00 0.00 0.00 2.66
903 946 1.407437 GGATGCAGGACGGACTGAATT 60.407 52.381 12.11 0.00 36.86 2.17
904 947 0.179000 GGATGCAGGACGGACTGAAT 59.821 55.000 12.11 7.24 39.48 2.57
905 948 0.904865 AGGATGCAGGACGGACTGAA 60.905 55.000 12.11 2.40 40.97 3.02
906 949 1.305297 AGGATGCAGGACGGACTGA 60.305 57.895 12.11 0.00 40.97 3.41
960 1003 3.187700 CCGCTCTATATATGGAAACGGC 58.812 50.000 20.21 10.94 32.98 5.68
1035 1082 1.216710 GGAGCAGTGAAGACCGGAG 59.783 63.158 9.46 0.00 0.00 4.63
1053 1100 2.765807 AGGGTCGCCATGAGGAGG 60.766 66.667 0.00 0.00 36.89 4.30
1073 1120 4.056125 CCTGGACGACGAGCAGCA 62.056 66.667 0.00 0.00 0.00 4.41
1105 1152 3.863424 CGTACATTGAAATCGTAGTGCCT 59.137 43.478 0.00 0.00 0.00 4.75
1144 1191 1.146930 GCATGCACTAGCTAGGCCA 59.853 57.895 24.35 19.30 42.74 5.36
1145 1192 1.146930 TGCATGCACTAGCTAGGCC 59.853 57.895 24.35 14.56 42.74 5.19
1146 1193 1.493950 CGTGCATGCACTAGCTAGGC 61.494 60.000 39.46 22.35 44.16 3.93
1147 1194 1.493950 GCGTGCATGCACTAGCTAGG 61.494 60.000 39.46 26.39 44.16 3.02
1148 1195 0.807275 TGCGTGCATGCACTAGCTAG 60.807 55.000 39.46 27.01 44.16 3.42
1149 1196 1.217779 TGCGTGCATGCACTAGCTA 59.782 52.632 39.46 25.41 44.16 3.32
1174 1221 1.073763 ACCACCTGCAGATAAGCACAA 59.926 47.619 17.39 0.00 40.11 3.33
1265 1321 2.749044 ATGCTCTTGGTGCCGCAG 60.749 61.111 0.00 0.00 35.66 5.18
1407 1463 2.032680 GCGTAAAGCCAGGGAATGTA 57.967 50.000 0.00 0.00 40.81 2.29
1433 1489 5.587443 ACGGCGGAATAAACTAAAGCTAAAT 59.413 36.000 13.24 0.00 0.00 1.40
1442 1498 0.528249 GGCGACGGCGGAATAAACTA 60.528 55.000 15.06 0.00 41.24 2.24
1793 1849 0.667453 TTTTCAATCGCAGCAGCACA 59.333 45.000 0.82 0.00 42.27 4.57
1794 1850 1.055338 GTTTTCAATCGCAGCAGCAC 58.945 50.000 0.82 0.00 42.27 4.40
1795 1851 0.953727 AGTTTTCAATCGCAGCAGCA 59.046 45.000 0.82 0.00 42.27 4.41
1823 1879 6.688073 TCTAAGTCCTCCAAGTTGATTTCT 57.312 37.500 3.87 0.00 0.00 2.52
1826 1882 6.441088 AGTTCTAAGTCCTCCAAGTTGATT 57.559 37.500 3.87 0.00 0.00 2.57
1828 1884 6.989155 TTAGTTCTAAGTCCTCCAAGTTGA 57.011 37.500 3.87 0.00 0.00 3.18
1829 1885 8.097662 AGATTTAGTTCTAAGTCCTCCAAGTTG 58.902 37.037 10.13 0.00 0.00 3.16
1830 1886 8.208575 AGATTTAGTTCTAAGTCCTCCAAGTT 57.791 34.615 10.13 0.00 0.00 2.66
1831 1887 7.800300 AGATTTAGTTCTAAGTCCTCCAAGT 57.200 36.000 10.13 0.00 0.00 3.16
1835 1891 9.047371 GCAATTAGATTTAGTTCTAAGTCCTCC 57.953 37.037 10.13 0.00 40.53 4.30
1836 1892 8.756864 CGCAATTAGATTTAGTTCTAAGTCCTC 58.243 37.037 10.13 0.98 40.53 3.71
1842 1907 8.175069 CACAAGCGCAATTAGATTTAGTTCTAA 58.825 33.333 11.47 0.00 41.23 2.10
1845 1910 6.542852 TCACAAGCGCAATTAGATTTAGTTC 58.457 36.000 11.47 0.00 0.00 3.01
1854 1919 5.052829 CGATCAAAATCACAAGCGCAATTAG 60.053 40.000 11.47 0.00 31.76 1.73
1857 1922 3.119884 TCGATCAAAATCACAAGCGCAAT 60.120 39.130 11.47 0.00 31.76 3.56
1889 1954 2.564062 CACCATCCAAGACAAAAGCCAT 59.436 45.455 0.00 0.00 0.00 4.40
1936 2001 0.249120 CCGTGTTGACTATGGCCTCA 59.751 55.000 3.32 0.00 0.00 3.86
2059 2124 4.923893 ACAAGTTAAAACGCTGGGTAAAC 58.076 39.130 0.00 4.00 0.00 2.01
2085 2150 5.527582 GTGCACGGTATCATTTTATTCTCCT 59.472 40.000 0.00 0.00 0.00 3.69
2086 2151 5.295787 TGTGCACGGTATCATTTTATTCTCC 59.704 40.000 13.13 0.00 0.00 3.71
2089 2154 6.724263 TGATGTGCACGGTATCATTTTATTC 58.276 36.000 13.13 0.00 0.00 1.75
2090 2155 6.318648 ACTGATGTGCACGGTATCATTTTATT 59.681 34.615 16.18 0.00 31.11 1.40
2092 2157 5.064579 CACTGATGTGCACGGTATCATTTTA 59.935 40.000 16.18 0.00 37.38 1.52
2093 2158 4.009675 ACTGATGTGCACGGTATCATTTT 58.990 39.130 16.18 4.49 31.11 1.82
2094 2159 3.374988 CACTGATGTGCACGGTATCATTT 59.625 43.478 16.18 6.48 37.38 2.32
2097 2162 1.548269 TCACTGATGTGCACGGTATCA 59.452 47.619 13.13 14.43 43.49 2.15
2098 2163 2.293677 TCACTGATGTGCACGGTATC 57.706 50.000 13.13 10.38 43.49 2.24
2102 2167 1.022982 AGCATCACTGATGTGCACGG 61.023 55.000 18.36 4.94 41.60 4.94
2104 2169 3.426695 GGTTTAGCATCACTGATGTGCAC 60.427 47.826 18.36 10.75 41.60 4.57
2105 2170 2.749076 GGTTTAGCATCACTGATGTGCA 59.251 45.455 18.36 3.72 41.60 4.57
2106 2171 3.012518 AGGTTTAGCATCACTGATGTGC 58.987 45.455 18.36 8.44 41.60 4.57
2109 2174 3.011818 TGCAGGTTTAGCATCACTGATG 58.988 45.455 13.90 13.90 42.37 3.07
2110 2175 3.054875 TCTGCAGGTTTAGCATCACTGAT 60.055 43.478 15.13 0.00 41.82 2.90
2111 2176 2.302733 TCTGCAGGTTTAGCATCACTGA 59.697 45.455 15.13 0.00 41.82 3.41
2112 2177 2.703416 TCTGCAGGTTTAGCATCACTG 58.297 47.619 15.13 0.00 41.82 3.66
2113 2178 3.423539 TTCTGCAGGTTTAGCATCACT 57.576 42.857 15.13 0.00 41.82 3.41
2114 2179 4.708726 ATTTCTGCAGGTTTAGCATCAC 57.291 40.909 15.13 0.00 41.82 3.06
2115 2180 5.010922 ACAAATTTCTGCAGGTTTAGCATCA 59.989 36.000 15.13 0.00 41.82 3.07
2116 2181 5.473039 ACAAATTTCTGCAGGTTTAGCATC 58.527 37.500 15.13 0.00 41.82 3.91
2121 2186 4.808364 GCACAACAAATTTCTGCAGGTTTA 59.192 37.500 15.13 0.00 0.00 2.01
2122 2187 3.622612 GCACAACAAATTTCTGCAGGTTT 59.377 39.130 15.13 10.04 0.00 3.27
2123 2188 3.197265 GCACAACAAATTTCTGCAGGTT 58.803 40.909 15.13 5.90 0.00 3.50
2124 2189 2.168106 TGCACAACAAATTTCTGCAGGT 59.832 40.909 15.13 0.00 32.97 4.00
2138 2203 2.605580 GCAGCTCTACCTTTTGCACAAC 60.606 50.000 0.00 0.00 34.99 3.32
2139 2204 1.608590 GCAGCTCTACCTTTTGCACAA 59.391 47.619 0.00 0.00 34.99 3.33
2149 2214 4.367450 CTTTGTCTATCAGCAGCTCTACC 58.633 47.826 0.00 0.00 0.00 3.18
2159 2224 4.756642 TCTGCAAACACCTTTGTCTATCAG 59.243 41.667 0.00 0.00 39.30 2.90
2161 2226 5.689383 TTCTGCAAACACCTTTGTCTATC 57.311 39.130 0.00 0.00 39.30 2.08
2162 2227 5.594317 ACTTTCTGCAAACACCTTTGTCTAT 59.406 36.000 0.00 0.00 39.30 1.98
2163 2228 4.947388 ACTTTCTGCAAACACCTTTGTCTA 59.053 37.500 0.00 0.00 39.30 2.59
2164 2229 3.763897 ACTTTCTGCAAACACCTTTGTCT 59.236 39.130 0.00 0.00 39.30 3.41
2171 2270 2.348362 GCACAAACTTTCTGCAAACACC 59.652 45.455 0.00 0.00 0.00 4.16
2183 2282 3.806625 ATGCACAGAAAGCACAAACTT 57.193 38.095 0.00 0.00 45.95 2.66
2195 2301 2.694628 ACAAGGCTGAAAAATGCACAGA 59.305 40.909 5.51 0.00 34.07 3.41
2197 2303 3.636300 AGTACAAGGCTGAAAAATGCACA 59.364 39.130 0.00 0.00 0.00 4.57
2198 2304 3.983344 CAGTACAAGGCTGAAAAATGCAC 59.017 43.478 0.00 0.00 36.12 4.57
2209 2315 3.368116 GGTGATTACGTCAGTACAAGGCT 60.368 47.826 0.00 0.00 37.56 4.58
2233 2339 0.173708 CCTCCTGGCGTACTTGTCTC 59.826 60.000 0.00 0.00 0.00 3.36
2253 2359 6.063404 ACTTTTGGTGATTTTGATTGGCAAT 58.937 32.000 13.54 13.54 36.15 3.56
2282 2392 5.469084 GGAAGTAACACCGAAATCTTGTTCT 59.531 40.000 0.00 0.00 35.18 3.01
2308 2418 2.235016 CACCATTCCCTTTCCGTTTCA 58.765 47.619 0.00 0.00 0.00 2.69
2332 2442 5.531634 ACATTGCAATGACCTAAACAACTG 58.468 37.500 38.99 14.82 39.67 3.16
2445 2555 7.459219 GCGTAACTAATGTTTTGTTTATCACGC 60.459 37.037 12.80 12.80 37.59 5.34
2466 2576 1.541147 AGGTGTAGCGTAAGTGCGTAA 59.459 47.619 0.00 0.00 40.67 3.18
2682 2802 1.007038 GACGGTGAGCGTGTGGTTA 60.007 57.895 16.53 0.00 0.00 2.85
2786 2906 2.590092 GATAGGCCGGCTTGGTGT 59.410 61.111 28.56 6.85 41.21 4.16
2994 3114 3.550656 CGGAGCTTGGTCGTGAAC 58.449 61.111 0.00 0.00 0.00 3.18
3171 3294 2.760385 GCCGTAGAGGGGAGCACT 60.760 66.667 0.00 0.00 41.48 4.40
3183 3306 2.202878 GATTGCAGGAGCGCCGTA 60.203 61.111 2.29 0.00 46.23 4.02
3198 3321 2.610859 AGGCCGGTGAAGTGGGAT 60.611 61.111 1.90 0.00 0.00 3.85
3201 3324 2.358737 GTGAGGCCGGTGAAGTGG 60.359 66.667 1.90 0.00 0.00 4.00
3345 3468 1.298993 CTGCATCACCAGCTCCACT 59.701 57.895 0.00 0.00 0.00 4.00
3552 3675 5.949952 AGAATTATGTTTACCTGGGTTGTCC 59.050 40.000 0.00 0.00 0.00 4.02
3570 3693 6.752815 TGTCACGTATTGATTGCGTAGAATTA 59.247 34.615 0.00 0.00 36.32 1.40
3585 3715 3.138304 AGTGCATTGTGTGTCACGTATT 58.862 40.909 0.00 0.00 38.80 1.89
3643 3802 2.553602 CTGCACATACACACACAACCAT 59.446 45.455 0.00 0.00 0.00 3.55
3653 3818 2.985896 ACCATACACCTGCACATACAC 58.014 47.619 0.00 0.00 0.00 2.90
3699 3864 0.250858 TTCTCAGACCCCACGTCGTA 60.251 55.000 0.00 0.00 46.92 3.43
3808 3973 1.583404 CGCAAATTAAACATCAGCCGC 59.417 47.619 0.00 0.00 0.00 6.53
3883 4049 2.758009 TGAACGGGCTAAACACACTAC 58.242 47.619 0.00 0.00 0.00 2.73
3938 4107 8.517878 CAAAACATCTTCATCAGAAAGTGGTAT 58.482 33.333 0.00 0.00 34.16 2.73
3939 4108 7.719193 TCAAAACATCTTCATCAGAAAGTGGTA 59.281 33.333 0.00 0.00 34.16 3.25
3980 4150 5.180367 TCTCGTGCAATTTTTCACATCAA 57.820 34.783 0.00 0.00 33.03 2.57
3990 4160 9.950680 ATATTTCGATATTTTCTCGTGCAATTT 57.049 25.926 0.00 0.00 37.40 1.82
4033 4203 1.094785 CCGTGGGCTAACAGAAATGG 58.905 55.000 0.00 0.00 0.00 3.16
4083 4253 9.411801 CCACACATAGGCTTTATATATATAGCG 57.588 37.037 21.57 13.84 37.94 4.26
4091 4261 9.860650 TTAAACATCCACACATAGGCTTTATAT 57.139 29.630 0.00 0.00 0.00 0.86
4092 4262 9.116067 GTTAAACATCCACACATAGGCTTTATA 57.884 33.333 0.00 0.00 0.00 0.98
4093 4263 7.613801 TGTTAAACATCCACACATAGGCTTTAT 59.386 33.333 0.00 0.00 0.00 1.40
4094 4264 6.943146 TGTTAAACATCCACACATAGGCTTTA 59.057 34.615 0.00 0.00 0.00 1.85
4095 4265 5.772672 TGTTAAACATCCACACATAGGCTTT 59.227 36.000 0.00 0.00 0.00 3.51
4096 4266 5.321102 TGTTAAACATCCACACATAGGCTT 58.679 37.500 0.00 0.00 0.00 4.35
4097 4267 4.917385 TGTTAAACATCCACACATAGGCT 58.083 39.130 0.00 0.00 0.00 4.58
4098 4268 4.096382 CCTGTTAAACATCCACACATAGGC 59.904 45.833 0.00 0.00 0.00 3.93
4099 4269 4.096382 GCCTGTTAAACATCCACACATAGG 59.904 45.833 0.00 0.00 0.00 2.57
4100 4270 4.201812 CGCCTGTTAAACATCCACACATAG 60.202 45.833 0.00 0.00 0.00 2.23
4101 4271 3.687212 CGCCTGTTAAACATCCACACATA 59.313 43.478 0.00 0.00 0.00 2.29
4102 4272 2.487762 CGCCTGTTAAACATCCACACAT 59.512 45.455 0.00 0.00 0.00 3.21
4103 4273 1.876799 CGCCTGTTAAACATCCACACA 59.123 47.619 0.00 0.00 0.00 3.72
4104 4274 1.401018 GCGCCTGTTAAACATCCACAC 60.401 52.381 0.00 0.00 0.00 3.82
4105 4275 0.878416 GCGCCTGTTAAACATCCACA 59.122 50.000 0.00 0.00 0.00 4.17
4106 4276 1.165270 AGCGCCTGTTAAACATCCAC 58.835 50.000 2.29 0.00 0.00 4.02
4107 4277 1.904287 AAGCGCCTGTTAAACATCCA 58.096 45.000 2.29 0.00 0.00 3.41
4108 4278 2.595386 CAAAGCGCCTGTTAAACATCC 58.405 47.619 2.29 0.00 0.00 3.51
4109 4279 2.227865 TCCAAAGCGCCTGTTAAACATC 59.772 45.455 2.29 0.00 0.00 3.06
4110 4280 2.030274 GTCCAAAGCGCCTGTTAAACAT 60.030 45.455 2.29 0.00 0.00 2.71
4111 4281 1.335496 GTCCAAAGCGCCTGTTAAACA 59.665 47.619 2.29 0.00 0.00 2.83
4112 4282 1.662026 CGTCCAAAGCGCCTGTTAAAC 60.662 52.381 2.29 0.00 0.00 2.01
4113 4283 0.589223 CGTCCAAAGCGCCTGTTAAA 59.411 50.000 2.29 0.00 0.00 1.52
4114 4284 2.240230 CGTCCAAAGCGCCTGTTAA 58.760 52.632 2.29 0.00 0.00 2.01
4115 4285 3.960237 CGTCCAAAGCGCCTGTTA 58.040 55.556 2.29 0.00 0.00 2.41
4122 4292 2.047655 TACCAGGCGTCCAAAGCG 60.048 61.111 0.00 0.00 35.00 4.68
4123 4293 1.003718 ACTACCAGGCGTCCAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
4124 4294 0.034896 ACACTACCAGGCGTCCAAAG 59.965 55.000 0.00 0.00 0.00 2.77
4125 4295 0.250124 CACACTACCAGGCGTCCAAA 60.250 55.000 0.00 0.00 0.00 3.28
4126 4296 1.369692 CACACTACCAGGCGTCCAA 59.630 57.895 0.00 0.00 0.00 3.53
4127 4297 3.056458 CACACTACCAGGCGTCCA 58.944 61.111 0.00 0.00 0.00 4.02
4128 4298 2.434359 GCACACTACCAGGCGTCC 60.434 66.667 0.00 0.00 0.00 4.79
4129 4299 0.673644 AATGCACACTACCAGGCGTC 60.674 55.000 0.00 0.00 0.00 5.19
4130 4300 0.250727 AAATGCACACTACCAGGCGT 60.251 50.000 0.00 0.00 0.00 5.68
4131 4301 0.881118 AAAATGCACACTACCAGGCG 59.119 50.000 0.00 0.00 0.00 5.52
4132 4302 1.669795 GCAAAATGCACACTACCAGGC 60.670 52.381 0.00 0.00 44.26 4.85
4133 4303 2.352503 GCAAAATGCACACTACCAGG 57.647 50.000 0.00 0.00 44.26 4.45
4144 4314 1.885814 GACGCCCGTTTGCAAAATGC 61.886 55.000 14.67 15.02 45.29 3.56
4145 4315 0.318614 AGACGCCCGTTTGCAAAATG 60.319 50.000 14.67 9.52 0.00 2.32
4146 4316 1.240256 TAGACGCCCGTTTGCAAAAT 58.760 45.000 14.67 0.00 0.00 1.82
4147 4317 1.022735 TTAGACGCCCGTTTGCAAAA 58.977 45.000 14.67 0.00 0.00 2.44
4148 4318 1.002251 CTTTAGACGCCCGTTTGCAAA 60.002 47.619 8.05 8.05 0.00 3.68
4149 4319 0.589223 CTTTAGACGCCCGTTTGCAA 59.411 50.000 0.00 0.00 0.00 4.08
4150 4320 0.533308 ACTTTAGACGCCCGTTTGCA 60.533 50.000 0.00 0.00 0.00 4.08
4151 4321 0.165295 GACTTTAGACGCCCGTTTGC 59.835 55.000 0.00 0.00 0.00 3.68
4152 4322 0.794473 GGACTTTAGACGCCCGTTTG 59.206 55.000 0.00 0.00 0.00 2.93
4153 4323 0.668401 CGGACTTTAGACGCCCGTTT 60.668 55.000 0.00 0.00 35.83 3.60
4154 4324 1.080298 CGGACTTTAGACGCCCGTT 60.080 57.895 0.00 0.00 35.83 4.44
4155 4325 2.570181 CGGACTTTAGACGCCCGT 59.430 61.111 0.00 0.00 35.83 5.28
4156 4326 2.884207 GCGGACTTTAGACGCCCG 60.884 66.667 10.73 0.00 46.92 6.13
4160 4330 0.389948 AGCTTGGCGGACTTTAGACG 60.390 55.000 0.00 0.00 0.00 4.18
4161 4331 1.079503 CAGCTTGGCGGACTTTAGAC 58.920 55.000 0.00 0.00 0.00 2.59
4162 4332 0.973632 TCAGCTTGGCGGACTTTAGA 59.026 50.000 0.00 0.00 0.00 2.10
4163 4333 1.363744 CTCAGCTTGGCGGACTTTAG 58.636 55.000 0.00 0.00 0.00 1.85
4164 4334 0.673644 GCTCAGCTTGGCGGACTTTA 60.674 55.000 0.00 0.00 0.00 1.85
4165 4335 1.968540 GCTCAGCTTGGCGGACTTT 60.969 57.895 0.00 0.00 0.00 2.66
4166 4336 2.359230 GCTCAGCTTGGCGGACTT 60.359 61.111 0.00 0.00 0.00 3.01
4167 4337 4.400961 GGCTCAGCTTGGCGGACT 62.401 66.667 0.00 0.00 0.00 3.85
4174 4344 2.687418 ATATGGGCCGGCTCAGCTTG 62.687 60.000 35.67 0.00 0.00 4.01
4175 4345 2.455565 ATATGGGCCGGCTCAGCTT 61.456 57.895 35.67 21.14 0.00 3.74
4176 4346 2.851102 ATATGGGCCGGCTCAGCT 60.851 61.111 35.67 21.97 0.00 4.24
4177 4347 2.670934 CATATGGGCCGGCTCAGC 60.671 66.667 35.67 14.07 0.00 4.26
4178 4348 2.670934 GCATATGGGCCGGCTCAG 60.671 66.667 35.67 22.43 0.00 3.35
4179 4349 2.756042 AAGCATATGGGCCGGCTCA 61.756 57.895 35.14 35.14 35.11 4.26
4180 4350 2.113986 AAGCATATGGGCCGGCTC 59.886 61.111 28.56 25.91 35.11 4.70
4181 4351 2.203394 CAAGCATATGGGCCGGCT 60.203 61.111 28.56 9.55 38.45 5.52
4182 4352 0.821711 TAACAAGCATATGGGCCGGC 60.822 55.000 21.18 21.18 0.00 6.13
4183 4353 1.909700 ATAACAAGCATATGGGCCGG 58.090 50.000 4.56 0.00 0.00 6.13
4184 4354 3.569701 AGAAATAACAAGCATATGGGCCG 59.430 43.478 4.56 0.00 0.00 6.13
4185 4355 5.302823 AGAAGAAATAACAAGCATATGGGCC 59.697 40.000 4.56 0.00 0.00 5.80
4186 4356 6.396829 AGAAGAAATAACAAGCATATGGGC 57.603 37.500 4.56 0.00 0.00 5.36
4198 4368 9.865321 GGGGGTGTTTAAAATAGAAGAAATAAC 57.135 33.333 0.00 0.00 0.00 1.89
4199 4369 9.831682 AGGGGGTGTTTAAAATAGAAGAAATAA 57.168 29.630 0.00 0.00 0.00 1.40
4201 4371 9.831682 TTAGGGGGTGTTTAAAATAGAAGAAAT 57.168 29.630 0.00 0.00 0.00 2.17
4202 4372 9.657728 TTTAGGGGGTGTTTAAAATAGAAGAAA 57.342 29.630 0.00 0.00 0.00 2.52
4203 4373 9.657728 TTTTAGGGGGTGTTTAAAATAGAAGAA 57.342 29.630 0.00 0.00 0.00 2.52
4204 4374 9.831682 ATTTTAGGGGGTGTTTAAAATAGAAGA 57.168 29.630 0.00 0.00 36.03 2.87
4224 4394 5.547465 TCATATCGCCCACACCTATTTTAG 58.453 41.667 0.00 0.00 0.00 1.85
4225 4395 5.554437 TCATATCGCCCACACCTATTTTA 57.446 39.130 0.00 0.00 0.00 1.52
4226 4396 4.431416 TCATATCGCCCACACCTATTTT 57.569 40.909 0.00 0.00 0.00 1.82
4227 4397 4.431416 TTCATATCGCCCACACCTATTT 57.569 40.909 0.00 0.00 0.00 1.40
4228 4398 4.579869 GATTCATATCGCCCACACCTATT 58.420 43.478 0.00 0.00 0.00 1.73
4229 4399 3.368427 CGATTCATATCGCCCACACCTAT 60.368 47.826 0.00 0.00 46.15 2.57
4230 4400 2.029380 CGATTCATATCGCCCACACCTA 60.029 50.000 0.00 0.00 46.15 3.08
4231 4401 1.270305 CGATTCATATCGCCCACACCT 60.270 52.381 0.00 0.00 46.15 4.00
4232 4402 1.148310 CGATTCATATCGCCCACACC 58.852 55.000 0.00 0.00 46.15 4.16
4239 4409 9.319404 AGGTGTTCCAAATTCGATTCATATCGC 62.319 40.741 2.83 0.00 43.53 4.58
4240 4410 6.017934 AGGTGTTCCAAATTCGATTCATATCG 60.018 38.462 1.32 1.32 44.33 2.92
4241 4411 7.264373 AGGTGTTCCAAATTCGATTCATATC 57.736 36.000 0.00 0.00 35.89 1.63
4242 4412 7.645058 AAGGTGTTCCAAATTCGATTCATAT 57.355 32.000 0.00 0.00 35.89 1.78
4243 4413 7.461182 AAAGGTGTTCCAAATTCGATTCATA 57.539 32.000 0.00 0.00 35.89 2.15
4244 4414 5.982890 AAGGTGTTCCAAATTCGATTCAT 57.017 34.783 0.00 0.00 35.89 2.57
4245 4415 5.782893 AAAGGTGTTCCAAATTCGATTCA 57.217 34.783 0.00 0.00 35.89 2.57
4269 4439 6.274579 GTGTTCCAAATTCGAACCCTAAAAA 58.725 36.000 0.00 0.00 39.10 1.94
4270 4440 5.221283 GGTGTTCCAAATTCGAACCCTAAAA 60.221 40.000 0.00 0.00 39.10 1.52
4271 4441 4.278919 GGTGTTCCAAATTCGAACCCTAAA 59.721 41.667 0.00 0.00 39.10 1.85
4272 4442 3.822167 GGTGTTCCAAATTCGAACCCTAA 59.178 43.478 0.00 0.00 39.10 2.69
4273 4443 3.073356 AGGTGTTCCAAATTCGAACCCTA 59.927 43.478 17.50 2.09 38.27 3.53
4274 4444 2.158519 AGGTGTTCCAAATTCGAACCCT 60.159 45.455 0.00 14.37 39.10 4.34
4275 4445 2.030274 CAGGTGTTCCAAATTCGAACCC 60.030 50.000 0.00 12.97 39.10 4.11
4276 4446 2.621526 ACAGGTGTTCCAAATTCGAACC 59.378 45.455 0.00 0.00 39.10 3.62
4277 4447 3.066203 ACACAGGTGTTCCAAATTCGAAC 59.934 43.478 0.00 10.13 41.83 3.95
4278 4448 3.283751 ACACAGGTGTTCCAAATTCGAA 58.716 40.909 0.00 0.00 41.83 3.71
4279 4449 2.925724 ACACAGGTGTTCCAAATTCGA 58.074 42.857 0.00 0.00 41.83 3.71
4291 4461 2.355756 CTGTTGTCTTGGAACACAGGTG 59.644 50.000 0.00 0.00 39.29 4.00
4292 4462 2.643551 CTGTTGTCTTGGAACACAGGT 58.356 47.619 0.00 0.00 39.29 4.00
4293 4463 1.334869 GCTGTTGTCTTGGAACACAGG 59.665 52.381 0.00 0.00 39.29 4.00
4294 4464 1.003545 CGCTGTTGTCTTGGAACACAG 60.004 52.381 0.00 0.00 39.29 3.66
4295 4465 1.013596 CGCTGTTGTCTTGGAACACA 58.986 50.000 0.00 0.00 39.29 3.72
4296 4466 0.307760 CCGCTGTTGTCTTGGAACAC 59.692 55.000 0.00 0.00 39.29 3.32
4297 4467 0.107410 ACCGCTGTTGTCTTGGAACA 60.107 50.000 0.00 0.00 0.00 3.18
4298 4468 1.873698 TACCGCTGTTGTCTTGGAAC 58.126 50.000 0.00 0.00 0.00 3.62
4299 4469 2.215196 GTTACCGCTGTTGTCTTGGAA 58.785 47.619 0.00 0.00 0.00 3.53
4300 4470 1.541670 GGTTACCGCTGTTGTCTTGGA 60.542 52.381 0.00 0.00 0.00 3.53
4301 4471 0.872388 GGTTACCGCTGTTGTCTTGG 59.128 55.000 0.00 0.00 0.00 3.61
4302 4472 1.588674 TGGTTACCGCTGTTGTCTTG 58.411 50.000 0.00 0.00 0.00 3.02
4303 4473 2.335316 TTGGTTACCGCTGTTGTCTT 57.665 45.000 0.00 0.00 0.00 3.01
4304 4474 2.561478 ATTGGTTACCGCTGTTGTCT 57.439 45.000 0.00 0.00 0.00 3.41
4615 4785 8.319146 ACTGGAAAATCGAGAAAGGTAATAAGA 58.681 33.333 0.00 0.00 0.00 2.10
4616 4786 8.494016 ACTGGAAAATCGAGAAAGGTAATAAG 57.506 34.615 0.00 0.00 0.00 1.73
4617 4787 8.857694 AACTGGAAAATCGAGAAAGGTAATAA 57.142 30.769 0.00 0.00 0.00 1.40
4618 4788 7.277098 CGAACTGGAAAATCGAGAAAGGTAATA 59.723 37.037 0.00 0.00 38.82 0.98
4619 4789 6.092259 CGAACTGGAAAATCGAGAAAGGTAAT 59.908 38.462 0.00 0.00 38.82 1.89
4620 4790 5.407387 CGAACTGGAAAATCGAGAAAGGTAA 59.593 40.000 0.00 0.00 38.82 2.85
4621 4791 4.927425 CGAACTGGAAAATCGAGAAAGGTA 59.073 41.667 0.00 0.00 38.82 3.08
4622 4792 3.746492 CGAACTGGAAAATCGAGAAAGGT 59.254 43.478 0.00 0.00 38.82 3.50
4623 4793 3.424962 GCGAACTGGAAAATCGAGAAAGG 60.425 47.826 0.00 0.00 38.82 3.11
4624 4794 3.433615 AGCGAACTGGAAAATCGAGAAAG 59.566 43.478 0.00 0.00 38.82 2.62
4625 4795 3.186409 CAGCGAACTGGAAAATCGAGAAA 59.814 43.478 0.00 0.00 40.48 2.52
4626 4796 2.736721 CAGCGAACTGGAAAATCGAGAA 59.263 45.455 0.00 0.00 40.48 2.87
4627 4797 2.337583 CAGCGAACTGGAAAATCGAGA 58.662 47.619 0.00 0.00 40.48 4.04
4628 4798 2.795121 CAGCGAACTGGAAAATCGAG 57.205 50.000 0.00 0.00 40.48 4.04
4639 4809 1.594331 GGGAAACTGAACAGCGAACT 58.406 50.000 1.46 0.00 0.00 3.01
4640 4810 0.591659 GGGGAAACTGAACAGCGAAC 59.408 55.000 1.46 0.00 0.00 3.95
4641 4811 0.181587 TGGGGAAACTGAACAGCGAA 59.818 50.000 1.46 0.00 0.00 4.70
4642 4812 0.400213 ATGGGGAAACTGAACAGCGA 59.600 50.000 1.46 0.00 0.00 4.93
4643 4813 0.523072 CATGGGGAAACTGAACAGCG 59.477 55.000 1.46 0.00 0.00 5.18
4644 4814 1.620822 ACATGGGGAAACTGAACAGC 58.379 50.000 0.00 0.00 0.00 4.40
4645 4815 5.982890 ATAAACATGGGGAAACTGAACAG 57.017 39.130 0.00 0.00 0.00 3.16
4646 4816 7.148154 CGAATATAAACATGGGGAAACTGAACA 60.148 37.037 0.00 0.00 0.00 3.18
4647 4817 7.148137 ACGAATATAAACATGGGGAAACTGAAC 60.148 37.037 0.00 0.00 0.00 3.18
4648 4818 6.887545 ACGAATATAAACATGGGGAAACTGAA 59.112 34.615 0.00 0.00 0.00 3.02
4649 4819 6.419791 ACGAATATAAACATGGGGAAACTGA 58.580 36.000 0.00 0.00 0.00 3.41
4650 4820 6.693315 ACGAATATAAACATGGGGAAACTG 57.307 37.500 0.00 0.00 0.00 3.16
4651 4821 7.712204 AAACGAATATAAACATGGGGAAACT 57.288 32.000 0.00 0.00 0.00 2.66
4652 4822 8.766000 AAAAACGAATATAAACATGGGGAAAC 57.234 30.769 0.00 0.00 0.00 2.78
4718 4888 7.872113 AATGGTGCATTTAGGAAAACAAAAA 57.128 28.000 0.00 0.00 28.76 1.94
4719 4889 7.872113 AAATGGTGCATTTAGGAAAACAAAA 57.128 28.000 0.00 0.00 41.50 2.44
4720 4890 7.872113 AAAATGGTGCATTTAGGAAAACAAA 57.128 28.000 0.00 0.00 42.32 2.83
4721 4891 7.872113 AAAAATGGTGCATTTAGGAAAACAA 57.128 28.000 0.00 0.00 42.32 2.83
4765 4935 7.649705 TCGGAAAACATCATCGAATTTGAAAAA 59.350 29.630 0.00 0.00 0.00 1.94
4766 4936 7.142021 TCGGAAAACATCATCGAATTTGAAAA 58.858 30.769 0.00 0.00 0.00 2.29
4767 4937 6.673106 TCGGAAAACATCATCGAATTTGAAA 58.327 32.000 0.00 0.00 0.00 2.69
4768 4938 6.247727 TCGGAAAACATCATCGAATTTGAA 57.752 33.333 0.00 0.00 0.00 2.69
4769 4939 5.871465 TCGGAAAACATCATCGAATTTGA 57.129 34.783 0.00 0.00 0.00 2.69
4770 4940 8.613613 TTATTCGGAAAACATCATCGAATTTG 57.386 30.769 13.13 0.00 44.67 2.32
4854 5024 9.258629 AGATCATCCAATTTGAAAAGGTTCATA 57.741 29.630 0.00 0.00 43.29 2.15
4855 5025 8.142485 AGATCATCCAATTTGAAAAGGTTCAT 57.858 30.769 0.00 0.00 43.29 2.57
4856 5026 7.543359 AGATCATCCAATTTGAAAAGGTTCA 57.457 32.000 0.00 0.00 42.12 3.18
4857 5027 8.837788 AAAGATCATCCAATTTGAAAAGGTTC 57.162 30.769 0.00 0.00 0.00 3.62
4858 5028 9.276590 GAAAAGATCATCCAATTTGAAAAGGTT 57.723 29.630 0.00 0.00 0.00 3.50
4859 5029 8.654094 AGAAAAGATCATCCAATTTGAAAAGGT 58.346 29.630 0.00 0.00 0.00 3.50
4860 5030 9.498176 AAGAAAAGATCATCCAATTTGAAAAGG 57.502 29.630 0.00 0.00 0.00 3.11
4945 5115 7.875041 TGTTCATGGTTTTGAAGAAAAGTTCAA 59.125 29.630 0.00 0.00 43.21 2.69
4946 5116 7.382110 TGTTCATGGTTTTGAAGAAAAGTTCA 58.618 30.769 0.00 0.00 36.34 3.18
4947 5117 7.826260 TGTTCATGGTTTTGAAGAAAAGTTC 57.174 32.000 0.00 0.00 36.34 3.01
4948 5118 8.791327 AATGTTCATGGTTTTGAAGAAAAGTT 57.209 26.923 0.00 0.00 36.34 2.66
4949 5119 8.791327 AAATGTTCATGGTTTTGAAGAAAAGT 57.209 26.923 0.00 0.00 36.34 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.