Multiple sequence alignment - TraesCS3B01G392600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G392600 chr3B 100.000 4680 0 0 1 4680 618147584 618152263 0.000000e+00 8643
1 TraesCS3B01G392600 chr3A 90.562 4238 214 68 345 4503 608188519 608192649 0.000000e+00 5439
2 TraesCS3B01G392600 chr3A 88.298 282 24 3 12 286 608187926 608188205 3.490000e-86 329
3 TraesCS3B01G392600 chr3D 93.820 3495 130 34 927 4365 464800348 464803812 0.000000e+00 5179
4 TraesCS3B01G392600 chr3D 88.162 321 19 9 1 304 464798883 464799201 9.570000e-97 364
5 TraesCS3B01G392600 chr3D 93.923 181 7 2 606 782 464799761 464799941 2.150000e-68 270
6 TraesCS3B01G392600 chr3D 91.954 174 9 2 4512 4680 464804050 464804223 6.050000e-59 239
7 TraesCS3B01G392600 chr3D 86.885 183 10 9 345 522 464799548 464799721 4.780000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G392600 chr3B 618147584 618152263 4679 False 8643 8643 100.0000 1 4680 1 chr3B.!!$F1 4679
1 TraesCS3B01G392600 chr3A 608187926 608192649 4723 False 2884 5439 89.4300 12 4503 2 chr3A.!!$F1 4491
2 TraesCS3B01G392600 chr3D 464798883 464804223 5340 False 1249 5179 90.9488 1 4680 5 chr3D.!!$F1 4679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 733 0.030908 GTCTGGATTAGAGTCGCGGG 59.969 60.0 6.13 0.00 35.7 6.13 F
474 811 0.109153 ATCAACACAGGCACAGCTCA 59.891 50.0 0.00 0.00 0.0 4.26 F
999 1637 0.171455 GACCGAGTCGAATCAGCAGT 59.829 55.0 15.64 4.22 0.0 4.40 F
1649 2312 0.603975 AACTCCTTCAACAGCCTCGC 60.604 55.0 0.00 0.00 0.0 5.03 F
3382 4054 0.529555 GGTGCGGAATCAGAGAGCTC 60.530 60.0 5.27 5.27 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 2535 0.454600 CGCTGCTGCCATTTGAAGAT 59.545 50.000 10.24 0.00 35.36 2.40 R
2379 3051 2.733956 TGTTTGACCTGTTTCTTGCCT 58.266 42.857 0.00 0.00 0.00 4.75 R
2565 3237 2.046892 GCAAGCCTCGCCTCAAGA 60.047 61.111 0.00 0.00 0.00 3.02 R
3602 4277 0.831711 AATGGGTTGTTGGCCAGGAC 60.832 55.000 5.11 2.33 0.00 3.85 R
4551 5335 1.084289 GGTTCGCCTGTTAATTCGCT 58.916 50.000 0.00 0.00 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 30 9.667107 TTTACTGTCAAAGAGGGACAATTATAG 57.333 33.333 0.00 0.00 44.04 1.31
70 76 2.398754 TTCACTGGTCAGAGAGGGAA 57.601 50.000 4.84 0.00 30.10 3.97
148 156 0.951558 GGCAATACCATTGGCCTACG 59.048 55.000 12.94 0.00 43.09 3.51
161 169 3.537580 TGGCCTACGATTTGTTATCACC 58.462 45.455 3.32 0.00 0.00 4.02
162 170 2.542595 GGCCTACGATTTGTTATCACCG 59.457 50.000 0.00 0.00 0.00 4.94
163 171 2.033151 GCCTACGATTTGTTATCACCGC 60.033 50.000 0.00 0.00 0.00 5.68
164 172 3.191669 CCTACGATTTGTTATCACCGCA 58.808 45.455 0.00 0.00 0.00 5.69
184 200 3.068590 GCACCCATGGATTAATCTGTTGG 59.931 47.826 15.22 16.61 0.00 3.77
230 246 2.846532 GATCCCCCAATGCCGGAT 59.153 61.111 5.05 0.00 39.14 4.18
286 304 3.069586 TCGTCTTCTTCACCACTGATTGT 59.930 43.478 0.00 0.00 0.00 2.71
290 308 5.178438 GTCTTCTTCACCACTGATTGTTCTC 59.822 44.000 0.00 0.00 0.00 2.87
294 312 1.800586 CACCACTGATTGTTCTCCACG 59.199 52.381 0.00 0.00 0.00 4.94
304 322 3.842007 TGTTCTCCACGGAAAGGTTAA 57.158 42.857 0.00 0.00 0.00 2.01
306 324 3.878699 TGTTCTCCACGGAAAGGTTAAAC 59.121 43.478 0.00 0.00 0.00 2.01
309 327 5.486735 TCTCCACGGAAAGGTTAAACATA 57.513 39.130 0.00 0.00 0.00 2.29
310 328 6.057321 TCTCCACGGAAAGGTTAAACATAT 57.943 37.500 0.00 0.00 0.00 1.78
311 329 7.185318 TCTCCACGGAAAGGTTAAACATATA 57.815 36.000 0.00 0.00 0.00 0.86
312 330 7.043565 TCTCCACGGAAAGGTTAAACATATAC 58.956 38.462 0.00 0.00 0.00 1.47
313 331 6.709281 TCCACGGAAAGGTTAAACATATACA 58.291 36.000 0.00 0.00 0.00 2.29
315 333 7.496591 TCCACGGAAAGGTTAAACATATACATC 59.503 37.037 0.00 0.00 0.00 3.06
316 334 7.255001 CCACGGAAAGGTTAAACATATACATCC 60.255 40.741 0.00 0.00 0.00 3.51
318 512 6.565247 CGGAAAGGTTAAACATATACATCCGC 60.565 42.308 0.00 0.00 0.00 5.54
322 516 7.633193 AGGTTAAACATATACATCCGCAAAA 57.367 32.000 0.00 0.00 0.00 2.44
396 733 0.030908 GTCTGGATTAGAGTCGCGGG 59.969 60.000 6.13 0.00 35.70 6.13
398 735 1.076559 TGGATTAGAGTCGCGGGGA 60.077 57.895 6.13 0.00 0.00 4.81
465 802 1.068055 GCCTTGAGCAATCAACACAGG 60.068 52.381 0.00 0.00 42.97 4.00
466 803 1.068055 CCTTGAGCAATCAACACAGGC 60.068 52.381 0.00 0.00 0.00 4.85
467 804 1.610038 CTTGAGCAATCAACACAGGCA 59.390 47.619 0.00 0.00 0.00 4.75
468 805 0.953727 TGAGCAATCAACACAGGCAC 59.046 50.000 0.00 0.00 0.00 5.01
469 806 0.953727 GAGCAATCAACACAGGCACA 59.046 50.000 0.00 0.00 0.00 4.57
470 807 0.956633 AGCAATCAACACAGGCACAG 59.043 50.000 0.00 0.00 0.00 3.66
472 809 0.956633 CAATCAACACAGGCACAGCT 59.043 50.000 0.00 0.00 0.00 4.24
473 810 1.068748 CAATCAACACAGGCACAGCTC 60.069 52.381 0.00 0.00 0.00 4.09
474 811 0.109153 ATCAACACAGGCACAGCTCA 59.891 50.000 0.00 0.00 0.00 4.26
475 812 0.533531 TCAACACAGGCACAGCTCAG 60.534 55.000 0.00 0.00 0.00 3.35
476 813 1.895707 AACACAGGCACAGCTCAGC 60.896 57.895 0.00 0.00 0.00 4.26
529 867 3.519930 GCCGTCCCCGTCTCTCTC 61.520 72.222 0.00 0.00 0.00 3.20
594 932 0.250553 ATGGTTCGCCGAAACTTCCA 60.251 50.000 16.74 12.57 41.18 3.53
595 933 1.161563 TGGTTCGCCGAAACTTCCAC 61.162 55.000 16.74 0.00 41.18 4.02
596 934 1.203313 GTTCGCCGAAACTTCCACG 59.797 57.895 0.00 0.00 0.00 4.94
600 938 4.084888 CCGAAACTTCCACGGCGC 62.085 66.667 6.90 0.00 40.19 6.53
601 939 3.342627 CGAAACTTCCACGGCGCA 61.343 61.111 10.83 0.00 0.00 6.09
602 940 2.251371 GAAACTTCCACGGCGCAC 59.749 61.111 10.83 0.00 0.00 5.34
603 941 3.249973 GAAACTTCCACGGCGCACC 62.250 63.158 10.83 0.00 0.00 5.01
764 1110 3.103911 GTGTCGACACTTCCGCCG 61.104 66.667 35.51 0.00 43.25 6.46
774 1120 1.815421 CTTCCGCCGATTCACCAGG 60.815 63.158 0.00 0.00 0.00 4.45
779 1129 2.897207 CCGATTCACCAGGCCGTA 59.103 61.111 0.00 0.00 0.00 4.02
780 1130 1.227263 CCGATTCACCAGGCCGTAG 60.227 63.158 0.00 0.00 0.00 3.51
817 1167 1.966451 CCCGCGCCTCTCAAAAACT 60.966 57.895 0.00 0.00 0.00 2.66
821 1171 0.519077 GCGCCTCTCAAAAACTCCAG 59.481 55.000 0.00 0.00 0.00 3.86
822 1172 0.519077 CGCCTCTCAAAAACTCCAGC 59.481 55.000 0.00 0.00 0.00 4.85
834 1184 3.338250 TCCAGCCCGCCTCCATTT 61.338 61.111 0.00 0.00 0.00 2.32
835 1185 2.830370 CCAGCCCGCCTCCATTTC 60.830 66.667 0.00 0.00 0.00 2.17
855 1205 0.404946 CCCCCATTTATCCTCCCCCT 60.405 60.000 0.00 0.00 0.00 4.79
856 1206 1.076438 CCCCATTTATCCTCCCCCTC 58.924 60.000 0.00 0.00 0.00 4.30
858 1208 1.418109 CCCATTTATCCTCCCCCTCCT 60.418 57.143 0.00 0.00 0.00 3.69
900 1265 2.766229 GCCACCTCCCCTCTCTCC 60.766 72.222 0.00 0.00 0.00 3.71
902 1267 2.041405 CACCTCCCCTCTCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
903 1268 2.204705 ACCTCCCCTCTCTCCCCT 60.205 66.667 0.00 0.00 0.00 4.79
904 1269 2.329399 ACCTCCCCTCTCTCCCCTC 61.329 68.421 0.00 0.00 0.00 4.30
905 1270 2.612251 CTCCCCTCTCTCCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
906 1271 3.036959 TCCCCTCTCTCCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
907 1272 3.039526 CCCCTCTCTCCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
908 1273 2.612251 CCCTCTCTCCCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
909 1274 2.612251 CCTCTCTCCCCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
910 1275 2.612251 CTCTCTCCCCTCCCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
911 1276 2.018086 CTCTCTCCCCTCCCTCCCT 61.018 68.421 0.00 0.00 0.00 4.20
912 1277 2.015726 TCTCTCCCCTCCCTCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
913 1278 3.036959 TCTCCCCTCCCTCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
914 1279 4.179599 CTCCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
915 1280 4.761304 TCCCCTCCCTCCCTCCCT 62.761 72.222 0.00 0.00 0.00 4.20
916 1281 4.179599 CCCCTCCCTCCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
917 1282 4.548513 CCCTCCCTCCCTCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
918 1283 4.548513 CCTCCCTCCCTCCCTCGG 62.549 77.778 0.00 0.00 0.00 4.63
919 1284 4.548513 CTCCCTCCCTCCCTCGGG 62.549 77.778 0.00 0.00 46.13 5.14
937 1563 2.986979 TCGCCACTCAGGTACGCA 60.987 61.111 0.00 0.00 40.61 5.24
965 1603 3.948086 CTCGTCGGCCCGCGATATC 62.948 68.421 19.70 0.00 35.73 1.63
969 1607 1.002990 TCGGCCCGCGATATCTCTA 60.003 57.895 8.23 0.00 0.00 2.43
970 1608 1.136984 CGGCCCGCGATATCTCTAC 59.863 63.158 8.23 0.00 0.00 2.59
971 1609 1.511768 GGCCCGCGATATCTCTACC 59.488 63.158 8.23 0.00 0.00 3.18
980 1618 3.004171 CGATATCTCTACCCTCGTCAGG 58.996 54.545 0.34 0.00 39.98 3.86
981 1619 3.306849 CGATATCTCTACCCTCGTCAGGA 60.307 52.174 0.34 0.00 43.65 3.86
997 1635 0.965866 AGGACCGAGTCGAATCAGCA 60.966 55.000 15.64 0.00 32.65 4.41
998 1636 0.526524 GGACCGAGTCGAATCAGCAG 60.527 60.000 15.64 0.90 32.65 4.24
999 1637 0.171455 GACCGAGTCGAATCAGCAGT 59.829 55.000 15.64 4.22 0.00 4.40
1004 1642 0.171455 AGTCGAATCAGCAGTCGTCC 59.829 55.000 0.00 0.00 40.96 4.79
1005 1643 0.171455 GTCGAATCAGCAGTCGTCCT 59.829 55.000 0.00 0.00 40.96 3.85
1008 1646 1.132453 CGAATCAGCAGTCGTCCTGTA 59.868 52.381 6.70 0.00 43.55 2.74
1027 1665 2.018866 GATTCCGCGCTGATCTCCG 61.019 63.158 5.56 0.00 0.00 4.63
1028 1666 4.873129 TTCCGCGCTGATCTCCGC 62.873 66.667 16.92 16.92 46.17 5.54
1032 1670 2.510238 GCGCTGATCTCCGCTGTT 60.510 61.111 18.78 0.00 46.14 3.16
1033 1671 2.103042 GCGCTGATCTCCGCTGTTT 61.103 57.895 18.78 0.00 46.14 2.83
1034 1672 1.639298 GCGCTGATCTCCGCTGTTTT 61.639 55.000 18.78 0.00 46.14 2.43
1035 1673 0.798776 CGCTGATCTCCGCTGTTTTT 59.201 50.000 0.00 0.00 0.00 1.94
1036 1674 1.201965 CGCTGATCTCCGCTGTTTTTC 60.202 52.381 0.00 0.00 0.00 2.29
1037 1675 1.201965 GCTGATCTCCGCTGTTTTTCG 60.202 52.381 0.00 0.00 0.00 3.46
1038 1676 1.394917 CTGATCTCCGCTGTTTTTCGG 59.605 52.381 0.00 0.00 46.52 4.30
1379 2033 4.070552 GCCGAGAGACGCCTTGGT 62.071 66.667 7.81 0.00 39.45 3.67
1386 2043 2.746697 AGACGCCTTGGTCTCTTCA 58.253 52.632 0.00 0.00 43.63 3.02
1523 2186 3.935456 ATCACTACCCGGCCCACCA 62.935 63.158 0.00 0.00 34.57 4.17
1605 2268 3.063084 GGGAGCACGGTCGAGAGT 61.063 66.667 0.00 0.00 0.00 3.24
1646 2309 0.846693 ACCAACTCCTTCAACAGCCT 59.153 50.000 0.00 0.00 0.00 4.58
1649 2312 0.603975 AACTCCTTCAACAGCCTCGC 60.604 55.000 0.00 0.00 0.00 5.03
1651 2314 2.032528 CCTTCAACAGCCTCGCCA 59.967 61.111 0.00 0.00 0.00 5.69
1719 2385 2.756283 CCCGCTCTCGAGTTCCCT 60.756 66.667 13.13 0.00 38.10 4.20
1821 2490 1.003851 CGTACGACGCCATGGAATTT 58.996 50.000 18.40 0.00 33.65 1.82
1833 2502 3.960755 CCATGGAATTTAACCCTCTTCCC 59.039 47.826 5.56 0.00 37.03 3.97
1845 2514 3.041940 CTTCCCGACGCGTTGCTT 61.042 61.111 21.38 0.00 0.00 3.91
1866 2535 2.962569 CAGTCGTCCTCCTTCGCA 59.037 61.111 0.00 0.00 0.00 5.10
2122 2794 3.430651 GGTCAAGAGAGAGAAGGCTGATG 60.431 52.174 0.00 0.00 0.00 3.07
2541 3213 2.436646 GGTGATGGTGACCAGCGG 60.437 66.667 15.79 0.00 43.67 5.52
2565 3237 1.368579 GCACTGCTTTGCCAATGGT 59.631 52.632 0.00 0.00 36.42 3.55
2661 3333 5.810587 TGATATTCTGAAAGCGTACCAACTC 59.189 40.000 0.00 0.00 0.00 3.01
3378 4050 1.219124 GCAGGTGCGGAATCAGAGA 59.781 57.895 0.00 0.00 0.00 3.10
3382 4054 0.529555 GGTGCGGAATCAGAGAGCTC 60.530 60.000 5.27 5.27 0.00 4.09
3435 4107 1.959226 GAAGCGTGCACGGGAGAAA 60.959 57.895 37.47 0.00 40.23 2.52
3478 4150 1.191944 CATCATCGACGAGGACAACG 58.808 55.000 15.17 0.20 0.00 4.10
3540 4212 1.734465 CTCTCAACATGGAAGGCGAAC 59.266 52.381 0.00 0.00 0.00 3.95
3548 4220 1.304962 GGAAGGCGAACCCCCAATT 60.305 57.895 0.00 0.00 36.11 2.32
3602 4277 4.478206 TTTGGACTCTAGAGCTGATTGG 57.522 45.455 19.97 0.00 0.00 3.16
3618 4293 2.600470 GGTCCTGGCCAACAACCC 60.600 66.667 16.56 5.44 0.00 4.11
3629 4304 3.054213 GGCCAACAACCCATTAGTAGGTA 60.054 47.826 0.00 0.00 34.45 3.08
3630 4305 4.568169 GGCCAACAACCCATTAGTAGGTAA 60.568 45.833 0.00 0.00 34.45 2.85
3652 4327 2.559998 AAATGCTATTTGAACCGGCG 57.440 45.000 0.00 0.00 0.00 6.46
3659 4334 2.153547 ATTTGAACCGGCGCCAAAGG 62.154 55.000 28.98 22.17 33.91 3.11
3666 4341 1.066587 CGGCGCCAAAGGAACAAAA 59.933 52.632 28.98 0.00 0.00 2.44
3851 4527 7.282585 TGTAGCATATAGGTTCTTCTTGCATT 58.717 34.615 0.00 0.00 0.00 3.56
3876 4552 8.867112 TGTCAGTCTTGTATTATATTCGTTCC 57.133 34.615 0.00 0.00 0.00 3.62
3890 4566 5.776173 ATTCGTTCCTCCAGAGTACTATG 57.224 43.478 10.63 10.63 0.00 2.23
3904 4580 7.223582 CCAGAGTACTATGCAGTAATGTTTCAG 59.776 40.741 12.13 0.00 38.98 3.02
3905 4581 6.758886 AGAGTACTATGCAGTAATGTTTCAGC 59.241 38.462 0.00 0.00 38.98 4.26
3906 4582 6.406370 AGTACTATGCAGTAATGTTTCAGCA 58.594 36.000 0.00 0.00 38.98 4.41
3936 4624 3.495753 GTCAGCCTTTTTCATTTGCTTGG 59.504 43.478 0.00 0.00 0.00 3.61
3939 4627 3.878699 AGCCTTTTTCATTTGCTTGGTTG 59.121 39.130 0.00 0.00 0.00 3.77
3947 4635 8.498054 TTTTCATTTGCTTGGTTGAAATTGTA 57.502 26.923 0.00 0.00 37.76 2.41
4033 4721 7.093992 GCACTCATATATCCCTCTACTGTTTC 58.906 42.308 0.00 0.00 0.00 2.78
4039 4727 4.722361 ATCCCTCTACTGTTTCGTCTTC 57.278 45.455 0.00 0.00 0.00 2.87
4043 4731 3.305199 CCTCTACTGTTTCGTCTTCCGTT 60.305 47.826 0.00 0.00 37.94 4.44
4080 4768 3.624326 TGTTTTACATGCTGCACAGTC 57.376 42.857 3.57 0.00 0.00 3.51
4100 4788 5.421056 CAGTCCTACCAGTCACCAATAGTTA 59.579 44.000 0.00 0.00 0.00 2.24
4103 4791 5.655532 TCCTACCAGTCACCAATAGTTAGTC 59.344 44.000 0.00 0.00 0.00 2.59
4113 4801 5.647658 CACCAATAGTTAGTCTCATTTGCCA 59.352 40.000 0.00 0.00 0.00 4.92
4116 4804 6.259608 CCAATAGTTAGTCTCATTTGCCAGAG 59.740 42.308 0.00 0.00 0.00 3.35
4117 4805 6.798427 ATAGTTAGTCTCATTTGCCAGAGA 57.202 37.500 0.00 0.00 38.49 3.10
4128 4816 6.888105 TCATTTGCCAGAGAGTGATACAATA 58.112 36.000 0.00 0.00 0.00 1.90
4131 4819 9.445878 CATTTGCCAGAGAGTGATACAATATAT 57.554 33.333 0.00 0.00 0.00 0.86
4141 4829 9.019656 AGAGTGATACAATATATCTGGTCACTC 57.980 37.037 27.35 27.35 46.95 3.51
4178 4868 8.019094 GCTGTTGTACCTAACGAATAATGTTTT 58.981 33.333 0.00 0.00 33.28 2.43
4179 4869 9.325150 CTGTTGTACCTAACGAATAATGTTTTG 57.675 33.333 0.00 0.00 33.28 2.44
4180 4870 9.053840 TGTTGTACCTAACGAATAATGTTTTGA 57.946 29.630 0.00 0.00 33.28 2.69
4182 4872 9.491675 TTGTACCTAACGAATAATGTTTTGAGA 57.508 29.630 0.00 0.00 0.00 3.27
4183 4873 9.661563 TGTACCTAACGAATAATGTTTTGAGAT 57.338 29.630 0.00 0.00 0.00 2.75
4225 4915 1.412710 TCCCAGTCTGTTGAGTGACAC 59.587 52.381 0.00 0.00 44.27 3.67
4238 4929 0.877071 GTGACACAGTCATTGGCTGG 59.123 55.000 21.54 12.91 44.63 4.85
4268 4959 3.213506 CCTTTCACTTGTCATGGTGTGA 58.786 45.455 0.00 0.10 37.62 3.58
4319 5011 1.846007 TTTGGACCCCGATCAAATGG 58.154 50.000 0.00 0.00 0.00 3.16
4392 5084 7.669089 TTTTTCCTTCTTCCAAATGTTAGGT 57.331 32.000 0.00 0.00 0.00 3.08
4393 5085 7.669089 TTTTCCTTCTTCCAAATGTTAGGTT 57.331 32.000 0.00 0.00 0.00 3.50
4394 5086 6.648879 TTCCTTCTTCCAAATGTTAGGTTG 57.351 37.500 0.00 0.00 0.00 3.77
4395 5087 5.947663 TCCTTCTTCCAAATGTTAGGTTGA 58.052 37.500 0.00 0.00 0.00 3.18
4396 5088 6.552008 TCCTTCTTCCAAATGTTAGGTTGAT 58.448 36.000 0.00 0.00 0.00 2.57
4397 5089 7.695055 TCCTTCTTCCAAATGTTAGGTTGATA 58.305 34.615 0.00 0.00 0.00 2.15
4400 5092 8.934023 TTCTTCCAAATGTTAGGTTGATAGTT 57.066 30.769 0.00 0.00 0.00 2.24
4424 5136 9.658799 GTTAATCTTATTGCCAGCTCATATAGA 57.341 33.333 0.00 0.00 0.00 1.98
4449 5161 3.563390 AGCAAACTGAGTTCTTGAGCTTC 59.437 43.478 0.00 0.00 0.00 3.86
4453 5165 5.552870 AACTGAGTTCTTGAGCTTCCTAA 57.447 39.130 0.00 0.00 0.00 2.69
4465 5177 4.530553 TGAGCTTCCTAACCACAACTCATA 59.469 41.667 0.00 0.00 0.00 2.15
4467 5179 6.382859 TGAGCTTCCTAACCACAACTCATATA 59.617 38.462 0.00 0.00 0.00 0.86
4468 5180 6.821388 AGCTTCCTAACCACAACTCATATAG 58.179 40.000 0.00 0.00 0.00 1.31
4469 5181 6.384305 AGCTTCCTAACCACAACTCATATAGT 59.616 38.462 0.00 0.00 41.49 2.12
4471 5183 7.553044 GCTTCCTAACCACAACTCATATAGTTT 59.447 37.037 0.00 0.00 46.61 2.66
4474 5186 8.202137 TCCTAACCACAACTCATATAGTTTAGC 58.798 37.037 0.00 0.00 46.61 3.09
4475 5187 8.204836 CCTAACCACAACTCATATAGTTTAGCT 58.795 37.037 0.00 0.00 46.61 3.32
4476 5188 9.601217 CTAACCACAACTCATATAGTTTAGCTT 57.399 33.333 0.00 0.00 46.61 3.74
4477 5189 7.849804 ACCACAACTCATATAGTTTAGCTTG 57.150 36.000 0.00 0.00 46.61 4.01
4479 5191 7.549488 ACCACAACTCATATAGTTTAGCTTGTC 59.451 37.037 0.00 0.00 46.61 3.18
4482 5194 7.275779 ACAACTCATATAGTTTAGCTTGTCGTG 59.724 37.037 0.00 0.00 46.61 4.35
4484 5196 6.973474 ACTCATATAGTTTAGCTTGTCGTGTC 59.027 38.462 0.00 0.00 33.35 3.67
4503 5215 2.687935 GTCTTTTCAGTTGCCTGTCCAA 59.312 45.455 0.00 0.00 39.82 3.53
4505 5217 3.960102 TCTTTTCAGTTGCCTGTCCAATT 59.040 39.130 0.00 0.00 39.82 2.32
4507 5219 4.751767 TTTCAGTTGCCTGTCCAATTTT 57.248 36.364 0.00 0.00 39.82 1.82
4510 5222 3.318839 TCAGTTGCCTGTCCAATTTTCAG 59.681 43.478 0.00 0.00 39.82 3.02
4533 5317 5.655532 AGTTGCTTATCCATTGCTCATCTTT 59.344 36.000 0.00 0.00 0.00 2.52
4551 5335 3.957497 TCTTTTTGCTGGTTTTGAGCCTA 59.043 39.130 0.00 0.00 35.43 3.93
4564 5348 3.179443 TGAGCCTAGCGAATTAACAGG 57.821 47.619 0.00 0.00 0.00 4.00
4575 5359 1.821216 ATTAACAGGCGAACCACCAG 58.179 50.000 0.00 0.00 39.06 4.00
4640 5427 1.548719 ACGTGTATGCTACAGCTCCAA 59.451 47.619 2.44 0.00 39.77 3.53
4647 5434 1.341852 TGCTACAGCTCCAAACGTGTA 59.658 47.619 2.44 0.00 42.66 2.90
4648 5435 1.725164 GCTACAGCTCCAAACGTGTAC 59.275 52.381 0.00 0.00 38.21 2.90
4672 5461 1.423161 GGCCTGGGCATCTAGAAGAAT 59.577 52.381 16.34 0.00 44.11 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 48 4.019858 CCTCTCTGACCAGTGAATGTCTA 58.980 47.826 0.00 0.00 31.50 2.59
56 62 3.045634 TGACTTTTTCCCTCTCTGACCA 58.954 45.455 0.00 0.00 0.00 4.02
57 63 3.771577 TGACTTTTTCCCTCTCTGACC 57.228 47.619 0.00 0.00 0.00 4.02
143 151 3.000925 GTGCGGTGATAACAAATCGTAGG 59.999 47.826 0.00 0.00 0.00 3.18
148 156 2.088423 TGGGTGCGGTGATAACAAATC 58.912 47.619 0.00 0.00 0.00 2.17
161 169 2.575532 ACAGATTAATCCATGGGTGCG 58.424 47.619 13.02 0.00 0.00 5.34
162 170 3.068590 CCAACAGATTAATCCATGGGTGC 59.931 47.826 13.02 0.00 0.00 5.01
163 171 4.535781 TCCAACAGATTAATCCATGGGTG 58.464 43.478 22.09 14.42 0.00 4.61
164 172 4.879295 TCCAACAGATTAATCCATGGGT 57.121 40.909 22.09 0.00 0.00 4.51
184 200 3.614092 ACATGGATGTCACCTTCACATC 58.386 45.455 0.00 4.52 46.50 3.06
207 223 0.469892 GGCATTGGGGGATCGGATTT 60.470 55.000 0.00 0.00 0.00 2.17
230 246 8.965819 TCATTACAAAATTAAGCAGCCATCTAA 58.034 29.630 0.00 0.00 0.00 2.10
286 304 4.153673 TGTTTAACCTTTCCGTGGAGAA 57.846 40.909 0.00 0.00 0.00 2.87
290 308 6.988622 TGTATATGTTTAACCTTTCCGTGG 57.011 37.500 0.00 0.00 0.00 4.94
294 312 6.261381 TGCGGATGTATATGTTTAACCTTTCC 59.739 38.462 0.00 0.00 0.00 3.13
353 680 3.825908 TGGATTTCCTGGTTAGCCTTT 57.174 42.857 0.00 0.00 36.82 3.11
371 698 3.711086 CGACTCTAATCCAGACACATGG 58.289 50.000 0.00 0.00 42.11 3.66
396 733 1.399727 CGTTTGACTTCGTTGCCATCC 60.400 52.381 0.00 0.00 0.00 3.51
398 735 0.591170 CCGTTTGACTTCGTTGCCAT 59.409 50.000 0.00 0.00 0.00 4.40
466 803 2.667536 AACGCTGGCTGAGCTGTG 60.668 61.111 3.72 7.18 46.64 3.66
467 804 2.667536 CAACGCTGGCTGAGCTGT 60.668 61.111 3.72 0.00 46.64 4.40
468 805 4.099170 GCAACGCTGGCTGAGCTG 62.099 66.667 3.72 0.00 46.64 4.24
481 818 4.980805 TCGTGGACCAGCGGCAAC 62.981 66.667 13.96 0.00 0.00 4.17
482 819 4.680237 CTCGTGGACCAGCGGCAA 62.680 66.667 13.96 0.00 0.00 4.52
515 853 0.544697 AGAGAGAGAGAGACGGGGAC 59.455 60.000 0.00 0.00 0.00 4.46
516 854 0.544223 CAGAGAGAGAGAGACGGGGA 59.456 60.000 0.00 0.00 0.00 4.81
517 855 1.101049 GCAGAGAGAGAGAGACGGGG 61.101 65.000 0.00 0.00 0.00 5.73
518 856 0.107214 AGCAGAGAGAGAGAGACGGG 60.107 60.000 0.00 0.00 0.00 5.28
519 857 1.016627 CAGCAGAGAGAGAGAGACGG 58.983 60.000 0.00 0.00 0.00 4.79
520 858 0.378257 GCAGCAGAGAGAGAGAGACG 59.622 60.000 0.00 0.00 0.00 4.18
521 859 0.740737 GGCAGCAGAGAGAGAGAGAC 59.259 60.000 0.00 0.00 0.00 3.36
522 860 0.395586 GGGCAGCAGAGAGAGAGAGA 60.396 60.000 0.00 0.00 0.00 3.10
523 861 1.727511 CGGGCAGCAGAGAGAGAGAG 61.728 65.000 0.00 0.00 0.00 3.20
524 862 1.752310 CGGGCAGCAGAGAGAGAGA 60.752 63.158 0.00 0.00 0.00 3.10
525 863 2.051518 ACGGGCAGCAGAGAGAGAG 61.052 63.158 0.00 0.00 0.00 3.20
526 864 2.036414 ACGGGCAGCAGAGAGAGA 59.964 61.111 0.00 0.00 0.00 3.10
527 865 2.183811 CACGGGCAGCAGAGAGAG 59.816 66.667 0.00 0.00 0.00 3.20
528 866 4.074526 GCACGGGCAGCAGAGAGA 62.075 66.667 3.77 0.00 40.72 3.10
555 893 4.113815 TCTGGCCTGGCGATTGGG 62.114 66.667 13.40 0.00 0.00 4.12
556 894 2.825836 GTCTGGCCTGGCGATTGG 60.826 66.667 13.40 0.00 0.00 3.16
557 895 2.930385 ATCGTCTGGCCTGGCGATTG 62.930 60.000 37.08 12.68 40.57 2.67
558 896 2.735772 ATCGTCTGGCCTGGCGATT 61.736 57.895 37.08 24.60 40.57 3.34
559 897 3.157252 ATCGTCTGGCCTGGCGAT 61.157 61.111 37.08 37.08 38.95 4.58
560 898 4.147449 CATCGTCTGGCCTGGCGA 62.147 66.667 36.20 36.20 37.76 5.54
623 961 4.041917 GCGTACGTGGTGGGTCGA 62.042 66.667 17.90 0.00 0.00 4.20
764 1110 1.146263 CCCTACGGCCTGGTGAATC 59.854 63.158 0.00 0.00 0.00 2.52
817 1167 3.338250 AAATGGAGGCGGGCTGGA 61.338 61.111 9.52 0.00 0.00 3.86
822 1172 4.522975 GGGGGAAATGGAGGCGGG 62.523 72.222 0.00 0.00 0.00 6.13
855 1205 4.430765 GTTTCGGGAGCGCGAGGA 62.431 66.667 12.10 0.00 0.00 3.71
856 1206 4.436998 AGTTTCGGGAGCGCGAGG 62.437 66.667 12.10 0.00 0.00 4.63
858 1208 4.771356 CGAGTTTCGGGAGCGCGA 62.771 66.667 12.10 5.50 36.00 5.87
893 1258 2.018086 AGGGAGGGAGGGGAGAGAG 61.018 68.421 0.00 0.00 0.00 3.20
894 1259 2.015726 GAGGGAGGGAGGGGAGAGA 61.016 68.421 0.00 0.00 0.00 3.10
895 1260 2.612251 GAGGGAGGGAGGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
896 1261 3.036959 GGAGGGAGGGAGGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
897 1262 4.179599 GGGAGGGAGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
900 1265 4.548513 CGAGGGAGGGAGGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
913 1278 4.135153 CTGAGTGGCGACCCGAGG 62.135 72.222 0.00 0.00 0.00 4.63
914 1279 4.135153 CCTGAGTGGCGACCCGAG 62.135 72.222 0.00 0.00 0.00 4.63
915 1280 3.572447 TACCTGAGTGGCGACCCGA 62.572 63.158 0.00 0.00 40.22 5.14
916 1281 3.066190 TACCTGAGTGGCGACCCG 61.066 66.667 0.00 0.00 40.22 5.28
917 1282 2.577593 GTACCTGAGTGGCGACCC 59.422 66.667 0.00 0.00 40.22 4.46
918 1283 2.181021 CGTACCTGAGTGGCGACC 59.819 66.667 0.00 0.00 40.22 4.79
919 1284 2.506438 GCGTACCTGAGTGGCGAC 60.506 66.667 0.00 0.00 40.22 5.19
920 1285 2.986979 TGCGTACCTGAGTGGCGA 60.987 61.111 0.00 0.00 40.22 5.54
927 1292 3.740397 CCGACGGTGCGTACCTGA 61.740 66.667 20.87 0.00 45.22 3.86
957 1583 1.394227 GACGAGGGTAGAGATATCGCG 59.606 57.143 0.00 0.00 36.89 5.87
960 1586 4.004982 GTCCTGACGAGGGTAGAGATATC 58.995 52.174 0.00 0.00 40.25 1.63
963 1601 1.133730 GGTCCTGACGAGGGTAGAGAT 60.134 57.143 0.00 0.00 40.25 2.75
965 1603 1.096386 CGGTCCTGACGAGGGTAGAG 61.096 65.000 0.00 0.00 40.25 2.43
980 1618 0.171455 ACTGCTGATTCGACTCGGTC 59.829 55.000 12.61 6.34 0.00 4.79
981 1619 0.171455 GACTGCTGATTCGACTCGGT 59.829 55.000 12.61 2.64 0.00 4.69
997 1635 0.739561 GCGGAATCTACAGGACGACT 59.260 55.000 0.00 0.00 0.00 4.18
998 1636 0.591741 CGCGGAATCTACAGGACGAC 60.592 60.000 0.00 0.00 0.00 4.34
999 1637 1.725665 CGCGGAATCTACAGGACGA 59.274 57.895 0.00 0.00 0.00 4.20
1004 1642 1.000827 AGATCAGCGCGGAATCTACAG 60.001 52.381 15.65 0.00 0.00 2.74
1005 1643 1.001268 GAGATCAGCGCGGAATCTACA 60.001 52.381 15.65 0.00 0.00 2.74
1008 1646 1.365633 GGAGATCAGCGCGGAATCT 59.634 57.895 15.65 17.15 0.00 2.40
1027 1665 3.241963 GCAAAAACAGACCGAAAAACAGC 60.242 43.478 0.00 0.00 0.00 4.40
1028 1666 3.001168 CGCAAAAACAGACCGAAAAACAG 60.001 43.478 0.00 0.00 0.00 3.16
1029 1667 2.917971 CGCAAAAACAGACCGAAAAACA 59.082 40.909 0.00 0.00 0.00 2.83
1030 1668 2.284798 GCGCAAAAACAGACCGAAAAAC 60.285 45.455 0.30 0.00 0.00 2.43
1031 1669 1.921230 GCGCAAAAACAGACCGAAAAA 59.079 42.857 0.30 0.00 0.00 1.94
1032 1670 1.135373 TGCGCAAAAACAGACCGAAAA 60.135 42.857 8.16 0.00 0.00 2.29
1033 1671 0.452184 TGCGCAAAAACAGACCGAAA 59.548 45.000 8.16 0.00 0.00 3.46
1034 1672 0.665835 ATGCGCAAAAACAGACCGAA 59.334 45.000 17.11 0.00 0.00 4.30
1035 1673 0.237235 GATGCGCAAAAACAGACCGA 59.763 50.000 17.11 0.00 0.00 4.69
1036 1674 0.238289 AGATGCGCAAAAACAGACCG 59.762 50.000 17.11 0.00 0.00 4.79
1037 1675 1.689959 CAGATGCGCAAAAACAGACC 58.310 50.000 17.11 0.00 0.00 3.85
1038 1676 1.055338 GCAGATGCGCAAAAACAGAC 58.945 50.000 17.11 0.00 0.00 3.51
1376 2030 3.059982 CAGCCGGTGAAGAGACCA 58.940 61.111 1.90 0.00 35.50 4.02
1506 2169 4.642488 TGGTGGGCCGGGTAGTGA 62.642 66.667 2.18 0.00 37.67 3.41
1590 2253 2.486042 GGACTCTCGACCGTGCTC 59.514 66.667 0.00 0.00 0.00 4.26
1719 2385 2.992689 TGCAGGAACTCCGCCGTA 60.993 61.111 9.17 0.00 42.08 4.02
1821 2490 2.703798 CGCGTCGGGAAGAGGGTTA 61.704 63.158 2.62 0.00 35.42 2.85
1845 2514 1.585006 GAAGGAGGACGACTGCGAA 59.415 57.895 0.00 0.00 43.20 4.70
1857 2526 2.223433 GCCATTTGAAGATGCGAAGGAG 60.223 50.000 0.00 0.00 0.00 3.69
1866 2535 0.454600 CGCTGCTGCCATTTGAAGAT 59.545 50.000 10.24 0.00 35.36 2.40
2379 3051 2.733956 TGTTTGACCTGTTTCTTGCCT 58.266 42.857 0.00 0.00 0.00 4.75
2541 3213 3.032033 GCAAAGCAGTGCGCCAAC 61.032 61.111 10.00 0.00 44.04 3.77
2565 3237 2.046892 GCAAGCCTCGCCTCAAGA 60.047 61.111 0.00 0.00 0.00 3.02
2652 3324 4.722361 AGCTGCTAAGTAGAGTTGGTAC 57.278 45.455 0.00 0.00 0.00 3.34
2661 3333 2.338577 ATGGGCAAGCTGCTAAGTAG 57.661 50.000 0.90 0.00 44.28 2.57
3081 3753 4.082245 GTGTTCAATACCATGTTCCTTGGG 60.082 45.833 0.00 0.00 38.64 4.12
3378 4050 1.375268 GAGCTGCTTGAACCGAGCT 60.375 57.895 2.53 0.00 44.50 4.09
3382 4054 3.121030 CGGGAGCTGCTTGAACCG 61.121 66.667 17.05 17.05 35.01 4.44
3407 4079 1.470098 GTGCACGCTTCATGATTTCCT 59.530 47.619 0.00 0.00 0.00 3.36
3435 4107 3.838244 TTCTTGTGGTAGCACTTCACT 57.162 42.857 24.35 0.00 33.04 3.41
3478 4150 2.841881 TCCATCCTTGTAGTAACCACCC 59.158 50.000 0.00 0.00 0.00 4.61
3540 4212 4.503714 TTACAGAAGCTAGAATTGGGGG 57.496 45.455 0.00 0.00 0.00 5.40
3548 4220 4.777896 AGGTCACCATTTACAGAAGCTAGA 59.222 41.667 0.00 0.00 0.00 2.43
3602 4277 0.831711 AATGGGTTGTTGGCCAGGAC 60.832 55.000 5.11 2.33 0.00 3.85
3666 4341 4.202141 CCATGTCACTGGTGAACAAATGTT 60.202 41.667 4.92 0.00 41.85 2.71
3851 4527 8.692710 AGGAACGAATATAATACAAGACTGACA 58.307 33.333 0.00 0.00 0.00 3.58
3876 4552 6.398234 ACATTACTGCATAGTACTCTGGAG 57.602 41.667 22.78 22.78 39.06 3.86
3890 4566 5.801947 CCATTACTTGCTGAAACATTACTGC 59.198 40.000 0.00 0.00 0.00 4.40
3904 4580 3.942130 AAAAGGCTGACCATTACTTGC 57.058 42.857 0.00 0.00 39.06 4.01
3905 4581 5.452078 TGAAAAAGGCTGACCATTACTTG 57.548 39.130 0.00 0.00 39.06 3.16
3906 4582 6.670695 AATGAAAAAGGCTGACCATTACTT 57.329 33.333 0.00 0.00 39.06 2.24
3936 4624 9.744468 AGACAAGGTGTATTTTACAATTTCAAC 57.256 29.630 0.00 0.00 40.93 3.18
3939 4627 9.959749 TCAAGACAAGGTGTATTTTACAATTTC 57.040 29.630 0.00 0.00 40.93 2.17
3947 4635 7.595819 TGGAAATCAAGACAAGGTGTATTTT 57.404 32.000 0.00 0.00 28.02 1.82
4006 4694 5.478679 ACAGTAGAGGGATATATGAGTGCAC 59.521 44.000 9.40 9.40 0.00 4.57
4080 4768 5.657302 AGACTAACTATTGGTGACTGGTAGG 59.343 44.000 0.00 0.00 0.00 3.18
4100 4788 2.902486 TCACTCTCTGGCAAATGAGACT 59.098 45.455 14.98 0.00 35.70 3.24
4103 4791 4.763073 TGTATCACTCTCTGGCAAATGAG 58.237 43.478 8.78 8.78 0.00 2.90
4113 4801 9.019656 GTGACCAGATATATTGTATCACTCTCT 57.980 37.037 11.16 0.00 33.92 3.10
4117 4805 8.712228 TGAGTGACCAGATATATTGTATCACT 57.288 34.615 17.01 17.01 46.13 3.41
4141 4829 3.565482 AGGTACAACAGCAGTCACATTTG 59.435 43.478 0.00 0.00 0.00 2.32
4192 4882 6.575162 ACAGACTGGGATTTTGTATTTCAC 57.425 37.500 7.51 0.00 0.00 3.18
4257 4948 3.383620 TGGCATTTTTCACACCATGAC 57.616 42.857 0.00 0.00 36.92 3.06
4259 4950 4.865925 CACTATGGCATTTTTCACACCATG 59.134 41.667 4.78 0.00 41.18 3.66
4260 4951 4.527816 ACACTATGGCATTTTTCACACCAT 59.472 37.500 4.78 0.00 43.42 3.55
4268 4959 4.592778 AGGAACCAACACTATGGCATTTTT 59.407 37.500 4.78 0.00 44.75 1.94
4368 5060 7.669089 ACCTAACATTTGGAAGAAGGAAAAA 57.331 32.000 0.00 0.00 0.00 1.94
4374 5066 8.567285 ACTATCAACCTAACATTTGGAAGAAG 57.433 34.615 0.00 1.55 0.00 2.85
4375 5067 8.934023 AACTATCAACCTAACATTTGGAAGAA 57.066 30.769 0.00 0.00 0.00 2.52
4390 5082 7.229506 AGCTGGCAATAAGATTAACTATCAACC 59.770 37.037 0.00 0.00 35.59 3.77
4391 5083 8.159344 AGCTGGCAATAAGATTAACTATCAAC 57.841 34.615 0.00 0.00 35.59 3.18
4392 5084 7.992608 TGAGCTGGCAATAAGATTAACTATCAA 59.007 33.333 0.00 0.00 35.59 2.57
4393 5085 7.508687 TGAGCTGGCAATAAGATTAACTATCA 58.491 34.615 0.00 0.00 35.59 2.15
4394 5086 7.969536 TGAGCTGGCAATAAGATTAACTATC 57.030 36.000 0.00 0.00 0.00 2.08
4397 5089 9.664332 CTATATGAGCTGGCAATAAGATTAACT 57.336 33.333 0.00 0.00 0.00 2.24
4400 5092 8.260818 GGTCTATATGAGCTGGCAATAAGATTA 58.739 37.037 0.00 0.00 39.86 1.75
4412 5124 4.510711 CAGTTTGCTGGTCTATATGAGCTG 59.489 45.833 0.00 0.00 43.13 4.24
4424 5136 3.209410 CTCAAGAACTCAGTTTGCTGGT 58.791 45.455 0.00 0.00 42.78 4.00
4436 5148 3.391296 TGTGGTTAGGAAGCTCAAGAACT 59.609 43.478 0.00 0.00 30.51 3.01
4465 5177 6.704493 TGAAAAGACACGACAAGCTAAACTAT 59.296 34.615 0.00 0.00 0.00 2.12
4467 5179 4.873827 TGAAAAGACACGACAAGCTAAACT 59.126 37.500 0.00 0.00 0.00 2.66
4468 5180 5.151632 TGAAAAGACACGACAAGCTAAAC 57.848 39.130 0.00 0.00 0.00 2.01
4469 5181 4.873827 ACTGAAAAGACACGACAAGCTAAA 59.126 37.500 0.00 0.00 0.00 1.85
4470 5182 4.439057 ACTGAAAAGACACGACAAGCTAA 58.561 39.130 0.00 0.00 0.00 3.09
4471 5183 4.054780 ACTGAAAAGACACGACAAGCTA 57.945 40.909 0.00 0.00 0.00 3.32
4472 5184 2.906354 ACTGAAAAGACACGACAAGCT 58.094 42.857 0.00 0.00 0.00 3.74
4473 5185 3.354397 CAACTGAAAAGACACGACAAGC 58.646 45.455 0.00 0.00 0.00 4.01
4474 5186 3.354397 GCAACTGAAAAGACACGACAAG 58.646 45.455 0.00 0.00 0.00 3.16
4475 5187 2.096819 GGCAACTGAAAAGACACGACAA 59.903 45.455 0.00 0.00 0.00 3.18
4476 5188 1.668751 GGCAACTGAAAAGACACGACA 59.331 47.619 0.00 0.00 0.00 4.35
4477 5189 2.384899 GGCAACTGAAAAGACACGAC 57.615 50.000 0.00 0.00 0.00 4.34
4503 5215 6.071221 TGAGCAATGGATAAGCAACTGAAAAT 60.071 34.615 0.00 0.00 0.00 1.82
4505 5217 4.766373 TGAGCAATGGATAAGCAACTGAAA 59.234 37.500 0.00 0.00 0.00 2.69
4507 5219 3.954200 TGAGCAATGGATAAGCAACTGA 58.046 40.909 0.00 0.00 0.00 3.41
4510 5222 5.511234 AAGATGAGCAATGGATAAGCAAC 57.489 39.130 0.00 0.00 0.00 4.17
4533 5317 1.613437 GCTAGGCTCAAAACCAGCAAA 59.387 47.619 0.00 0.00 38.77 3.68
4551 5335 1.084289 GGTTCGCCTGTTAATTCGCT 58.916 50.000 0.00 0.00 0.00 4.93
4575 5359 2.582498 CCGTAGCTGCGTACCTGC 60.582 66.667 22.73 5.47 38.55 4.85
4586 5373 4.062293 TCATGTATTTATGTGGCCGTAGC 58.938 43.478 0.00 0.00 38.76 3.58
4640 5427 2.747686 CAGGCCTGGGTACACGTT 59.252 61.111 26.14 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.