Multiple sequence alignment - TraesCS3B01G392400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G392400 chr3B 100.000 2555 0 0 1 2555 617997919 617995365 0.000000e+00 4719.0
1 TraesCS3B01G392400 chr3B 77.551 392 70 12 20 397 754808811 754808424 1.190000e-53 220.0
2 TraesCS3B01G392400 chr3B 96.000 50 2 0 640 689 450376597 450376646 5.860000e-12 82.4
3 TraesCS3B01G392400 chr3D 90.089 1907 101 29 683 2538 464327667 464325798 0.000000e+00 2394.0
4 TraesCS3B01G392400 chr3D 78.474 511 93 11 987 1489 595242687 595242186 4.100000e-83 318.0
5 TraesCS3B01G392400 chr3D 84.000 75 10 2 291 363 482350369 482350295 1.270000e-08 71.3
6 TraesCS3B01G392400 chr3A 89.138 1915 91 34 714 2541 607471162 607469278 0.000000e+00 2276.0
7 TraesCS3B01G392400 chr3A 84.150 612 63 15 1 597 607475645 607475053 1.720000e-156 562.0
8 TraesCS3B01G392400 chr3A 76.763 241 52 2 5 242 711399910 711400149 5.740000e-27 132.0
9 TraesCS3B01G392400 chr2D 78.027 446 90 5 7 446 114815832 114815389 9.010000e-70 274.0
10 TraesCS3B01G392400 chr2B 78.295 387 73 8 13 391 523108340 523107957 3.290000e-59 239.0
11 TraesCS3B01G392400 chr2B 94.118 51 3 0 299 349 656372799 656372749 7.580000e-11 78.7
12 TraesCS3B01G392400 chr2B 89.091 55 5 1 639 692 386535686 386535632 1.640000e-07 67.6
13 TraesCS3B01G392400 chr1B 78.177 362 75 3 24 382 184747938 184747578 7.110000e-56 228.0
14 TraesCS3B01G392400 chr1B 95.833 48 2 0 640 687 156593841 156593794 7.580000e-11 78.7
15 TraesCS3B01G392400 chr6D 82.822 163 25 3 7 166 457646626 457646788 2.650000e-30 143.0
16 TraesCS3B01G392400 chr5B 87.500 96 10 1 60 155 235440313 235440220 2.690000e-20 110.0
17 TraesCS3B01G392400 chr5B 84.416 77 10 2 609 683 194190952 194190876 9.800000e-10 75.0
18 TraesCS3B01G392400 chr5B 92.308 52 3 1 636 686 37056740 37056791 3.530000e-09 73.1
19 TraesCS3B01G392400 chr5B 95.556 45 1 1 645 688 123753412 123753368 1.270000e-08 71.3
20 TraesCS3B01G392400 chr4D 80.488 123 22 2 46 167 455332799 455332678 2.710000e-15 93.5
21 TraesCS3B01G392400 chr7B 95.918 49 2 0 640 688 509514071 509514119 2.110000e-11 80.5
22 TraesCS3B01G392400 chr7A 94.231 52 3 0 640 691 83529721 83529670 2.110000e-11 80.5
23 TraesCS3B01G392400 chr6B 96.000 50 1 1 644 692 125726987 125726938 2.110000e-11 80.5
24 TraesCS3B01G392400 chr6A 77.622 143 25 5 5 143 73369631 73369492 2.110000e-11 80.5
25 TraesCS3B01G392400 chr4A 92.453 53 4 0 640 692 511040531 511040479 2.730000e-10 76.8
26 TraesCS3B01G392400 chr5D 84.416 77 10 2 609 683 150829263 150829339 9.800000e-10 75.0
27 TraesCS3B01G392400 chr5D 85.507 69 6 4 618 686 278465075 278465011 4.560000e-08 69.4
28 TraesCS3B01G392400 chr2A 94.595 37 2 0 636 672 86967062 86967098 9.870000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G392400 chr3B 617995365 617997919 2554 True 4719 4719 100.000 1 2555 1 chr3B.!!$R1 2554
1 TraesCS3B01G392400 chr3D 464325798 464327667 1869 True 2394 2394 90.089 683 2538 1 chr3D.!!$R1 1855
2 TraesCS3B01G392400 chr3D 595242186 595242687 501 True 318 318 78.474 987 1489 1 chr3D.!!$R3 502
3 TraesCS3B01G392400 chr3A 607469278 607475645 6367 True 1419 2276 86.644 1 2541 2 chr3A.!!$R1 2540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 489 0.025001 CGTGCGCTTAATCTTGTCGG 59.975 55.0 9.73 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2433 6332 0.740516 GCTTCACTCTCTGCCTGCTC 60.741 60.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.675423 CGACCTCACCTCCACCGA 60.675 66.667 0.00 0.00 0.00 4.69
45 46 2.477845 CGACGACGGCTAGTTCGT 59.522 61.111 13.72 13.72 44.03 3.85
53 54 1.592400 CGGCTAGTTCGTGGACTCCA 61.592 60.000 0.00 0.00 0.00 3.86
77 81 1.742768 GAGTAGGGCATGGGAGACG 59.257 63.158 0.00 0.00 0.00 4.18
79 83 2.064581 GTAGGGCATGGGAGACGGT 61.065 63.158 0.00 0.00 0.00 4.83
83 87 4.408821 GCATGGGAGACGGTGGCA 62.409 66.667 0.00 0.00 0.00 4.92
94 98 2.044946 GGTGGCACCTCATGTCCC 60.045 66.667 29.22 0.00 34.73 4.46
95 99 2.756400 GTGGCACCTCATGTCCCA 59.244 61.111 6.29 0.00 28.68 4.37
96 100 1.304282 GTGGCACCTCATGTCCCAT 59.696 57.895 6.29 0.00 28.68 4.00
112 116 1.600636 CATGTGGGCCAGTTCGTGT 60.601 57.895 6.40 0.00 0.00 4.49
123 127 1.548719 CAGTTCGTGTCCCATGTCCTA 59.451 52.381 0.00 0.00 0.00 2.94
166 170 0.539051 CTTCACTTCCCGAGGCTCAT 59.461 55.000 15.95 0.00 0.00 2.90
168 172 0.614697 TCACTTCCCGAGGCTCATGA 60.615 55.000 15.95 7.10 0.00 3.07
195 199 0.914417 ACATGGACACGGAGGGGAAT 60.914 55.000 0.00 0.00 0.00 3.01
202 206 3.390311 GGACACGGAGGGGAATAATAAGT 59.610 47.826 0.00 0.00 0.00 2.24
213 217 7.746703 AGGGGAATAATAAGTACTTGGATGAC 58.253 38.462 18.56 5.86 0.00 3.06
214 218 6.649557 GGGGAATAATAAGTACTTGGATGACG 59.350 42.308 18.56 0.00 0.00 4.35
247 251 5.597594 CGGAGATTTAGACTAGGTTAGGGTT 59.402 44.000 0.00 0.00 0.00 4.11
248 252 6.097981 CGGAGATTTAGACTAGGTTAGGGTTT 59.902 42.308 0.00 0.00 0.00 3.27
250 254 7.196637 AGATTTAGACTAGGTTAGGGTTTGG 57.803 40.000 0.00 0.00 0.00 3.28
252 256 6.364568 TTTAGACTAGGTTAGGGTTTGGAC 57.635 41.667 0.00 0.00 0.00 4.02
266 270 4.033129 GGGTTTGGACGCTTTTGTTTAAAC 59.967 41.667 11.54 11.54 35.94 2.01
271 275 3.238798 GGACGCTTTTGTTTAAACGTGTG 59.761 43.478 13.45 11.30 38.42 3.82
272 276 3.824151 ACGCTTTTGTTTAAACGTGTGT 58.176 36.364 13.45 11.84 37.38 3.72
273 277 3.847457 ACGCTTTTGTTTAAACGTGTGTC 59.153 39.130 13.45 1.03 37.38 3.67
274 278 3.063029 CGCTTTTGTTTAAACGTGTGTCG 60.063 43.478 13.45 8.60 46.00 4.35
278 282 6.398726 GCTTTTGTTTAAACGTGTGTCGAAAA 60.399 34.615 13.45 10.23 42.86 2.29
279 283 7.564044 TTTTGTTTAAACGTGTGTCGAAAAT 57.436 28.000 13.45 0.00 42.86 1.82
280 284 8.665175 TTTTGTTTAAACGTGTGTCGAAAATA 57.335 26.923 13.45 0.00 42.86 1.40
281 285 8.838452 TTTGTTTAAACGTGTGTCGAAAATAT 57.162 26.923 13.45 0.00 42.86 1.28
294 301 7.544915 TGTGTCGAAAATATAATGAACGTGGTA 59.455 33.333 0.00 0.00 0.00 3.25
332 339 3.119173 TCATCCGGTTTGCATGAAAATCC 60.119 43.478 1.18 5.08 0.00 3.01
333 340 2.524306 TCCGGTTTGCATGAAAATCCT 58.476 42.857 1.18 0.00 0.00 3.24
335 342 2.417243 CCGGTTTGCATGAAAATCCTCC 60.417 50.000 1.18 0.00 0.00 4.30
344 351 5.163561 TGCATGAAAATCCTCCGGTTTATTC 60.164 40.000 0.00 1.07 0.00 1.75
347 354 6.902771 TGAAAATCCTCCGGTTTATTCAAA 57.097 33.333 0.00 0.00 0.00 2.69
371 378 3.425625 CCCGTTTGAAATGTATGTGGACG 60.426 47.826 0.00 0.00 0.00 4.79
385 392 1.804326 GGACGTGGTTCGATGACCG 60.804 63.158 0.00 0.00 42.83 4.79
397 404 0.237761 GATGACCGACTCCCGTATCG 59.762 60.000 0.00 0.00 38.08 2.92
402 409 0.171903 CCGACTCCCGTATCGTTGTT 59.828 55.000 0.00 0.00 36.60 2.83
405 412 2.479049 CGACTCCCGTATCGTTGTTCAT 60.479 50.000 0.00 0.00 33.63 2.57
406 413 3.242837 CGACTCCCGTATCGTTGTTCATA 60.243 47.826 0.00 0.00 33.63 2.15
408 415 3.067742 ACTCCCGTATCGTTGTTCATAGG 59.932 47.826 0.00 0.00 0.00 2.57
414 421 1.074319 TCGTTGTTCATAGGCGCGTC 61.074 55.000 5.57 0.21 0.00 5.19
416 423 1.017177 GTTGTTCATAGGCGCGTCCA 61.017 55.000 19.30 1.08 37.29 4.02
418 425 0.809636 TGTTCATAGGCGCGTCCATG 60.810 55.000 13.09 13.09 37.29 3.66
429 436 1.267334 CGCGTCCATGAACAAATACCG 60.267 52.381 0.00 0.00 0.00 4.02
430 437 1.531058 GCGTCCATGAACAAATACCGC 60.531 52.381 0.00 0.00 0.00 5.68
434 441 2.948979 TCCATGAACAAATACCGCATCC 59.051 45.455 0.00 0.00 0.00 3.51
444 451 2.675075 CCGCATCCGTTTTGGGGT 60.675 61.111 4.91 0.00 41.08 4.95
445 452 2.696759 CCGCATCCGTTTTGGGGTC 61.697 63.158 4.91 0.00 41.08 4.46
447 454 1.605165 GCATCCGTTTTGGGGTCCA 60.605 57.895 0.00 0.00 38.76 4.02
448 455 1.595093 GCATCCGTTTTGGGGTCCAG 61.595 60.000 0.00 0.00 38.76 3.86
450 457 0.328258 ATCCGTTTTGGGGTCCAGAG 59.672 55.000 0.00 0.00 38.76 3.35
460 474 0.108756 GGGTCCAGAGTAAGTCGTGC 60.109 60.000 0.00 0.00 0.00 5.34
474 488 0.989164 TCGTGCGCTTAATCTTGTCG 59.011 50.000 9.73 0.00 0.00 4.35
475 489 0.025001 CGTGCGCTTAATCTTGTCGG 59.975 55.000 9.73 0.00 0.00 4.79
500 514 0.308684 CCGCTCGCATGTGCATTATT 59.691 50.000 0.00 0.00 42.21 1.40
505 519 4.350346 GCTCGCATGTGCATTATTTTGTA 58.650 39.130 0.00 0.00 42.21 2.41
506 520 4.438797 GCTCGCATGTGCATTATTTTGTAG 59.561 41.667 0.00 0.00 42.21 2.74
507 521 4.919206 TCGCATGTGCATTATTTTGTAGG 58.081 39.130 0.00 0.00 42.21 3.18
509 523 4.370917 GCATGTGCATTATTTTGTAGGGG 58.629 43.478 0.00 0.00 41.59 4.79
510 524 4.141959 GCATGTGCATTATTTTGTAGGGGT 60.142 41.667 0.00 0.00 41.59 4.95
511 525 5.068460 GCATGTGCATTATTTTGTAGGGGTA 59.932 40.000 0.00 0.00 41.59 3.69
512 526 6.239289 GCATGTGCATTATTTTGTAGGGGTAT 60.239 38.462 0.00 0.00 41.59 2.73
513 527 7.686615 GCATGTGCATTATTTTGTAGGGGTATT 60.687 37.037 0.00 0.00 41.59 1.89
514 528 7.106439 TGTGCATTATTTTGTAGGGGTATTG 57.894 36.000 0.00 0.00 0.00 1.90
515 529 6.665680 TGTGCATTATTTTGTAGGGGTATTGT 59.334 34.615 0.00 0.00 0.00 2.71
534 548 8.024865 GGTATTGTAACATTAGTTGAAACCACC 58.975 37.037 0.00 0.00 38.69 4.61
535 549 7.589958 ATTGTAACATTAGTTGAAACCACCA 57.410 32.000 0.00 0.00 38.69 4.17
541 555 6.512297 ACATTAGTTGAAACCACCATTTGTC 58.488 36.000 0.00 0.00 0.00 3.18
544 558 5.612725 AGTTGAAACCACCATTTGTCAAT 57.387 34.783 0.00 0.00 0.00 2.57
590 604 1.569030 ATGCATGTGAGTGGAGGCCT 61.569 55.000 3.86 3.86 0.00 5.19
592 606 1.153489 CATGTGAGTGGAGGCCTCG 60.153 63.158 26.36 5.37 0.00 4.63
597 611 4.479993 AGTGGAGGCCTCGCATGC 62.480 66.667 26.36 12.65 0.00 4.06
599 613 4.032452 TGGAGGCCTCGCATGCAA 62.032 61.111 26.36 0.00 37.78 4.08
601 615 2.124983 GAGGCCTCGCATGCAAGA 60.125 61.111 19.06 6.81 0.00 3.02
602 616 1.525535 GAGGCCTCGCATGCAAGAT 60.526 57.895 19.06 0.00 0.00 2.40
603 617 1.783031 GAGGCCTCGCATGCAAGATG 61.783 60.000 19.06 6.03 0.00 2.90
604 618 2.117156 GGCCTCGCATGCAAGATGT 61.117 57.895 19.57 0.00 0.00 3.06
605 619 1.660560 GGCCTCGCATGCAAGATGTT 61.661 55.000 19.57 0.00 0.00 2.71
606 620 0.171903 GCCTCGCATGCAAGATGTTT 59.828 50.000 19.57 0.00 0.00 2.83
609 623 2.512885 CTCGCATGCAAGATGTTTCAC 58.487 47.619 19.57 0.00 0.00 3.18
610 624 2.153645 TCGCATGCAAGATGTTTCACT 58.846 42.857 19.57 0.00 0.00 3.41
614 628 4.556135 CGCATGCAAGATGTTTCACTAAAG 59.444 41.667 19.57 0.00 0.00 1.85
615 629 5.464168 GCATGCAAGATGTTTCACTAAAGT 58.536 37.500 14.21 0.00 0.00 2.66
616 630 5.344128 GCATGCAAGATGTTTCACTAAAGTG 59.656 40.000 14.21 3.64 46.91 3.16
617 631 5.437289 TGCAAGATGTTTCACTAAAGTGG 57.563 39.130 10.11 0.00 45.65 4.00
618 632 4.887071 TGCAAGATGTTTCACTAAAGTGGT 59.113 37.500 10.11 0.00 45.65 4.16
619 633 5.215160 GCAAGATGTTTCACTAAAGTGGTG 58.785 41.667 10.11 0.00 45.65 4.17
621 635 6.294176 GCAAGATGTTTCACTAAAGTGGTGAT 60.294 38.462 10.11 0.00 45.65 3.06
622 636 7.301054 CAAGATGTTTCACTAAAGTGGTGATC 58.699 38.462 10.11 7.09 45.65 2.92
623 637 6.773638 AGATGTTTCACTAAAGTGGTGATCT 58.226 36.000 10.11 8.86 45.65 2.75
624 638 7.907389 AGATGTTTCACTAAAGTGGTGATCTA 58.093 34.615 10.11 0.00 45.65 1.98
625 639 8.375506 AGATGTTTCACTAAAGTGGTGATCTAA 58.624 33.333 10.11 0.00 45.65 2.10
627 641 8.149973 TGTTTCACTAAAGTGGTGATCTAAAC 57.850 34.615 10.11 10.92 45.65 2.01
639 653 4.526970 GTGATCTAAACCATCACCACCAT 58.473 43.478 1.98 0.00 43.01 3.55
640 654 5.680619 GTGATCTAAACCATCACCACCATA 58.319 41.667 1.98 0.00 43.01 2.74
641 655 6.119536 GTGATCTAAACCATCACCACCATAA 58.880 40.000 1.98 0.00 43.01 1.90
642 656 6.772716 GTGATCTAAACCATCACCACCATAAT 59.227 38.462 1.98 0.00 43.01 1.28
644 658 6.073447 TCTAAACCATCACCACCATAATGT 57.927 37.500 0.00 0.00 0.00 2.71
646 660 7.279615 TCTAAACCATCACCACCATAATGTAG 58.720 38.462 0.00 0.00 0.00 2.74
647 661 5.450818 AACCATCACCACCATAATGTAGT 57.549 39.130 0.00 0.00 0.00 2.73
648 662 4.780815 ACCATCACCACCATAATGTAGTG 58.219 43.478 0.00 0.00 0.00 2.74
649 663 4.473196 ACCATCACCACCATAATGTAGTGA 59.527 41.667 0.00 0.00 38.49 3.41
650 664 5.132648 ACCATCACCACCATAATGTAGTGAT 59.867 40.000 0.00 0.00 43.73 3.06
651 665 5.702670 CCATCACCACCATAATGTAGTGATC 59.297 44.000 2.91 0.00 41.66 2.92
652 666 6.464892 CCATCACCACCATAATGTAGTGATCT 60.465 42.308 2.91 0.00 41.66 2.75
657 671 7.768582 CACCACCATAATGTAGTGATCTAAACA 59.231 37.037 0.00 0.00 33.21 2.83
658 672 7.769044 ACCACCATAATGTAGTGATCTAAACAC 59.231 37.037 0.00 0.00 38.38 3.32
660 674 9.035607 CACCATAATGTAGTGATCTAAACACTC 57.964 37.037 0.00 0.00 45.58 3.51
661 675 8.982723 ACCATAATGTAGTGATCTAAACACTCT 58.017 33.333 0.00 0.00 45.58 3.24
679 693 9.442047 AAACACTCTTATATTTCTTCACAGAGG 57.558 33.333 0.00 0.00 32.21 3.69
680 694 7.560368 ACACTCTTATATTTCTTCACAGAGGG 58.440 38.462 0.00 0.00 36.55 4.30
681 695 7.400339 ACACTCTTATATTTCTTCACAGAGGGA 59.600 37.037 2.59 0.00 34.50 4.20
700 1399 5.615289 AGGGAGTACATGCTAGCAATTAAG 58.385 41.667 23.54 11.70 0.00 1.85
729 4517 1.203523 GTCGTCAAGCCACAGAGAGAT 59.796 52.381 0.00 0.00 0.00 2.75
767 4558 6.911250 AACGAAATTAAAGAGTTTCCCCAT 57.089 33.333 0.00 0.00 32.14 4.00
778 4569 1.279846 GTTTCCCCATCCTACCGTTCA 59.720 52.381 0.00 0.00 0.00 3.18
802 4593 1.080298 GCCAACTGCAATGCCTCAC 60.080 57.895 1.53 0.00 40.77 3.51
805 4596 1.342174 CCAACTGCAATGCCTCACTTT 59.658 47.619 1.53 0.00 0.00 2.66
869 4662 5.222379 ACCTAACCTACTTGTCTCTCCTCTT 60.222 44.000 0.00 0.00 0.00 2.85
961 4780 3.016736 GCATACAGGCCACACTACAAAT 58.983 45.455 5.01 0.00 0.00 2.32
974 4793 4.126437 CACTACAAATCACACTCCACACA 58.874 43.478 0.00 0.00 0.00 3.72
978 4797 2.945008 CAAATCACACTCCACACACACT 59.055 45.455 0.00 0.00 0.00 3.55
1020 4839 2.273449 GATGCTGGTGGAGGTGGG 59.727 66.667 0.00 0.00 0.00 4.61
1497 5322 2.125350 CTGCTCTTCGTGCCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
1510 5335 1.975327 CCCCTCTGCGTCTTCTTCA 59.025 57.895 0.00 0.00 0.00 3.02
1563 5390 3.589735 TGGTAGCCCTTTGATTCCTACAA 59.410 43.478 0.00 0.00 32.17 2.41
1565 5392 4.398358 GGTAGCCCTTTGATTCCTACAAAC 59.602 45.833 0.00 0.00 34.30 2.93
1574 5401 8.285394 CCTTTGATTCCTACAAACATATCGATG 58.715 37.037 8.54 0.00 39.16 3.84
1696 5534 4.438744 GGTTAATTGGTGTACATGCTGCTC 60.439 45.833 0.00 0.00 0.00 4.26
1725 5568 3.672767 TGCTAGATCGATGCATGATGT 57.327 42.857 2.46 8.80 0.00 3.06
1726 5569 3.323243 TGCTAGATCGATGCATGATGTG 58.677 45.455 2.46 3.39 0.00 3.21
1745 5590 2.551459 GTGCATATGGTTGGAGATGAGC 59.449 50.000 4.56 0.00 0.00 4.26
1749 5594 2.359981 ATGGTTGGAGATGAGCATGG 57.640 50.000 0.00 0.00 33.16 3.66
1862 5735 5.062183 GTGTTTGTGGCTTGTTTTCTTCTTC 59.938 40.000 0.00 0.00 0.00 2.87
1863 5736 5.047377 TGTTTGTGGCTTGTTTTCTTCTTCT 60.047 36.000 0.00 0.00 0.00 2.85
1866 5739 6.767524 TGTGGCTTGTTTTCTTCTTCTTTA 57.232 33.333 0.00 0.00 0.00 1.85
1868 5741 7.781056 TGTGGCTTGTTTTCTTCTTCTTTATT 58.219 30.769 0.00 0.00 0.00 1.40
1869 5742 8.257306 TGTGGCTTGTTTTCTTCTTCTTTATTT 58.743 29.630 0.00 0.00 0.00 1.40
1870 5743 9.098355 GTGGCTTGTTTTCTTCTTCTTTATTTT 57.902 29.630 0.00 0.00 0.00 1.82
1904 5777 5.386810 TGATGAAAATTTTGCGTTGTGTG 57.613 34.783 8.47 0.00 0.00 3.82
1905 5778 4.867047 TGATGAAAATTTTGCGTTGTGTGT 59.133 33.333 8.47 0.00 0.00 3.72
1906 5779 4.831741 TGAAAATTTTGCGTTGTGTGTC 57.168 36.364 8.47 0.00 0.00 3.67
1907 5780 4.237724 TGAAAATTTTGCGTTGTGTGTCA 58.762 34.783 8.47 0.00 0.00 3.58
1976 5854 4.569162 TCAGTTTTGTGTTACTGAAGGTCG 59.431 41.667 0.00 0.00 45.60 4.79
1977 5855 4.569162 CAGTTTTGTGTTACTGAAGGTCGA 59.431 41.667 0.00 0.00 43.45 4.20
1978 5856 4.809426 AGTTTTGTGTTACTGAAGGTCGAG 59.191 41.667 0.00 0.00 0.00 4.04
1979 5857 4.395959 TTTGTGTTACTGAAGGTCGAGT 57.604 40.909 0.00 0.00 0.00 4.18
1980 5858 5.518848 TTTGTGTTACTGAAGGTCGAGTA 57.481 39.130 0.00 0.00 0.00 2.59
1981 5859 4.494350 TGTGTTACTGAAGGTCGAGTAC 57.506 45.455 0.00 0.00 0.00 2.73
1982 5860 3.058708 TGTGTTACTGAAGGTCGAGTACG 60.059 47.826 0.00 0.00 41.26 3.67
2067 5948 1.578583 AAACGACCGGACTTGAACAG 58.421 50.000 9.46 0.00 0.00 3.16
2068 5949 0.748450 AACGACCGGACTTGAACAGA 59.252 50.000 9.46 0.00 0.00 3.41
2074 5955 0.949105 CGGACTTGAACAGAACCGGG 60.949 60.000 6.32 0.00 40.02 5.73
2079 5960 0.821711 TTGAACAGAACCGGGCTTGG 60.822 55.000 6.32 0.00 0.00 3.61
2084 5965 2.044946 GAACCGGGCTTGGCTCAT 60.045 61.111 6.32 0.00 0.00 2.90
2115 5996 1.123077 ATATTGACGCAGGGCAGAGA 58.877 50.000 0.00 0.00 0.00 3.10
2143 6027 5.220739 GCAGTAGTTTTCATGCAGTAGATGG 60.221 44.000 0.00 0.00 38.54 3.51
2286 6179 1.590610 GCCAGACAGCGAGACAGAGA 61.591 60.000 0.00 0.00 0.00 3.10
2292 6185 1.003812 ACAGCGAGACAGAGACCTAGT 59.996 52.381 0.00 0.00 0.00 2.57
2345 6238 4.611310 TTGTGCTAGCTAGTACTGTACG 57.389 45.455 32.97 5.17 39.30 3.67
2346 6239 2.353889 TGTGCTAGCTAGTACTGTACGC 59.646 50.000 32.97 17.55 39.30 4.42
2490 6389 1.353103 GAGTGGCGCATGTGCATAC 59.647 57.895 30.73 26.22 42.21 2.39
2503 6402 2.889678 TGTGCATACATCCAAAAGTGCA 59.110 40.909 0.00 0.00 39.94 4.57
2517 6416 2.114638 GTGCAACTTGACCCAGCAA 58.885 52.632 0.00 0.00 36.91 3.91
2538 6437 5.690409 GCAAATATGGCAACTCATCTTCATG 59.310 40.000 0.00 0.00 37.61 3.07
2540 6439 1.466856 TGGCAACTCATCTTCATGGC 58.533 50.000 0.00 0.00 37.12 4.40
2541 6440 1.272037 TGGCAACTCATCTTCATGGCA 60.272 47.619 0.00 0.00 43.18 4.92
2542 6441 1.133790 GGCAACTCATCTTCATGGCAC 59.866 52.381 0.00 0.00 36.65 5.01
2543 6442 2.089980 GCAACTCATCTTCATGGCACT 58.910 47.619 0.00 0.00 0.00 4.40
2544 6443 2.159421 GCAACTCATCTTCATGGCACTG 60.159 50.000 0.00 0.00 0.00 3.66
2545 6444 3.079578 CAACTCATCTTCATGGCACTGT 58.920 45.455 0.00 0.00 0.00 3.55
2546 6445 3.430042 ACTCATCTTCATGGCACTGTT 57.570 42.857 0.00 0.00 0.00 3.16
2547 6446 3.759581 ACTCATCTTCATGGCACTGTTT 58.240 40.909 0.00 0.00 0.00 2.83
2548 6447 3.504906 ACTCATCTTCATGGCACTGTTTG 59.495 43.478 0.00 0.00 0.00 2.93
2549 6448 2.821378 TCATCTTCATGGCACTGTTTGG 59.179 45.455 0.00 0.00 0.00 3.28
2550 6449 2.655090 TCTTCATGGCACTGTTTGGA 57.345 45.000 0.00 0.00 0.00 3.53
2551 6450 3.159213 TCTTCATGGCACTGTTTGGAT 57.841 42.857 0.00 0.00 0.00 3.41
2552 6451 4.299586 TCTTCATGGCACTGTTTGGATA 57.700 40.909 0.00 0.00 0.00 2.59
2553 6452 4.009675 TCTTCATGGCACTGTTTGGATAC 58.990 43.478 0.00 0.00 0.00 2.24
2554 6453 3.719268 TCATGGCACTGTTTGGATACT 57.281 42.857 0.00 0.00 37.61 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.906824 GGTGGAGGTGAGGTCGACA 60.907 63.158 18.91 0.00 0.00 4.35
30 31 1.968017 TCCACGAACTAGCCGTCGT 60.968 57.895 10.07 10.07 38.29 4.34
36 37 1.711206 GTTGGAGTCCACGAACTAGC 58.289 55.000 12.69 0.00 30.78 3.42
38 39 1.538512 CTCGTTGGAGTCCACGAACTA 59.461 52.381 26.15 10.88 36.93 2.24
41 42 0.824595 TCCTCGTTGGAGTCCACGAA 60.825 55.000 26.15 16.16 40.56 3.85
53 54 1.338136 CCCATGCCCTACTCCTCGTT 61.338 60.000 0.00 0.00 0.00 3.85
61 65 2.064581 ACCGTCTCCCATGCCCTAC 61.065 63.158 0.00 0.00 0.00 3.18
94 98 1.577328 GACACGAACTGGCCCACATG 61.577 60.000 0.00 0.00 0.00 3.21
95 99 1.302511 GACACGAACTGGCCCACAT 60.303 57.895 0.00 0.00 0.00 3.21
96 100 2.110213 GACACGAACTGGCCCACA 59.890 61.111 0.00 0.00 0.00 4.17
112 116 2.687014 CGAGGAAGAGTAGGACATGGGA 60.687 54.545 0.00 0.00 0.00 4.37
123 127 2.359602 TCGTCGGCGAGGAAGAGT 60.360 61.111 27.63 0.00 42.81 3.24
166 170 2.047655 GTCCATGTTCGGCGGTCA 60.048 61.111 7.21 7.25 0.00 4.02
168 172 2.358247 GTGTCCATGTTCGGCGGT 60.358 61.111 7.21 0.00 0.00 5.68
175 179 1.131303 TTCCCCTCCGTGTCCATGTT 61.131 55.000 0.00 0.00 0.00 2.71
195 199 4.500205 CGCCCGTCATCCAAGTACTTATTA 60.500 45.833 8.04 0.00 0.00 0.98
202 206 2.185867 GCGCCCGTCATCCAAGTA 59.814 61.111 0.00 0.00 0.00 2.24
222 226 4.022155 CCCTAACCTAGTCTAAATCTCCGC 60.022 50.000 0.00 0.00 0.00 5.54
247 251 3.852536 CACGTTTAAACAAAAGCGTCCAA 59.147 39.130 18.07 0.00 34.69 3.53
248 252 3.119919 ACACGTTTAAACAAAAGCGTCCA 60.120 39.130 18.07 0.00 34.69 4.02
250 254 3.847457 ACACACGTTTAAACAAAAGCGTC 59.153 39.130 18.07 0.00 34.69 5.19
252 256 3.063029 CGACACACGTTTAAACAAAAGCG 60.063 43.478 18.07 9.85 37.22 4.68
255 259 6.981379 TTTTCGACACACGTTTAAACAAAA 57.019 29.167 18.07 10.88 43.13 2.44
266 270 6.404060 CACGTTCATTATATTTTCGACACACG 59.596 38.462 0.00 0.00 44.09 4.49
271 275 9.365311 CAATACCACGTTCATTATATTTTCGAC 57.635 33.333 0.00 0.00 0.00 4.20
272 276 9.100554 ACAATACCACGTTCATTATATTTTCGA 57.899 29.630 0.00 0.00 0.00 3.71
273 277 9.710979 AACAATACCACGTTCATTATATTTTCG 57.289 29.630 0.00 0.00 0.00 3.46
311 318 3.119029 AGGATTTTCATGCAAACCGGATG 60.119 43.478 9.46 8.22 44.44 3.51
332 339 3.275999 ACGGGATTTGAATAAACCGGAG 58.724 45.455 9.46 0.00 38.83 4.63
333 340 3.353370 ACGGGATTTGAATAAACCGGA 57.647 42.857 9.46 0.00 38.83 5.14
347 354 4.398044 GTCCACATACATTTCAAACGGGAT 59.602 41.667 0.00 0.00 0.00 3.85
366 373 1.290955 GGTCATCGAACCACGTCCA 59.709 57.895 1.23 0.00 43.13 4.02
385 392 2.642139 TGAACAACGATACGGGAGTC 57.358 50.000 0.00 0.00 45.66 3.36
397 404 1.017177 TGGACGCGCCTATGAACAAC 61.017 55.000 18.14 0.00 37.63 3.32
402 409 0.529773 GTTCATGGACGCGCCTATGA 60.530 55.000 16.98 16.98 37.63 2.15
405 412 0.320858 TTTGTTCATGGACGCGCCTA 60.321 50.000 18.14 0.38 37.63 3.93
406 413 0.960364 ATTTGTTCATGGACGCGCCT 60.960 50.000 18.14 0.00 37.63 5.52
408 415 1.531058 GGTATTTGTTCATGGACGCGC 60.531 52.381 5.73 0.00 0.00 6.86
414 421 2.286950 CGGATGCGGTATTTGTTCATGG 60.287 50.000 0.00 0.00 0.00 3.66
416 423 2.639065 ACGGATGCGGTATTTGTTCAT 58.361 42.857 12.44 0.00 0.00 2.57
418 425 3.481112 AAACGGATGCGGTATTTGTTC 57.519 42.857 12.44 0.00 0.00 3.18
429 436 1.595093 CTGGACCCCAAAACGGATGC 61.595 60.000 0.00 0.00 36.56 3.91
430 437 0.037590 TCTGGACCCCAAAACGGATG 59.962 55.000 0.00 0.00 36.56 3.51
434 441 2.224450 ACTTACTCTGGACCCCAAAACG 60.224 50.000 0.00 0.00 30.80 3.60
444 451 1.211969 GCGCACGACTTACTCTGGA 59.788 57.895 0.30 0.00 0.00 3.86
445 452 0.388649 AAGCGCACGACTTACTCTGG 60.389 55.000 11.47 0.00 0.00 3.86
447 454 3.128938 AGATTAAGCGCACGACTTACTCT 59.871 43.478 11.47 5.31 35.79 3.24
448 455 3.436496 AGATTAAGCGCACGACTTACTC 58.564 45.455 11.47 2.87 32.40 2.59
450 457 3.367025 ACAAGATTAAGCGCACGACTTAC 59.633 43.478 11.47 0.00 29.52 2.34
460 474 3.489785 GGTACATCCGACAAGATTAAGCG 59.510 47.826 0.00 0.00 0.00 4.68
474 488 1.227263 ACATGCGAGCGGTACATCC 60.227 57.895 0.00 0.00 0.00 3.51
475 489 1.927210 CACATGCGAGCGGTACATC 59.073 57.895 0.00 0.00 0.00 3.06
500 514 9.233649 CAACTAATGTTACAATACCCCTACAAA 57.766 33.333 0.00 0.00 34.60 2.83
505 519 7.395206 GGTTTCAACTAATGTTACAATACCCCT 59.605 37.037 0.00 0.00 34.60 4.79
506 520 7.177041 TGGTTTCAACTAATGTTACAATACCCC 59.823 37.037 0.00 0.00 34.60 4.95
507 521 8.024865 GTGGTTTCAACTAATGTTACAATACCC 58.975 37.037 0.00 0.00 34.60 3.69
509 523 8.569641 TGGTGGTTTCAACTAATGTTACAATAC 58.430 33.333 0.00 0.00 34.60 1.89
510 524 8.693120 TGGTGGTTTCAACTAATGTTACAATA 57.307 30.769 0.00 0.00 34.60 1.90
511 525 7.589958 TGGTGGTTTCAACTAATGTTACAAT 57.410 32.000 0.00 0.00 34.60 2.71
512 526 7.589958 ATGGTGGTTTCAACTAATGTTACAA 57.410 32.000 0.00 0.00 34.60 2.41
513 527 7.589958 AATGGTGGTTTCAACTAATGTTACA 57.410 32.000 0.00 0.00 34.60 2.41
514 528 7.923878 ACAAATGGTGGTTTCAACTAATGTTAC 59.076 33.333 0.00 0.00 34.60 2.50
515 529 8.012957 ACAAATGGTGGTTTCAACTAATGTTA 57.987 30.769 0.00 0.00 34.60 2.41
521 535 6.723298 ATTGACAAATGGTGGTTTCAACTA 57.277 33.333 0.00 0.00 0.00 2.24
523 537 6.758886 TGTTATTGACAAATGGTGGTTTCAAC 59.241 34.615 0.00 0.00 34.69 3.18
553 567 7.850492 CACATGCATGCATATTTCAAGATTTTG 59.150 33.333 31.73 18.14 34.91 2.44
554 568 7.766738 TCACATGCATGCATATTTCAAGATTTT 59.233 29.630 31.73 3.67 34.91 1.82
555 569 7.269316 TCACATGCATGCATATTTCAAGATTT 58.731 30.769 31.73 4.16 34.91 2.17
560 574 5.344884 CACTCACATGCATGCATATTTCAA 58.655 37.500 31.73 13.55 34.91 2.69
566 580 2.567985 CTCCACTCACATGCATGCATA 58.432 47.619 31.73 16.54 34.91 3.14
590 604 2.153645 AGTGAAACATCTTGCATGCGA 58.846 42.857 14.09 10.84 41.43 5.10
592 606 5.464168 ACTTTAGTGAAACATCTTGCATGC 58.536 37.500 11.82 11.82 41.43 4.06
617 631 3.950397 TGGTGGTGATGGTTTAGATCAC 58.050 45.455 0.00 0.00 46.10 3.06
618 632 4.860802 ATGGTGGTGATGGTTTAGATCA 57.139 40.909 0.00 0.00 0.00 2.92
619 633 6.772716 ACATTATGGTGGTGATGGTTTAGATC 59.227 38.462 0.00 0.00 0.00 2.75
621 635 6.073447 ACATTATGGTGGTGATGGTTTAGA 57.927 37.500 0.00 0.00 0.00 2.10
622 636 7.054124 ACTACATTATGGTGGTGATGGTTTAG 58.946 38.462 0.00 0.00 30.73 1.85
623 637 6.964464 ACTACATTATGGTGGTGATGGTTTA 58.036 36.000 0.00 0.00 30.73 2.01
624 638 5.826643 ACTACATTATGGTGGTGATGGTTT 58.173 37.500 0.00 0.00 30.73 3.27
625 639 5.450818 ACTACATTATGGTGGTGATGGTT 57.549 39.130 0.00 0.00 30.73 3.67
632 646 7.769044 GTGTTTAGATCACTACATTATGGTGGT 59.231 37.037 0.00 0.00 40.15 4.16
633 647 7.987458 AGTGTTTAGATCACTACATTATGGTGG 59.013 37.037 0.00 0.00 43.17 4.61
634 648 8.948631 AGTGTTTAGATCACTACATTATGGTG 57.051 34.615 0.00 0.00 43.17 4.17
635 649 8.982723 AGAGTGTTTAGATCACTACATTATGGT 58.017 33.333 0.00 0.00 44.68 3.55
657 671 7.621683 ACTCCCTCTGTGAAGAAATATAAGAGT 59.378 37.037 0.00 0.00 0.00 3.24
658 672 8.017418 ACTCCCTCTGTGAAGAAATATAAGAG 57.983 38.462 0.00 0.00 0.00 2.85
659 673 7.979786 ACTCCCTCTGTGAAGAAATATAAGA 57.020 36.000 0.00 0.00 0.00 2.10
660 674 8.696374 TGTACTCCCTCTGTGAAGAAATATAAG 58.304 37.037 0.00 0.00 0.00 1.73
661 675 8.603898 TGTACTCCCTCTGTGAAGAAATATAA 57.396 34.615 0.00 0.00 0.00 0.98
663 677 7.504403 CATGTACTCCCTCTGTGAAGAAATAT 58.496 38.462 0.00 0.00 0.00 1.28
665 679 5.738909 CATGTACTCCCTCTGTGAAGAAAT 58.261 41.667 0.00 0.00 0.00 2.17
666 680 4.563580 GCATGTACTCCCTCTGTGAAGAAA 60.564 45.833 0.00 0.00 0.00 2.52
667 681 3.055819 GCATGTACTCCCTCTGTGAAGAA 60.056 47.826 0.00 0.00 0.00 2.52
669 683 2.499289 AGCATGTACTCCCTCTGTGAAG 59.501 50.000 0.00 0.00 0.00 3.02
672 686 2.223923 GCTAGCATGTACTCCCTCTGTG 60.224 54.545 10.63 0.00 0.00 3.66
673 687 2.035632 GCTAGCATGTACTCCCTCTGT 58.964 52.381 10.63 0.00 0.00 3.41
674 688 2.034878 TGCTAGCATGTACTCCCTCTG 58.965 52.381 14.93 0.00 0.00 3.35
675 689 2.461300 TGCTAGCATGTACTCCCTCT 57.539 50.000 14.93 0.00 0.00 3.69
676 690 3.760580 ATTGCTAGCATGTACTCCCTC 57.239 47.619 20.13 0.00 0.00 4.30
678 692 5.368989 ACTTAATTGCTAGCATGTACTCCC 58.631 41.667 20.13 0.00 0.00 4.30
679 693 6.292381 CGAACTTAATTGCTAGCATGTACTCC 60.292 42.308 20.13 4.29 0.00 3.85
680 694 6.641062 CGAACTTAATTGCTAGCATGTACTC 58.359 40.000 20.13 8.68 0.00 2.59
681 695 5.006746 GCGAACTTAATTGCTAGCATGTACT 59.993 40.000 20.13 4.11 0.00 2.73
767 4558 0.108520 GGCGTGAATGAACGGTAGGA 60.109 55.000 2.98 0.00 43.75 2.94
869 4662 3.107601 CAGAGAGGAGTTATTGGTGGGA 58.892 50.000 0.00 0.00 0.00 4.37
940 4745 2.107950 TTGTAGTGTGGCCTGTATGC 57.892 50.000 3.32 0.00 0.00 3.14
943 4748 3.071747 TGTGATTTGTAGTGTGGCCTGTA 59.928 43.478 3.32 0.00 0.00 2.74
961 4780 0.461870 GCAGTGTGTGTGGAGTGTGA 60.462 55.000 0.00 0.00 0.00 3.58
1360 5185 2.416162 GGAAGTAGGTGAAGACGCTGAG 60.416 54.545 0.00 0.00 0.00 3.35
1497 5322 2.349886 GCCTACAATGAAGAAGACGCAG 59.650 50.000 0.00 0.00 0.00 5.18
1696 5534 3.186001 GCATCGATCTAGCATTCCAACAG 59.814 47.826 0.00 0.00 0.00 3.16
1725 5568 2.173143 TGCTCATCTCCAACCATATGCA 59.827 45.455 0.00 0.00 0.00 3.96
1726 5569 2.854963 TGCTCATCTCCAACCATATGC 58.145 47.619 0.00 0.00 0.00 3.14
1727 5570 3.756963 CCATGCTCATCTCCAACCATATG 59.243 47.826 0.00 0.00 0.00 1.78
1730 5573 1.133575 CCCATGCTCATCTCCAACCAT 60.134 52.381 0.00 0.00 0.00 3.55
1734 5579 1.071228 CGATCCCATGCTCATCTCCAA 59.929 52.381 0.00 0.00 0.00 3.53
1736 5581 0.972134 TCGATCCCATGCTCATCTCC 59.028 55.000 0.00 0.00 0.00 3.71
1781 5626 7.938490 TCAAACTAAGCTCCATGCATTCATATA 59.062 33.333 0.00 0.00 45.94 0.86
1787 5632 5.655532 AGAATCAAACTAAGCTCCATGCATT 59.344 36.000 0.00 0.00 45.94 3.56
1870 5743 9.128107 GCAAAATTTTCATCAAACTAATCTCGA 57.872 29.630 0.00 0.00 0.00 4.04
1961 5839 3.058639 ACGTACTCGACCTTCAGTAACAC 60.059 47.826 0.00 0.00 40.62 3.32
1968 5846 3.376234 CCATTAGACGTACTCGACCTTCA 59.624 47.826 0.00 0.00 40.62 3.02
1969 5847 3.376546 ACCATTAGACGTACTCGACCTTC 59.623 47.826 0.00 0.00 40.62 3.46
1970 5848 3.128242 CACCATTAGACGTACTCGACCTT 59.872 47.826 0.00 0.00 40.62 3.50
1973 5851 2.097142 AGCACCATTAGACGTACTCGAC 59.903 50.000 0.00 0.00 40.62 4.20
1974 5852 2.096980 CAGCACCATTAGACGTACTCGA 59.903 50.000 0.00 0.00 40.62 4.04
1976 5854 3.777465 TCAGCACCATTAGACGTACTC 57.223 47.619 0.00 0.00 0.00 2.59
1977 5855 4.530710 TTTCAGCACCATTAGACGTACT 57.469 40.909 0.00 0.00 0.00 2.73
1978 5856 4.630069 ACATTTCAGCACCATTAGACGTAC 59.370 41.667 0.00 0.00 0.00 3.67
1979 5857 4.827692 ACATTTCAGCACCATTAGACGTA 58.172 39.130 0.00 0.00 0.00 3.57
1980 5858 3.674997 ACATTTCAGCACCATTAGACGT 58.325 40.909 0.00 0.00 0.00 4.34
1981 5859 4.437390 GGAACATTTCAGCACCATTAGACG 60.437 45.833 0.00 0.00 0.00 4.18
1982 5860 4.458989 TGGAACATTTCAGCACCATTAGAC 59.541 41.667 0.00 0.00 0.00 2.59
2027 5906 6.246748 CGTTTTGCGTATATTTTTCGTGCTAA 59.753 34.615 0.00 0.00 35.54 3.09
2067 5948 2.044946 ATGAGCCAAGCCCGGTTC 60.045 61.111 0.00 0.00 36.84 3.62
2068 5949 2.361610 CATGAGCCAAGCCCGGTT 60.362 61.111 0.00 0.00 0.00 4.44
2074 5955 3.678717 CTGCACGCATGAGCCAAGC 62.679 63.158 0.00 0.00 37.52 4.01
2079 5960 3.885484 ATATTAACTGCACGCATGAGC 57.115 42.857 0.00 0.00 37.42 4.26
2084 5965 3.649870 CGTCAATATTAACTGCACGCA 57.350 42.857 0.00 0.00 0.00 5.24
2115 5996 2.816087 CTGCATGAAAACTACTGCACCT 59.184 45.455 0.00 0.00 39.54 4.00
2143 6027 4.991687 GCAGCACCCATCTTAGTATCTTAC 59.008 45.833 0.00 0.00 0.00 2.34
2292 6185 1.079405 GCGAGATGGTTGGACCGAA 60.079 57.895 0.00 0.00 42.58 4.30
2345 6238 2.593346 AAGTGACCATCGAGATCAGC 57.407 50.000 0.00 0.00 0.00 4.26
2346 6239 4.578516 AGAGTAAGTGACCATCGAGATCAG 59.421 45.833 0.00 0.00 0.00 2.90
2423 6322 1.004560 TGCCTGCTCGCTATATGCC 60.005 57.895 0.00 0.00 38.78 4.40
2433 6332 0.740516 GCTTCACTCTCTGCCTGCTC 60.741 60.000 0.00 0.00 0.00 4.26
2439 6338 1.803555 GGTTTCAGCTTCACTCTCTGC 59.196 52.381 0.00 0.00 0.00 4.26
2490 6389 3.383761 GGTCAAGTTGCACTTTTGGATG 58.616 45.455 0.00 0.00 36.03 3.51
2503 6402 2.497273 GCCATATTTGCTGGGTCAAGTT 59.503 45.455 0.00 0.00 34.16 2.66
2517 6416 4.280174 GCCATGAAGATGAGTTGCCATATT 59.720 41.667 0.00 0.00 31.43 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.