Multiple sequence alignment - TraesCS3B01G392200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G392200 chr3B 100.000 2822 0 0 1 2822 617885763 617888584 0.000000e+00 5212
1 TraesCS3B01G392200 chr3B 88.090 974 63 28 791 1743 617988002 617988943 0.000000e+00 1107
2 TraesCS3B01G392200 chr3B 80.314 1463 154 75 691 2060 618002010 618003431 0.000000e+00 983
3 TraesCS3B01G392200 chr3B 98.980 196 2 0 2627 2822 617897406 617897601 4.470000e-93 351
4 TraesCS3B01G392200 chr3B 85.978 271 25 5 1917 2185 617994233 617994492 7.700000e-71 278
5 TraesCS3B01G392200 chr3B 87.336 229 22 5 340 566 617987623 617987846 3.610000e-64 255
6 TraesCS3B01G392200 chr3B 82.500 200 18 6 2440 2626 617994490 617994685 2.910000e-35 159
7 TraesCS3B01G392200 chr3B 83.333 162 16 8 1097 1248 617682021 617682181 3.790000e-29 139
8 TraesCS3B01G392200 chr3D 88.862 2092 131 47 5 2046 464315340 464317379 0.000000e+00 2479
9 TraesCS3B01G392200 chr3D 87.143 980 74 30 791 1743 464323597 464324551 0.000000e+00 1064
10 TraesCS3B01G392200 chr3D 85.226 731 63 31 1168 1862 464331134 464331855 0.000000e+00 710
11 TraesCS3B01G392200 chr3D 82.974 464 48 12 1742 2185 464324639 464325091 9.480000e-105 390
12 TraesCS3B01G392200 chr3D 84.672 411 34 15 691 1080 464330621 464331023 1.590000e-102 383
13 TraesCS3B01G392200 chr3D 87.124 233 22 4 335 566 464323250 464323475 1.000000e-64 257
14 TraesCS3B01G392200 chr3D 94.000 150 9 0 1343 1492 464310955 464311104 7.860000e-56 228
15 TraesCS3B01G392200 chr3D 87.417 151 19 0 1593 1743 464311343 464311493 1.040000e-39 174
16 TraesCS3B01G392200 chr3D 85.714 161 13 6 1098 1248 464310630 464310790 8.090000e-36 161
17 TraesCS3B01G392200 chr3A 89.456 1470 88 31 602 2040 607466668 607468101 0.000000e+00 1794
18 TraesCS3B01G392200 chr3A 93.473 858 42 8 1341 2186 607461866 607462721 0.000000e+00 1262
19 TraesCS3B01G392200 chr3A 81.969 1148 130 47 749 1846 607486506 607487626 0.000000e+00 902
20 TraesCS3B01G392200 chr3A 87.553 474 45 9 880 1343 607461257 607461726 1.150000e-148 536
21 TraesCS3B01G392200 chr3A 85.827 254 34 2 2191 2442 65702671 65702418 4.630000e-68 268
22 TraesCS3B01G392200 chr3A 87.137 241 18 5 343 575 607459548 607459783 7.750000e-66 261
23 TraesCS3B01G392200 chr3A 84.586 266 36 4 2181 2443 32142996 32143259 2.790000e-65 259
24 TraesCS3B01G392200 chr3A 88.208 212 16 7 335 545 607465602 607465805 7.810000e-61 244
25 TraesCS3B01G392200 chr4B 98.000 200 4 0 2623 2822 469521852 469522051 5.790000e-92 348
26 TraesCS3B01G392200 chr7B 97.959 196 4 0 2627 2822 88396839 88396644 9.680000e-90 340
27 TraesCS3B01G392200 chr7B 97.449 196 5 0 2627 2822 88430205 88430010 4.500000e-88 335
28 TraesCS3B01G392200 chr7B 95.897 195 7 1 2627 2820 336842723 336842529 5.870000e-82 315
29 TraesCS3B01G392200 chr2B 97.409 193 5 0 2627 2819 766291521 766291713 2.100000e-86 329
30 TraesCS3B01G392200 chr2B 95.431 197 9 0 2626 2822 766279302 766279498 5.870000e-82 315
31 TraesCS3B01G392200 chr6B 96.410 195 7 0 2627 2821 150501281 150501087 3.510000e-84 322
32 TraesCS3B01G392200 chr6B 91.667 72 6 0 1596 1667 159093000 159092929 1.790000e-17 100
33 TraesCS3B01G392200 chr1B 95.918 196 8 0 2627 2822 619077816 619078011 4.540000e-83 318
34 TraesCS3B01G392200 chr5A 87.059 255 29 4 2191 2442 692261438 692261691 4.600000e-73 285
35 TraesCS3B01G392200 chr4A 86.328 256 31 4 2191 2443 410364844 410365098 2.770000e-70 276
36 TraesCS3B01G392200 chr4A 85.992 257 34 2 2191 2445 62950505 62950249 9.960000e-70 274
37 TraesCS3B01G392200 chr4D 84.962 266 36 4 2184 2446 506201335 506201071 1.670000e-67 267
38 TraesCS3B01G392200 chr7A 85.771 253 33 3 2191 2441 618658345 618658596 5.990000e-67 265
39 TraesCS3B01G392200 chr7A 85.433 254 35 2 2191 2442 386622979 386622726 2.160000e-66 263
40 TraesCS3B01G392200 chr7A 84.387 269 39 3 2179 2444 561887978 561888246 7.750000e-66 261


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G392200 chr3B 617885763 617888584 2821 False 5212.000000 5212 100.00000 1 2822 1 chr3B.!!$F2 2821
1 TraesCS3B01G392200 chr3B 618002010 618003431 1421 False 983.000000 983 80.31400 691 2060 1 chr3B.!!$F4 1369
2 TraesCS3B01G392200 chr3B 617987623 617988943 1320 False 681.000000 1107 87.71300 340 1743 2 chr3B.!!$F5 1403
3 TraesCS3B01G392200 chr3D 464310630 464317379 6749 False 760.500000 2479 88.99825 5 2046 4 chr3D.!!$F1 2041
4 TraesCS3B01G392200 chr3D 464323250 464325091 1841 False 570.333333 1064 85.74700 335 2185 3 chr3D.!!$F2 1850
5 TraesCS3B01G392200 chr3D 464330621 464331855 1234 False 546.500000 710 84.94900 691 1862 2 chr3D.!!$F3 1171
6 TraesCS3B01G392200 chr3A 607486506 607487626 1120 False 902.000000 902 81.96900 749 1846 1 chr3A.!!$F2 1097
7 TraesCS3B01G392200 chr3A 607459548 607468101 8553 False 819.400000 1794 89.16540 335 2186 5 chr3A.!!$F3 1851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 4752 0.327924 TGGAGTAGTGGTTGGCATGG 59.672 55.0 0.00 0.0 0.00 3.66 F
302 5009 0.601558 AAACCAGACGAGCTTCGCTA 59.398 50.0 5.63 0.0 45.12 4.26 F
1008 12720 0.744414 AGAGCAATACAATGGCGCGT 60.744 50.0 8.43 0.0 32.39 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1334 13152 0.028505 CCGCATCTGCATTACAGCAC 59.971 55.0 2.72 0.0 46.76 4.40 R
1775 13712 0.393537 CATCCAGCCTCCAACCTGTC 60.394 60.0 0.00 0.0 0.00 3.51 R
2594 14584 0.031817 TACGGTAAGGGGGAAGGAGG 60.032 60.0 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 4726 1.310904 CTAGTCTAGTCCACTCCGGC 58.689 60.000 0.00 0.00 33.14 6.13
21 4728 2.043248 TCTAGTCCACTCCGGCCC 60.043 66.667 0.00 0.00 33.14 5.80
33 4740 4.189188 CGGCCCGACGTGGAGTAG 62.189 72.222 0.00 0.00 42.00 2.57
45 4752 0.327924 TGGAGTAGTGGTTGGCATGG 59.672 55.000 0.00 0.00 0.00 3.66
46 4753 0.618458 GGAGTAGTGGTTGGCATGGA 59.382 55.000 0.00 0.00 0.00 3.41
50 4757 4.319177 GAGTAGTGGTTGGCATGGATATC 58.681 47.826 0.00 0.00 0.00 1.63
52 4759 1.768275 AGTGGTTGGCATGGATATCGA 59.232 47.619 0.00 0.00 0.00 3.59
105 4812 4.097741 CACTGTTTCATGTCCAGGTGAAAA 59.902 41.667 5.49 0.00 43.56 2.29
106 4813 4.097892 ACTGTTTCATGTCCAGGTGAAAAC 59.902 41.667 5.49 3.16 43.56 2.43
121 4828 7.978975 CCAGGTGAAAACTTTTGTTCTTCATTA 59.021 33.333 0.00 0.00 42.67 1.90
132 4839 7.831691 TTTGTTCTTCATTAATCACCCTCAA 57.168 32.000 0.00 0.00 0.00 3.02
137 4844 6.303054 TCTTCATTAATCACCCTCAACAACA 58.697 36.000 0.00 0.00 0.00 3.33
139 4846 7.451255 TCTTCATTAATCACCCTCAACAACAAT 59.549 33.333 0.00 0.00 0.00 2.71
148 4855 3.181477 CCCTCAACAACAATGAACTTGCA 60.181 43.478 0.00 0.00 38.50 4.08
162 4869 4.334203 TGAACTTGCATCGTTACTTTGTGT 59.666 37.500 2.30 0.00 0.00 3.72
168 4875 4.149221 TGCATCGTTACTTTGTGTAAGACG 59.851 41.667 0.00 0.00 41.29 4.18
173 4880 5.229887 TCGTTACTTTGTGTAAGACGTTGTC 59.770 40.000 0.00 0.00 41.29 3.18
178 4885 5.068198 ACTTTGTGTAAGACGTTGTCTCCTA 59.932 40.000 0.00 0.00 42.59 2.94
180 4887 3.057736 TGTGTAAGACGTTGTCTCCTAGC 60.058 47.826 0.00 0.00 42.59 3.42
185 4892 3.093057 AGACGTTGTCTCCTAGCTGATT 58.907 45.455 0.00 0.00 38.71 2.57
189 4896 4.219944 ACGTTGTCTCCTAGCTGATTTACA 59.780 41.667 0.00 0.00 0.00 2.41
214 4921 2.225068 ACAGTGGTTTGTCTCGACAG 57.775 50.000 0.00 0.00 42.94 3.51
221 4928 2.417719 GTTTGTCTCGACAGCCAAGAT 58.582 47.619 0.00 0.00 42.94 2.40
298 5005 8.819643 ATAGATATTAAAACCAGACGAGCTTC 57.180 34.615 0.00 0.00 0.00 3.86
302 5009 0.601558 AAACCAGACGAGCTTCGCTA 59.398 50.000 5.63 0.00 45.12 4.26
331 5038 0.885879 CCAAACGGCCCCTCTTAAAC 59.114 55.000 0.00 0.00 0.00 2.01
332 5039 1.611519 CAAACGGCCCCTCTTAAACA 58.388 50.000 0.00 0.00 0.00 2.83
333 5040 1.957877 CAAACGGCCCCTCTTAAACAA 59.042 47.619 0.00 0.00 0.00 2.83
390 5100 4.263209 CAGATATACGCGAATTCATCCGAC 59.737 45.833 15.93 0.00 0.00 4.79
429 5139 4.379813 CGTTCCTTTCTTCCATTCCATGTG 60.380 45.833 0.00 0.00 0.00 3.21
447 5157 1.925185 GTGACCGCGTAGAGAATTTCC 59.075 52.381 4.92 0.00 0.00 3.13
466 5177 2.626266 TCCTAGACGTCAAAAGAGCACA 59.374 45.455 19.50 0.00 0.00 4.57
576 5291 4.632153 CTCAACCAGTAAAGCACAGTACT 58.368 43.478 0.00 0.00 0.00 2.73
577 5292 5.779922 CTCAACCAGTAAAGCACAGTACTA 58.220 41.667 0.00 0.00 0.00 1.82
578 5293 5.535333 TCAACCAGTAAAGCACAGTACTAC 58.465 41.667 0.00 0.00 0.00 2.73
579 5294 5.303589 TCAACCAGTAAAGCACAGTACTACT 59.696 40.000 0.00 0.00 0.00 2.57
580 5295 5.803237 ACCAGTAAAGCACAGTACTACTT 57.197 39.130 0.00 0.00 0.00 2.24
581 5296 5.539048 ACCAGTAAAGCACAGTACTACTTG 58.461 41.667 0.00 0.00 0.00 3.16
582 5297 4.929808 CCAGTAAAGCACAGTACTACTTGG 59.070 45.833 0.00 0.00 0.00 3.61
583 5298 4.389077 CAGTAAAGCACAGTACTACTTGGC 59.611 45.833 0.00 0.00 0.00 4.52
584 5299 3.485463 AAAGCACAGTACTACTTGGCA 57.515 42.857 0.00 0.00 29.79 4.92
585 5300 3.485463 AAGCACAGTACTACTTGGCAA 57.515 42.857 0.00 0.00 29.79 4.52
586 5301 2.767505 AGCACAGTACTACTTGGCAAC 58.232 47.619 0.00 0.00 29.79 4.17
587 5302 2.368875 AGCACAGTACTACTTGGCAACT 59.631 45.455 0.00 0.00 37.61 3.16
588 5303 3.139077 GCACAGTACTACTTGGCAACTT 58.861 45.455 0.00 0.00 37.61 2.66
589 5304 3.564225 GCACAGTACTACTTGGCAACTTT 59.436 43.478 0.00 0.00 37.61 2.66
590 5305 4.036380 GCACAGTACTACTTGGCAACTTTT 59.964 41.667 0.00 0.00 37.61 2.27
591 5306 5.449999 GCACAGTACTACTTGGCAACTTTTT 60.450 40.000 0.00 0.00 37.61 1.94
612 5327 2.861462 TTTTCGGAAGTTGGCAACTG 57.139 45.000 31.75 19.87 41.91 3.16
893 12594 4.083749 TGAGAACGAAGACGAAAGAGAGAG 60.084 45.833 0.00 0.00 42.66 3.20
895 12596 3.817148 ACGAAGACGAAAGAGAGAGAC 57.183 47.619 0.00 0.00 42.66 3.36
896 12597 3.139850 ACGAAGACGAAAGAGAGAGACA 58.860 45.455 0.00 0.00 42.66 3.41
897 12598 3.187637 ACGAAGACGAAAGAGAGAGACAG 59.812 47.826 0.00 0.00 42.66 3.51
898 12599 3.433957 CGAAGACGAAAGAGAGAGACAGA 59.566 47.826 0.00 0.00 42.66 3.41
899 12600 4.435518 CGAAGACGAAAGAGAGAGACAGAG 60.436 50.000 0.00 0.00 42.66 3.35
900 12601 4.280436 AGACGAAAGAGAGAGACAGAGA 57.720 45.455 0.00 0.00 0.00 3.10
901 12602 4.843728 AGACGAAAGAGAGAGACAGAGAT 58.156 43.478 0.00 0.00 0.00 2.75
1008 12720 0.744414 AGAGCAATACAATGGCGCGT 60.744 50.000 8.43 0.00 32.39 6.01
1017 12729 3.665675 AATGGCGCGTGGTCTCCTC 62.666 63.158 8.43 0.00 0.00 3.71
1035 12747 1.153489 CGAGGTGCATCTGGTCCAG 60.153 63.158 13.21 13.21 0.00 3.86
1249 13009 3.775654 CCGAGGTCAGTCCCTGCC 61.776 72.222 0.00 0.00 34.03 4.85
1279 13057 2.945668 ACACAGCTCTGTTTTCTTGGTC 59.054 45.455 0.00 0.00 42.83 4.02
1330 13142 3.793756 GTTTTGCTGAACGAAACGAAC 57.206 42.857 0.00 0.00 41.62 3.95
1515 13340 0.835941 CTCTACTCCCAGCTGCCAAT 59.164 55.000 8.66 0.00 0.00 3.16
1548 13388 2.989166 GCAGCTAATTGAAGTGGCAAAC 59.011 45.455 3.48 0.00 0.00 2.93
1564 13407 4.142359 TGGCAAACTAAAGACGAAAGCAAA 60.142 37.500 0.00 0.00 0.00 3.68
1751 13688 2.573340 CGCAAAGGTTGATGCCCC 59.427 61.111 0.00 0.00 39.39 5.80
1775 13712 1.338200 CCAGGTTGAAGAAGACGGAGG 60.338 57.143 0.00 0.00 0.00 4.30
1831 13789 0.906066 GAAGGTCTGAGGGTCCTTCC 59.094 60.000 15.57 0.00 46.54 3.46
1846 13804 4.056050 GTCCTTCCGTCGTGCATAATTAT 58.944 43.478 0.00 0.00 0.00 1.28
1868 13832 4.722700 GCTGGATGTGGGCGTGGT 62.723 66.667 0.00 0.00 0.00 4.16
2029 14018 6.851609 TGAAACACCATACATTCTACATTGC 58.148 36.000 0.00 0.00 0.00 3.56
2062 14051 5.163834 CCATTGTTAAATGCTTGTTGATGCC 60.164 40.000 0.00 0.00 41.66 4.40
2067 14056 4.339872 AAATGCTTGTTGATGCCTTGAA 57.660 36.364 0.00 0.00 0.00 2.69
2073 14062 4.209911 GCTTGTTGATGCCTTGAAAACTTC 59.790 41.667 0.00 0.00 0.00 3.01
2078 14067 4.637276 TGATGCCTTGAAAACTTCGTAGA 58.363 39.130 0.00 0.00 0.00 2.59
2089 14078 5.857822 AAACTTCGTAGATTGTACAAGGC 57.142 39.130 14.65 8.63 35.04 4.35
2094 14083 2.343101 GTAGATTGTACAAGGCGTGCA 58.657 47.619 14.65 0.00 38.59 4.57
2100 14089 1.468127 TGTACAAGGCGTGCATTCATG 59.532 47.619 0.00 0.00 35.03 3.07
2110 14099 3.283878 GTGCATTCATGTACGTACACG 57.716 47.619 29.54 22.54 46.33 4.49
2127 14116 1.930503 CACGTTTTTGGGTTTTCCTGC 59.069 47.619 0.00 0.00 40.46 4.85
2132 14121 1.406860 TTTGGGTTTTCCTGCCAGCC 61.407 55.000 0.00 0.00 40.46 4.85
2138 14127 0.827507 TTTTCCTGCCAGCCTCAACC 60.828 55.000 0.00 0.00 0.00 3.77
2154 14144 2.125106 CCTGGGCGCTCCTTACAC 60.125 66.667 3.94 0.00 36.20 2.90
2175 14165 2.355010 GGAGTAGCCCCGACTAAGTA 57.645 55.000 0.00 0.00 0.00 2.24
2185 14175 7.312415 AGCCCCGACTAAGTATTTTATGTAT 57.688 36.000 0.00 0.00 0.00 2.29
2186 14176 7.742767 AGCCCCGACTAAGTATTTTATGTATT 58.257 34.615 0.00 0.00 0.00 1.89
2187 14177 7.876582 AGCCCCGACTAAGTATTTTATGTATTC 59.123 37.037 0.00 0.00 0.00 1.75
2188 14178 7.876582 GCCCCGACTAAGTATTTTATGTATTCT 59.123 37.037 0.00 0.00 0.00 2.40
2189 14179 9.774413 CCCCGACTAAGTATTTTATGTATTCTT 57.226 33.333 0.00 0.00 0.00 2.52
2210 14200 8.879342 TTCTTTCCGATTCTTTTTAATTTGCA 57.121 26.923 0.00 0.00 0.00 4.08
2211 14201 9.487790 TTCTTTCCGATTCTTTTTAATTTGCAT 57.512 25.926 0.00 0.00 0.00 3.96
2231 14221 8.791327 TTGCATATTAGATTTGTCTGAAGTCA 57.209 30.769 0.00 0.00 0.00 3.41
2232 14222 8.791327 TGCATATTAGATTTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 0.00 3.18
2233 14223 9.230122 TGCATATTAGATTTGTCTGAAGTCAAA 57.770 29.630 5.43 5.43 37.44 2.69
2234 14224 9.495754 GCATATTAGATTTGTCTGAAGTCAAAC 57.504 33.333 5.13 1.59 36.30 2.93
2235 14225 9.994432 CATATTAGATTTGTCTGAAGTCAAACC 57.006 33.333 5.13 0.00 36.30 3.27
2236 14226 9.965902 ATATTAGATTTGTCTGAAGTCAAACCT 57.034 29.630 5.13 4.05 36.30 3.50
2237 14227 7.730364 TTAGATTTGTCTGAAGTCAAACCTC 57.270 36.000 3.05 1.70 36.30 3.85
2238 14228 5.684704 AGATTTGTCTGAAGTCAAACCTCA 58.315 37.500 5.13 0.00 36.30 3.86
2239 14229 6.302269 AGATTTGTCTGAAGTCAAACCTCAT 58.698 36.000 5.13 0.00 36.30 2.90
2240 14230 7.453393 AGATTTGTCTGAAGTCAAACCTCATA 58.547 34.615 5.13 0.00 36.30 2.15
2241 14231 7.939039 AGATTTGTCTGAAGTCAAACCTCATAA 59.061 33.333 5.13 0.00 36.30 1.90
2242 14232 7.873719 TTTGTCTGAAGTCAAACCTCATAAA 57.126 32.000 0.00 0.00 30.47 1.40
2243 14233 8.463930 TTTGTCTGAAGTCAAACCTCATAAAT 57.536 30.769 0.00 0.00 30.47 1.40
2244 14234 8.463930 TTGTCTGAAGTCAAACCTCATAAATT 57.536 30.769 0.00 0.00 0.00 1.82
2245 14235 8.463930 TGTCTGAAGTCAAACCTCATAAATTT 57.536 30.769 0.00 0.00 0.00 1.82
2246 14236 9.567776 TGTCTGAAGTCAAACCTCATAAATTTA 57.432 29.630 0.00 0.00 0.00 1.40
2249 14239 9.626045 CTGAAGTCAAACCTCATAAATTTAACC 57.374 33.333 1.21 0.00 0.00 2.85
2250 14240 9.137459 TGAAGTCAAACCTCATAAATTTAACCA 57.863 29.630 1.21 0.00 0.00 3.67
2251 14241 9.974980 GAAGTCAAACCTCATAAATTTAACCAA 57.025 29.630 1.21 0.00 0.00 3.67
2252 14242 9.758651 AAGTCAAACCTCATAAATTTAACCAAC 57.241 29.630 1.21 0.00 0.00 3.77
2253 14243 9.143155 AGTCAAACCTCATAAATTTAACCAACT 57.857 29.630 1.21 0.00 0.00 3.16
2254 14244 9.758651 GTCAAACCTCATAAATTTAACCAACTT 57.241 29.630 1.21 0.00 0.00 2.66
2255 14245 9.974980 TCAAACCTCATAAATTTAACCAACTTC 57.025 29.630 1.21 0.00 0.00 3.01
2256 14246 9.757227 CAAACCTCATAAATTTAACCAACTTCA 57.243 29.630 1.21 0.00 0.00 3.02
2299 14289 9.483916 CATGCACAATGTAAAATCCATATCATT 57.516 29.630 0.00 0.00 0.00 2.57
2307 14297 8.846943 TGTAAAATCCATATCATTAGATGCGT 57.153 30.769 0.00 0.00 35.67 5.24
2308 14298 8.935844 TGTAAAATCCATATCATTAGATGCGTC 58.064 33.333 0.00 0.00 35.67 5.19
2309 14299 7.984422 AAAATCCATATCATTAGATGCGTCA 57.016 32.000 8.99 0.00 35.67 4.35
2310 14300 8.571461 AAAATCCATATCATTAGATGCGTCAT 57.429 30.769 8.99 0.00 35.67 3.06
2311 14301 7.549615 AATCCATATCATTAGATGCGTCATG 57.450 36.000 8.99 4.33 35.67 3.07
2312 14302 6.284891 TCCATATCATTAGATGCGTCATGA 57.715 37.500 8.99 9.84 35.67 3.07
2313 14303 6.101997 TCCATATCATTAGATGCGTCATGAC 58.898 40.000 16.21 16.21 35.67 3.06
2314 14304 5.292834 CCATATCATTAGATGCGTCATGACC 59.707 44.000 20.03 12.96 35.67 4.02
2315 14305 4.613925 ATCATTAGATGCGTCATGACCT 57.386 40.909 20.03 13.09 31.91 3.85
2316 14306 4.406648 TCATTAGATGCGTCATGACCTT 57.593 40.909 20.03 10.66 0.00 3.50
2317 14307 5.529581 TCATTAGATGCGTCATGACCTTA 57.470 39.130 20.03 7.01 0.00 2.69
2318 14308 5.912892 TCATTAGATGCGTCATGACCTTAA 58.087 37.500 20.03 11.22 0.00 1.85
2319 14309 6.524734 TCATTAGATGCGTCATGACCTTAAT 58.475 36.000 20.03 12.73 0.00 1.40
2320 14310 6.992123 TCATTAGATGCGTCATGACCTTAATT 59.008 34.615 20.03 4.70 0.00 1.40
2321 14311 6.603237 TTAGATGCGTCATGACCTTAATTG 57.397 37.500 20.03 5.34 0.00 2.32
2322 14312 4.517285 AGATGCGTCATGACCTTAATTGT 58.483 39.130 20.03 0.00 0.00 2.71
2323 14313 4.572389 AGATGCGTCATGACCTTAATTGTC 59.428 41.667 20.03 7.24 0.00 3.18
2324 14314 3.669536 TGCGTCATGACCTTAATTGTCA 58.330 40.909 20.03 9.60 45.98 3.58
2325 14315 3.684305 TGCGTCATGACCTTAATTGTCAG 59.316 43.478 20.03 2.66 45.20 3.51
2326 14316 3.932710 GCGTCATGACCTTAATTGTCAGA 59.067 43.478 20.03 7.98 45.20 3.27
2327 14317 4.572389 GCGTCATGACCTTAATTGTCAGAT 59.428 41.667 20.03 0.00 45.20 2.90
2328 14318 5.065218 GCGTCATGACCTTAATTGTCAGATT 59.935 40.000 20.03 0.00 45.20 2.40
2329 14319 6.481134 CGTCATGACCTTAATTGTCAGATTG 58.519 40.000 20.03 7.26 45.20 2.67
2330 14320 6.092670 CGTCATGACCTTAATTGTCAGATTGT 59.907 38.462 20.03 0.00 45.20 2.71
2331 14321 7.277760 CGTCATGACCTTAATTGTCAGATTGTA 59.722 37.037 20.03 0.00 45.20 2.41
2332 14322 9.113838 GTCATGACCTTAATTGTCAGATTGTAT 57.886 33.333 15.31 0.00 45.20 2.29
2399 14389 9.729281 ATGATCAAATTTATGAAGTTTGGCTTT 57.271 25.926 0.00 0.00 37.59 3.51
2403 14393 9.912634 TCAAATTTATGAAGTTTGGCTTTAGAG 57.087 29.630 7.17 0.00 37.59 2.43
2404 14394 9.912634 CAAATTTATGAAGTTTGGCTTTAGAGA 57.087 29.630 0.00 0.00 37.59 3.10
2409 14399 9.520515 TTATGAAGTTTGGCTTTAGAGAATTCT 57.479 29.630 7.95 7.95 37.59 2.40
2410 14400 7.823745 TGAAGTTTGGCTTTAGAGAATTCTT 57.176 32.000 9.87 2.63 37.59 2.52
2411 14401 8.918202 TGAAGTTTGGCTTTAGAGAATTCTTA 57.082 30.769 9.87 1.66 37.59 2.10
2412 14402 9.520515 TGAAGTTTGGCTTTAGAGAATTCTTAT 57.479 29.630 9.87 4.44 37.59 1.73
2416 14406 9.670719 GTTTGGCTTTAGAGAATTCTTATATGC 57.329 33.333 9.87 11.40 34.79 3.14
2417 14407 8.978874 TTGGCTTTAGAGAATTCTTATATGCA 57.021 30.769 9.87 0.00 34.79 3.96
2418 14408 8.978874 TGGCTTTAGAGAATTCTTATATGCAA 57.021 30.769 9.87 3.35 34.79 4.08
2419 14409 9.407380 TGGCTTTAGAGAATTCTTATATGCAAA 57.593 29.630 9.87 2.70 34.79 3.68
2420 14410 9.890352 GGCTTTAGAGAATTCTTATATGCAAAG 57.110 33.333 9.87 11.48 34.79 2.77
2432 14422 8.871629 TCTTATATGCAAAGTAAAAAGGACCA 57.128 30.769 0.00 0.00 0.00 4.02
2433 14423 8.956426 TCTTATATGCAAAGTAAAAAGGACCAG 58.044 33.333 0.00 0.00 0.00 4.00
2434 14424 8.871629 TTATATGCAAAGTAAAAAGGACCAGA 57.128 30.769 0.00 0.00 0.00 3.86
2435 14425 5.712152 ATGCAAAGTAAAAAGGACCAGAG 57.288 39.130 0.00 0.00 0.00 3.35
2436 14426 3.888930 TGCAAAGTAAAAAGGACCAGAGG 59.111 43.478 0.00 0.00 0.00 3.69
2437 14427 3.255888 GCAAAGTAAAAAGGACCAGAGGG 59.744 47.826 0.00 0.00 41.29 4.30
2438 14428 4.725490 CAAAGTAAAAAGGACCAGAGGGA 58.275 43.478 0.00 0.00 38.05 4.20
2439 14429 4.642466 AAGTAAAAAGGACCAGAGGGAG 57.358 45.455 0.00 0.00 38.05 4.30
2440 14430 3.599348 AGTAAAAAGGACCAGAGGGAGT 58.401 45.455 0.00 0.00 38.05 3.85
2441 14431 4.759953 AGTAAAAAGGACCAGAGGGAGTA 58.240 43.478 0.00 0.00 38.05 2.59
2442 14432 4.531339 AGTAAAAAGGACCAGAGGGAGTAC 59.469 45.833 0.00 0.00 38.05 2.73
2443 14433 1.954035 AAAGGACCAGAGGGAGTACC 58.046 55.000 0.00 0.00 38.05 3.34
2444 14434 0.790993 AAGGACCAGAGGGAGTACCA 59.209 55.000 0.00 0.00 43.89 3.25
2445 14435 0.041386 AGGACCAGAGGGAGTACCAC 59.959 60.000 0.00 0.00 43.89 4.16
2446 14436 1.321074 GGACCAGAGGGAGTACCACG 61.321 65.000 0.00 0.00 43.89 4.94
2447 14437 0.323178 GACCAGAGGGAGTACCACGA 60.323 60.000 0.00 0.00 43.89 4.35
2448 14438 0.113776 ACCAGAGGGAGTACCACGAA 59.886 55.000 0.00 0.00 43.89 3.85
2449 14439 0.531200 CCAGAGGGAGTACCACGAAC 59.469 60.000 0.00 0.00 43.89 3.95
2450 14440 1.546961 CAGAGGGAGTACCACGAACT 58.453 55.000 0.00 0.00 43.89 3.01
2451 14441 1.202582 CAGAGGGAGTACCACGAACTG 59.797 57.143 0.00 0.00 43.89 3.16
2452 14442 1.075050 AGAGGGAGTACCACGAACTGA 59.925 52.381 0.00 0.00 43.89 3.41
2453 14443 1.201880 GAGGGAGTACCACGAACTGAC 59.798 57.143 0.00 0.00 43.89 3.51
2454 14444 0.963962 GGGAGTACCACGAACTGACA 59.036 55.000 0.00 0.00 39.85 3.58
2455 14445 1.549170 GGGAGTACCACGAACTGACAT 59.451 52.381 0.00 0.00 39.85 3.06
2456 14446 2.607187 GGAGTACCACGAACTGACATG 58.393 52.381 0.00 0.00 35.97 3.21
2457 14447 1.993370 GAGTACCACGAACTGACATGC 59.007 52.381 0.00 0.00 0.00 4.06
2458 14448 1.618837 AGTACCACGAACTGACATGCT 59.381 47.619 0.00 0.00 0.00 3.79
2459 14449 2.037251 AGTACCACGAACTGACATGCTT 59.963 45.455 0.00 0.00 0.00 3.91
2460 14450 1.967319 ACCACGAACTGACATGCTTT 58.033 45.000 0.00 0.00 0.00 3.51
2461 14451 3.120321 ACCACGAACTGACATGCTTTA 57.880 42.857 0.00 0.00 0.00 1.85
2462 14452 3.067106 ACCACGAACTGACATGCTTTAG 58.933 45.455 0.00 0.00 0.00 1.85
2463 14453 3.067106 CCACGAACTGACATGCTTTAGT 58.933 45.455 0.00 0.00 0.00 2.24
2464 14454 4.242475 CCACGAACTGACATGCTTTAGTA 58.758 43.478 0.00 0.00 0.00 1.82
2465 14455 4.688879 CCACGAACTGACATGCTTTAGTAA 59.311 41.667 0.00 0.00 0.00 2.24
2466 14456 5.351465 CCACGAACTGACATGCTTTAGTAAT 59.649 40.000 0.00 0.00 0.00 1.89
2467 14457 6.128282 CCACGAACTGACATGCTTTAGTAATT 60.128 38.462 0.00 0.00 0.00 1.40
2468 14458 7.298122 CACGAACTGACATGCTTTAGTAATTT 58.702 34.615 0.00 0.00 0.00 1.82
2469 14459 8.440059 CACGAACTGACATGCTTTAGTAATTTA 58.560 33.333 0.00 0.00 0.00 1.40
2470 14460 9.162764 ACGAACTGACATGCTTTAGTAATTTAT 57.837 29.630 0.00 0.00 0.00 1.40
2499 14489 2.516227 TAGCTGCACTAGAGGACTGT 57.484 50.000 1.02 0.00 0.00 3.55
2500 14490 2.516227 AGCTGCACTAGAGGACTGTA 57.484 50.000 1.02 0.00 0.00 2.74
2501 14491 2.808919 AGCTGCACTAGAGGACTGTAA 58.191 47.619 1.02 0.00 0.00 2.41
2502 14492 3.370104 AGCTGCACTAGAGGACTGTAAT 58.630 45.455 1.02 0.00 0.00 1.89
2503 14493 3.383185 AGCTGCACTAGAGGACTGTAATC 59.617 47.826 1.02 0.00 0.00 1.75
2504 14494 3.131223 GCTGCACTAGAGGACTGTAATCA 59.869 47.826 0.00 0.00 0.00 2.57
2505 14495 4.202202 GCTGCACTAGAGGACTGTAATCAT 60.202 45.833 0.00 0.00 0.00 2.45
2506 14496 5.268118 TGCACTAGAGGACTGTAATCATG 57.732 43.478 0.00 0.00 0.00 3.07
2507 14497 4.054671 GCACTAGAGGACTGTAATCATGC 58.945 47.826 0.00 0.00 0.00 4.06
2508 14498 4.202202 GCACTAGAGGACTGTAATCATGCT 60.202 45.833 0.00 0.00 0.00 3.79
2509 14499 5.527951 CACTAGAGGACTGTAATCATGCTC 58.472 45.833 0.00 0.00 0.00 4.26
2510 14500 5.301551 CACTAGAGGACTGTAATCATGCTCT 59.698 44.000 0.00 0.20 0.00 4.09
2511 14501 4.935352 AGAGGACTGTAATCATGCTCTC 57.065 45.455 0.00 0.00 0.00 3.20
2512 14502 3.640967 AGAGGACTGTAATCATGCTCTCC 59.359 47.826 0.00 0.00 0.00 3.71
2513 14503 2.703007 AGGACTGTAATCATGCTCTCCC 59.297 50.000 0.00 0.00 0.00 4.30
2514 14504 2.703007 GGACTGTAATCATGCTCTCCCT 59.297 50.000 0.00 0.00 0.00 4.20
2515 14505 3.135530 GGACTGTAATCATGCTCTCCCTT 59.864 47.826 0.00 0.00 0.00 3.95
2516 14506 4.125703 GACTGTAATCATGCTCTCCCTTG 58.874 47.826 0.00 0.00 0.00 3.61
2517 14507 2.877168 CTGTAATCATGCTCTCCCTTGC 59.123 50.000 0.00 0.00 0.00 4.01
2518 14508 2.239402 TGTAATCATGCTCTCCCTTGCA 59.761 45.455 0.00 0.00 43.67 4.08
2520 14510 2.273538 ATCATGCTCTCCCTTGCATC 57.726 50.000 0.00 0.00 46.65 3.91
2521 14511 1.210538 TCATGCTCTCCCTTGCATCT 58.789 50.000 0.00 0.00 46.65 2.90
2522 14512 1.562942 TCATGCTCTCCCTTGCATCTT 59.437 47.619 0.00 0.00 46.65 2.40
2523 14513 2.025605 TCATGCTCTCCCTTGCATCTTT 60.026 45.455 0.00 0.00 46.65 2.52
2524 14514 2.119801 TGCTCTCCCTTGCATCTTTC 57.880 50.000 0.00 0.00 33.94 2.62
2525 14515 1.632409 TGCTCTCCCTTGCATCTTTCT 59.368 47.619 0.00 0.00 33.94 2.52
2526 14516 2.040813 TGCTCTCCCTTGCATCTTTCTT 59.959 45.455 0.00 0.00 33.94 2.52
2527 14517 3.087781 GCTCTCCCTTGCATCTTTCTTT 58.912 45.455 0.00 0.00 0.00 2.52
2528 14518 3.509184 GCTCTCCCTTGCATCTTTCTTTT 59.491 43.478 0.00 0.00 0.00 2.27
2529 14519 4.021632 GCTCTCCCTTGCATCTTTCTTTTT 60.022 41.667 0.00 0.00 0.00 1.94
2544 14534 4.021650 TTTTTGTCTCGCGTCGCT 57.978 50.000 16.36 0.00 0.00 4.93
2545 14535 1.850640 TTTTTGTCTCGCGTCGCTC 59.149 52.632 16.36 3.85 0.00 5.03
2546 14536 1.554042 TTTTTGTCTCGCGTCGCTCC 61.554 55.000 16.36 0.63 0.00 4.70
2547 14537 2.686956 TTTTGTCTCGCGTCGCTCCA 62.687 55.000 16.36 3.38 0.00 3.86
2548 14538 2.486636 TTTGTCTCGCGTCGCTCCAT 62.487 55.000 16.36 0.00 0.00 3.41
2549 14539 2.652496 GTCTCGCGTCGCTCCATC 60.652 66.667 16.36 0.00 0.00 3.51
2550 14540 3.889044 TCTCGCGTCGCTCCATCC 61.889 66.667 16.36 0.00 0.00 3.51
2551 14541 4.933064 CTCGCGTCGCTCCATCCC 62.933 72.222 16.36 0.00 0.00 3.85
2554 14544 4.899239 GCGTCGCTCCATCCCCAG 62.899 72.222 10.68 0.00 0.00 4.45
2555 14545 4.227134 CGTCGCTCCATCCCCAGG 62.227 72.222 0.00 0.00 0.00 4.45
2556 14546 3.866582 GTCGCTCCATCCCCAGGG 61.867 72.222 0.00 0.00 0.00 4.45
2560 14550 2.851102 CTCCATCCCCAGGGCGAT 60.851 66.667 0.00 1.37 34.68 4.58
2561 14551 2.368192 TCCATCCCCAGGGCGATT 60.368 61.111 0.00 0.00 34.68 3.34
2562 14552 2.113986 CCATCCCCAGGGCGATTC 59.886 66.667 0.00 0.00 34.68 2.52
2563 14553 2.113986 CATCCCCAGGGCGATTCC 59.886 66.667 0.00 0.00 34.68 3.01
2564 14554 2.368192 ATCCCCAGGGCGATTCCA 60.368 61.111 0.00 0.00 36.21 3.53
2565 14555 2.006415 ATCCCCAGGGCGATTCCAA 61.006 57.895 0.00 0.00 36.21 3.53
2566 14556 1.999634 ATCCCCAGGGCGATTCCAAG 62.000 60.000 0.00 0.00 36.21 3.61
2567 14557 2.830370 CCCAGGGCGATTCCAAGC 60.830 66.667 0.00 0.00 36.21 4.01
2574 14564 3.264897 CGATTCCAAGCCGCCGAG 61.265 66.667 0.00 0.00 0.00 4.63
2575 14565 2.897350 GATTCCAAGCCGCCGAGG 60.897 66.667 0.00 0.00 44.97 4.63
2597 14587 3.732849 CAGCCCCTCCAACCCCTC 61.733 72.222 0.00 0.00 0.00 4.30
2600 14590 2.204306 CCCCTCCAACCCCTCCTT 60.204 66.667 0.00 0.00 0.00 3.36
2601 14591 2.309504 CCCCTCCAACCCCTCCTTC 61.310 68.421 0.00 0.00 0.00 3.46
2602 14592 2.309504 CCCTCCAACCCCTCCTTCC 61.310 68.421 0.00 0.00 0.00 3.46
2603 14593 2.309504 CCTCCAACCCCTCCTTCCC 61.310 68.421 0.00 0.00 0.00 3.97
2604 14594 2.204244 TCCAACCCCTCCTTCCCC 60.204 66.667 0.00 0.00 0.00 4.81
2605 14595 3.347590 CCAACCCCTCCTTCCCCC 61.348 72.222 0.00 0.00 0.00 5.40
2606 14596 2.204306 CAACCCCTCCTTCCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
2607 14597 1.857348 CAACCCCTCCTTCCCCCTT 60.857 63.158 0.00 0.00 0.00 3.95
2608 14598 0.551624 CAACCCCTCCTTCCCCCTTA 60.552 60.000 0.00 0.00 0.00 2.69
2609 14599 0.551871 AACCCCTCCTTCCCCCTTAC 60.552 60.000 0.00 0.00 0.00 2.34
2610 14600 1.696674 CCCCTCCTTCCCCCTTACC 60.697 68.421 0.00 0.00 0.00 2.85
2611 14601 2.070650 CCCTCCTTCCCCCTTACCG 61.071 68.421 0.00 0.00 0.00 4.02
2612 14602 1.306739 CCTCCTTCCCCCTTACCGT 60.307 63.158 0.00 0.00 0.00 4.83
2613 14603 0.031817 CCTCCTTCCCCCTTACCGTA 60.032 60.000 0.00 0.00 0.00 4.02
2614 14604 1.117994 CTCCTTCCCCCTTACCGTAC 58.882 60.000 0.00 0.00 0.00 3.67
2615 14605 0.325577 TCCTTCCCCCTTACCGTACC 60.326 60.000 0.00 0.00 0.00 3.34
2616 14606 1.340399 CCTTCCCCCTTACCGTACCC 61.340 65.000 0.00 0.00 0.00 3.69
2617 14607 1.679559 CTTCCCCCTTACCGTACCCG 61.680 65.000 0.00 0.00 0.00 5.28
2629 14619 4.424867 TACCCGGTGCCCCCTGAT 62.425 66.667 0.00 0.00 0.00 2.90
2633 14623 4.181010 CGGTGCCCCCTGATGGAG 62.181 72.222 0.00 0.00 35.39 3.86
2634 14624 4.512914 GGTGCCCCCTGATGGAGC 62.513 72.222 0.00 0.00 35.39 4.70
2635 14625 3.415087 GTGCCCCCTGATGGAGCT 61.415 66.667 0.00 0.00 35.39 4.09
2636 14626 2.072487 GTGCCCCCTGATGGAGCTA 61.072 63.158 0.00 0.00 35.39 3.32
2637 14627 1.073474 TGCCCCCTGATGGAGCTAT 60.073 57.895 0.00 0.00 35.39 2.97
2638 14628 1.377994 GCCCCCTGATGGAGCTATG 59.622 63.158 0.00 0.00 35.39 2.23
2639 14629 1.422161 GCCCCCTGATGGAGCTATGT 61.422 60.000 0.00 0.00 35.39 2.29
2640 14630 2.030027 CCCCCTGATGGAGCTATGTA 57.970 55.000 0.00 0.00 35.39 2.29
2641 14631 1.625818 CCCCCTGATGGAGCTATGTAC 59.374 57.143 0.00 0.00 35.39 2.90
2642 14632 1.625818 CCCCTGATGGAGCTATGTACC 59.374 57.143 0.00 0.00 35.39 3.34
2643 14633 2.614259 CCCTGATGGAGCTATGTACCT 58.386 52.381 0.00 0.00 35.39 3.08
2644 14634 3.502303 CCCCTGATGGAGCTATGTACCTA 60.502 52.174 0.00 0.00 35.39 3.08
2645 14635 3.766591 CCCTGATGGAGCTATGTACCTAG 59.233 52.174 1.10 1.10 35.39 3.02
2646 14636 3.766591 CCTGATGGAGCTATGTACCTAGG 59.233 52.174 7.41 7.41 34.57 3.02
2647 14637 3.766591 CTGATGGAGCTATGTACCTAGGG 59.233 52.174 14.81 0.00 0.00 3.53
2648 14638 3.142217 TGATGGAGCTATGTACCTAGGGT 59.858 47.826 14.81 1.17 40.16 4.34
2649 14639 4.355889 TGATGGAGCTATGTACCTAGGGTA 59.644 45.833 14.81 0.12 37.09 3.69
2650 14640 4.383931 TGGAGCTATGTACCTAGGGTAG 57.616 50.000 14.81 10.48 39.02 3.18
2660 14650 1.718280 CCTAGGGTAGGGTCATGGAC 58.282 60.000 0.00 0.00 42.42 4.02
2674 14664 4.756502 GTCATGGACCTGTCTAAACTACC 58.243 47.826 0.00 0.00 0.00 3.18
2675 14665 3.773119 TCATGGACCTGTCTAAACTACCC 59.227 47.826 0.00 0.00 0.00 3.69
2676 14666 3.555117 TGGACCTGTCTAAACTACCCT 57.445 47.619 0.00 0.00 0.00 4.34
2677 14667 4.680278 TGGACCTGTCTAAACTACCCTA 57.320 45.455 0.00 0.00 0.00 3.53
2678 14668 4.347607 TGGACCTGTCTAAACTACCCTAC 58.652 47.826 0.00 0.00 0.00 3.18
2679 14669 3.703556 GGACCTGTCTAAACTACCCTACC 59.296 52.174 0.00 0.00 0.00 3.18
2680 14670 3.703556 GACCTGTCTAAACTACCCTACCC 59.296 52.174 0.00 0.00 0.00 3.69
2681 14671 3.078000 ACCTGTCTAAACTACCCTACCCA 59.922 47.826 0.00 0.00 0.00 4.51
2682 14672 4.098894 CCTGTCTAAACTACCCTACCCAA 58.901 47.826 0.00 0.00 0.00 4.12
2683 14673 4.161754 CCTGTCTAAACTACCCTACCCAAG 59.838 50.000 0.00 0.00 0.00 3.61
2684 14674 4.098894 TGTCTAAACTACCCTACCCAAGG 58.901 47.826 0.00 0.00 46.09 3.61
2697 14687 5.782893 CTACCCAAGGACATCTCTAGAAG 57.217 47.826 0.00 0.00 0.00 2.85
2698 14688 4.338795 ACCCAAGGACATCTCTAGAAGA 57.661 45.455 0.00 0.00 38.72 2.87
2699 14689 4.689062 ACCCAAGGACATCTCTAGAAGAA 58.311 43.478 0.00 0.00 37.61 2.52
2700 14690 5.094387 ACCCAAGGACATCTCTAGAAGAAA 58.906 41.667 0.00 0.00 37.61 2.52
2701 14691 5.046231 ACCCAAGGACATCTCTAGAAGAAAC 60.046 44.000 0.00 0.00 37.61 2.78
2702 14692 5.423886 CCAAGGACATCTCTAGAAGAAACC 58.576 45.833 0.00 0.00 37.61 3.27
2703 14693 5.046304 CCAAGGACATCTCTAGAAGAAACCA 60.046 44.000 0.00 0.00 37.61 3.67
2704 14694 5.669164 AGGACATCTCTAGAAGAAACCAC 57.331 43.478 0.00 0.00 37.61 4.16
2705 14695 4.468153 AGGACATCTCTAGAAGAAACCACC 59.532 45.833 0.00 0.00 37.61 4.61
2706 14696 4.468153 GGACATCTCTAGAAGAAACCACCT 59.532 45.833 0.00 0.00 37.61 4.00
2707 14697 5.413309 ACATCTCTAGAAGAAACCACCTG 57.587 43.478 0.00 0.00 37.61 4.00
2708 14698 4.841246 ACATCTCTAGAAGAAACCACCTGT 59.159 41.667 0.00 0.00 37.61 4.00
2709 14699 5.046950 ACATCTCTAGAAGAAACCACCTGTC 60.047 44.000 0.00 0.00 37.61 3.51
2710 14700 4.480115 TCTCTAGAAGAAACCACCTGTCA 58.520 43.478 0.00 0.00 0.00 3.58
2711 14701 4.524714 TCTCTAGAAGAAACCACCTGTCAG 59.475 45.833 0.00 0.00 0.00 3.51
2712 14702 4.223953 TCTAGAAGAAACCACCTGTCAGT 58.776 43.478 0.00 0.00 0.00 3.41
2713 14703 3.477210 AGAAGAAACCACCTGTCAGTC 57.523 47.619 0.00 0.00 0.00 3.51
2714 14704 2.135933 GAAGAAACCACCTGTCAGTCG 58.864 52.381 0.00 0.00 0.00 4.18
2715 14705 1.410004 AGAAACCACCTGTCAGTCGA 58.590 50.000 0.00 0.00 0.00 4.20
2716 14706 1.068741 AGAAACCACCTGTCAGTCGAC 59.931 52.381 7.70 7.70 42.93 4.20
2717 14707 0.106149 AAACCACCTGTCAGTCGACC 59.894 55.000 13.01 0.00 41.85 4.79
2718 14708 0.759436 AACCACCTGTCAGTCGACCT 60.759 55.000 13.01 0.00 41.85 3.85
2719 14709 0.111832 ACCACCTGTCAGTCGACCTA 59.888 55.000 13.01 0.00 41.85 3.08
2720 14710 0.811915 CCACCTGTCAGTCGACCTAG 59.188 60.000 13.01 5.51 41.85 3.02
2721 14711 1.613520 CCACCTGTCAGTCGACCTAGA 60.614 57.143 13.01 5.35 41.85 2.43
2722 14712 1.740585 CACCTGTCAGTCGACCTAGAG 59.259 57.143 13.01 8.37 41.85 2.43
2723 14713 1.340211 ACCTGTCAGTCGACCTAGAGG 60.340 57.143 22.31 22.31 41.85 3.69
2738 14728 5.578005 CCTAGAGGTATTTCACTCGACAA 57.422 43.478 0.00 0.00 38.72 3.18
2739 14729 5.962433 CCTAGAGGTATTTCACTCGACAAA 58.038 41.667 0.00 0.00 38.72 2.83
2740 14730 5.805994 CCTAGAGGTATTTCACTCGACAAAC 59.194 44.000 0.00 0.00 38.72 2.93
2741 14731 5.470047 AGAGGTATTTCACTCGACAAACT 57.530 39.130 0.00 0.00 38.72 2.66
2742 14732 5.471257 AGAGGTATTTCACTCGACAAACTC 58.529 41.667 0.00 0.00 38.72 3.01
2743 14733 4.235360 AGGTATTTCACTCGACAAACTCG 58.765 43.478 0.00 0.00 44.44 4.18
2752 14742 2.996155 TCGACAAACTCGAGAACACTC 58.004 47.619 21.68 5.70 46.75 3.51
2753 14743 2.601504 TCGACAAACTCGAGAACACTCG 60.602 50.000 21.68 16.73 46.75 4.18
2763 14753 1.996191 GAGAACACTCGACCATGAAGC 59.004 52.381 0.00 0.00 0.00 3.86
2764 14754 1.620819 AGAACACTCGACCATGAAGCT 59.379 47.619 0.00 0.00 0.00 3.74
2765 14755 2.826128 AGAACACTCGACCATGAAGCTA 59.174 45.455 0.00 0.00 0.00 3.32
2766 14756 3.258372 AGAACACTCGACCATGAAGCTAA 59.742 43.478 0.00 0.00 0.00 3.09
2767 14757 3.895232 ACACTCGACCATGAAGCTAAT 57.105 42.857 0.00 0.00 0.00 1.73
2768 14758 3.786635 ACACTCGACCATGAAGCTAATC 58.213 45.455 0.00 0.00 0.00 1.75
2769 14759 3.195610 ACACTCGACCATGAAGCTAATCA 59.804 43.478 0.00 0.00 0.00 2.57
2770 14760 3.553511 CACTCGACCATGAAGCTAATCAC 59.446 47.826 0.00 0.00 30.82 3.06
2771 14761 2.791560 CTCGACCATGAAGCTAATCACG 59.208 50.000 0.00 0.00 30.82 4.35
2772 14762 1.258982 CGACCATGAAGCTAATCACGC 59.741 52.381 0.00 0.00 30.82 5.34
2773 14763 1.258982 GACCATGAAGCTAATCACGCG 59.741 52.381 3.53 3.53 30.82 6.01
2774 14764 1.134818 ACCATGAAGCTAATCACGCGA 60.135 47.619 15.93 0.00 30.82 5.87
2775 14765 1.258982 CCATGAAGCTAATCACGCGAC 59.741 52.381 15.93 0.00 30.82 5.19
2776 14766 1.258982 CATGAAGCTAATCACGCGACC 59.741 52.381 15.93 0.00 30.82 4.79
2777 14767 0.245266 TGAAGCTAATCACGCGACCA 59.755 50.000 15.93 0.00 0.00 4.02
2778 14768 1.134818 TGAAGCTAATCACGCGACCAT 60.135 47.619 15.93 0.00 0.00 3.55
2779 14769 1.258982 GAAGCTAATCACGCGACCATG 59.741 52.381 15.93 0.00 0.00 3.66
2780 14770 0.459899 AGCTAATCACGCGACCATGA 59.540 50.000 15.93 6.30 0.00 3.07
2781 14771 1.134818 AGCTAATCACGCGACCATGAA 60.135 47.619 15.93 0.00 0.00 2.57
2782 14772 1.258982 GCTAATCACGCGACCATGAAG 59.741 52.381 15.93 2.26 0.00 3.02
2783 14773 1.258982 CTAATCACGCGACCATGAAGC 59.741 52.381 15.93 0.00 0.00 3.86
2784 14774 0.391661 AATCACGCGACCATGAAGCT 60.392 50.000 15.93 0.00 0.00 3.74
2785 14775 0.459899 ATCACGCGACCATGAAGCTA 59.540 50.000 15.93 0.00 0.00 3.32
2786 14776 0.245266 TCACGCGACCATGAAGCTAA 59.755 50.000 15.93 0.00 0.00 3.09
2787 14777 1.134818 TCACGCGACCATGAAGCTAAT 60.135 47.619 15.93 0.00 0.00 1.73
2788 14778 1.258982 CACGCGACCATGAAGCTAATC 59.741 52.381 15.93 0.00 0.00 1.75
2789 14779 1.134818 ACGCGACCATGAAGCTAATCA 60.135 47.619 15.93 0.00 0.00 2.57
2790 14780 1.258982 CGCGACCATGAAGCTAATCAC 59.741 52.381 0.00 0.00 30.82 3.06
2791 14781 2.555199 GCGACCATGAAGCTAATCACT 58.445 47.619 0.00 0.00 30.82 3.41
2792 14782 2.541762 GCGACCATGAAGCTAATCACTC 59.458 50.000 0.00 0.00 30.82 3.51
2793 14783 2.791560 CGACCATGAAGCTAATCACTCG 59.208 50.000 0.00 0.00 30.82 4.18
2794 14784 3.489229 CGACCATGAAGCTAATCACTCGA 60.489 47.826 0.00 0.00 31.02 4.04
2795 14785 3.786635 ACCATGAAGCTAATCACTCGAC 58.213 45.455 0.00 0.00 30.82 4.20
2796 14786 2.791560 CCATGAAGCTAATCACTCGACG 59.208 50.000 0.00 0.00 30.82 5.12
2797 14787 2.561733 TGAAGCTAATCACTCGACGG 57.438 50.000 0.00 0.00 0.00 4.79
2798 14788 1.201343 GAAGCTAATCACTCGACGGC 58.799 55.000 0.00 0.00 0.00 5.68
2799 14789 0.179108 AAGCTAATCACTCGACGGCC 60.179 55.000 0.00 0.00 0.00 6.13
2800 14790 1.141019 GCTAATCACTCGACGGCCA 59.859 57.895 2.24 0.00 0.00 5.36
2801 14791 0.872021 GCTAATCACTCGACGGCCAG 60.872 60.000 2.24 0.00 0.00 4.85
2802 14792 0.738975 CTAATCACTCGACGGCCAGA 59.261 55.000 2.24 0.00 0.00 3.86
2803 14793 0.738975 TAATCACTCGACGGCCAGAG 59.261 55.000 15.75 15.75 40.16 3.35
2804 14794 0.965866 AATCACTCGACGGCCAGAGA 60.966 55.000 22.03 8.37 37.87 3.10
2805 14795 0.753479 ATCACTCGACGGCCAGAGAT 60.753 55.000 22.03 10.14 37.87 2.75
2806 14796 1.064946 CACTCGACGGCCAGAGATC 59.935 63.158 22.03 2.94 37.87 2.75
2807 14797 1.077357 ACTCGACGGCCAGAGATCT 60.077 57.895 22.03 0.00 37.87 2.75
2808 14798 1.098712 ACTCGACGGCCAGAGATCTC 61.099 60.000 22.03 15.29 37.87 2.75
2809 14799 1.077716 TCGACGGCCAGAGATCTCA 60.078 57.895 24.39 0.00 0.00 3.27
2810 14800 0.679960 TCGACGGCCAGAGATCTCAA 60.680 55.000 24.39 0.00 0.00 3.02
2811 14801 0.248825 CGACGGCCAGAGATCTCAAG 60.249 60.000 24.39 15.41 0.00 3.02
2812 14802 0.820871 GACGGCCAGAGATCTCAAGT 59.179 55.000 24.39 15.07 0.00 3.16
2813 14803 0.820871 ACGGCCAGAGATCTCAAGTC 59.179 55.000 24.39 14.91 0.00 3.01
2814 14804 0.820226 CGGCCAGAGATCTCAAGTCA 59.180 55.000 24.39 0.00 0.00 3.41
2815 14805 1.470632 CGGCCAGAGATCTCAAGTCAC 60.471 57.143 24.39 8.47 0.00 3.67
2816 14806 1.830477 GGCCAGAGATCTCAAGTCACT 59.170 52.381 24.39 0.00 0.00 3.41
2817 14807 2.159114 GGCCAGAGATCTCAAGTCACTC 60.159 54.545 24.39 4.70 0.00 3.51
2818 14808 2.760092 GCCAGAGATCTCAAGTCACTCT 59.240 50.000 24.39 0.00 38.27 3.24
2820 14810 3.772932 CAGAGATCTCAAGTCACTCTGC 58.227 50.000 24.39 0.00 44.62 4.26
2821 14811 2.423185 AGAGATCTCAAGTCACTCTGCG 59.577 50.000 24.39 0.00 36.72 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.310904 GCCGGAGTGGACTAGACTAG 58.689 60.000 5.05 8.00 42.00 2.57
2 3 1.380112 GGCCGGAGTGGACTAGACT 60.380 63.158 5.05 0.00 45.46 3.24
19 4726 1.530013 AACCACTACTCCACGTCGGG 61.530 60.000 0.00 0.00 34.36 5.14
21 4728 0.388134 CCAACCACTACTCCACGTCG 60.388 60.000 0.00 0.00 0.00 5.12
33 4740 2.254546 TCGATATCCATGCCAACCAC 57.745 50.000 0.00 0.00 0.00 4.16
45 4752 7.408132 TTTTGATGACGGATCTTTCGATATC 57.592 36.000 0.00 0.00 31.55 1.63
46 4753 7.657354 TCATTTTGATGACGGATCTTTCGATAT 59.343 33.333 0.00 0.00 31.55 1.63
50 4757 5.469373 TCATTTTGATGACGGATCTTTCG 57.531 39.130 0.00 0.00 31.55 3.46
75 4782 5.299279 CCTGGACATGAAACAGTGTTTTAGT 59.701 40.000 21.70 18.68 0.00 2.24
76 4783 5.299279 ACCTGGACATGAAACAGTGTTTTAG 59.701 40.000 21.70 16.01 0.00 1.85
77 4784 5.067153 CACCTGGACATGAAACAGTGTTTTA 59.933 40.000 21.70 18.16 0.00 1.52
78 4785 4.023291 ACCTGGACATGAAACAGTGTTTT 58.977 39.130 21.70 6.53 0.00 2.43
79 4786 3.381272 CACCTGGACATGAAACAGTGTTT 59.619 43.478 21.00 21.00 0.00 2.83
85 4792 4.277476 AGTTTTCACCTGGACATGAAACA 58.723 39.130 9.68 0.00 42.87 2.83
87 4794 5.930837 AAAGTTTTCACCTGGACATGAAA 57.069 34.783 0.00 3.64 41.80 2.69
105 4812 7.505585 TGAGGGTGATTAATGAAGAACAAAAGT 59.494 33.333 0.00 0.00 0.00 2.66
106 4813 7.885297 TGAGGGTGATTAATGAAGAACAAAAG 58.115 34.615 0.00 0.00 0.00 2.27
121 4828 4.895297 AGTTCATTGTTGTTGAGGGTGATT 59.105 37.500 0.00 0.00 0.00 2.57
132 4839 3.988379 ACGATGCAAGTTCATTGTTGT 57.012 38.095 0.00 0.00 37.72 3.32
137 4844 5.914635 CACAAAGTAACGATGCAAGTTCATT 59.085 36.000 13.19 7.81 33.42 2.57
139 4846 4.334203 ACACAAAGTAACGATGCAAGTTCA 59.666 37.500 13.19 0.54 33.42 3.18
148 4855 5.750067 ACAACGTCTTACACAAAGTAACGAT 59.250 36.000 6.52 0.00 38.56 3.73
162 4869 3.682696 TCAGCTAGGAGACAACGTCTTA 58.317 45.455 0.00 0.00 43.53 2.10
168 4875 5.967088 TCTGTAAATCAGCTAGGAGACAAC 58.033 41.667 0.00 0.00 43.32 3.32
173 4880 7.101652 TGTAGTTCTGTAAATCAGCTAGGAG 57.898 40.000 0.00 0.00 43.32 3.69
178 4885 5.012148 ACCACTGTAGTTCTGTAAATCAGCT 59.988 40.000 0.00 0.00 43.32 4.24
180 4887 7.226720 ACAAACCACTGTAGTTCTGTAAATCAG 59.773 37.037 0.00 0.00 44.85 2.90
185 4892 6.229936 AGACAAACCACTGTAGTTCTGTAA 57.770 37.500 0.00 0.00 0.00 2.41
189 4896 3.635373 TCGAGACAAACCACTGTAGTTCT 59.365 43.478 0.00 0.00 0.00 3.01
192 4899 2.691526 TGTCGAGACAAACCACTGTAGT 59.308 45.455 3.11 0.00 38.56 2.73
195 4902 1.806623 GCTGTCGAGACAAACCACTGT 60.807 52.381 7.38 0.00 41.33 3.55
214 4921 5.452302 CGTCGTTATTGATTTTCATCTTGGC 59.548 40.000 0.00 0.00 0.00 4.52
221 4928 3.429207 TGTCGCGTCGTTATTGATTTTCA 59.571 39.130 5.77 0.00 0.00 2.69
272 4979 8.819643 AAGCTCGTCTGGTTTTAATATCTATC 57.180 34.615 0.00 0.00 0.00 2.08
298 5005 0.451783 GTTTGGCCCTCACATTAGCG 59.548 55.000 0.00 0.00 0.00 4.26
302 5009 4.095590 CCGTTTGGCCCTCACATT 57.904 55.556 0.00 0.00 0.00 2.71
331 5038 2.317609 CGGGTCTTGACACCGCTTG 61.318 63.158 14.26 0.00 41.23 4.01
332 5039 2.030562 CGGGTCTTGACACCGCTT 59.969 61.111 14.26 0.00 41.23 4.68
333 5040 4.003788 CCGGGTCTTGACACCGCT 62.004 66.667 18.48 0.00 45.93 5.52
390 5100 1.003851 AACGTATTTGGATCGCGGTG 58.996 50.000 6.13 0.00 0.00 4.94
429 5139 2.580966 AGGAAATTCTCTACGCGGTC 57.419 50.000 12.47 0.00 0.00 4.79
447 5157 2.405357 CGTGTGCTCTTTTGACGTCTAG 59.595 50.000 17.92 11.31 0.00 2.43
592 5307 2.159170 CCAGTTGCCAACTTCCGAAAAA 60.159 45.455 7.51 0.00 40.46 1.94
593 5308 1.407258 CCAGTTGCCAACTTCCGAAAA 59.593 47.619 7.51 0.00 40.46 2.29
594 5309 1.028905 CCAGTTGCCAACTTCCGAAA 58.971 50.000 7.51 0.00 40.46 3.46
595 5310 0.821711 CCCAGTTGCCAACTTCCGAA 60.822 55.000 7.51 0.00 40.46 4.30
596 5311 1.228124 CCCAGTTGCCAACTTCCGA 60.228 57.895 7.51 0.00 40.46 4.55
597 5312 2.268076 CCCCAGTTGCCAACTTCCG 61.268 63.158 7.51 0.00 40.46 4.30
598 5313 0.759060 AACCCCAGTTGCCAACTTCC 60.759 55.000 7.51 0.00 40.46 3.46
612 5327 1.065636 CCCTCTCCGTTCTTTAACCCC 60.066 57.143 0.00 0.00 31.46 4.95
893 12594 6.705381 CCCTTCTGAATGAATGTATCTCTGTC 59.295 42.308 0.00 0.00 33.71 3.51
895 12596 5.469421 GCCCTTCTGAATGAATGTATCTCTG 59.531 44.000 0.00 0.00 33.71 3.35
896 12597 5.131642 TGCCCTTCTGAATGAATGTATCTCT 59.868 40.000 0.00 0.00 33.71 3.10
897 12598 5.371526 TGCCCTTCTGAATGAATGTATCTC 58.628 41.667 0.00 0.00 33.71 2.75
898 12599 5.131642 TCTGCCCTTCTGAATGAATGTATCT 59.868 40.000 0.00 0.00 33.71 1.98
899 12600 5.371526 TCTGCCCTTCTGAATGAATGTATC 58.628 41.667 0.00 0.00 33.71 2.24
900 12601 5.374921 CTCTGCCCTTCTGAATGAATGTAT 58.625 41.667 0.00 0.00 33.71 2.29
901 12602 4.774124 CTCTGCCCTTCTGAATGAATGTA 58.226 43.478 0.00 0.00 33.71 2.29
1008 12720 1.305297 ATGCACCTCGAGGAGACCA 60.305 57.895 37.69 24.95 38.94 4.02
1017 12729 1.153489 CTGGACCAGATGCACCTCG 60.153 63.158 17.22 0.00 32.44 4.63
1073 12785 1.376942 CTGGCTTCTGCAGTGGAGG 60.377 63.158 14.67 0.00 41.91 4.30
1104 12853 1.523758 ACACAGAACGGAGCAAATCC 58.476 50.000 0.00 0.00 45.64 3.01
1249 13009 0.036577 CAGAGCTGTGTGGAAGGGAG 60.037 60.000 1.91 0.00 0.00 4.30
1327 13138 0.516877 TGCATTACAGCACGCAGTTC 59.483 50.000 0.00 0.00 41.61 3.01
1328 13140 0.518636 CTGCATTACAGCACGCAGTT 59.481 50.000 0.00 0.00 45.34 3.16
1329 13141 2.165380 CTGCATTACAGCACGCAGT 58.835 52.632 0.00 0.00 45.34 4.40
1334 13152 0.028505 CCGCATCTGCATTACAGCAC 59.971 55.000 2.72 0.00 46.76 4.40
1335 13153 1.096967 CCCGCATCTGCATTACAGCA 61.097 55.000 2.72 0.00 46.76 4.41
1336 13154 1.650912 CCCGCATCTGCATTACAGC 59.349 57.895 2.72 0.00 46.76 4.40
1548 13388 8.017373 TGATTCAGATTTTGCTTTCGTCTTTAG 58.983 33.333 0.00 0.00 0.00 1.85
1594 13442 2.287103 CAGTCACATTGATCCTGCATCG 59.713 50.000 0.00 0.00 33.61 3.84
1751 13688 2.417719 CGTCTTCTTCAACCTGGGAAG 58.582 52.381 0.00 2.43 42.42 3.46
1775 13712 0.393537 CATCCAGCCTCCAACCTGTC 60.394 60.000 0.00 0.00 0.00 3.51
1801 13738 1.000163 TCAGACCTTCTGCTCACGAAC 60.000 52.381 0.00 0.00 43.95 3.95
1831 13789 3.060540 AGCACGAATAATTATGCACGACG 60.061 43.478 19.34 0.00 40.63 5.12
1846 13804 2.359850 GCCCACATCCAGCACGAA 60.360 61.111 0.00 0.00 0.00 3.85
1868 13832 2.106477 TGATGCGGTTGACATAGCAA 57.894 45.000 4.50 0.00 43.19 3.91
2046 14035 4.339872 TTCAAGGCATCAACAAGCATTT 57.660 36.364 0.00 0.00 31.78 2.32
2062 14051 8.009974 CCTTGTACAATCTACGAAGTTTTCAAG 58.990 37.037 9.13 0.00 37.78 3.02
2067 14056 4.387862 CGCCTTGTACAATCTACGAAGTTT 59.612 41.667 9.13 0.00 37.78 2.66
2073 14062 1.323534 GCACGCCTTGTACAATCTACG 59.676 52.381 9.13 12.44 0.00 3.51
2078 14067 2.158559 TGAATGCACGCCTTGTACAAT 58.841 42.857 9.13 0.00 0.00 2.71
2100 14089 6.229894 GGAAAACCCAAAAACGTGTACGTAC 61.230 44.000 18.90 18.90 42.96 3.67
2105 14094 3.429135 GCAGGAAAACCCAAAAACGTGTA 60.429 43.478 0.00 0.00 37.41 2.90
2107 14096 1.930503 GCAGGAAAACCCAAAAACGTG 59.069 47.619 0.00 0.00 37.41 4.49
2108 14097 1.134640 GGCAGGAAAACCCAAAAACGT 60.135 47.619 0.00 0.00 37.41 3.99
2109 14098 1.134670 TGGCAGGAAAACCCAAAAACG 60.135 47.619 0.00 0.00 37.41 3.60
2110 14099 2.560504 CTGGCAGGAAAACCCAAAAAC 58.439 47.619 6.61 0.00 37.41 2.43
2111 14100 1.134250 GCTGGCAGGAAAACCCAAAAA 60.134 47.619 17.64 0.00 37.41 1.94
2112 14101 0.467804 GCTGGCAGGAAAACCCAAAA 59.532 50.000 17.64 0.00 37.41 2.44
2113 14102 1.406860 GGCTGGCAGGAAAACCCAAA 61.407 55.000 17.64 0.00 37.41 3.28
2114 14103 1.836604 GGCTGGCAGGAAAACCCAA 60.837 57.895 17.64 0.00 37.41 4.12
2115 14104 2.203625 GGCTGGCAGGAAAACCCA 60.204 61.111 17.64 0.00 37.41 4.51
2116 14105 1.979155 GAGGCTGGCAGGAAAACCC 60.979 63.158 17.64 7.57 0.00 4.11
2117 14106 0.827507 TTGAGGCTGGCAGGAAAACC 60.828 55.000 17.64 8.35 0.00 3.27
2132 14121 1.899437 TAAGGAGCGCCCAGGTTGAG 61.899 60.000 15.92 0.00 37.41 3.02
2138 14127 2.509336 CGTGTAAGGAGCGCCCAG 60.509 66.667 15.92 0.00 37.41 4.45
2160 14150 6.736110 ACATAAAATACTTAGTCGGGGCTA 57.264 37.500 0.00 0.00 0.00 3.93
2161 14151 5.625568 ACATAAAATACTTAGTCGGGGCT 57.374 39.130 0.00 0.00 0.00 5.19
2185 14175 8.879342 TGCAAATTAAAAAGAATCGGAAAGAA 57.121 26.923 0.00 0.00 0.00 2.52
2205 14195 9.230122 TGACTTCAGACAAATCTAATATGCAAA 57.770 29.630 0.00 0.00 32.25 3.68
2206 14196 8.791327 TGACTTCAGACAAATCTAATATGCAA 57.209 30.769 0.00 0.00 32.25 4.08
2207 14197 8.791327 TTGACTTCAGACAAATCTAATATGCA 57.209 30.769 0.00 0.00 32.25 3.96
2208 14198 9.495754 GTTTGACTTCAGACAAATCTAATATGC 57.504 33.333 7.54 0.00 40.50 3.14
2209 14199 9.994432 GGTTTGACTTCAGACAAATCTAATATG 57.006 33.333 7.54 0.00 40.50 1.78
2210 14200 9.965902 AGGTTTGACTTCAGACAAATCTAATAT 57.034 29.630 13.64 0.00 44.71 1.28
2211 14201 9.436957 GAGGTTTGACTTCAGACAAATCTAATA 57.563 33.333 14.79 0.00 45.82 0.98
2212 14202 7.939039 TGAGGTTTGACTTCAGACAAATCTAAT 59.061 33.333 14.79 0.00 45.82 1.73
2213 14203 7.279615 TGAGGTTTGACTTCAGACAAATCTAA 58.720 34.615 14.79 7.50 45.82 2.10
2214 14204 6.826668 TGAGGTTTGACTTCAGACAAATCTA 58.173 36.000 14.79 4.69 45.82 1.98
2216 14206 6.566197 ATGAGGTTTGACTTCAGACAAATC 57.434 37.500 7.54 7.19 37.63 2.17
2217 14207 8.463930 TTTATGAGGTTTGACTTCAGACAAAT 57.536 30.769 7.54 0.00 37.63 2.32
2218 14208 7.873719 TTTATGAGGTTTGACTTCAGACAAA 57.126 32.000 2.66 1.04 37.63 2.83
2219 14209 8.463930 AATTTATGAGGTTTGACTTCAGACAA 57.536 30.769 2.66 0.00 37.63 3.18
2220 14210 8.463930 AAATTTATGAGGTTTGACTTCAGACA 57.536 30.769 2.66 0.00 37.63 3.41
2223 14213 9.626045 GGTTAAATTTATGAGGTTTGACTTCAG 57.374 33.333 0.00 0.00 37.63 3.02
2224 14214 9.137459 TGGTTAAATTTATGAGGTTTGACTTCA 57.863 29.630 0.00 0.00 38.59 3.02
2225 14215 9.974980 TTGGTTAAATTTATGAGGTTTGACTTC 57.025 29.630 0.00 0.00 0.00 3.01
2226 14216 9.758651 GTTGGTTAAATTTATGAGGTTTGACTT 57.241 29.630 0.00 0.00 0.00 3.01
2227 14217 9.143155 AGTTGGTTAAATTTATGAGGTTTGACT 57.857 29.630 0.00 0.00 0.00 3.41
2228 14218 9.758651 AAGTTGGTTAAATTTATGAGGTTTGAC 57.241 29.630 0.00 0.00 0.00 3.18
2229 14219 9.974980 GAAGTTGGTTAAATTTATGAGGTTTGA 57.025 29.630 0.00 0.00 0.00 2.69
2230 14220 9.757227 TGAAGTTGGTTAAATTTATGAGGTTTG 57.243 29.630 0.00 0.00 0.00 2.93
2262 14252 8.668510 TTTACATTGTGCATGTTGGTATTTTT 57.331 26.923 0.00 0.00 44.40 1.94
2263 14253 8.668510 TTTTACATTGTGCATGTTGGTATTTT 57.331 26.923 0.00 0.00 44.40 1.82
2264 14254 8.845413 ATTTTACATTGTGCATGTTGGTATTT 57.155 26.923 0.00 0.00 44.40 1.40
2265 14255 7.548780 GGATTTTACATTGTGCATGTTGGTATT 59.451 33.333 0.00 0.00 44.40 1.89
2266 14256 7.041107 GGATTTTACATTGTGCATGTTGGTAT 58.959 34.615 0.00 0.00 44.40 2.73
2267 14257 6.015095 TGGATTTTACATTGTGCATGTTGGTA 60.015 34.615 0.00 0.00 44.40 3.25
2268 14258 5.221601 TGGATTTTACATTGTGCATGTTGGT 60.222 36.000 0.00 0.00 44.40 3.67
2269 14259 5.236282 TGGATTTTACATTGTGCATGTTGG 58.764 37.500 0.00 0.00 44.40 3.77
2270 14260 6.971527 ATGGATTTTACATTGTGCATGTTG 57.028 33.333 0.00 0.00 44.40 3.33
2271 14261 8.476447 TGATATGGATTTTACATTGTGCATGTT 58.524 29.630 0.00 0.00 44.40 2.71
2273 14263 9.483916 AATGATATGGATTTTACATTGTGCATG 57.516 29.630 0.00 0.00 39.07 4.06
2281 14271 9.453572 ACGCATCTAATGATATGGATTTTACAT 57.546 29.630 0.00 0.00 0.00 2.29
2282 14272 8.846943 ACGCATCTAATGATATGGATTTTACA 57.153 30.769 0.00 0.00 0.00 2.41
2283 14273 8.935844 TGACGCATCTAATGATATGGATTTTAC 58.064 33.333 0.00 0.00 0.00 2.01
2284 14274 9.671279 ATGACGCATCTAATGATATGGATTTTA 57.329 29.630 0.00 0.00 0.00 1.52
2285 14275 7.984422 TGACGCATCTAATGATATGGATTTT 57.016 32.000 0.00 0.00 0.00 1.82
2286 14276 7.825761 TCATGACGCATCTAATGATATGGATTT 59.174 33.333 0.00 0.00 0.00 2.17
2287 14277 7.279536 GTCATGACGCATCTAATGATATGGATT 59.720 37.037 10.69 0.00 32.07 3.01
2288 14278 6.760298 GTCATGACGCATCTAATGATATGGAT 59.240 38.462 10.69 0.00 32.07 3.41
2289 14279 6.101997 GTCATGACGCATCTAATGATATGGA 58.898 40.000 10.69 0.00 32.07 3.41
2290 14280 5.292834 GGTCATGACGCATCTAATGATATGG 59.707 44.000 19.33 0.00 32.07 2.74
2291 14281 6.104665 AGGTCATGACGCATCTAATGATATG 58.895 40.000 19.33 0.00 32.07 1.78
2292 14282 6.291648 AGGTCATGACGCATCTAATGATAT 57.708 37.500 19.33 0.00 32.07 1.63
2293 14283 5.728637 AGGTCATGACGCATCTAATGATA 57.271 39.130 19.33 0.00 32.07 2.15
2294 14284 4.613925 AGGTCATGACGCATCTAATGAT 57.386 40.909 19.33 0.00 32.07 2.45
2295 14285 4.406648 AAGGTCATGACGCATCTAATGA 57.593 40.909 19.33 0.00 0.00 2.57
2296 14286 6.791887 ATTAAGGTCATGACGCATCTAATG 57.208 37.500 19.33 0.00 0.00 1.90
2297 14287 6.767902 ACAATTAAGGTCATGACGCATCTAAT 59.232 34.615 19.33 13.10 0.00 1.73
2298 14288 6.112734 ACAATTAAGGTCATGACGCATCTAA 58.887 36.000 19.33 11.61 0.00 2.10
2299 14289 5.670485 ACAATTAAGGTCATGACGCATCTA 58.330 37.500 19.33 3.44 0.00 1.98
2300 14290 4.517285 ACAATTAAGGTCATGACGCATCT 58.483 39.130 19.33 8.07 0.00 2.90
2301 14291 4.332543 TGACAATTAAGGTCATGACGCATC 59.667 41.667 19.33 5.77 40.16 3.91
2302 14292 4.260985 TGACAATTAAGGTCATGACGCAT 58.739 39.130 19.33 10.33 40.16 4.73
2303 14293 3.669536 TGACAATTAAGGTCATGACGCA 58.330 40.909 19.33 4.26 40.16 5.24
2304 14294 3.932710 TCTGACAATTAAGGTCATGACGC 59.067 43.478 19.33 12.27 43.72 5.19
2305 14295 6.092670 ACAATCTGACAATTAAGGTCATGACG 59.907 38.462 19.33 6.45 43.72 4.35
2306 14296 7.383102 ACAATCTGACAATTAAGGTCATGAC 57.617 36.000 17.91 17.91 43.72 3.06
2373 14363 9.729281 AAAGCCAAACTTCATAAATTTGATCAT 57.271 25.926 0.00 0.00 37.75 2.45
2377 14367 9.912634 CTCTAAAGCCAAACTTCATAAATTTGA 57.087 29.630 0.00 0.00 37.75 2.69
2378 14368 9.912634 TCTCTAAAGCCAAACTTCATAAATTTG 57.087 29.630 0.00 0.00 37.75 2.32
2383 14373 9.520515 AGAATTCTCTAAAGCCAAACTTCATAA 57.479 29.630 0.88 0.00 37.75 1.90
2384 14374 9.520515 AAGAATTCTCTAAAGCCAAACTTCATA 57.479 29.630 8.78 0.00 37.75 2.15
2385 14375 8.414629 AAGAATTCTCTAAAGCCAAACTTCAT 57.585 30.769 8.78 0.00 37.75 2.57
2386 14376 7.823745 AAGAATTCTCTAAAGCCAAACTTCA 57.176 32.000 8.78 0.00 37.75 3.02
2390 14380 9.670719 GCATATAAGAATTCTCTAAAGCCAAAC 57.329 33.333 8.78 0.00 0.00 2.93
2391 14381 9.407380 TGCATATAAGAATTCTCTAAAGCCAAA 57.593 29.630 8.78 0.00 0.00 3.28
2392 14382 8.978874 TGCATATAAGAATTCTCTAAAGCCAA 57.021 30.769 8.78 0.00 0.00 4.52
2393 14383 8.978874 TTGCATATAAGAATTCTCTAAAGCCA 57.021 30.769 8.78 0.60 0.00 4.75
2394 14384 9.890352 CTTTGCATATAAGAATTCTCTAAAGCC 57.110 33.333 8.78 0.00 0.00 4.35
2406 14396 9.303116 TGGTCCTTTTTACTTTGCATATAAGAA 57.697 29.630 3.66 0.00 0.00 2.52
2407 14397 8.871629 TGGTCCTTTTTACTTTGCATATAAGA 57.128 30.769 3.66 0.00 0.00 2.10
2408 14398 8.956426 TCTGGTCCTTTTTACTTTGCATATAAG 58.044 33.333 0.00 0.00 0.00 1.73
2409 14399 8.871629 TCTGGTCCTTTTTACTTTGCATATAA 57.128 30.769 0.00 0.00 0.00 0.98
2410 14400 7.556275 CCTCTGGTCCTTTTTACTTTGCATATA 59.444 37.037 0.00 0.00 0.00 0.86
2411 14401 6.378280 CCTCTGGTCCTTTTTACTTTGCATAT 59.622 38.462 0.00 0.00 0.00 1.78
2412 14402 5.710099 CCTCTGGTCCTTTTTACTTTGCATA 59.290 40.000 0.00 0.00 0.00 3.14
2413 14403 4.524328 CCTCTGGTCCTTTTTACTTTGCAT 59.476 41.667 0.00 0.00 0.00 3.96
2414 14404 3.888930 CCTCTGGTCCTTTTTACTTTGCA 59.111 43.478 0.00 0.00 0.00 4.08
2415 14405 3.255888 CCCTCTGGTCCTTTTTACTTTGC 59.744 47.826 0.00 0.00 0.00 3.68
2416 14406 4.725490 TCCCTCTGGTCCTTTTTACTTTG 58.275 43.478 0.00 0.00 0.00 2.77
2417 14407 4.415846 ACTCCCTCTGGTCCTTTTTACTTT 59.584 41.667 0.00 0.00 0.00 2.66
2418 14408 3.981375 ACTCCCTCTGGTCCTTTTTACTT 59.019 43.478 0.00 0.00 0.00 2.24
2419 14409 3.599348 ACTCCCTCTGGTCCTTTTTACT 58.401 45.455 0.00 0.00 0.00 2.24
2420 14410 4.323333 GGTACTCCCTCTGGTCCTTTTTAC 60.323 50.000 0.00 0.00 0.00 2.01
2421 14411 3.842436 GGTACTCCCTCTGGTCCTTTTTA 59.158 47.826 0.00 0.00 0.00 1.52
2422 14412 2.643304 GGTACTCCCTCTGGTCCTTTTT 59.357 50.000 0.00 0.00 0.00 1.94
2423 14413 2.267192 GGTACTCCCTCTGGTCCTTTT 58.733 52.381 0.00 0.00 0.00 2.27
2424 14414 1.151413 TGGTACTCCCTCTGGTCCTTT 59.849 52.381 0.00 0.00 0.00 3.11
2425 14415 0.790993 TGGTACTCCCTCTGGTCCTT 59.209 55.000 0.00 0.00 0.00 3.36
2426 14416 0.041386 GTGGTACTCCCTCTGGTCCT 59.959 60.000 0.00 0.00 0.00 3.85
2427 14417 1.321074 CGTGGTACTCCCTCTGGTCC 61.321 65.000 0.00 0.00 0.00 4.46
2428 14418 0.323178 TCGTGGTACTCCCTCTGGTC 60.323 60.000 0.00 0.00 0.00 4.02
2429 14419 0.113776 TTCGTGGTACTCCCTCTGGT 59.886 55.000 0.00 0.00 0.00 4.00
2430 14420 0.531200 GTTCGTGGTACTCCCTCTGG 59.469 60.000 0.00 0.00 0.00 3.86
2431 14421 1.202582 CAGTTCGTGGTACTCCCTCTG 59.797 57.143 0.00 0.00 0.00 3.35
2432 14422 1.075050 TCAGTTCGTGGTACTCCCTCT 59.925 52.381 0.00 0.00 0.00 3.69
2433 14423 1.201880 GTCAGTTCGTGGTACTCCCTC 59.798 57.143 0.00 0.00 0.00 4.30
2434 14424 1.254954 GTCAGTTCGTGGTACTCCCT 58.745 55.000 0.00 0.00 0.00 4.20
2435 14425 0.963962 TGTCAGTTCGTGGTACTCCC 59.036 55.000 0.00 0.00 0.00 4.30
2436 14426 2.607187 CATGTCAGTTCGTGGTACTCC 58.393 52.381 0.00 0.00 0.00 3.85
2437 14427 1.993370 GCATGTCAGTTCGTGGTACTC 59.007 52.381 0.00 0.00 0.00 2.59
2438 14428 1.618837 AGCATGTCAGTTCGTGGTACT 59.381 47.619 0.00 0.00 34.03 2.73
2439 14429 2.080286 AGCATGTCAGTTCGTGGTAC 57.920 50.000 0.00 0.00 34.03 3.34
2440 14430 2.831685 AAGCATGTCAGTTCGTGGTA 57.168 45.000 0.00 0.00 34.58 3.25
2441 14431 1.967319 AAAGCATGTCAGTTCGTGGT 58.033 45.000 0.00 0.00 36.76 4.16
2442 14432 3.067106 ACTAAAGCATGTCAGTTCGTGG 58.933 45.455 0.00 0.00 0.00 4.94
2443 14433 5.839262 TTACTAAAGCATGTCAGTTCGTG 57.161 39.130 0.00 0.00 0.00 4.35
2444 14434 7.435068 AAATTACTAAAGCATGTCAGTTCGT 57.565 32.000 0.00 0.00 0.00 3.85
2479 14469 2.374184 ACAGTCCTCTAGTGCAGCTAG 58.626 52.381 13.86 13.86 46.59 3.42
2480 14470 2.516227 ACAGTCCTCTAGTGCAGCTA 57.484 50.000 0.00 0.00 31.00 3.32
2481 14471 2.516227 TACAGTCCTCTAGTGCAGCT 57.484 50.000 0.00 0.00 31.00 4.24
2482 14472 3.131223 TGATTACAGTCCTCTAGTGCAGC 59.869 47.826 0.00 0.00 31.00 5.25
2483 14473 4.991153 TGATTACAGTCCTCTAGTGCAG 57.009 45.455 0.00 0.00 31.00 4.41
2484 14474 4.442052 GCATGATTACAGTCCTCTAGTGCA 60.442 45.833 0.00 0.00 31.00 4.57
2485 14475 4.054671 GCATGATTACAGTCCTCTAGTGC 58.945 47.826 0.00 0.00 31.00 4.40
2486 14476 5.301551 AGAGCATGATTACAGTCCTCTAGTG 59.698 44.000 0.00 0.00 34.42 2.74
2487 14477 5.454062 AGAGCATGATTACAGTCCTCTAGT 58.546 41.667 0.00 0.00 0.00 2.57
2488 14478 5.048083 GGAGAGCATGATTACAGTCCTCTAG 60.048 48.000 0.00 0.00 0.00 2.43
2489 14479 4.830046 GGAGAGCATGATTACAGTCCTCTA 59.170 45.833 0.00 0.00 0.00 2.43
2490 14480 3.640967 GGAGAGCATGATTACAGTCCTCT 59.359 47.826 0.00 0.00 0.00 3.69
2491 14481 3.244044 GGGAGAGCATGATTACAGTCCTC 60.244 52.174 0.00 0.00 0.00 3.71
2492 14482 2.703007 GGGAGAGCATGATTACAGTCCT 59.297 50.000 0.00 0.00 0.00 3.85
2493 14483 2.703007 AGGGAGAGCATGATTACAGTCC 59.297 50.000 0.00 0.00 0.00 3.85
2494 14484 4.125703 CAAGGGAGAGCATGATTACAGTC 58.874 47.826 0.00 0.00 0.00 3.51
2495 14485 3.683847 GCAAGGGAGAGCATGATTACAGT 60.684 47.826 0.00 0.00 0.00 3.55
2496 14486 2.877168 GCAAGGGAGAGCATGATTACAG 59.123 50.000 0.00 0.00 0.00 2.74
2497 14487 2.239402 TGCAAGGGAGAGCATGATTACA 59.761 45.455 0.00 0.00 35.51 2.41
2498 14488 2.923121 TGCAAGGGAGAGCATGATTAC 58.077 47.619 0.00 0.00 35.51 1.89
2505 14495 1.632409 AGAAAGATGCAAGGGAGAGCA 59.368 47.619 0.00 0.00 45.92 4.26
2506 14496 2.416680 AGAAAGATGCAAGGGAGAGC 57.583 50.000 0.00 0.00 0.00 4.09
2507 14497 5.718724 AAAAAGAAAGATGCAAGGGAGAG 57.281 39.130 0.00 0.00 0.00 3.20
2527 14517 1.554042 GGAGCGACGCGAGACAAAAA 61.554 55.000 15.93 0.00 0.00 1.94
2528 14518 2.019951 GGAGCGACGCGAGACAAAA 61.020 57.895 15.93 0.00 0.00 2.44
2529 14519 2.430244 GGAGCGACGCGAGACAAA 60.430 61.111 15.93 0.00 0.00 2.83
2530 14520 2.867333 GATGGAGCGACGCGAGACAA 62.867 60.000 15.93 1.61 0.00 3.18
2531 14521 3.396911 GATGGAGCGACGCGAGACA 62.397 63.158 15.93 12.24 0.00 3.41
2532 14522 2.652496 GATGGAGCGACGCGAGAC 60.652 66.667 15.93 6.67 0.00 3.36
2533 14523 3.889044 GGATGGAGCGACGCGAGA 61.889 66.667 15.93 1.91 0.00 4.04
2534 14524 4.933064 GGGATGGAGCGACGCGAG 62.933 72.222 15.93 7.68 0.00 5.03
2537 14527 4.899239 CTGGGGATGGAGCGACGC 62.899 72.222 13.03 13.03 0.00 5.19
2538 14528 4.227134 CCTGGGGATGGAGCGACG 62.227 72.222 0.00 0.00 0.00 5.12
2539 14529 3.866582 CCCTGGGGATGGAGCGAC 61.867 72.222 4.27 0.00 37.50 5.19
2543 14533 2.403132 GAATCGCCCTGGGGATGGAG 62.403 65.000 16.03 0.00 45.15 3.86
2544 14534 2.368192 AATCGCCCTGGGGATGGA 60.368 61.111 16.03 3.59 45.15 3.41
2545 14535 2.113986 GAATCGCCCTGGGGATGG 59.886 66.667 16.03 0.00 45.15 3.51
2546 14536 2.113986 GGAATCGCCCTGGGGATG 59.886 66.667 16.03 0.89 45.15 3.51
2548 14538 2.612430 TTGGAATCGCCCTGGGGA 60.612 61.111 16.03 10.57 41.24 4.81
2549 14539 2.124151 CTTGGAATCGCCCTGGGG 60.124 66.667 16.03 4.75 34.97 4.96
2550 14540 2.830370 GCTTGGAATCGCCCTGGG 60.830 66.667 8.86 8.86 34.97 4.45
2551 14541 2.830370 GGCTTGGAATCGCCCTGG 60.830 66.667 0.00 0.00 40.43 4.45
2552 14542 3.204827 CGGCTTGGAATCGCCCTG 61.205 66.667 0.00 0.00 43.38 4.45
2557 14547 3.264897 CTCGGCGGCTTGGAATCG 61.265 66.667 7.21 0.00 0.00 3.34
2558 14548 2.897350 CCTCGGCGGCTTGGAATC 60.897 66.667 7.21 0.00 0.00 2.52
2580 14570 3.732849 GAGGGGTTGGAGGGGCTG 61.733 72.222 0.00 0.00 0.00 4.85
2583 14573 2.204306 AAGGAGGGGTTGGAGGGG 60.204 66.667 0.00 0.00 0.00 4.79
2584 14574 2.309504 GGAAGGAGGGGTTGGAGGG 61.310 68.421 0.00 0.00 0.00 4.30
2585 14575 2.309504 GGGAAGGAGGGGTTGGAGG 61.310 68.421 0.00 0.00 0.00 4.30
2586 14576 2.309504 GGGGAAGGAGGGGTTGGAG 61.310 68.421 0.00 0.00 0.00 3.86
2587 14577 2.204244 GGGGAAGGAGGGGTTGGA 60.204 66.667 0.00 0.00 0.00 3.53
2588 14578 3.347590 GGGGGAAGGAGGGGTTGG 61.348 72.222 0.00 0.00 0.00 3.77
2589 14579 0.551624 TAAGGGGGAAGGAGGGGTTG 60.552 60.000 0.00 0.00 0.00 3.77
2590 14580 0.551871 GTAAGGGGGAAGGAGGGGTT 60.552 60.000 0.00 0.00 0.00 4.11
2591 14581 1.084273 GTAAGGGGGAAGGAGGGGT 59.916 63.158 0.00 0.00 0.00 4.95
2592 14582 1.696674 GGTAAGGGGGAAGGAGGGG 60.697 68.421 0.00 0.00 0.00 4.79
2593 14583 2.070650 CGGTAAGGGGGAAGGAGGG 61.071 68.421 0.00 0.00 0.00 4.30
2594 14584 0.031817 TACGGTAAGGGGGAAGGAGG 60.032 60.000 0.00 0.00 0.00 4.30
2595 14585 1.117994 GTACGGTAAGGGGGAAGGAG 58.882 60.000 0.00 0.00 0.00 3.69
2596 14586 0.325577 GGTACGGTAAGGGGGAAGGA 60.326 60.000 0.00 0.00 0.00 3.36
2597 14587 1.340399 GGGTACGGTAAGGGGGAAGG 61.340 65.000 0.00 0.00 0.00 3.46
2598 14588 1.679559 CGGGTACGGTAAGGGGGAAG 61.680 65.000 0.00 0.00 36.18 3.46
2599 14589 1.685421 CGGGTACGGTAAGGGGGAA 60.685 63.158 0.00 0.00 36.18 3.97
2600 14590 2.043046 CGGGTACGGTAAGGGGGA 60.043 66.667 0.00 0.00 36.18 4.81
2621 14611 1.625818 GTACATAGCTCCATCAGGGGG 59.374 57.143 0.00 0.00 41.70 5.40
2622 14612 1.625818 GGTACATAGCTCCATCAGGGG 59.374 57.143 0.00 0.00 38.97 4.79
2623 14613 2.614259 AGGTACATAGCTCCATCAGGG 58.386 52.381 0.00 0.00 34.83 4.45
2624 14614 3.766591 CCTAGGTACATAGCTCCATCAGG 59.233 52.174 9.07 0.00 35.39 3.86
2625 14615 3.766591 CCCTAGGTACATAGCTCCATCAG 59.233 52.174 9.07 0.00 35.39 2.90
2626 14616 3.142217 ACCCTAGGTACATAGCTCCATCA 59.858 47.826 9.07 0.00 32.11 3.07
2627 14617 3.780626 ACCCTAGGTACATAGCTCCATC 58.219 50.000 9.07 0.00 32.11 3.51
2628 14618 3.925261 ACCCTAGGTACATAGCTCCAT 57.075 47.619 9.07 0.00 32.11 3.41
2629 14619 3.075582 CCTACCCTAGGTACATAGCTCCA 59.924 52.174 9.07 0.00 41.18 3.86
2630 14620 3.563915 CCCTACCCTAGGTACATAGCTCC 60.564 56.522 9.07 0.00 44.73 4.70
2631 14621 3.075732 ACCCTACCCTAGGTACATAGCTC 59.924 52.174 9.07 0.00 44.73 4.09
2632 14622 3.069774 ACCCTACCCTAGGTACATAGCT 58.930 50.000 9.07 0.00 44.73 3.32
2633 14623 3.181425 TGACCCTACCCTAGGTACATAGC 60.181 52.174 9.07 0.00 44.73 2.97
2634 14624 4.736611 TGACCCTACCCTAGGTACATAG 57.263 50.000 8.29 7.59 44.73 2.23
2635 14625 4.202749 CCATGACCCTACCCTAGGTACATA 60.203 50.000 8.29 0.00 44.73 2.29
2636 14626 3.439558 CCATGACCCTACCCTAGGTACAT 60.440 52.174 8.29 0.00 44.73 2.29
2637 14627 2.090943 CCATGACCCTACCCTAGGTACA 60.091 54.545 8.29 0.00 44.73 2.90
2638 14628 2.178544 TCCATGACCCTACCCTAGGTAC 59.821 54.545 8.29 0.00 44.73 3.34
2639 14629 2.178544 GTCCATGACCCTACCCTAGGTA 59.821 54.545 8.29 0.00 44.73 3.08
2640 14630 1.062352 GTCCATGACCCTACCCTAGGT 60.062 57.143 8.29 0.00 44.73 3.08
2641 14631 1.718280 GTCCATGACCCTACCCTAGG 58.282 60.000 0.06 0.06 45.81 3.02
2642 14632 1.718280 GGTCCATGACCCTACCCTAG 58.282 60.000 1.68 0.00 46.19 3.02
2643 14633 3.961588 GGTCCATGACCCTACCCTA 57.038 57.895 1.68 0.00 46.19 3.53
2644 14634 4.831613 GGTCCATGACCCTACCCT 57.168 61.111 1.68 0.00 46.19 4.34
2652 14642 4.382793 GGGTAGTTTAGACAGGTCCATGAC 60.383 50.000 0.00 0.00 0.00 3.06
2653 14643 3.773119 GGGTAGTTTAGACAGGTCCATGA 59.227 47.826 0.00 0.00 0.00 3.07
2654 14644 3.775316 AGGGTAGTTTAGACAGGTCCATG 59.225 47.826 0.00 0.00 0.00 3.66
2655 14645 4.076175 AGGGTAGTTTAGACAGGTCCAT 57.924 45.455 0.00 0.00 0.00 3.41
2656 14646 3.555117 AGGGTAGTTTAGACAGGTCCA 57.445 47.619 0.00 0.00 0.00 4.02
2657 14647 3.703556 GGTAGGGTAGTTTAGACAGGTCC 59.296 52.174 0.00 0.00 0.00 4.46
2658 14648 3.703556 GGGTAGGGTAGTTTAGACAGGTC 59.296 52.174 0.00 0.00 0.00 3.85
2659 14649 3.078000 TGGGTAGGGTAGTTTAGACAGGT 59.922 47.826 0.00 0.00 0.00 4.00
2660 14650 3.716431 TGGGTAGGGTAGTTTAGACAGG 58.284 50.000 0.00 0.00 0.00 4.00
2661 14651 4.161754 CCTTGGGTAGGGTAGTTTAGACAG 59.838 50.000 0.00 0.00 40.67 3.51
2662 14652 4.098894 CCTTGGGTAGGGTAGTTTAGACA 58.901 47.826 0.00 0.00 40.67 3.41
2663 14653 4.161189 GTCCTTGGGTAGGGTAGTTTAGAC 59.839 50.000 0.00 0.00 44.86 2.59
2664 14654 4.202814 TGTCCTTGGGTAGGGTAGTTTAGA 60.203 45.833 0.00 0.00 44.86 2.10
2665 14655 4.098894 TGTCCTTGGGTAGGGTAGTTTAG 58.901 47.826 0.00 0.00 44.86 1.85
2666 14656 4.144825 TGTCCTTGGGTAGGGTAGTTTA 57.855 45.455 0.00 0.00 44.86 2.01
2667 14657 2.994355 TGTCCTTGGGTAGGGTAGTTT 58.006 47.619 0.00 0.00 44.86 2.66
2668 14658 2.727429 TGTCCTTGGGTAGGGTAGTT 57.273 50.000 0.00 0.00 44.86 2.24
2669 14659 2.318207 AGATGTCCTTGGGTAGGGTAGT 59.682 50.000 0.00 0.00 44.86 2.73
2670 14660 2.966516 GAGATGTCCTTGGGTAGGGTAG 59.033 54.545 0.00 0.00 44.86 3.18
2671 14661 2.590611 AGAGATGTCCTTGGGTAGGGTA 59.409 50.000 0.00 0.00 44.86 3.69
2672 14662 1.366435 AGAGATGTCCTTGGGTAGGGT 59.634 52.381 0.00 0.00 44.86 4.34
2673 14663 2.182516 AGAGATGTCCTTGGGTAGGG 57.817 55.000 0.00 0.00 44.86 3.53
2674 14664 4.186077 TCTAGAGATGTCCTTGGGTAGG 57.814 50.000 0.00 0.00 46.27 3.18
2675 14665 5.450453 TCTTCTAGAGATGTCCTTGGGTAG 58.550 45.833 0.00 0.00 0.00 3.18
2676 14666 5.467668 TCTTCTAGAGATGTCCTTGGGTA 57.532 43.478 0.00 0.00 0.00 3.69
2677 14667 4.338795 TCTTCTAGAGATGTCCTTGGGT 57.661 45.455 0.00 0.00 0.00 4.51
2678 14668 5.423886 GTTTCTTCTAGAGATGTCCTTGGG 58.576 45.833 0.00 0.00 33.49 4.12
2679 14669 5.046304 TGGTTTCTTCTAGAGATGTCCTTGG 60.046 44.000 0.00 0.00 33.49 3.61
2680 14670 5.872070 GTGGTTTCTTCTAGAGATGTCCTTG 59.128 44.000 0.00 0.00 33.49 3.61
2681 14671 5.046231 GGTGGTTTCTTCTAGAGATGTCCTT 60.046 44.000 0.00 0.00 33.49 3.36
2682 14672 4.468153 GGTGGTTTCTTCTAGAGATGTCCT 59.532 45.833 0.00 0.00 33.49 3.85
2683 14673 4.468153 AGGTGGTTTCTTCTAGAGATGTCC 59.532 45.833 0.00 0.00 33.49 4.02
2684 14674 5.046950 ACAGGTGGTTTCTTCTAGAGATGTC 60.047 44.000 0.00 0.00 33.49 3.06
2685 14675 4.841246 ACAGGTGGTTTCTTCTAGAGATGT 59.159 41.667 0.00 0.00 33.49 3.06
2686 14676 5.047021 TGACAGGTGGTTTCTTCTAGAGATG 60.047 44.000 0.00 0.00 33.49 2.90
2687 14677 5.087323 TGACAGGTGGTTTCTTCTAGAGAT 58.913 41.667 0.00 0.00 33.49 2.75
2688 14678 4.480115 TGACAGGTGGTTTCTTCTAGAGA 58.520 43.478 0.00 0.00 0.00 3.10
2689 14679 4.282195 ACTGACAGGTGGTTTCTTCTAGAG 59.718 45.833 7.51 0.00 0.00 2.43
2690 14680 4.223953 ACTGACAGGTGGTTTCTTCTAGA 58.776 43.478 7.51 0.00 0.00 2.43
2691 14681 4.561105 GACTGACAGGTGGTTTCTTCTAG 58.439 47.826 7.51 0.00 0.00 2.43
2692 14682 3.005472 CGACTGACAGGTGGTTTCTTCTA 59.995 47.826 7.51 0.00 0.00 2.10
2693 14683 2.224066 CGACTGACAGGTGGTTTCTTCT 60.224 50.000 7.51 0.00 0.00 2.85
2694 14684 2.135933 CGACTGACAGGTGGTTTCTTC 58.864 52.381 7.51 0.00 0.00 2.87
2695 14685 1.760613 TCGACTGACAGGTGGTTTCTT 59.239 47.619 7.51 0.00 0.00 2.52
2696 14686 1.068741 GTCGACTGACAGGTGGTTTCT 59.931 52.381 8.70 0.00 44.82 2.52
2697 14687 1.499049 GTCGACTGACAGGTGGTTTC 58.501 55.000 8.70 0.00 44.82 2.78
2698 14688 3.680842 GTCGACTGACAGGTGGTTT 57.319 52.632 8.70 0.00 44.82 3.27
2716 14706 5.578005 TTGTCGAGTGAAATACCTCTAGG 57.422 43.478 0.00 0.00 42.17 3.02
2717 14707 6.622549 AGTTTGTCGAGTGAAATACCTCTAG 58.377 40.000 0.00 0.00 0.00 2.43
2718 14708 6.585695 AGTTTGTCGAGTGAAATACCTCTA 57.414 37.500 0.00 0.00 0.00 2.43
2719 14709 5.470047 AGTTTGTCGAGTGAAATACCTCT 57.530 39.130 0.00 0.00 0.00 3.69
2720 14710 5.765072 GAGTTTGTCGAGTGAAATACCTC 57.235 43.478 0.00 0.00 0.00 3.85
2743 14733 1.996191 GCTTCATGGTCGAGTGTTCTC 59.004 52.381 0.00 0.00 37.35 2.87
2744 14734 1.620819 AGCTTCATGGTCGAGTGTTCT 59.379 47.619 0.00 0.00 0.00 3.01
2745 14735 2.086054 AGCTTCATGGTCGAGTGTTC 57.914 50.000 0.00 0.00 0.00 3.18
2746 14736 3.678056 TTAGCTTCATGGTCGAGTGTT 57.322 42.857 0.00 0.00 0.00 3.32
2747 14737 3.195610 TGATTAGCTTCATGGTCGAGTGT 59.804 43.478 0.00 0.00 0.00 3.55
2748 14738 3.553511 GTGATTAGCTTCATGGTCGAGTG 59.446 47.826 0.00 0.00 0.00 3.51
2749 14739 3.735208 CGTGATTAGCTTCATGGTCGAGT 60.735 47.826 0.00 0.00 0.00 4.18
2750 14740 2.791560 CGTGATTAGCTTCATGGTCGAG 59.208 50.000 0.00 0.00 0.00 4.04
2751 14741 2.809446 CGTGATTAGCTTCATGGTCGA 58.191 47.619 0.00 0.00 0.00 4.20
2752 14742 1.258982 GCGTGATTAGCTTCATGGTCG 59.741 52.381 9.19 1.80 33.97 4.79
2753 14743 1.258982 CGCGTGATTAGCTTCATGGTC 59.741 52.381 9.19 0.00 33.97 4.02
2754 14744 1.134818 TCGCGTGATTAGCTTCATGGT 60.135 47.619 5.77 0.00 33.97 3.55
2755 14745 1.258982 GTCGCGTGATTAGCTTCATGG 59.741 52.381 5.77 1.32 33.97 3.66
2756 14746 1.258982 GGTCGCGTGATTAGCTTCATG 59.741 52.381 5.77 0.00 36.02 3.07
2757 14747 1.134818 TGGTCGCGTGATTAGCTTCAT 60.135 47.619 5.77 0.00 0.00 2.57
2758 14748 0.245266 TGGTCGCGTGATTAGCTTCA 59.755 50.000 5.77 0.00 0.00 3.02
2759 14749 1.258982 CATGGTCGCGTGATTAGCTTC 59.741 52.381 5.77 0.00 0.00 3.86
2760 14750 1.134818 TCATGGTCGCGTGATTAGCTT 60.135 47.619 5.77 0.00 0.00 3.74
2761 14751 0.459899 TCATGGTCGCGTGATTAGCT 59.540 50.000 5.77 0.00 0.00 3.32
2762 14752 1.258982 CTTCATGGTCGCGTGATTAGC 59.741 52.381 5.77 0.00 0.00 3.09
2763 14753 1.258982 GCTTCATGGTCGCGTGATTAG 59.741 52.381 5.77 0.00 0.00 1.73
2764 14754 1.134818 AGCTTCATGGTCGCGTGATTA 60.135 47.619 5.77 0.00 0.00 1.75
2765 14755 0.391661 AGCTTCATGGTCGCGTGATT 60.392 50.000 5.77 0.00 0.00 2.57
2766 14756 0.459899 TAGCTTCATGGTCGCGTGAT 59.540 50.000 5.77 0.00 0.00 3.06
2767 14757 0.245266 TTAGCTTCATGGTCGCGTGA 59.755 50.000 5.77 0.00 0.00 4.35
2768 14758 1.258982 GATTAGCTTCATGGTCGCGTG 59.741 52.381 5.77 0.00 0.00 5.34
2769 14759 1.134818 TGATTAGCTTCATGGTCGCGT 60.135 47.619 5.77 0.00 0.00 6.01
2770 14760 1.258982 GTGATTAGCTTCATGGTCGCG 59.741 52.381 0.00 0.00 0.00 5.87
2771 14761 2.541762 GAGTGATTAGCTTCATGGTCGC 59.458 50.000 0.00 0.00 0.00 5.19
2772 14762 2.791560 CGAGTGATTAGCTTCATGGTCG 59.208 50.000 0.00 0.00 0.00 4.79
2773 14763 3.799420 GTCGAGTGATTAGCTTCATGGTC 59.201 47.826 0.00 0.00 0.00 4.02
2774 14764 3.735208 CGTCGAGTGATTAGCTTCATGGT 60.735 47.826 0.00 0.00 0.00 3.55
2775 14765 2.791560 CGTCGAGTGATTAGCTTCATGG 59.208 50.000 0.00 0.00 0.00 3.66
2776 14766 2.791560 CCGTCGAGTGATTAGCTTCATG 59.208 50.000 0.00 0.00 0.00 3.07
2777 14767 2.799917 GCCGTCGAGTGATTAGCTTCAT 60.800 50.000 0.00 0.00 0.00 2.57
2778 14768 1.469251 GCCGTCGAGTGATTAGCTTCA 60.469 52.381 0.00 0.00 0.00 3.02
2779 14769 1.201343 GCCGTCGAGTGATTAGCTTC 58.799 55.000 0.00 0.00 0.00 3.86
2780 14770 0.179108 GGCCGTCGAGTGATTAGCTT 60.179 55.000 0.00 0.00 0.00 3.74
2781 14771 1.320344 TGGCCGTCGAGTGATTAGCT 61.320 55.000 0.00 0.00 0.00 3.32
2782 14772 0.872021 CTGGCCGTCGAGTGATTAGC 60.872 60.000 0.00 0.00 0.00 3.09
2783 14773 0.738975 TCTGGCCGTCGAGTGATTAG 59.261 55.000 0.00 0.00 0.00 1.73
2784 14774 0.738975 CTCTGGCCGTCGAGTGATTA 59.261 55.000 0.00 0.00 0.00 1.75
2785 14775 0.965866 TCTCTGGCCGTCGAGTGATT 60.966 55.000 14.01 0.00 0.00 2.57
2786 14776 0.753479 ATCTCTGGCCGTCGAGTGAT 60.753 55.000 14.01 7.70 0.00 3.06
2787 14777 1.377366 GATCTCTGGCCGTCGAGTGA 61.377 60.000 14.01 5.87 0.00 3.41
2788 14778 1.064946 GATCTCTGGCCGTCGAGTG 59.935 63.158 14.01 0.85 0.00 3.51
2789 14779 1.077357 AGATCTCTGGCCGTCGAGT 60.077 57.895 14.01 4.58 0.00 4.18
2790 14780 1.098129 TGAGATCTCTGGCCGTCGAG 61.098 60.000 22.95 9.55 0.00 4.04
2791 14781 0.679960 TTGAGATCTCTGGCCGTCGA 60.680 55.000 22.95 0.00 0.00 4.20
2792 14782 0.248825 CTTGAGATCTCTGGCCGTCG 60.249 60.000 22.95 0.12 0.00 5.12
2793 14783 0.820871 ACTTGAGATCTCTGGCCGTC 59.179 55.000 22.95 0.00 0.00 4.79
2794 14784 0.820871 GACTTGAGATCTCTGGCCGT 59.179 55.000 22.95 12.19 0.00 5.68
2795 14785 0.820226 TGACTTGAGATCTCTGGCCG 59.180 55.000 22.95 9.39 0.00 6.13
2796 14786 1.830477 AGTGACTTGAGATCTCTGGCC 59.170 52.381 22.95 11.71 0.00 5.36
2797 14787 2.760092 AGAGTGACTTGAGATCTCTGGC 59.240 50.000 22.95 17.50 34.74 4.85
2798 14788 3.429272 GCAGAGTGACTTGAGATCTCTGG 60.429 52.174 22.95 16.74 46.73 3.86
2800 14790 2.423185 CGCAGAGTGACTTGAGATCTCT 59.577 50.000 22.95 3.32 36.15 3.10
2801 14791 2.796304 CGCAGAGTGACTTGAGATCTC 58.204 52.381 16.21 16.21 0.00 2.75
2802 14792 2.937469 CGCAGAGTGACTTGAGATCT 57.063 50.000 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.