Multiple sequence alignment - TraesCS3B01G391900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G391900 chr3B 100.000 6264 0 0 872 7135 617428894 617435157 0.000000e+00 11568.0
1 TraesCS3B01G391900 chr3B 100.000 447 0 0 1 447 617428023 617428469 0.000000e+00 826.0
2 TraesCS3B01G391900 chr3B 97.436 156 4 0 1 156 816527380 816527535 4.240000e-67 267.0
3 TraesCS3B01G391900 chr3B 96.154 156 5 1 1 156 596851823 596851977 3.300000e-63 254.0
4 TraesCS3B01G391900 chr3B 94.545 165 6 2 1 163 580024272 580024109 1.190000e-62 252.0
5 TraesCS3B01G391900 chr3B 95.890 73 3 0 2388 2460 91431070 91430998 1.260000e-22 119.0
6 TraesCS3B01G391900 chr3B 94.737 76 4 0 2385 2460 383700484 383700409 1.260000e-22 119.0
7 TraesCS3B01G391900 chr3B 92.593 81 6 0 2390 2470 636122609 636122529 4.520000e-22 117.0
8 TraesCS3B01G391900 chr3B 95.833 72 3 0 2389 2460 784595698 784595627 4.520000e-22 117.0
9 TraesCS3B01G391900 chr3D 94.072 4723 179 42 2457 7135 464163800 464168465 0.000000e+00 7077.0
10 TraesCS3B01G391900 chr3D 92.757 1491 67 14 925 2393 464162323 464163794 0.000000e+00 2117.0
11 TraesCS3B01G391900 chr3D 88.210 229 8 8 222 447 464161595 464161807 9.190000e-64 255.0
12 TraesCS3B01G391900 chr3D 89.600 125 11 2 5462 5586 552666457 552666335 2.660000e-34 158.0
13 TraesCS3B01G391900 chr3D 100.000 29 0 0 872 900 464162065 464162093 4.000000e-03 54.7
14 TraesCS3B01G391900 chr3A 94.597 2332 86 18 4733 7048 607110376 607112683 0.000000e+00 3572.0
15 TraesCS3B01G391900 chr3A 94.702 1510 51 13 2883 4386 607108181 607109667 0.000000e+00 2318.0
16 TraesCS3B01G391900 chr3A 94.329 1111 47 6 881 1978 607106206 607107313 0.000000e+00 1688.0
17 TraesCS3B01G391900 chr3A 93.224 428 11 4 2457 2884 607107657 607108066 1.320000e-171 614.0
18 TraesCS3B01G391900 chr3A 87.805 410 35 7 3522 3929 714787289 714787685 3.900000e-127 466.0
19 TraesCS3B01G391900 chr3A 94.241 191 10 1 4558 4747 607109736 607109926 2.520000e-74 291.0
20 TraesCS3B01G391900 chr3A 86.620 284 7 5 2118 2393 607107391 607107651 1.170000e-72 285.0
21 TraesCS3B01G391900 chr3A 88.372 129 7 4 322 447 607105840 607105963 1.600000e-31 148.0
22 TraesCS3B01G391900 chr3A 92.308 78 4 2 2011 2087 607107312 607107388 7.570000e-20 110.0
23 TraesCS3B01G391900 chr5D 86.355 557 50 15 3547 4096 527390347 527389810 1.030000e-162 584.0
24 TraesCS3B01G391900 chr6B 87.475 503 41 12 3582 4075 649697909 649697420 1.740000e-155 560.0
25 TraesCS3B01G391900 chr6B 86.853 502 42 11 3587 4075 649646145 649645655 2.260000e-149 540.0
26 TraesCS3B01G391900 chr4A 84.892 556 51 14 3522 4073 554707285 554707811 1.360000e-146 531.0
27 TraesCS3B01G391900 chr4A 91.566 83 6 1 2378 2460 657204666 657204747 5.850000e-21 113.0
28 TraesCS3B01G391900 chr1D 88.049 410 35 7 3522 3929 64335108 64335505 2.330000e-129 473.0
29 TraesCS3B01G391900 chr1D 88.739 222 18 4 4865 5086 416535700 416535486 1.530000e-66 265.0
30 TraesCS3B01G391900 chr1D 91.089 101 8 1 4865 4964 416535850 416535750 1.250000e-27 135.0
31 TraesCS3B01G391900 chr7D 87.835 411 34 9 3522 3929 600062128 600062525 1.080000e-127 468.0
32 TraesCS3B01G391900 chr2B 87.805 410 36 7 3522 3929 755328698 755329095 1.080000e-127 468.0
33 TraesCS3B01G391900 chr2B 96.250 160 6 0 1 160 152706505 152706664 5.490000e-66 263.0
34 TraesCS3B01G391900 chr2B 89.600 125 12 1 5462 5586 603172794 603172917 2.660000e-34 158.0
35 TraesCS3B01G391900 chr2D 87.166 374 37 5 3895 4268 512811612 512811974 1.430000e-111 414.0
36 TraesCS3B01G391900 chr2D 88.630 343 30 3 3921 4263 47624367 47624034 6.660000e-110 409.0
37 TraesCS3B01G391900 chr2D 89.189 222 17 6 4865 5086 34674942 34674728 3.280000e-68 270.0
38 TraesCS3B01G391900 chr2D 90.400 125 11 1 5462 5586 512811972 512812095 5.730000e-36 163.0
39 TraesCS3B01G391900 chr7B 86.933 375 36 6 3895 4268 692192162 692192524 6.660000e-110 409.0
40 TraesCS3B01G391900 chr7B 94.512 164 6 2 1 161 78061887 78062050 4.270000e-62 250.0
41 TraesCS3B01G391900 chr4B 85.894 397 40 7 3895 4289 81930388 81930006 6.660000e-110 409.0
42 TraesCS3B01G391900 chr4B 93.421 76 5 0 2384 2459 22853219 22853144 5.850000e-21 113.0
43 TraesCS3B01G391900 chr1B 85.390 397 42 7 3895 4289 169950128 169949746 1.440000e-106 398.0
44 TraesCS3B01G391900 chr1B 95.652 161 7 0 1 161 674470476 674470636 7.100000e-65 259.0
45 TraesCS3B01G391900 chr1B 96.203 158 4 1 1 156 540151206 540151049 2.550000e-64 257.0
46 TraesCS3B01G391900 chr1A 89.640 222 16 6 4865 5086 513849977 513849763 7.050000e-70 276.0
47 TraesCS3B01G391900 chr1A 94.872 117 5 1 5459 5575 137931709 137931824 1.580000e-41 182.0
48 TraesCS3B01G391900 chr1A 91.406 128 9 2 5459 5586 115559433 115559308 2.650000e-39 174.0
49 TraesCS3B01G391900 chr1A 98.529 68 1 0 2394 2461 82521890 82521823 3.500000e-23 121.0
50 TraesCS3B01G391900 chr5B 89.189 222 10 7 4865 5086 618773467 618773674 1.530000e-66 265.0
51 TraesCS3B01G391900 chr5B 96.835 158 3 1 1 156 637117111 637116954 5.490000e-66 263.0
52 TraesCS3B01G391900 chr5B 95.652 161 7 0 1 161 421698666 421698506 7.100000e-65 259.0
53 TraesCS3B01G391900 chr5B 88.288 222 12 7 4865 5086 663637455 663637248 3.300000e-63 254.0
54 TraesCS3B01G391900 chr7A 91.558 154 7 5 4865 5018 47537520 47537373 2.610000e-49 207.0
55 TraesCS3B01G391900 chr7A 92.742 124 8 1 5459 5582 690955420 690955298 2.050000e-40 178.0
56 TraesCS3B01G391900 chr2A 84.685 222 14 8 4865 5086 611737067 611736866 3.370000e-48 204.0
57 TraesCS3B01G391900 chr2A 92.593 81 4 2 2380 2460 240475228 240475306 1.630000e-21 115.0
58 TraesCS3B01G391900 chr6D 91.129 124 10 1 5459 5582 84292358 84292236 4.430000e-37 167.0
59 TraesCS3B01G391900 chr4D 95.890 73 2 1 2389 2460 23322715 23322787 4.520000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G391900 chr3B 617428023 617435157 7134 False 6197.000 11568 100.000000 1 7135 2 chr3B.!!$F3 7134
1 TraesCS3B01G391900 chr3D 464161595 464168465 6870 False 2375.925 7077 93.759750 222 7135 4 chr3D.!!$F1 6913
2 TraesCS3B01G391900 chr3A 607105840 607112683 6843 False 1128.250 3572 92.299125 322 7048 8 chr3A.!!$F2 6726
3 TraesCS3B01G391900 chr5D 527389810 527390347 537 True 584.000 584 86.355000 3547 4096 1 chr5D.!!$R1 549
4 TraesCS3B01G391900 chr4A 554707285 554707811 526 False 531.000 531 84.892000 3522 4073 1 chr4A.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.039437 ACCGATCGCTACCGCATTAG 60.039 55.0 10.32 0.0 35.30 1.73 F
213 214 0.039527 AAAATGCGTCCGAACTTGCC 60.040 50.0 0.00 0.0 0.00 4.52 F
287 288 0.385098 GTTGTAACAGAAACCCGCGC 60.385 55.0 0.00 0.0 0.00 6.86 F
2188 2421 0.251077 GAGGGCATTCATAGCTGGGG 60.251 60.0 0.00 0.0 0.00 4.96 F
2192 2425 0.541296 GCATTCATAGCTGGGGGCAT 60.541 55.0 0.00 0.0 44.79 4.40 F
2458 2699 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.0 19.43 0.0 41.02 3.28 F
4179 4552 0.813821 GGAAAGATGCTTGGACTGCC 59.186 55.0 0.00 0.0 0.00 4.85 F
4543 4933 0.178992 CAACCACCACCCACATCTGT 60.179 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1337 1554 0.250124 TAGAGCCACAACCCACAACG 60.250 55.000 0.00 0.00 0.00 4.10 R
2181 2414 0.252375 ACAAATGAATGCCCCCAGCT 60.252 50.000 0.00 0.00 44.23 4.24 R
2201 2434 1.216678 TCCAGTGTCCCCACAAACAAT 59.783 47.619 0.00 0.00 44.39 2.71 R
4179 4552 1.079543 CAGTGCCTGTTCCTCCTCG 60.080 63.158 0.00 0.00 0.00 4.63 R
4300 4673 1.014352 CACCATGCCGCTAGGTTTAC 58.986 55.000 4.78 0.00 40.50 2.01 R
4386 4759 2.169769 TCGCAGGTCTAGTAAAATGGGG 59.830 50.000 0.00 0.00 0.00 4.96 R
5382 6244 0.178903 TGAGTGCTACCAGGTTCCCT 60.179 55.000 0.00 0.00 0.00 4.20 R
6319 7181 0.248843 CGAGCTCTCAAGGCCTTTCT 59.751 55.000 17.61 7.94 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.979036 CGCTGTATTTTTGCGCGC 59.021 55.556 27.26 27.26 43.08 6.86
21 22 1.511887 CGCTGTATTTTTGCGCGCT 60.512 52.632 33.29 14.40 43.08 5.92
22 23 1.723115 CGCTGTATTTTTGCGCGCTG 61.723 55.000 33.29 11.22 43.08 5.18
23 24 1.983160 CTGTATTTTTGCGCGCTGC 59.017 52.632 33.29 15.60 46.70 5.25
24 25 0.454957 CTGTATTTTTGCGCGCTGCT 60.455 50.000 33.29 14.39 46.63 4.24
25 26 0.728803 TGTATTTTTGCGCGCTGCTG 60.729 50.000 33.29 0.80 46.63 4.41
26 27 1.154054 TATTTTTGCGCGCTGCTGG 60.154 52.632 33.29 0.43 46.63 4.85
27 28 1.581727 TATTTTTGCGCGCTGCTGGA 61.582 50.000 33.29 13.45 46.63 3.86
28 29 2.807631 ATTTTTGCGCGCTGCTGGAG 62.808 55.000 33.29 0.00 46.63 3.86
49 50 4.058206 CGCGCGCGCTGCATTATA 62.058 61.111 45.97 0.00 46.97 0.98
50 51 2.202096 GCGCGCGCTGCATTATAG 60.202 61.111 44.38 15.91 46.97 1.31
51 52 2.202096 CGCGCGCTGCATTATAGC 60.202 61.111 30.48 6.56 46.97 2.97
57 58 3.957260 CTGCATTATAGCGCGGCT 58.043 55.556 8.83 8.38 43.41 5.52
58 59 1.494628 CTGCATTATAGCGCGGCTG 59.505 57.895 8.83 0.53 40.10 4.85
59 60 2.174349 GCATTATAGCGCGGCTGC 59.826 61.111 8.83 7.70 40.10 5.25
61 62 1.494628 CATTATAGCGCGGCTGCTG 59.505 57.895 22.96 10.42 46.70 4.41
62 63 0.945743 CATTATAGCGCGGCTGCTGA 60.946 55.000 22.96 12.07 46.70 4.26
63 64 0.249868 ATTATAGCGCGGCTGCTGAA 60.250 50.000 22.96 17.85 46.70 3.02
64 65 0.875908 TTATAGCGCGGCTGCTGAAG 60.876 55.000 22.96 6.33 46.70 3.02
99 100 2.785258 GCTAAACCAGCCGAAGCG 59.215 61.111 0.00 0.00 45.23 4.68
100 101 2.785258 CTAAACCAGCCGAAGCGC 59.215 61.111 0.00 0.00 46.67 5.92
101 102 3.083600 CTAAACCAGCCGAAGCGCG 62.084 63.158 0.00 0.00 46.67 6.86
117 118 4.622456 CGCGCGGCAAACAGGTTT 62.622 61.111 24.84 0.00 0.00 3.27
118 119 2.279186 GCGCGGCAAACAGGTTTT 60.279 55.556 8.83 0.00 0.00 2.43
119 120 1.880796 GCGCGGCAAACAGGTTTTT 60.881 52.632 8.83 0.00 0.00 1.94
147 148 2.793946 GCATAGCGTGGCTGTTGG 59.206 61.111 0.00 0.00 40.10 3.77
148 149 1.745115 GCATAGCGTGGCTGTTGGA 60.745 57.895 0.00 0.00 40.10 3.53
149 150 1.709147 GCATAGCGTGGCTGTTGGAG 61.709 60.000 0.00 0.00 40.10 3.86
150 151 0.108186 CATAGCGTGGCTGTTGGAGA 60.108 55.000 0.00 0.00 40.10 3.71
151 152 0.833287 ATAGCGTGGCTGTTGGAGAT 59.167 50.000 0.00 0.00 40.10 2.75
152 153 0.108186 TAGCGTGGCTGTTGGAGATG 60.108 55.000 0.00 0.00 40.10 2.90
153 154 3.044059 GCGTGGCTGTTGGAGATGC 62.044 63.158 0.00 0.00 0.00 3.91
154 155 1.376424 CGTGGCTGTTGGAGATGCT 60.376 57.895 0.00 0.00 0.00 3.79
155 156 1.364626 CGTGGCTGTTGGAGATGCTC 61.365 60.000 0.00 0.00 0.00 4.26
156 157 0.321919 GTGGCTGTTGGAGATGCTCA 60.322 55.000 0.00 0.00 31.08 4.26
157 158 0.622136 TGGCTGTTGGAGATGCTCAT 59.378 50.000 0.00 0.00 31.08 2.90
158 159 1.839354 TGGCTGTTGGAGATGCTCATA 59.161 47.619 0.00 0.00 31.08 2.15
159 160 2.158856 TGGCTGTTGGAGATGCTCATAG 60.159 50.000 0.00 0.00 31.08 2.23
160 161 2.158842 GGCTGTTGGAGATGCTCATAGT 60.159 50.000 0.00 0.00 31.08 2.12
161 162 3.129871 GCTGTTGGAGATGCTCATAGTC 58.870 50.000 0.00 0.00 31.08 2.59
162 163 3.726607 CTGTTGGAGATGCTCATAGTCC 58.273 50.000 0.00 4.54 31.08 3.85
163 164 3.378512 TGTTGGAGATGCTCATAGTCCT 58.621 45.455 10.42 0.00 31.08 3.85
164 165 3.386078 TGTTGGAGATGCTCATAGTCCTC 59.614 47.826 10.42 0.00 31.08 3.71
165 166 2.234143 TGGAGATGCTCATAGTCCTCG 58.766 52.381 10.42 0.00 31.08 4.63
166 167 1.543802 GGAGATGCTCATAGTCCTCGG 59.456 57.143 0.00 0.00 31.08 4.63
167 168 2.509569 GAGATGCTCATAGTCCTCGGA 58.490 52.381 0.00 0.00 0.00 4.55
168 169 2.227865 GAGATGCTCATAGTCCTCGGAC 59.772 54.545 8.03 8.03 44.86 4.79
169 170 1.271102 GATGCTCATAGTCCTCGGACC 59.729 57.143 12.30 0.00 45.59 4.46
170 171 1.101635 TGCTCATAGTCCTCGGACCG 61.102 60.000 7.84 7.84 45.59 4.79
171 172 0.818445 GCTCATAGTCCTCGGACCGA 60.818 60.000 17.28 17.28 45.59 4.69
172 173 1.898902 CTCATAGTCCTCGGACCGAT 58.101 55.000 18.71 4.84 45.59 4.18
173 174 1.807742 CTCATAGTCCTCGGACCGATC 59.192 57.143 18.71 11.03 45.59 3.69
174 175 0.517755 CATAGTCCTCGGACCGATCG 59.482 60.000 18.71 8.51 45.59 3.69
175 176 1.235948 ATAGTCCTCGGACCGATCGC 61.236 60.000 18.71 10.10 45.59 4.58
176 177 2.321263 TAGTCCTCGGACCGATCGCT 62.321 60.000 18.71 16.57 45.59 4.93
177 178 1.890979 GTCCTCGGACCGATCGCTA 60.891 63.158 18.71 0.00 39.08 4.26
178 179 1.890979 TCCTCGGACCGATCGCTAC 60.891 63.158 18.71 0.00 34.61 3.58
179 180 2.638154 CTCGGACCGATCGCTACC 59.362 66.667 18.71 11.09 34.61 3.18
180 181 3.237946 CTCGGACCGATCGCTACCG 62.238 68.421 27.14 27.14 44.09 4.02
181 182 4.977126 CGGACCGATCGCTACCGC 62.977 72.222 24.02 5.95 37.32 5.68
182 183 3.896133 GGACCGATCGCTACCGCA 61.896 66.667 10.32 0.00 35.30 5.69
183 184 2.335369 GACCGATCGCTACCGCAT 59.665 61.111 10.32 0.00 35.30 4.73
184 185 1.299926 GACCGATCGCTACCGCATT 60.300 57.895 10.32 0.00 35.30 3.56
185 186 0.039798 GACCGATCGCTACCGCATTA 60.040 55.000 10.32 0.00 35.30 1.90
186 187 0.039437 ACCGATCGCTACCGCATTAG 60.039 55.000 10.32 0.00 35.30 1.73
187 188 0.240145 CCGATCGCTACCGCATTAGA 59.760 55.000 10.32 0.00 35.30 2.10
188 189 1.135373 CCGATCGCTACCGCATTAGAT 60.135 52.381 10.32 0.00 35.30 1.98
189 190 2.096980 CCGATCGCTACCGCATTAGATA 59.903 50.000 10.32 0.00 35.30 1.98
190 191 3.427098 CCGATCGCTACCGCATTAGATAA 60.427 47.826 10.32 0.00 35.30 1.75
191 192 3.542704 CGATCGCTACCGCATTAGATAAC 59.457 47.826 0.26 0.00 35.30 1.89
192 193 3.994204 TCGCTACCGCATTAGATAACA 57.006 42.857 0.00 0.00 35.30 2.41
193 194 4.310357 TCGCTACCGCATTAGATAACAA 57.690 40.909 0.00 0.00 35.30 2.83
194 195 4.684877 TCGCTACCGCATTAGATAACAAA 58.315 39.130 0.00 0.00 35.30 2.83
195 196 5.110598 TCGCTACCGCATTAGATAACAAAA 58.889 37.500 0.00 0.00 35.30 2.44
196 197 5.581479 TCGCTACCGCATTAGATAACAAAAA 59.419 36.000 0.00 0.00 35.30 1.94
212 213 1.766069 AAAAATGCGTCCGAACTTGC 58.234 45.000 0.00 0.00 0.00 4.01
213 214 0.039527 AAAATGCGTCCGAACTTGCC 60.040 50.000 0.00 0.00 0.00 4.52
214 215 1.862602 AAATGCGTCCGAACTTGCCC 61.863 55.000 0.00 0.00 0.00 5.36
215 216 2.748058 AATGCGTCCGAACTTGCCCT 62.748 55.000 0.00 0.00 0.00 5.19
216 217 3.119096 GCGTCCGAACTTGCCCTC 61.119 66.667 0.00 0.00 0.00 4.30
217 218 2.809601 CGTCCGAACTTGCCCTCG 60.810 66.667 0.00 0.00 34.83 4.63
218 219 2.654877 GTCCGAACTTGCCCTCGA 59.345 61.111 0.00 0.00 37.23 4.04
219 220 1.218316 GTCCGAACTTGCCCTCGAT 59.782 57.895 0.00 0.00 37.23 3.59
220 221 0.458669 GTCCGAACTTGCCCTCGATA 59.541 55.000 0.00 0.00 37.23 2.92
246 247 5.888691 TTTTCTTTGTACACAAGCTCACA 57.111 34.783 0.00 0.00 37.15 3.58
287 288 0.385098 GTTGTAACAGAAACCCGCGC 60.385 55.000 0.00 0.00 0.00 6.86
302 303 0.535102 CGCGCCCCTTTTCCATATCT 60.535 55.000 0.00 0.00 0.00 1.98
311 312 6.179040 CCCCTTTTCCATATCTGATCTGATC 58.821 44.000 17.39 10.72 0.00 2.92
312 313 6.012683 CCCCTTTTCCATATCTGATCTGATCT 60.013 42.308 17.39 6.52 0.00 2.75
314 315 7.256583 CCCTTTTCCATATCTGATCTGATCTGA 60.257 40.741 23.67 23.67 40.72 3.27
315 316 8.322828 CCTTTTCCATATCTGATCTGATCTGAT 58.677 37.037 30.23 30.23 45.85 2.90
318 319 7.565323 TCCATATCTGATCTGATCTGATACG 57.435 40.000 31.99 27.42 46.19 3.06
319 320 7.341805 TCCATATCTGATCTGATCTGATACGA 58.658 38.462 31.99 27.70 46.19 3.43
320 321 7.997803 TCCATATCTGATCTGATCTGATACGAT 59.002 37.037 31.99 22.23 46.19 3.73
321 322 9.282569 CCATATCTGATCTGATCTGATACGATA 57.717 37.037 31.99 20.87 46.19 2.92
325 326 9.844257 ATCTGATCTGATCTGATACGATATACA 57.156 33.333 28.07 5.82 43.40 2.29
326 327 9.323985 TCTGATCTGATCTGATACGATATACAG 57.676 37.037 19.44 13.66 33.13 2.74
335 336 7.431249 TCTGATACGATATACAGAACAAACCC 58.569 38.462 0.00 0.00 36.63 4.11
340 341 4.141801 CGATATACAGAACAAACCCAGGGA 60.142 45.833 14.54 0.00 0.00 4.20
387 391 3.750373 ATTTATGCCGCCGTCGCCT 62.750 57.895 0.00 0.00 0.00 5.52
388 392 4.884257 TTATGCCGCCGTCGCCTC 62.884 66.667 0.00 0.00 0.00 4.70
415 420 2.366972 CCTCCCTTCCCCCATCGT 60.367 66.667 0.00 0.00 0.00 3.73
938 1148 5.832539 TCTTGATCTGAACTTCTCCCTTT 57.167 39.130 0.00 0.00 0.00 3.11
980 1190 1.973812 GTTGCTGGCAGGTTCTCCC 60.974 63.158 17.64 0.00 0.00 4.30
1411 1628 2.488153 GGCTGTAATTCTGCGAAAAGGT 59.512 45.455 0.00 0.00 41.02 3.50
1414 1631 2.817258 TGTAATTCTGCGAAAAGGTGGG 59.183 45.455 0.00 0.00 0.00 4.61
1513 1730 4.446371 CATTAGGTTCTCGAGGCATTCTT 58.554 43.478 13.56 0.00 0.00 2.52
1560 1777 2.259266 TGTCAGCATGCTGTCTTCAA 57.741 45.000 39.08 21.70 43.96 2.69
1613 1830 5.366460 TGTAGTGGTGAATTCCGTGTTAAA 58.634 37.500 2.27 0.00 0.00 1.52
1614 1831 5.821470 TGTAGTGGTGAATTCCGTGTTAAAA 59.179 36.000 2.27 0.00 0.00 1.52
1625 1842 9.453325 GAATTCCGTGTTAAAAACATGTTCTTA 57.547 29.630 12.39 5.84 44.91 2.10
1663 1880 8.810652 TTGTTATTAAAGGTTCAGTCATTTGC 57.189 30.769 0.00 0.00 0.00 3.68
1666 1883 8.915654 GTTATTAAAGGTTCAGTCATTTGCTTG 58.084 33.333 0.00 0.00 0.00 4.01
1740 1957 2.042831 GCCTGCTTTGAGTGCGGAT 61.043 57.895 0.00 0.00 38.99 4.18
1759 1976 4.495184 CGGATTTAGTTTAACCATGGTCGC 60.495 45.833 20.07 8.74 0.00 5.19
1793 2010 8.756927 TGCAATATTTGTTATCTTGATGGGAAA 58.243 29.630 0.00 0.00 0.00 3.13
1803 2020 9.087424 GTTATCTTGATGGGAAAGTTTATTTGC 57.913 33.333 0.00 0.00 0.00 3.68
1817 2034 5.461737 AGTTTATTTGCGTTTTGTCATGGTG 59.538 36.000 0.00 0.00 0.00 4.17
1818 2035 2.949451 TTTGCGTTTTGTCATGGTGT 57.051 40.000 0.00 0.00 0.00 4.16
1919 2145 1.607628 GCAGCAGCAAGATAAGGATGG 59.392 52.381 0.00 0.00 41.58 3.51
1924 2151 3.563390 GCAGCAAGATAAGGATGGAGTTC 59.437 47.826 0.00 0.00 0.00 3.01
1975 2203 2.165845 AGTAGTCGCAGTCACCAATACC 59.834 50.000 0.00 0.00 0.00 2.73
2002 2234 7.369803 TCTGTCTTTGAAATGCTTCATCTAC 57.630 36.000 0.00 0.00 41.22 2.59
2006 2238 6.312918 GTCTTTGAAATGCTTCATCTACGGTA 59.687 38.462 0.00 0.00 41.22 4.02
2009 2241 5.670485 TGAAATGCTTCATCTACGGTATGT 58.330 37.500 0.00 0.00 36.62 2.29
2024 2257 5.955488 ACGGTATGTCTATATTGCTAGCAG 58.045 41.667 18.45 6.02 0.00 4.24
2035 2268 9.481340 TCTATATTGCTAGCAGTTTCTTGTATG 57.519 33.333 18.58 1.68 0.00 2.39
2041 2274 5.392057 GCTAGCAGTTTCTTGTATGGGAAAC 60.392 44.000 10.63 9.62 46.56 2.78
2089 2322 2.821969 ACAGTTTCCATGATTGAGCACC 59.178 45.455 0.00 0.00 0.00 5.01
2091 2324 1.133025 GTTTCCATGATTGAGCACCGG 59.867 52.381 0.00 0.00 0.00 5.28
2112 2345 6.783977 ACCGGTATGTAGTTTCTTATATGGGA 59.216 38.462 4.49 0.00 0.00 4.37
2150 2383 8.131731 GCTTCCTAGCTTTTGGTATGAATTTAG 58.868 37.037 0.00 0.00 44.27 1.85
2181 2414 4.102996 TGTTCATAGCTGAGGGCATTCATA 59.897 41.667 0.00 0.00 44.79 2.15
2182 2415 4.548451 TCATAGCTGAGGGCATTCATAG 57.452 45.455 0.00 0.00 44.79 2.23
2183 2416 2.847327 TAGCTGAGGGCATTCATAGC 57.153 50.000 0.00 0.00 44.79 2.97
2184 2417 1.138568 AGCTGAGGGCATTCATAGCT 58.861 50.000 0.00 0.00 44.79 3.32
2185 2418 1.202782 AGCTGAGGGCATTCATAGCTG 60.203 52.381 0.00 0.00 44.79 4.24
2186 2419 1.893544 CTGAGGGCATTCATAGCTGG 58.106 55.000 0.00 0.00 0.00 4.85
2187 2420 0.475475 TGAGGGCATTCATAGCTGGG 59.525 55.000 0.00 0.00 0.00 4.45
2188 2421 0.251077 GAGGGCATTCATAGCTGGGG 60.251 60.000 0.00 0.00 0.00 4.96
2189 2422 1.228675 GGGCATTCATAGCTGGGGG 60.229 63.158 0.00 0.00 0.00 5.40
2190 2423 1.905354 GGCATTCATAGCTGGGGGC 60.905 63.158 0.00 0.00 42.19 5.80
2191 2424 1.152694 GCATTCATAGCTGGGGGCA 60.153 57.895 0.00 0.00 44.79 5.36
2192 2425 0.541296 GCATTCATAGCTGGGGGCAT 60.541 55.000 0.00 0.00 44.79 4.40
2193 2426 2.005370 CATTCATAGCTGGGGGCATT 57.995 50.000 0.00 0.00 44.79 3.56
2194 2427 1.891150 CATTCATAGCTGGGGGCATTC 59.109 52.381 0.00 0.00 44.79 2.67
2195 2428 0.925558 TTCATAGCTGGGGGCATTCA 59.074 50.000 0.00 0.00 44.79 2.57
2196 2429 1.151760 TCATAGCTGGGGGCATTCAT 58.848 50.000 0.00 0.00 44.79 2.57
2201 2434 1.006998 AGCTGGGGGCATTCATTTGTA 59.993 47.619 0.00 0.00 44.79 2.41
2212 2445 5.122082 GGCATTCATTTGTATTGTTTGTGGG 59.878 40.000 0.00 0.00 0.00 4.61
2231 2464 3.165071 GGGGACACTGGATCACAAAATT 58.835 45.455 0.00 0.00 0.00 1.82
2403 2644 8.519799 TTATATTAGCATATTAAAGGGCAGCC 57.480 34.615 1.26 1.26 0.00 4.85
2404 2645 2.001076 AGCATATTAAAGGGCAGCCC 57.999 50.000 24.90 24.90 45.90 5.19
2414 2655 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
2415 2656 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
2416 2657 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
2417 2658 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
2418 2659 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
2424 2665 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2425 2666 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2426 2667 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2427 2668 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2430 2671 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2433 2674 4.845580 CTCCCGCTTGCGCAGGAT 62.846 66.667 25.12 0.00 41.70 3.24
2434 2675 4.838152 TCCCGCTTGCGCAGGATC 62.838 66.667 25.12 5.31 37.80 3.36
2437 2678 3.570638 CGCTTGCGCAGGATCCAG 61.571 66.667 25.12 12.16 35.30 3.86
2438 2679 3.207669 GCTTGCGCAGGATCCAGG 61.208 66.667 25.12 6.81 35.78 4.45
2439 2680 2.515523 CTTGCGCAGGATCCAGGG 60.516 66.667 15.39 15.88 0.00 4.45
2440 2681 3.008517 TTGCGCAGGATCCAGGGA 61.009 61.111 23.20 6.13 0.00 4.20
2441 2682 2.541547 CTTGCGCAGGATCCAGGGAA 62.542 60.000 23.20 11.58 0.00 3.97
2442 2683 2.203126 GCGCAGGATCCAGGGAAG 60.203 66.667 23.20 5.50 0.00 3.46
2443 2684 2.507944 CGCAGGATCCAGGGAAGG 59.492 66.667 15.82 0.00 0.00 3.46
2444 2685 2.922234 GCAGGATCCAGGGAAGGG 59.078 66.667 15.82 0.00 0.00 3.95
2445 2686 2.003548 GCAGGATCCAGGGAAGGGT 61.004 63.158 15.82 0.00 0.00 4.34
2446 2687 1.988982 GCAGGATCCAGGGAAGGGTC 61.989 65.000 15.82 0.00 38.11 4.46
2448 2689 3.231298 GATCCAGGGAAGGGTCCG 58.769 66.667 0.00 0.00 46.04 4.79
2449 2690 1.382695 GATCCAGGGAAGGGTCCGA 60.383 63.158 0.00 0.00 46.04 4.55
2450 2691 1.687297 GATCCAGGGAAGGGTCCGAC 61.687 65.000 0.00 0.00 46.04 4.79
2451 2692 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2452 2693 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2453 2694 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2454 2695 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2455 2696 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2458 2699 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2472 2713 6.824704 CGACCACTTTGGGAATTAAATACCTA 59.175 38.462 0.00 0.00 43.37 3.08
2538 2779 5.826737 TGGTAGGACTAGCAGTACATTAGTC 59.173 44.000 16.77 16.77 41.49 2.59
2542 2783 4.098044 GGACTAGCAGTACATTAGTCAGCA 59.902 45.833 22.19 0.00 43.12 4.41
2715 2956 8.960591 CCTTGAACTGACAATATTTCACCTTAT 58.039 33.333 0.00 0.00 0.00 1.73
2789 3030 1.002134 CGAAGGGTGGCTGGACATT 60.002 57.895 0.00 0.00 0.00 2.71
2828 3069 7.113658 TCTCACTTTCTCTGTTAACAAGACT 57.886 36.000 10.03 0.00 0.00 3.24
2972 3329 9.851686 AAAATTCAGCTGTAATATCATCCAGTA 57.148 29.630 14.67 0.00 0.00 2.74
3047 3405 9.778741 TTGGAAGACTAGATTTTTATATCGCAT 57.221 29.630 0.00 0.00 0.00 4.73
3100 3458 9.458374 AAGTATTTTTACTGTTTCATTCCAACG 57.542 29.630 0.00 0.00 0.00 4.10
3105 3463 2.223479 ACTGTTTCATTCCAACGCACAC 60.223 45.455 0.00 0.00 0.00 3.82
3290 3648 9.199982 GCTATTTATATTTGCTGTCATTTGCAT 57.800 29.630 0.00 0.00 39.07 3.96
3309 3667 4.757657 TGCATTATGACGTTGTACCAAACT 59.242 37.500 0.00 0.00 0.00 2.66
3410 3769 4.351054 CTGGTGTGGGGCCCTGTC 62.351 72.222 25.93 14.56 0.00 3.51
3458 3817 4.494091 TGAGGAAAAAGGGATAGCAGAG 57.506 45.455 0.00 0.00 0.00 3.35
3481 3840 8.053963 AGAGATTAAGAGTAGTTACTGGTGCTA 58.946 37.037 0.00 0.00 36.50 3.49
3491 3850 9.417561 AGTAGTTACTGGTGCTATTATAGTTCA 57.582 33.333 0.00 0.00 34.72 3.18
3495 3854 9.542462 GTTACTGGTGCTATTATAGTTCATTCA 57.458 33.333 0.94 0.00 0.00 2.57
3618 3977 8.823220 ATAGTAATGCCATACTTCTTTGGTTT 57.177 30.769 4.10 0.00 37.34 3.27
3658 4017 2.224499 TGTGGTGAGCTCACTTATTGCA 60.224 45.455 38.17 26.36 45.73 4.08
3660 4019 3.441572 GTGGTGAGCTCACTTATTGCATT 59.558 43.478 38.17 0.00 45.73 3.56
4060 4429 4.158579 GGGGGAAGTTTGCTAATTCAGAAG 59.841 45.833 0.00 0.00 0.00 2.85
4090 4463 6.245408 TGGTTACATAAAGAGCTGATTGGTT 58.755 36.000 0.00 0.00 0.00 3.67
4117 4490 9.542462 AAATATGAGGCTGATTTTGAATTCATG 57.458 29.630 9.40 0.00 0.00 3.07
4127 4500 9.112789 CTGATTTTGAATTCATGCAAAACATTG 57.887 29.630 9.40 0.00 44.01 2.82
4179 4552 0.813821 GGAAAGATGCTTGGACTGCC 59.186 55.000 0.00 0.00 0.00 4.85
4317 4690 1.772063 GCGTAAACCTAGCGGCATGG 61.772 60.000 1.45 6.23 0.00 3.66
4406 4779 2.093128 ACCCCATTTTACTAGACCTGCG 60.093 50.000 0.00 0.00 0.00 5.18
4423 4796 6.767902 AGACCTGCGATGATGTAAAATAACAT 59.232 34.615 0.00 0.00 42.75 2.71
4424 4797 7.931407 AGACCTGCGATGATGTAAAATAACATA 59.069 33.333 0.00 0.00 40.17 2.29
4425 4798 8.621532 ACCTGCGATGATGTAAAATAACATAT 57.378 30.769 0.00 0.00 40.17 1.78
4427 4800 7.964559 CCTGCGATGATGTAAAATAACATATGG 59.035 37.037 7.80 0.00 40.17 2.74
4428 4801 8.614469 TGCGATGATGTAAAATAACATATGGA 57.386 30.769 7.80 0.00 40.17 3.41
4514 4888 9.868277 TTTAATAAAGATGCACAATGTAAAGGG 57.132 29.630 0.00 0.00 0.00 3.95
4537 4911 4.531426 TGGCCAACCACCACCCAC 62.531 66.667 0.61 0.00 42.67 4.61
4543 4933 0.178992 CAACCACCACCCACATCTGT 60.179 55.000 0.00 0.00 0.00 3.41
4718 5109 8.512956 GCTGAATGATGATAAATCTGTAAGCAT 58.487 33.333 0.00 0.00 0.00 3.79
4773 5628 9.788960 AGTTAGTTTGTTTTTGATTCTCTGTTC 57.211 29.630 0.00 0.00 0.00 3.18
4801 5659 5.711976 ACTATGCAAAGCTTTGTTATGGTCT 59.288 36.000 33.47 15.96 40.24 3.85
4921 5783 5.748630 CGTGCTGATAGTATGTTGCTCTTTA 59.251 40.000 0.00 0.00 0.00 1.85
5093 5955 1.462283 CTTGATCTGAACACAGTGCCG 59.538 52.381 0.00 0.00 33.82 5.69
5182 6044 1.134907 CAAACTGGATCATGCCAAGGC 60.135 52.381 3.61 3.61 37.52 4.35
5184 6046 2.124193 TGGATCATGCCAAGGCCG 60.124 61.111 8.89 0.00 41.09 6.13
5239 6101 2.417933 CTGTGCAGCCACTAACTTCATC 59.582 50.000 0.00 0.00 42.54 2.92
5278 6140 3.503748 GTCAATGGCTCTGCTGTTACTTT 59.496 43.478 0.00 0.00 0.00 2.66
5320 6182 2.096218 GTGATTCTGTTCGTGACAAGGC 60.096 50.000 0.00 0.00 37.93 4.35
5331 6193 3.052036 CGTGACAAGGCTTTGGAAATTG 58.948 45.455 13.65 0.00 38.66 2.32
5382 6244 3.843619 TGATTCCACACTTGATACCCTGA 59.156 43.478 0.00 0.00 0.00 3.86
5526 6388 1.197430 CCCTGCCAGTTCCTCACTCT 61.197 60.000 0.00 0.00 30.92 3.24
5552 6414 2.620585 TGAACATCAAACCGTGCATCAA 59.379 40.909 0.00 0.00 0.00 2.57
6029 6891 8.506437 CAGAATTCTCAAAGCACACATAGTTTA 58.494 33.333 4.57 0.00 0.00 2.01
6073 6935 2.868253 AGGAACTTAACGGGCATGC 58.132 52.632 9.90 9.90 27.25 4.06
6076 6938 2.172717 AGGAACTTAACGGGCATGCTAT 59.827 45.455 18.92 4.04 27.25 2.97
6195 7057 5.954296 ATATTGCACTCCTCATGTAATGC 57.046 39.130 0.00 0.00 46.21 3.56
6196 7058 2.785540 TGCACTCCTCATGTAATGCA 57.214 45.000 0.00 0.00 46.21 3.96
6315 7177 5.895928 TGATGAAGTATGACAGTAGAGCAC 58.104 41.667 0.00 0.00 0.00 4.40
6317 7179 5.316327 TGAAGTATGACAGTAGAGCACAG 57.684 43.478 0.00 0.00 0.00 3.66
6318 7180 3.791973 AGTATGACAGTAGAGCACAGC 57.208 47.619 0.00 0.00 0.00 4.40
6319 7181 3.092301 AGTATGACAGTAGAGCACAGCA 58.908 45.455 0.00 0.00 0.00 4.41
6320 7182 2.669300 ATGACAGTAGAGCACAGCAG 57.331 50.000 0.00 0.00 0.00 4.24
6321 7183 1.620822 TGACAGTAGAGCACAGCAGA 58.379 50.000 0.00 0.00 0.00 4.26
6322 7184 1.963515 TGACAGTAGAGCACAGCAGAA 59.036 47.619 0.00 0.00 0.00 3.02
6323 7185 2.365293 TGACAGTAGAGCACAGCAGAAA 59.635 45.455 0.00 0.00 0.00 2.52
6324 7186 2.992543 GACAGTAGAGCACAGCAGAAAG 59.007 50.000 0.00 0.00 0.00 2.62
6325 7187 2.289320 ACAGTAGAGCACAGCAGAAAGG 60.289 50.000 0.00 0.00 0.00 3.11
6381 7243 7.504238 TGGTGTATGTAGAATCAAACCAAAACT 59.496 33.333 0.00 0.00 33.67 2.66
6407 7269 1.876156 CAAACACAGCTCTTGGAGGAC 59.124 52.381 0.00 0.00 0.00 3.85
6444 7314 0.035915 GACTGAACAGAGAAGGGCCC 60.036 60.000 16.46 16.46 0.00 5.80
6478 7348 3.274288 CCCTGCCATCTCTCTTAACAAC 58.726 50.000 0.00 0.00 0.00 3.32
6480 7350 3.368427 CCTGCCATCTCTCTTAACAACGA 60.368 47.826 0.00 0.00 0.00 3.85
6573 7443 7.926555 GCAGCTTGTATACTTAACAGATAGGAA 59.073 37.037 4.17 0.00 0.00 3.36
6730 7601 7.054124 AGGTTGTTTTACTGTCTTCAATCTGA 58.946 34.615 0.00 0.00 0.00 3.27
6767 7638 6.212888 AGAAACTGTTTGCTTGATTTGAGT 57.787 33.333 11.03 0.00 0.00 3.41
6780 7651 1.452110 TTTGAGTCGTCCCATGCATG 58.548 50.000 20.19 20.19 0.00 4.06
6791 7662 1.381928 CCATGCATGTCTCTGTGGCC 61.382 60.000 24.58 0.00 0.00 5.36
6792 7663 0.678684 CATGCATGTCTCTGTGGCCA 60.679 55.000 18.91 0.00 0.00 5.36
6793 7664 0.038599 ATGCATGTCTCTGTGGCCAA 59.961 50.000 7.24 0.00 0.00 4.52
6794 7665 0.038599 TGCATGTCTCTGTGGCCAAT 59.961 50.000 7.24 0.00 0.00 3.16
6795 7666 0.454600 GCATGTCTCTGTGGCCAATG 59.545 55.000 7.24 7.03 0.00 2.82
6796 7667 1.830279 CATGTCTCTGTGGCCAATGT 58.170 50.000 7.24 0.00 0.00 2.71
6797 7668 2.165167 CATGTCTCTGTGGCCAATGTT 58.835 47.619 7.24 0.00 0.00 2.71
6798 7669 2.363306 TGTCTCTGTGGCCAATGTTT 57.637 45.000 7.24 0.00 0.00 2.83
6817 7689 7.992180 ATGTTTGAATGTTCAGTGTTTCTTC 57.008 32.000 0.00 0.00 38.61 2.87
6857 7729 5.164233 GGTAGATGCTTTTCCTTTTGCTTC 58.836 41.667 0.00 0.00 0.00 3.86
6913 7785 4.394300 AGTGAACACTTCATAGCTCAATGC 59.606 41.667 1.32 0.00 42.47 3.56
6915 7787 4.393990 TGAACACTTCATAGCTCAATGCTG 59.606 41.667 0.00 0.00 43.03 4.41
6931 7811 5.300034 TCAATGCTGTCTTATTGGCTATTGG 59.700 40.000 0.00 0.00 35.52 3.16
6942 7822 4.650972 TTGGCTATTGGTTGTACCTTCT 57.349 40.909 0.00 0.00 39.58 2.85
7002 7882 2.851195 CACTCAAAAGCTAGTGTGGGT 58.149 47.619 6.25 0.00 38.62 4.51
7003 7883 2.808543 CACTCAAAAGCTAGTGTGGGTC 59.191 50.000 6.25 0.00 38.62 4.46
7004 7884 2.438021 ACTCAAAAGCTAGTGTGGGTCA 59.562 45.455 0.00 0.00 0.00 4.02
7031 7911 4.949856 TCATGTTTGGCTTTTATCTCCTCC 59.050 41.667 0.00 0.00 0.00 4.30
7097 7981 2.871182 GTCAGATCGACATGCTACCA 57.129 50.000 11.26 0.00 44.69 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.979036 CGCAAAAATACAGCGCGC 59.021 55.556 26.66 26.66 45.14 6.86
4 5 1.983160 CAGCGCGCAAAAATACAGC 59.017 52.632 35.10 0.00 0.00 4.40
5 6 0.454957 AGCAGCGCGCAAAAATACAG 60.455 50.000 35.10 11.53 46.13 2.74
6 7 0.728803 CAGCAGCGCGCAAAAATACA 60.729 50.000 35.10 0.00 46.13 2.29
7 8 1.405469 CCAGCAGCGCGCAAAAATAC 61.405 55.000 35.10 13.50 46.13 1.89
8 9 1.154054 CCAGCAGCGCGCAAAAATA 60.154 52.632 35.10 0.00 46.13 1.40
9 10 2.431260 CCAGCAGCGCGCAAAAAT 60.431 55.556 35.10 9.38 46.13 1.82
10 11 3.541093 CTCCAGCAGCGCGCAAAAA 62.541 57.895 35.10 12.17 46.13 1.94
11 12 4.029186 CTCCAGCAGCGCGCAAAA 62.029 61.111 35.10 11.03 46.13 2.44
32 33 3.947255 CTATAATGCAGCGCGCGCG 62.947 63.158 45.73 45.73 46.97 6.86
33 34 2.202096 CTATAATGCAGCGCGCGC 60.202 61.111 45.10 45.10 46.97 6.86
34 35 2.202096 GCTATAATGCAGCGCGCG 60.202 61.111 28.44 28.44 46.97 6.86
39 40 2.174349 GCCGCGCTATAATGCAGC 59.826 61.111 5.56 0.00 35.61 5.25
40 41 1.494628 CAGCCGCGCTATAATGCAG 59.505 57.895 5.56 0.00 36.40 4.41
41 42 2.606961 GCAGCCGCGCTATAATGCA 61.607 57.895 5.56 0.00 36.40 3.96
42 43 2.174349 GCAGCCGCGCTATAATGC 59.826 61.111 5.56 4.97 36.40 3.56
43 44 0.945743 TCAGCAGCCGCGCTATAATG 60.946 55.000 5.56 0.00 45.49 1.90
44 45 0.249868 TTCAGCAGCCGCGCTATAAT 60.250 50.000 5.56 0.00 45.49 1.28
45 46 0.875908 CTTCAGCAGCCGCGCTATAA 60.876 55.000 5.56 6.67 45.49 0.98
46 47 1.300156 CTTCAGCAGCCGCGCTATA 60.300 57.895 5.56 0.09 45.49 1.31
47 48 2.587194 CTTCAGCAGCCGCGCTAT 60.587 61.111 5.56 0.00 45.49 2.97
83 84 2.785258 GCGCTTCGGCTGGTTTAG 59.215 61.111 0.00 0.00 39.13 1.85
84 85 3.115892 CGCGCTTCGGCTGGTTTA 61.116 61.111 5.56 0.00 39.13 2.01
100 101 4.622456 AAACCTGTTTGCCGCGCG 62.622 61.111 25.67 25.67 0.00 6.86
101 102 1.880796 AAAAACCTGTTTGCCGCGC 60.881 52.632 0.00 0.00 32.36 6.86
102 103 4.411136 AAAAACCTGTTTGCCGCG 57.589 50.000 0.00 0.00 32.36 6.46
130 131 1.709147 CTCCAACAGCCACGCTATGC 61.709 60.000 0.00 0.00 36.40 3.14
131 132 0.108186 TCTCCAACAGCCACGCTATG 60.108 55.000 0.00 0.00 36.40 2.23
132 133 0.833287 ATCTCCAACAGCCACGCTAT 59.167 50.000 0.00 0.00 36.40 2.97
133 134 0.108186 CATCTCCAACAGCCACGCTA 60.108 55.000 0.00 0.00 36.40 4.26
134 135 1.376424 CATCTCCAACAGCCACGCT 60.376 57.895 0.00 0.00 40.77 5.07
135 136 3.044059 GCATCTCCAACAGCCACGC 62.044 63.158 0.00 0.00 0.00 5.34
136 137 1.364626 GAGCATCTCCAACAGCCACG 61.365 60.000 0.00 0.00 0.00 4.94
137 138 0.321919 TGAGCATCTCCAACAGCCAC 60.322 55.000 0.00 0.00 34.92 5.01
138 139 0.622136 ATGAGCATCTCCAACAGCCA 59.378 50.000 0.00 0.00 34.92 4.75
139 140 2.158842 ACTATGAGCATCTCCAACAGCC 60.159 50.000 0.00 0.00 34.92 4.85
140 141 3.129871 GACTATGAGCATCTCCAACAGC 58.870 50.000 0.00 0.00 34.92 4.40
141 142 3.387374 AGGACTATGAGCATCTCCAACAG 59.613 47.826 8.86 0.00 34.92 3.16
142 143 3.378512 AGGACTATGAGCATCTCCAACA 58.621 45.455 8.86 0.00 34.92 3.33
143 144 3.551863 CGAGGACTATGAGCATCTCCAAC 60.552 52.174 8.86 3.73 34.92 3.77
144 145 2.625314 CGAGGACTATGAGCATCTCCAA 59.375 50.000 8.86 0.00 34.92 3.53
145 146 2.234143 CGAGGACTATGAGCATCTCCA 58.766 52.381 8.86 0.00 34.92 3.86
146 147 1.543802 CCGAGGACTATGAGCATCTCC 59.456 57.143 0.00 0.00 34.92 3.71
147 148 2.227865 GTCCGAGGACTATGAGCATCTC 59.772 54.545 14.61 0.00 41.57 2.75
148 149 2.235016 GTCCGAGGACTATGAGCATCT 58.765 52.381 14.61 0.00 41.57 2.90
149 150 1.271102 GGTCCGAGGACTATGAGCATC 59.729 57.143 20.27 0.00 44.04 3.91
150 151 1.333177 GGTCCGAGGACTATGAGCAT 58.667 55.000 20.27 0.00 44.04 3.79
151 152 1.101635 CGGTCCGAGGACTATGAGCA 61.102 60.000 20.27 0.00 44.04 4.26
152 153 0.818445 TCGGTCCGAGGACTATGAGC 60.818 60.000 20.27 3.48 44.04 4.26
153 154 1.807742 GATCGGTCCGAGGACTATGAG 59.192 57.143 20.50 8.49 44.04 2.90
154 155 1.876837 CGATCGGTCCGAGGACTATGA 60.877 57.143 20.50 15.71 44.04 2.15
155 156 0.517755 CGATCGGTCCGAGGACTATG 59.482 60.000 20.50 11.53 44.04 2.23
156 157 1.235948 GCGATCGGTCCGAGGACTAT 61.236 60.000 20.50 14.32 44.04 2.12
157 158 1.890979 GCGATCGGTCCGAGGACTA 60.891 63.158 20.50 10.52 44.04 2.59
158 159 2.321263 TAGCGATCGGTCCGAGGACT 62.321 60.000 24.89 17.15 44.04 3.85
159 160 1.890979 TAGCGATCGGTCCGAGGAC 60.891 63.158 24.89 13.61 39.91 3.85
160 161 1.890979 GTAGCGATCGGTCCGAGGA 60.891 63.158 24.89 1.43 39.91 3.71
161 162 2.638154 GTAGCGATCGGTCCGAGG 59.362 66.667 24.89 14.72 39.91 4.63
162 163 2.638154 GGTAGCGATCGGTCCGAG 59.362 66.667 24.89 8.16 39.91 4.63
163 164 3.274586 CGGTAGCGATCGGTCCGA 61.275 66.667 34.11 18.01 41.13 4.55
164 165 4.977126 GCGGTAGCGATCGGTCCG 62.977 72.222 33.61 33.61 38.40 4.79
193 194 1.601914 GGCAAGTTCGGACGCATTTTT 60.602 47.619 0.00 0.00 0.00 1.94
194 195 0.039527 GGCAAGTTCGGACGCATTTT 60.040 50.000 0.00 0.00 0.00 1.82
195 196 1.579429 GGCAAGTTCGGACGCATTT 59.421 52.632 0.00 0.00 0.00 2.32
196 197 2.332654 GGGCAAGTTCGGACGCATT 61.333 57.895 0.00 0.00 0.00 3.56
197 198 2.746277 GGGCAAGTTCGGACGCAT 60.746 61.111 0.00 0.00 0.00 4.73
198 199 3.876589 GAGGGCAAGTTCGGACGCA 62.877 63.158 0.00 0.00 0.00 5.24
199 200 3.119096 GAGGGCAAGTTCGGACGC 61.119 66.667 0.00 0.00 0.00 5.19
200 201 2.558554 ATCGAGGGCAAGTTCGGACG 62.559 60.000 0.00 0.00 37.42 4.79
201 202 0.458669 TATCGAGGGCAAGTTCGGAC 59.541 55.000 0.00 0.00 37.42 4.79
202 203 0.458669 GTATCGAGGGCAAGTTCGGA 59.541 55.000 0.00 0.00 37.42 4.55
203 204 0.174845 TGTATCGAGGGCAAGTTCGG 59.825 55.000 0.00 0.00 37.42 4.30
204 205 2.225068 ATGTATCGAGGGCAAGTTCG 57.775 50.000 0.00 0.00 38.13 3.95
205 206 4.965119 AAAATGTATCGAGGGCAAGTTC 57.035 40.909 0.00 0.00 0.00 3.01
206 207 5.010282 AGAAAAATGTATCGAGGGCAAGTT 58.990 37.500 0.00 0.00 0.00 2.66
207 208 4.589908 AGAAAAATGTATCGAGGGCAAGT 58.410 39.130 0.00 0.00 0.00 3.16
208 209 5.567138 AAGAAAAATGTATCGAGGGCAAG 57.433 39.130 0.00 0.00 0.00 4.01
209 210 5.242838 ACAAAGAAAAATGTATCGAGGGCAA 59.757 36.000 0.00 0.00 0.00 4.52
210 211 4.764823 ACAAAGAAAAATGTATCGAGGGCA 59.235 37.500 0.00 0.00 0.00 5.36
211 212 5.310720 ACAAAGAAAAATGTATCGAGGGC 57.689 39.130 0.00 0.00 0.00 5.19
212 213 7.094975 TGTGTACAAAGAAAAATGTATCGAGGG 60.095 37.037 0.00 0.00 34.77 4.30
213 214 7.802738 TGTGTACAAAGAAAAATGTATCGAGG 58.197 34.615 0.00 0.00 34.77 4.63
214 215 9.318041 CTTGTGTACAAAGAAAAATGTATCGAG 57.682 33.333 0.00 0.00 34.77 4.04
215 216 7.801315 GCTTGTGTACAAAGAAAAATGTATCGA 59.199 33.333 16.88 0.00 34.77 3.59
216 217 7.803189 AGCTTGTGTACAAAGAAAAATGTATCG 59.197 33.333 16.88 0.00 34.77 2.92
217 218 9.118236 GAGCTTGTGTACAAAGAAAAATGTATC 57.882 33.333 16.88 0.00 34.77 2.24
218 219 8.629158 TGAGCTTGTGTACAAAGAAAAATGTAT 58.371 29.630 16.88 0.00 34.77 2.29
219 220 7.913297 GTGAGCTTGTGTACAAAGAAAAATGTA 59.087 33.333 16.88 0.00 35.15 2.29
220 221 6.751888 GTGAGCTTGTGTACAAAGAAAAATGT 59.248 34.615 16.88 0.00 35.15 2.71
246 247 7.780271 ACAACTCTTTTCCTAGGAAACAAATCT 59.220 33.333 32.21 15.09 42.88 2.40
287 288 5.573380 TCAGATCAGATATGGAAAAGGGG 57.427 43.478 5.18 0.00 0.00 4.79
302 303 9.672673 TTCTGTATATCGTATCAGATCAGATCA 57.327 33.333 13.14 0.00 36.91 2.92
311 312 7.207383 TGGGTTTGTTCTGTATATCGTATCAG 58.793 38.462 0.00 0.00 0.00 2.90
312 313 7.114866 TGGGTTTGTTCTGTATATCGTATCA 57.885 36.000 0.00 0.00 0.00 2.15
314 315 6.463897 CCCTGGGTTTGTTCTGTATATCGTAT 60.464 42.308 3.97 0.00 0.00 3.06
315 316 5.163385 CCCTGGGTTTGTTCTGTATATCGTA 60.163 44.000 3.97 0.00 0.00 3.43
316 317 4.383770 CCCTGGGTTTGTTCTGTATATCGT 60.384 45.833 3.97 0.00 0.00 3.73
317 318 4.127171 CCCTGGGTTTGTTCTGTATATCG 58.873 47.826 3.97 0.00 0.00 2.92
318 319 5.123936 GTCCCTGGGTTTGTTCTGTATATC 58.876 45.833 13.56 0.00 0.00 1.63
319 320 4.079958 GGTCCCTGGGTTTGTTCTGTATAT 60.080 45.833 13.56 0.00 0.00 0.86
320 321 3.264964 GGTCCCTGGGTTTGTTCTGTATA 59.735 47.826 13.56 0.00 0.00 1.47
321 322 2.041216 GGTCCCTGGGTTTGTTCTGTAT 59.959 50.000 13.56 0.00 0.00 2.29
322 323 1.422402 GGTCCCTGGGTTTGTTCTGTA 59.578 52.381 13.56 0.00 0.00 2.74
323 324 0.185175 GGTCCCTGGGTTTGTTCTGT 59.815 55.000 13.56 0.00 0.00 3.41
324 325 0.889186 CGGTCCCTGGGTTTGTTCTG 60.889 60.000 13.56 0.00 0.00 3.02
325 326 1.057851 TCGGTCCCTGGGTTTGTTCT 61.058 55.000 13.56 0.00 0.00 3.01
326 327 0.887836 GTCGGTCCCTGGGTTTGTTC 60.888 60.000 13.56 0.00 0.00 3.18
335 336 2.280552 TTTCCCGAGTCGGTCCCTG 61.281 63.158 28.98 14.12 46.80 4.45
340 341 4.368543 GCCGTTTCCCGAGTCGGT 62.369 66.667 28.98 0.00 46.80 4.69
387 391 4.761304 AGGGAGGGGAGGGGAGGA 62.761 72.222 0.00 0.00 0.00 3.71
388 392 3.711782 AAGGGAGGGGAGGGGAGG 61.712 72.222 0.00 0.00 0.00 4.30
389 393 2.040359 GAAGGGAGGGGAGGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
390 394 3.707189 GGAAGGGAGGGGAGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
392 396 4.845307 GGGGAAGGGAGGGGAGGG 62.845 77.778 0.00 0.00 0.00 4.30
393 397 4.845307 GGGGGAAGGGAGGGGAGG 62.845 77.778 0.00 0.00 0.00 4.30
394 398 3.369161 ATGGGGGAAGGGAGGGGAG 62.369 68.421 0.00 0.00 0.00 4.30
395 399 3.309509 ATGGGGGAAGGGAGGGGA 61.310 66.667 0.00 0.00 0.00 4.81
396 400 2.778717 GATGGGGGAAGGGAGGGG 60.779 72.222 0.00 0.00 0.00 4.79
397 401 3.171388 CGATGGGGGAAGGGAGGG 61.171 72.222 0.00 0.00 0.00 4.30
415 420 1.104630 AAAAACCTCGCCCGTTGAAA 58.895 45.000 0.00 0.00 0.00 2.69
910 915 4.331108 AGAAGTTCAGATCAAGAAAGCCC 58.669 43.478 5.50 0.00 0.00 5.19
938 1148 2.035321 GGCGAAATCACCACAAGGAAAA 59.965 45.455 0.00 0.00 38.69 2.29
942 1152 0.609131 AGGGCGAAATCACCACAAGG 60.609 55.000 0.00 0.00 42.21 3.61
1333 1550 0.526739 GCCACAACCCACAACGAAAC 60.527 55.000 0.00 0.00 0.00 2.78
1337 1554 0.250124 TAGAGCCACAACCCACAACG 60.250 55.000 0.00 0.00 0.00 4.10
1411 1628 3.390175 TTCCTTGACCAAGAAAACCCA 57.610 42.857 11.06 0.00 40.79 4.51
1414 1631 3.069443 TGCCATTCCTTGACCAAGAAAAC 59.931 43.478 11.06 0.00 40.79 2.43
1513 1730 6.636454 AGTTCATGGAACCTATAAGAACCA 57.364 37.500 5.54 0.00 42.85 3.67
1560 1777 1.202976 AGCCATGCTTGAAACTCTGGT 60.203 47.619 0.22 0.00 33.89 4.00
1613 1830 5.797051 AGCATGCCAAATAAGAACATGTTT 58.203 33.333 15.66 0.00 40.15 2.83
1614 1831 5.186409 AGAGCATGCCAAATAAGAACATGTT 59.814 36.000 15.66 11.78 40.15 2.71
1625 1842 7.043565 CCTTTAATAACAAGAGCATGCCAAAT 58.956 34.615 15.66 0.00 0.00 2.32
1663 1880 5.221244 ACAAACTAAACTAAGCCAAGCCAAG 60.221 40.000 0.00 0.00 0.00 3.61
1666 1883 4.277423 TCACAAACTAAACTAAGCCAAGCC 59.723 41.667 0.00 0.00 0.00 4.35
1740 1957 2.743126 CCGCGACCATGGTTAAACTAAA 59.257 45.455 20.85 0.00 0.00 1.85
1759 1976 1.938814 CAAATATTGCACGGCGCCG 60.939 57.895 44.88 44.88 46.03 6.46
1793 2010 5.461737 CACCATGACAAAACGCAAATAAACT 59.538 36.000 0.00 0.00 0.00 2.66
1803 2020 2.224079 CCTCAGACACCATGACAAAACG 59.776 50.000 0.00 0.00 0.00 3.60
1817 2034 8.089597 AGCTACTAAAAGTCTAAAACCTCAGAC 58.910 37.037 0.00 0.00 41.25 3.51
1818 2035 8.191534 AGCTACTAAAAGTCTAAAACCTCAGA 57.808 34.615 0.00 0.00 0.00 3.27
1905 2131 6.765915 AAAAGAACTCCATCCTTATCTTGC 57.234 37.500 0.00 0.00 0.00 4.01
1938 2166 5.579511 GCGACTACTAAAACCATGAAGCTAA 59.420 40.000 0.00 0.00 0.00 3.09
1975 2203 5.443185 TGAAGCATTTCAAAGACAGAAGG 57.557 39.130 0.00 0.00 40.26 3.46
2002 2234 5.955488 ACTGCTAGCAATATAGACATACCG 58.045 41.667 19.86 4.09 0.00 4.02
2006 2238 7.989741 ACAAGAAACTGCTAGCAATATAGACAT 59.010 33.333 19.86 0.00 0.00 3.06
2009 2241 9.481340 CATACAAGAAACTGCTAGCAATATAGA 57.519 33.333 19.86 0.00 0.00 1.98
2035 2268 7.148423 GCACATTTCAATCAATAAAGGTTTCCC 60.148 37.037 0.00 0.00 27.96 3.97
2041 2274 6.755141 CCAGAGCACATTTCAATCAATAAAGG 59.245 38.462 0.00 0.00 0.00 3.11
2089 2322 9.720769 AATTCCCATATAAGAAACTACATACCG 57.279 33.333 0.00 0.00 0.00 4.02
2150 2383 2.270923 TCAGCTATGAACACGCATCAC 58.729 47.619 0.00 0.00 30.61 3.06
2181 2414 0.252375 ACAAATGAATGCCCCCAGCT 60.252 50.000 0.00 0.00 44.23 4.24
2182 2415 1.484038 TACAAATGAATGCCCCCAGC 58.516 50.000 0.00 0.00 44.14 4.85
2183 2416 3.451902 ACAATACAAATGAATGCCCCCAG 59.548 43.478 0.00 0.00 0.00 4.45
2184 2417 3.448934 ACAATACAAATGAATGCCCCCA 58.551 40.909 0.00 0.00 0.00 4.96
2185 2418 4.486125 AACAATACAAATGAATGCCCCC 57.514 40.909 0.00 0.00 0.00 5.40
2186 2419 5.122082 CACAAACAATACAAATGAATGCCCC 59.878 40.000 0.00 0.00 0.00 5.80
2187 2420 5.122082 CCACAAACAATACAAATGAATGCCC 59.878 40.000 0.00 0.00 0.00 5.36
2188 2421 5.122082 CCCACAAACAATACAAATGAATGCC 59.878 40.000 0.00 0.00 0.00 4.40
2189 2422 5.122082 CCCCACAAACAATACAAATGAATGC 59.878 40.000 0.00 0.00 0.00 3.56
2190 2423 6.368516 GTCCCCACAAACAATACAAATGAATG 59.631 38.462 0.00 0.00 0.00 2.67
2191 2424 6.042552 TGTCCCCACAAACAATACAAATGAAT 59.957 34.615 0.00 0.00 0.00 2.57
2192 2425 5.363868 TGTCCCCACAAACAATACAAATGAA 59.636 36.000 0.00 0.00 0.00 2.57
2193 2426 4.895889 TGTCCCCACAAACAATACAAATGA 59.104 37.500 0.00 0.00 0.00 2.57
2194 2427 4.987912 GTGTCCCCACAAACAATACAAATG 59.012 41.667 0.00 0.00 41.44 2.32
2195 2428 4.898861 AGTGTCCCCACAAACAATACAAAT 59.101 37.500 0.00 0.00 44.39 2.32
2196 2429 4.098654 CAGTGTCCCCACAAACAATACAAA 59.901 41.667 0.00 0.00 44.39 2.83
2201 2434 1.216678 TCCAGTGTCCCCACAAACAAT 59.783 47.619 0.00 0.00 44.39 2.71
2212 2445 3.989817 GCAAATTTTGTGATCCAGTGTCC 59.010 43.478 10.65 0.00 0.00 4.02
2231 2464 1.300963 GAGTGATCCAGGGCAGCAA 59.699 57.895 0.00 0.00 0.00 3.91
2319 2559 2.645838 TAAAGATGCCAGGATCCTGC 57.354 50.000 32.97 26.87 42.35 4.85
2397 2638 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
2398 2639 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
2399 2640 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
2400 2641 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
2401 2642 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
2402 2643 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2422 2663 2.515523 CCCTGGATCCTGCGCAAG 60.516 66.667 13.05 5.31 43.44 4.01
2423 2664 2.541547 CTTCCCTGGATCCTGCGCAA 62.542 60.000 13.05 0.00 0.00 4.85
2424 2665 3.008517 TTCCCTGGATCCTGCGCA 61.009 61.111 10.98 10.98 0.00 6.09
2425 2666 2.203126 CTTCCCTGGATCCTGCGC 60.203 66.667 14.23 0.00 0.00 6.09
2426 2667 2.507944 CCTTCCCTGGATCCTGCG 59.492 66.667 14.23 5.03 0.00 5.18
2427 2668 1.988982 GACCCTTCCCTGGATCCTGC 61.989 65.000 14.23 0.00 0.00 4.85
2428 2669 1.348775 GGACCCTTCCCTGGATCCTG 61.349 65.000 14.23 12.81 35.57 3.86
2429 2670 1.004891 GGACCCTTCCCTGGATCCT 59.995 63.158 14.23 0.00 35.57 3.24
2430 2671 2.444256 CGGACCCTTCCCTGGATCC 61.444 68.421 4.20 4.20 38.99 3.36
2431 2672 1.382695 TCGGACCCTTCCCTGGATC 60.383 63.158 0.00 0.00 38.99 3.36
2432 2673 1.689582 GTCGGACCCTTCCCTGGAT 60.690 63.158 0.00 0.00 38.99 3.41
2433 2674 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2434 2675 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2435 2676 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2436 2677 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2437 2678 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2438 2679 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2439 2680 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2440 2681 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2441 2682 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2442 2683 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2443 2684 0.037734 ATTCCCAAAGTGGTCGGACC 59.962 55.000 20.36 20.36 35.17 4.46
2444 2685 1.905637 AATTCCCAAAGTGGTCGGAC 58.094 50.000 0.00 0.00 35.17 4.79
2445 2686 3.791953 TTAATTCCCAAAGTGGTCGGA 57.208 42.857 0.00 0.00 35.17 4.55
2446 2687 5.163591 GGTATTTAATTCCCAAAGTGGTCGG 60.164 44.000 0.00 0.00 35.17 4.79
2447 2688 5.650703 AGGTATTTAATTCCCAAAGTGGTCG 59.349 40.000 0.00 0.00 35.17 4.79
2448 2689 7.612633 TGTAGGTATTTAATTCCCAAAGTGGTC 59.387 37.037 0.00 0.00 35.17 4.02
2449 2690 7.471890 TGTAGGTATTTAATTCCCAAAGTGGT 58.528 34.615 0.00 0.00 35.17 4.16
2450 2691 7.948034 TGTAGGTATTTAATTCCCAAAGTGG 57.052 36.000 0.00 0.00 37.25 4.00
2789 3030 8.880991 AGAAAGTGAGATAGTTACCTCTTGTA 57.119 34.615 0.00 0.00 0.00 2.41
2821 3062 7.225538 GCATTGCATGTAATAGACTAGTCTTGT 59.774 37.037 29.57 19.39 40.93 3.16
2828 3069 8.183536 CAGTTTTGCATTGCATGTAATAGACTA 58.816 33.333 12.95 0.00 38.76 2.59
2853 3094 9.869757 CATTATGAATACCGGACTATGAATACA 57.130 33.333 9.46 0.00 0.00 2.29
2854 3095 9.871238 ACATTATGAATACCGGACTATGAATAC 57.129 33.333 9.46 0.00 0.00 1.89
2950 3307 6.040504 ACGTACTGGATGATATTACAGCTGAA 59.959 38.462 23.35 10.86 34.40 3.02
2962 3319 9.173021 TGATTGAAAAATTACGTACTGGATGAT 57.827 29.630 0.00 0.00 0.00 2.45
2963 3320 8.554835 TGATTGAAAAATTACGTACTGGATGA 57.445 30.769 0.00 0.00 0.00 2.92
2972 3329 7.721286 TGGCAAATTGATTGAAAAATTACGT 57.279 28.000 0.00 0.00 41.85 3.57
3100 3458 1.298157 TAGCAGCAATCCACGTGTGC 61.298 55.000 18.87 18.87 38.59 4.57
3105 3463 2.801063 CCAAATTAGCAGCAATCCACG 58.199 47.619 0.00 0.00 0.00 4.94
3367 3725 7.918562 GTGGAAAAAGTCATTAACAGTTTAGCA 59.081 33.333 0.00 0.00 0.00 3.49
3410 3769 4.213596 TGCTGCAAATATGTAAGATGCG 57.786 40.909 0.00 0.00 39.81 4.73
3491 3850 6.403866 TCAGCATTAAACAACTGGTTGAAT 57.596 33.333 18.63 9.78 40.57 2.57
3495 3854 4.620982 GCTTCAGCATTAAACAACTGGTT 58.379 39.130 0.00 0.00 40.55 3.67
3616 3975 7.144661 CCACACTTGCATATACAGAACAAAAA 58.855 34.615 0.00 0.00 0.00 1.94
3617 3976 6.264292 ACCACACTTGCATATACAGAACAAAA 59.736 34.615 0.00 0.00 0.00 2.44
3618 3977 5.767665 ACCACACTTGCATATACAGAACAAA 59.232 36.000 0.00 0.00 0.00 2.83
3658 4017 2.894126 AGCTGCGTAGGTAGATAGCAAT 59.106 45.455 2.49 0.00 37.38 3.56
3660 4019 1.609072 CAGCTGCGTAGGTAGATAGCA 59.391 52.381 4.51 0.00 36.34 3.49
3783 4146 3.558931 TTCAAGCAAAGTCAGGAGTGA 57.441 42.857 0.00 0.00 0.00 3.41
4060 4429 6.049149 TCAGCTCTTTATGTAACCAGTATGC 58.951 40.000 0.00 0.00 31.97 3.14
4099 4472 5.866335 TTTGCATGAATTCAAAATCAGCC 57.134 34.783 13.09 0.00 30.19 4.85
4117 4490 2.810439 TGCCACCTACAATGTTTTGC 57.190 45.000 0.00 0.00 36.22 3.68
4127 4500 5.645497 GGATTCAGATGATTATGCCACCTAC 59.355 44.000 0.00 0.00 0.00 3.18
4179 4552 1.079543 CAGTGCCTGTTCCTCCTCG 60.080 63.158 0.00 0.00 0.00 4.63
4300 4673 1.014352 CACCATGCCGCTAGGTTTAC 58.986 55.000 4.78 0.00 40.50 2.01
4317 4690 3.184986 GCAACTCAATGCCATTTCAACAC 59.815 43.478 0.00 0.00 40.49 3.32
4386 4759 2.169769 TCGCAGGTCTAGTAAAATGGGG 59.830 50.000 0.00 0.00 0.00 4.96
4563 4953 4.024387 CCAACAGTAGAGCGTTTAAAAGCA 60.024 41.667 24.70 4.90 35.80 3.91
4564 4954 4.024302 ACCAACAGTAGAGCGTTTAAAAGC 60.024 41.667 17.05 17.05 0.00 3.51
4574 4965 5.932303 TGTTTATCAGAACCAACAGTAGAGC 59.068 40.000 0.00 0.00 0.00 4.09
4658 5049 7.519002 CCTGTAGTTAGTTTTTGGAGAATTCG 58.481 38.462 0.00 0.00 0.00 3.34
4718 5109 5.356426 AGTGTGCATTATGAGTAATACGCA 58.644 37.500 0.00 0.00 33.71 5.24
4773 5628 7.975616 ACCATAACAAAGCTTTGCATAGTTATG 59.024 33.333 33.72 31.48 41.80 1.90
4780 5635 5.010922 TGAAGACCATAACAAAGCTTTGCAT 59.989 36.000 33.72 25.61 41.79 3.96
4890 5752 6.019075 GCAACATACTATCAGCACGAATACAA 60.019 38.462 0.00 0.00 0.00 2.41
5182 6044 1.749033 GATAGGAACCCTGAGCCGG 59.251 63.158 0.00 0.00 34.61 6.13
5184 6046 1.439543 ATGGATAGGAACCCTGAGCC 58.560 55.000 0.00 0.00 34.61 4.70
5239 6101 3.391506 TGACCACTGATGACACTTCAG 57.608 47.619 4.79 4.79 44.95 3.02
5252 6114 0.322277 CAGCAGAGCCATTGACCACT 60.322 55.000 0.00 0.00 0.00 4.00
5278 6140 1.476845 TTCCAGACCTTGTGCCGCTA 61.477 55.000 0.00 0.00 0.00 4.26
5320 6182 8.422973 TTCATGAACAGAAACAATTTCCAAAG 57.577 30.769 3.38 0.00 40.54 2.77
5331 6193 5.299279 TGAGTCCCTTTTCATGAACAGAAAC 59.701 40.000 20.73 16.79 34.94 2.78
5382 6244 0.178903 TGAGTGCTACCAGGTTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
5526 6388 3.129462 TGCACGGTTTGATGTTCAGAAAA 59.871 39.130 0.00 0.00 0.00 2.29
5552 6414 2.502142 TCCTGCAATGCTCAGATGTT 57.498 45.000 6.82 0.00 33.54 2.71
6073 6935 3.691609 GGTTTGAGTTTCCAGCTGGATAG 59.308 47.826 35.42 8.96 44.98 2.08
6076 6938 1.214175 TGGTTTGAGTTTCCAGCTGGA 59.786 47.619 32.00 32.00 43.73 3.86
6090 6952 5.517411 TCGTATACGCTATGTTCTTGGTTTG 59.483 40.000 20.42 0.00 39.60 2.93
6091 6953 5.517770 GTCGTATACGCTATGTTCTTGGTTT 59.482 40.000 20.42 0.00 39.60 3.27
6184 7046 7.618442 GCATCAAAGAAAATGCATTACATGAG 58.382 34.615 13.39 11.95 45.97 2.90
6194 7056 4.746115 TGAACACTGCATCAAAGAAAATGC 59.254 37.500 0.51 0.51 46.68 3.56
6195 7057 5.981315 AGTGAACACTGCATCAAAGAAAATG 59.019 36.000 6.67 0.00 40.75 2.32
6196 7058 6.152932 AGTGAACACTGCATCAAAGAAAAT 57.847 33.333 6.67 0.00 40.75 1.82
6315 7177 1.451067 CTCTCAAGGCCTTTCTGCTG 58.549 55.000 17.61 4.01 0.00 4.41
6317 7179 0.322366 AGCTCTCAAGGCCTTTCTGC 60.322 55.000 17.61 17.22 0.00 4.26
6318 7180 1.736612 GAGCTCTCAAGGCCTTTCTG 58.263 55.000 17.61 5.80 0.00 3.02
6319 7181 0.248843 CGAGCTCTCAAGGCCTTTCT 59.751 55.000 17.61 7.94 0.00 2.52
6320 7182 1.365368 GCGAGCTCTCAAGGCCTTTC 61.365 60.000 17.61 9.02 0.00 2.62
6321 7183 1.376553 GCGAGCTCTCAAGGCCTTT 60.377 57.895 17.61 0.00 0.00 3.11
6322 7184 2.267324 GCGAGCTCTCAAGGCCTT 59.733 61.111 13.78 13.78 0.00 4.35
6323 7185 3.780173 GGCGAGCTCTCAAGGCCT 61.780 66.667 18.98 0.00 40.59 5.19
6325 7187 3.438017 ATCGGCGAGCTCTCAAGGC 62.438 63.158 17.22 7.09 0.00 4.35
6381 7243 3.072330 TCCAAGAGCTGTGTTTGGTATGA 59.928 43.478 12.84 0.00 41.61 2.15
6386 7248 1.202806 TCCTCCAAGAGCTGTGTTTGG 60.203 52.381 0.00 0.00 42.12 3.28
6407 7269 1.852895 GTCCTTCGATCCGATTCGTTG 59.147 52.381 5.20 0.00 40.03 4.10
6444 7314 2.897207 CAGGGTGGGCATGCATTG 59.103 61.111 21.36 4.11 0.00 2.82
6576 7446 4.141824 ACAGTTGGGCTTCTTCTATAGCTC 60.142 45.833 0.00 0.00 38.38 4.09
6767 7638 0.176449 CAGAGACATGCATGGGACGA 59.824 55.000 29.41 0.00 0.00 4.20
6780 7651 2.229792 TCAAACATTGGCCACAGAGAC 58.770 47.619 3.88 0.00 0.00 3.36
6791 7662 7.760131 AGAAACACTGAACATTCAAACATTG 57.240 32.000 0.00 0.00 36.64 2.82
6792 7663 7.220683 CGAAGAAACACTGAACATTCAAACATT 59.779 33.333 0.00 0.00 36.64 2.71
6793 7664 6.692681 CGAAGAAACACTGAACATTCAAACAT 59.307 34.615 0.00 0.00 36.64 2.71
6794 7665 6.027131 CGAAGAAACACTGAACATTCAAACA 58.973 36.000 0.00 0.00 36.64 2.83
6795 7666 6.021468 CACGAAGAAACACTGAACATTCAAAC 60.021 38.462 0.00 0.00 36.64 2.93
6796 7667 6.027131 CACGAAGAAACACTGAACATTCAAA 58.973 36.000 0.00 0.00 36.64 2.69
6797 7668 5.352846 TCACGAAGAAACACTGAACATTCAA 59.647 36.000 0.00 0.00 36.64 2.69
6798 7669 4.873259 TCACGAAGAAACACTGAACATTCA 59.127 37.500 0.00 0.00 35.57 2.57
6817 7689 5.966742 TCTACCAGATATTCATCCTCACG 57.033 43.478 0.00 0.00 0.00 4.35
6857 7729 2.679837 CGAAACCACATTCATCCTCCAG 59.320 50.000 0.00 0.00 0.00 3.86
6913 7785 6.038271 GGTACAACCAATAGCCAATAAGACAG 59.962 42.308 0.00 0.00 38.42 3.51
6915 7787 6.120220 AGGTACAACCAATAGCCAATAAGAC 58.880 40.000 0.00 0.00 41.95 3.01
6920 7792 4.949856 CAGAAGGTACAACCAATAGCCAAT 59.050 41.667 0.00 0.00 41.95 3.16
6931 7811 0.865769 CGTGGCACAGAAGGTACAAC 59.134 55.000 19.09 0.00 41.80 3.32
6942 7822 1.071542 TCTCCTTTCATTCGTGGCACA 59.928 47.619 19.09 0.00 0.00 4.57
7000 7880 4.460948 AAAGCCAAACATGATGATGACC 57.539 40.909 0.00 0.00 33.36 4.02
7002 7882 7.201848 GGAGATAAAAGCCAAACATGATGATGA 60.202 37.037 0.00 0.00 33.36 2.92
7003 7883 6.921857 GGAGATAAAAGCCAAACATGATGATG 59.078 38.462 0.00 0.00 35.49 3.07
7004 7884 6.837568 AGGAGATAAAAGCCAAACATGATGAT 59.162 34.615 0.00 0.00 0.00 2.45
7084 7968 4.890158 AATATCCATGGTAGCATGTCGA 57.110 40.909 28.09 20.76 0.00 4.20
7085 7969 7.615582 AAATAATATCCATGGTAGCATGTCG 57.384 36.000 28.09 16.81 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.