Multiple sequence alignment - TraesCS3B01G391700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G391700 chr3B 100.000 3251 0 0 1 3251 617269842 617266592 0.000000e+00 6004.0
1 TraesCS3B01G391700 chr3D 92.799 2347 94 21 633 2921 463811859 463809530 0.000000e+00 3328.0
2 TraesCS3B01G391700 chr3D 96.121 232 9 0 3019 3250 463809488 463809257 2.370000e-101 379.0
3 TraesCS3B01G391700 chr3A 90.971 2337 96 32 624 2860 606830980 606828659 0.000000e+00 3040.0
4 TraesCS3B01G391700 chr3A 83.051 236 33 6 3017 3251 606828377 606828148 1.180000e-49 207.0
5 TraesCS3B01G391700 chr4D 86.375 1167 91 32 1290 2442 42238308 42237196 0.000000e+00 1212.0
6 TraesCS3B01G391700 chr4A 85.909 1171 107 27 1290 2442 597458292 597457162 0.000000e+00 1195.0
7 TraesCS3B01G391700 chr4A 85.568 1171 111 27 1290 2442 597590707 597589577 0.000000e+00 1173.0
8 TraesCS3B01G391700 chr4A 85.495 1172 110 24 1290 2442 597637168 597636038 0.000000e+00 1168.0
9 TraesCS3B01G391700 chr4A 85.056 1171 117 27 1290 2442 597648545 597647415 0.000000e+00 1140.0
10 TraesCS3B01G391700 chr4A 84.615 624 68 11 1834 2442 597617329 597616719 2.160000e-166 595.0
11 TraesCS3B01G391700 chr4A 77.895 190 32 6 42 230 620955947 620955767 3.430000e-20 110.0
12 TraesCS3B01G391700 chr4A 84.259 108 17 0 349 456 620955704 620955597 4.440000e-19 106.0
13 TraesCS3B01G391700 chr4A 100.000 37 0 0 2464 2500 597647416 597647380 5.820000e-08 69.4
14 TraesCS3B01G391700 chr1B 85.471 998 128 14 1066 2053 511451802 511452792 0.000000e+00 1024.0
15 TraesCS3B01G391700 chr1B 88.889 45 5 0 2115 2159 511452881 511452925 4.530000e-04 56.5
16 TraesCS3B01G391700 chr1D 85.238 989 132 12 1072 2053 381313996 381314977 0.000000e+00 1005.0
17 TraesCS3B01G391700 chr1D 88.889 45 5 0 2115 2159 381315066 381315110 4.530000e-04 56.5
18 TraesCS3B01G391700 chr1A 85.654 955 119 14 1108 2053 481933033 481933978 0.000000e+00 989.0
19 TraesCS3B01G391700 chr1A 88.679 636 46 12 2 636 507751947 507752557 0.000000e+00 752.0
20 TraesCS3B01G391700 chr1A 88.889 45 5 0 2115 2159 481934067 481934111 4.530000e-04 56.5
21 TraesCS3B01G391700 chr2A 87.421 636 51 14 1 633 132163900 132164509 0.000000e+00 704.0
22 TraesCS3B01G391700 chr2A 84.906 106 16 0 349 454 101996813 101996708 1.230000e-19 108.0
23 TraesCS3B01G391700 chr4B 94.395 446 21 3 2561 3006 560558227 560557786 0.000000e+00 682.0
24 TraesCS3B01G391700 chr2B 94.357 443 22 2 2564 3006 737750966 737750527 0.000000e+00 676.0
25 TraesCS3B01G391700 chr7D 95.087 346 16 1 290 634 42921046 42920701 7.930000e-151 544.0
26 TraesCS3B01G391700 chr7D 94.981 259 13 0 1 259 42921301 42921043 1.090000e-109 407.0
27 TraesCS3B01G391700 chr7D 86.076 79 10 1 558 635 608475624 608475546 2.080000e-12 84.2
28 TraesCS3B01G391700 chr5B 87.149 498 39 15 1 497 710926656 710927129 2.850000e-150 542.0
29 TraesCS3B01G391700 chr5B 87.179 78 9 1 558 634 348477694 348477617 1.610000e-13 87.9
30 TraesCS3B01G391700 chr7B 85.391 486 35 15 1 482 725981112 725981565 3.800000e-129 472.0
31 TraesCS3B01G391700 chr5A 84.906 106 16 0 349 454 553530108 553530213 1.230000e-19 108.0
32 TraesCS3B01G391700 chr5A 83.505 97 13 3 540 634 553530294 553530389 1.610000e-13 87.9
33 TraesCS3B01G391700 chr7A 73.929 280 61 11 364 635 646277112 646276837 5.740000e-18 102.0
34 TraesCS3B01G391700 chr7A 82.653 98 14 3 544 639 1867488 1867392 2.080000e-12 84.2
35 TraesCS3B01G391700 chr6D 85.714 91 11 2 545 634 79952444 79952533 9.600000e-16 95.3
36 TraesCS3B01G391700 chr6D 82.828 99 14 3 540 636 19709074 19709171 5.780000e-13 86.1
37 TraesCS3B01G391700 chr6D 76.250 160 27 7 284 437 367295793 367295947 1.250000e-09 75.0
38 TraesCS3B01G391700 chr6B 89.831 59 4 2 454 511 34860885 34860828 1.250000e-09 75.0
39 TraesCS3B01G391700 chr6A 87.097 62 7 1 454 515 19609940 19610000 5.820000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G391700 chr3B 617266592 617269842 3250 True 6004.00 6004 100.0000 1 3251 1 chr3B.!!$R1 3250
1 TraesCS3B01G391700 chr3D 463809257 463811859 2602 True 1853.50 3328 94.4600 633 3250 2 chr3D.!!$R1 2617
2 TraesCS3B01G391700 chr3A 606828148 606830980 2832 True 1623.50 3040 87.0110 624 3251 2 chr3A.!!$R1 2627
3 TraesCS3B01G391700 chr4D 42237196 42238308 1112 True 1212.00 1212 86.3750 1290 2442 1 chr4D.!!$R1 1152
4 TraesCS3B01G391700 chr4A 597457162 597458292 1130 True 1195.00 1195 85.9090 1290 2442 1 chr4A.!!$R1 1152
5 TraesCS3B01G391700 chr4A 597589577 597590707 1130 True 1173.00 1173 85.5680 1290 2442 1 chr4A.!!$R2 1152
6 TraesCS3B01G391700 chr4A 597636038 597637168 1130 True 1168.00 1168 85.4950 1290 2442 1 chr4A.!!$R4 1152
7 TraesCS3B01G391700 chr4A 597647380 597648545 1165 True 604.70 1140 92.5280 1290 2500 2 chr4A.!!$R5 1210
8 TraesCS3B01G391700 chr4A 597616719 597617329 610 True 595.00 595 84.6150 1834 2442 1 chr4A.!!$R3 608
9 TraesCS3B01G391700 chr1B 511451802 511452925 1123 False 540.25 1024 87.1800 1066 2159 2 chr1B.!!$F1 1093
10 TraesCS3B01G391700 chr1D 381313996 381315110 1114 False 530.75 1005 87.0635 1072 2159 2 chr1D.!!$F1 1087
11 TraesCS3B01G391700 chr1A 507751947 507752557 610 False 752.00 752 88.6790 2 636 1 chr1A.!!$F1 634
12 TraesCS3B01G391700 chr1A 481933033 481934111 1078 False 522.75 989 87.2715 1108 2159 2 chr1A.!!$F2 1051
13 TraesCS3B01G391700 chr2A 132163900 132164509 609 False 704.00 704 87.4210 1 633 1 chr2A.!!$F1 632
14 TraesCS3B01G391700 chr7D 42920701 42921301 600 True 475.50 544 95.0340 1 634 2 chr7D.!!$R2 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 514 0.107848 ATCCCGTTTAGGCCTTCACG 60.108 55.0 23.28 23.28 39.21 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 2454 0.036765 ATGCCGGTGTACACATTCGT 60.037 50.0 26.51 12.73 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 2.279252 CCAATAGGTCCGACGGCG 60.279 66.667 9.66 1.94 37.24 6.46
120 121 2.505407 TCCCATGGTGAACATACCTCAG 59.495 50.000 11.73 0.00 41.43 3.35
125 126 3.239449 TGGTGAACATACCTCAGACTGT 58.761 45.455 1.59 0.00 41.43 3.55
272 283 3.749064 GCTGACGGAGCTGACGGA 61.749 66.667 11.55 0.00 45.21 4.69
273 284 2.487428 CTGACGGAGCTGACGGAG 59.513 66.667 11.55 3.98 35.23 4.63
274 285 3.057547 CTGACGGAGCTGACGGAGG 62.058 68.421 11.55 0.00 35.23 4.30
275 286 2.750637 GACGGAGCTGACGGAGGA 60.751 66.667 11.55 0.00 35.23 3.71
276 287 2.752238 ACGGAGCTGACGGAGGAG 60.752 66.667 11.55 0.00 35.23 3.69
277 288 4.200283 CGGAGCTGACGGAGGAGC 62.200 72.222 0.00 0.00 37.38 4.70
278 289 3.071206 GGAGCTGACGGAGGAGCA 61.071 66.667 0.00 0.00 39.24 4.26
279 290 2.183046 GAGCTGACGGAGGAGCAC 59.817 66.667 0.00 0.00 39.24 4.40
280 291 3.691744 GAGCTGACGGAGGAGCACG 62.692 68.421 0.00 0.00 39.24 5.34
282 293 3.753434 CTGACGGAGGAGCACGCT 61.753 66.667 0.00 0.00 0.00 5.07
283 294 3.978723 CTGACGGAGGAGCACGCTG 62.979 68.421 0.00 0.00 0.00 5.18
284 295 3.749064 GACGGAGGAGCACGCTGA 61.749 66.667 0.00 0.00 0.00 4.26
285 296 3.973267 GACGGAGGAGCACGCTGAC 62.973 68.421 0.00 0.00 0.00 3.51
287 298 4.803426 GGAGGAGCACGCTGACGG 62.803 72.222 0.00 0.00 46.04 4.79
288 299 3.749064 GAGGAGCACGCTGACGGA 61.749 66.667 0.00 0.00 46.04 4.69
289 300 3.691744 GAGGAGCACGCTGACGGAG 62.692 68.421 0.00 0.00 46.04 4.63
315 326 1.474077 GCCACCATGTCTTGTTCCATC 59.526 52.381 0.00 0.00 0.00 3.51
328 339 7.124147 TGTCTTGTTCCATCTATGTCTGTGATA 59.876 37.037 0.00 0.00 0.00 2.15
354 365 1.696832 GGCGACGCAGATGGAGAAAC 61.697 60.000 23.09 0.00 0.00 2.78
361 372 0.613260 CAGATGGAGAAACGGGGACA 59.387 55.000 0.00 0.00 0.00 4.02
362 373 0.613777 AGATGGAGAAACGGGGACAC 59.386 55.000 0.00 0.00 0.00 3.67
363 374 0.739813 GATGGAGAAACGGGGACACG 60.740 60.000 0.00 0.00 40.31 4.49
364 375 1.189524 ATGGAGAAACGGGGACACGA 61.190 55.000 0.00 0.00 37.61 4.35
365 376 1.373873 GGAGAAACGGGGACACGAC 60.374 63.158 0.00 0.00 37.61 4.34
366 377 1.731969 GAGAAACGGGGACACGACG 60.732 63.158 0.00 0.00 37.61 5.12
367 378 3.408851 GAAACGGGGACACGACGC 61.409 66.667 0.00 0.00 37.61 5.19
368 379 4.974989 AAACGGGGACACGACGCC 62.975 66.667 0.00 0.00 39.11 5.68
373 384 4.309950 GGGACACGACGCCAAGGT 62.310 66.667 0.00 0.00 0.00 3.50
374 385 2.652530 GGACACGACGCCAAGGTA 59.347 61.111 0.00 0.00 0.00 3.08
375 386 1.445582 GGACACGACGCCAAGGTAG 60.446 63.158 0.00 0.00 0.00 3.18
376 387 1.582968 GACACGACGCCAAGGTAGA 59.417 57.895 0.00 0.00 0.00 2.59
377 388 0.731855 GACACGACGCCAAGGTAGAC 60.732 60.000 0.00 0.00 0.00 2.59
378 389 1.800315 CACGACGCCAAGGTAGACG 60.800 63.158 0.00 0.00 0.00 4.18
379 390 1.968017 ACGACGCCAAGGTAGACGA 60.968 57.895 12.81 0.00 0.00 4.20
380 391 1.226323 CGACGCCAAGGTAGACGAG 60.226 63.158 0.00 0.00 0.00 4.18
381 392 1.516603 GACGCCAAGGTAGACGAGC 60.517 63.158 0.00 0.00 0.00 5.03
382 393 2.579787 CGCCAAGGTAGACGAGCG 60.580 66.667 0.00 0.00 37.39 5.03
383 394 2.886124 GCCAAGGTAGACGAGCGC 60.886 66.667 0.00 0.00 0.00 5.92
384 395 2.571757 CCAAGGTAGACGAGCGCA 59.428 61.111 11.47 0.00 0.00 6.09
385 396 1.080093 CCAAGGTAGACGAGCGCAA 60.080 57.895 11.47 0.00 0.00 4.85
386 397 1.352156 CCAAGGTAGACGAGCGCAAC 61.352 60.000 11.47 1.68 0.00 4.17
387 398 1.443872 AAGGTAGACGAGCGCAACG 60.444 57.895 21.44 21.44 0.00 4.10
388 399 2.814183 AAGGTAGACGAGCGCAACGG 62.814 60.000 25.17 8.41 34.93 4.44
389 400 2.126580 GTAGACGAGCGCAACGGT 60.127 61.111 25.17 16.58 41.33 4.83
390 401 1.731969 GTAGACGAGCGCAACGGTT 60.732 57.895 25.17 16.86 37.83 4.44
391 402 1.443194 TAGACGAGCGCAACGGTTC 60.443 57.895 25.17 16.71 37.83 3.62
392 403 4.117372 GACGAGCGCAACGGTTCG 62.117 66.667 25.17 19.32 37.83 3.95
398 409 3.470267 CGCAACGGTTCGCAGTAT 58.530 55.556 13.12 0.00 0.00 2.12
399 410 1.058748 CGCAACGGTTCGCAGTATG 59.941 57.895 13.12 0.00 40.87 2.39
400 411 1.623081 CGCAACGGTTCGCAGTATGT 61.623 55.000 13.12 0.00 39.31 2.29
409 420 3.081133 GCAGTATGTGACACGCGG 58.919 61.111 12.47 1.27 39.31 6.46
410 421 3.081133 CAGTATGTGACACGCGGC 58.919 61.111 12.47 0.00 0.00 6.53
411 422 1.736282 CAGTATGTGACACGCGGCA 60.736 57.895 12.47 2.17 0.00 5.69
412 423 1.446099 AGTATGTGACACGCGGCAG 60.446 57.895 12.47 1.86 0.00 4.85
413 424 2.813474 TATGTGACACGCGGCAGC 60.813 61.111 12.47 0.00 40.74 5.25
414 425 3.581687 TATGTGACACGCGGCAGCA 62.582 57.895 12.47 2.82 45.49 4.41
416 427 4.374702 GTGACACGCGGCAGCAAG 62.375 66.667 12.47 2.60 45.49 4.01
424 435 2.265739 CGGCAGCAAGGTCAGCTA 59.734 61.111 0.00 0.00 41.14 3.32
425 436 1.812922 CGGCAGCAAGGTCAGCTAG 60.813 63.158 0.00 0.00 41.14 3.42
426 437 1.599047 GGCAGCAAGGTCAGCTAGA 59.401 57.895 0.00 0.00 41.14 2.43
427 438 0.461693 GGCAGCAAGGTCAGCTAGAG 60.462 60.000 0.00 0.00 41.14 2.43
428 439 1.088910 GCAGCAAGGTCAGCTAGAGC 61.089 60.000 0.00 7.11 41.14 4.09
433 444 4.453093 GGTCAGCTAGAGCATGGC 57.547 61.111 4.01 1.10 44.14 4.40
434 445 1.593750 GGTCAGCTAGAGCATGGCG 60.594 63.158 4.01 0.00 44.14 5.69
435 446 1.593750 GTCAGCTAGAGCATGGCGG 60.594 63.158 4.01 0.00 45.16 6.13
436 447 2.971413 CAGCTAGAGCATGGCGGC 60.971 66.667 0.00 0.00 45.16 6.53
437 448 4.247380 AGCTAGAGCATGGCGGCC 62.247 66.667 13.32 13.32 45.16 6.13
438 449 4.552365 GCTAGAGCATGGCGGCCA 62.552 66.667 26.11 26.11 41.59 5.36
439 450 2.429058 CTAGAGCATGGCGGCCAT 59.571 61.111 28.37 28.37 46.37 4.40
446 457 3.882326 ATGGCGGCCATGGGAGAG 61.882 66.667 32.54 0.00 43.39 3.20
448 459 4.247380 GGCGGCCATGGGAGAGAG 62.247 72.222 15.62 0.00 0.00 3.20
449 460 4.925861 GCGGCCATGGGAGAGAGC 62.926 72.222 15.13 0.00 0.00 4.09
450 461 3.473647 CGGCCATGGGAGAGAGCA 61.474 66.667 15.13 0.00 0.00 4.26
451 462 3.001514 GGCCATGGGAGAGAGCAA 58.998 61.111 15.13 0.00 0.00 3.91
452 463 1.153005 GGCCATGGGAGAGAGCAAG 60.153 63.158 15.13 0.00 0.00 4.01
453 464 1.823041 GCCATGGGAGAGAGCAAGC 60.823 63.158 15.13 0.00 0.00 4.01
454 465 1.523258 CCATGGGAGAGAGCAAGCG 60.523 63.158 2.85 0.00 0.00 4.68
455 466 1.519246 CATGGGAGAGAGCAAGCGA 59.481 57.895 0.00 0.00 0.00 4.93
456 467 0.107993 CATGGGAGAGAGCAAGCGAA 60.108 55.000 0.00 0.00 0.00 4.70
457 468 0.615331 ATGGGAGAGAGCAAGCGAAA 59.385 50.000 0.00 0.00 0.00 3.46
458 469 0.615331 TGGGAGAGAGCAAGCGAAAT 59.385 50.000 0.00 0.00 0.00 2.17
459 470 1.831106 TGGGAGAGAGCAAGCGAAATA 59.169 47.619 0.00 0.00 0.00 1.40
460 471 2.159043 TGGGAGAGAGCAAGCGAAATAG 60.159 50.000 0.00 0.00 0.00 1.73
461 472 2.478831 GGAGAGAGCAAGCGAAATAGG 58.521 52.381 0.00 0.00 0.00 2.57
462 473 1.864082 GAGAGAGCAAGCGAAATAGGC 59.136 52.381 0.00 0.00 0.00 3.93
463 474 0.940833 GAGAGCAAGCGAAATAGGCC 59.059 55.000 0.00 0.00 0.00 5.19
464 475 0.811616 AGAGCAAGCGAAATAGGCCG 60.812 55.000 0.00 0.00 0.00 6.13
465 476 1.776034 GAGCAAGCGAAATAGGCCGG 61.776 60.000 0.00 0.00 0.00 6.13
466 477 2.715624 CAAGCGAAATAGGCCGGC 59.284 61.111 21.18 21.18 0.00 6.13
467 478 2.112198 CAAGCGAAATAGGCCGGCA 61.112 57.895 30.85 9.36 0.00 5.69
468 479 1.152963 AAGCGAAATAGGCCGGCAT 60.153 52.632 30.85 26.24 0.00 4.40
469 480 1.166531 AAGCGAAATAGGCCGGCATC 61.167 55.000 30.85 12.35 0.00 3.91
470 481 1.598130 GCGAAATAGGCCGGCATCT 60.598 57.895 30.85 19.77 0.00 2.90
471 482 1.166531 GCGAAATAGGCCGGCATCTT 61.167 55.000 30.85 18.34 0.00 2.40
472 483 0.588252 CGAAATAGGCCGGCATCTTG 59.412 55.000 30.85 9.69 0.00 3.02
473 484 0.954452 GAAATAGGCCGGCATCTTGG 59.046 55.000 30.85 0.00 0.00 3.61
480 491 2.621763 CCGGCATCTTGGCTCATAC 58.378 57.895 0.00 0.00 41.25 2.39
481 492 0.179048 CCGGCATCTTGGCTCATACA 60.179 55.000 0.00 0.00 41.25 2.29
482 493 1.544093 CCGGCATCTTGGCTCATACAT 60.544 52.381 0.00 0.00 41.25 2.29
483 494 2.289631 CCGGCATCTTGGCTCATACATA 60.290 50.000 0.00 0.00 41.25 2.29
484 495 3.402110 CGGCATCTTGGCTCATACATAA 58.598 45.455 0.00 0.00 41.25 1.90
485 496 4.005650 CGGCATCTTGGCTCATACATAAT 58.994 43.478 0.00 0.00 41.25 1.28
486 497 4.093998 CGGCATCTTGGCTCATACATAATC 59.906 45.833 0.00 0.00 41.25 1.75
487 498 4.397417 GGCATCTTGGCTCATACATAATCC 59.603 45.833 0.00 0.00 40.14 3.01
488 499 4.397417 GCATCTTGGCTCATACATAATCCC 59.603 45.833 0.00 0.00 0.00 3.85
489 500 4.271696 TCTTGGCTCATACATAATCCCG 57.728 45.455 0.00 0.00 0.00 5.14
490 501 3.646162 TCTTGGCTCATACATAATCCCGT 59.354 43.478 0.00 0.00 0.00 5.28
491 502 4.102524 TCTTGGCTCATACATAATCCCGTT 59.897 41.667 0.00 0.00 0.00 4.44
492 503 4.431416 TGGCTCATACATAATCCCGTTT 57.569 40.909 0.00 0.00 0.00 3.60
493 504 5.554437 TGGCTCATACATAATCCCGTTTA 57.446 39.130 0.00 0.00 0.00 2.01
494 505 5.547465 TGGCTCATACATAATCCCGTTTAG 58.453 41.667 0.00 0.00 0.00 1.85
495 506 4.935808 GGCTCATACATAATCCCGTTTAGG 59.064 45.833 0.00 0.00 40.63 2.69
496 507 4.392138 GCTCATACATAATCCCGTTTAGGC 59.608 45.833 0.00 0.00 39.21 3.93
497 508 4.901868 TCATACATAATCCCGTTTAGGCC 58.098 43.478 0.00 0.00 39.21 5.19
498 509 4.595781 TCATACATAATCCCGTTTAGGCCT 59.404 41.667 11.78 11.78 39.21 5.19
499 510 3.945640 ACATAATCCCGTTTAGGCCTT 57.054 42.857 12.58 0.00 39.21 4.35
500 511 3.816994 ACATAATCCCGTTTAGGCCTTC 58.183 45.455 12.58 0.76 39.21 3.46
501 512 3.201266 ACATAATCCCGTTTAGGCCTTCA 59.799 43.478 12.58 0.00 39.21 3.02
502 513 2.124277 AATCCCGTTTAGGCCTTCAC 57.876 50.000 12.58 7.33 39.21 3.18
503 514 0.107848 ATCCCGTTTAGGCCTTCACG 60.108 55.000 23.28 23.28 39.21 4.35
504 515 1.004200 CCCGTTTAGGCCTTCACGT 60.004 57.895 26.23 0.68 39.21 4.49
505 516 0.247185 CCCGTTTAGGCCTTCACGTA 59.753 55.000 26.23 1.23 39.21 3.57
506 517 1.353076 CCGTTTAGGCCTTCACGTAC 58.647 55.000 26.23 10.61 0.00 3.67
507 518 1.067354 CCGTTTAGGCCTTCACGTACT 60.067 52.381 26.23 0.00 0.00 2.73
508 519 1.990563 CGTTTAGGCCTTCACGTACTG 59.009 52.381 22.36 1.19 0.00 2.74
509 520 2.352030 CGTTTAGGCCTTCACGTACTGA 60.352 50.000 22.36 0.00 0.00 3.41
510 521 3.656559 GTTTAGGCCTTCACGTACTGAA 58.343 45.455 12.58 0.00 36.46 3.02
522 533 6.764877 TCACGTACTGAAGAAAAGATTCAC 57.235 37.500 0.00 0.00 38.06 3.18
523 534 6.277605 TCACGTACTGAAGAAAAGATTCACA 58.722 36.000 0.00 0.00 38.06 3.58
524 535 6.929049 TCACGTACTGAAGAAAAGATTCACAT 59.071 34.615 0.00 0.00 38.06 3.21
525 536 7.441157 TCACGTACTGAAGAAAAGATTCACATT 59.559 33.333 0.00 0.00 38.06 2.71
526 537 7.531871 CACGTACTGAAGAAAAGATTCACATTG 59.468 37.037 0.00 0.00 38.06 2.82
527 538 6.521133 CGTACTGAAGAAAAGATTCACATTGC 59.479 38.462 0.00 0.00 38.06 3.56
528 539 6.645790 ACTGAAGAAAAGATTCACATTGCT 57.354 33.333 0.00 0.00 38.06 3.91
529 540 7.047460 ACTGAAGAAAAGATTCACATTGCTT 57.953 32.000 0.00 0.00 38.06 3.91
530 541 7.495055 ACTGAAGAAAAGATTCACATTGCTTT 58.505 30.769 0.00 0.00 38.06 3.51
531 542 7.983484 ACTGAAGAAAAGATTCACATTGCTTTT 59.017 29.630 0.00 0.00 41.65 2.27
532 543 8.721019 TGAAGAAAAGATTCACATTGCTTTTT 57.279 26.923 0.00 0.00 39.77 1.94
533 544 9.814899 TGAAGAAAAGATTCACATTGCTTTTTA 57.185 25.926 0.00 0.00 39.77 1.52
539 550 9.598517 AAAGATTCACATTGCTTTTTAAGAACA 57.401 25.926 0.00 0.00 0.00 3.18
540 551 9.598517 AAGATTCACATTGCTTTTTAAGAACAA 57.401 25.926 0.00 0.00 0.00 2.83
541 552 9.598517 AGATTCACATTGCTTTTTAAGAACAAA 57.401 25.926 0.00 0.00 0.00 2.83
564 575 6.455360 AAAATGTCTATTACTGCCCACATG 57.545 37.500 0.00 0.00 0.00 3.21
565 576 5.372343 AATGTCTATTACTGCCCACATGA 57.628 39.130 0.00 0.00 0.00 3.07
566 577 4.835284 TGTCTATTACTGCCCACATGAA 57.165 40.909 0.00 0.00 0.00 2.57
567 578 5.172687 TGTCTATTACTGCCCACATGAAA 57.827 39.130 0.00 0.00 0.00 2.69
568 579 5.754782 TGTCTATTACTGCCCACATGAAAT 58.245 37.500 0.00 0.00 0.00 2.17
569 580 6.186957 TGTCTATTACTGCCCACATGAAATT 58.813 36.000 0.00 0.00 0.00 1.82
570 581 7.342581 TGTCTATTACTGCCCACATGAAATTA 58.657 34.615 0.00 0.00 0.00 1.40
571 582 7.831690 TGTCTATTACTGCCCACATGAAATTAA 59.168 33.333 0.00 0.00 0.00 1.40
572 583 8.850156 GTCTATTACTGCCCACATGAAATTAAT 58.150 33.333 0.00 0.00 0.00 1.40
573 584 8.849168 TCTATTACTGCCCACATGAAATTAATG 58.151 33.333 0.00 0.00 0.00 1.90
574 585 4.741321 ACTGCCCACATGAAATTAATGG 57.259 40.909 0.00 0.00 0.00 3.16
575 586 4.095946 ACTGCCCACATGAAATTAATGGT 58.904 39.130 0.00 0.00 0.00 3.55
576 587 5.268387 ACTGCCCACATGAAATTAATGGTA 58.732 37.500 0.00 0.00 0.00 3.25
577 588 5.360714 ACTGCCCACATGAAATTAATGGTAG 59.639 40.000 0.00 0.00 0.00 3.18
578 589 4.648762 TGCCCACATGAAATTAATGGTAGG 59.351 41.667 0.00 0.00 0.00 3.18
579 590 4.892934 GCCCACATGAAATTAATGGTAGGA 59.107 41.667 0.00 0.00 0.00 2.94
580 591 5.539955 GCCCACATGAAATTAATGGTAGGAT 59.460 40.000 0.00 0.00 0.00 3.24
581 592 6.041979 GCCCACATGAAATTAATGGTAGGATT 59.958 38.462 0.00 0.00 0.00 3.01
582 593 7.418942 GCCCACATGAAATTAATGGTAGGATTT 60.419 37.037 0.00 0.00 0.00 2.17
583 594 9.142014 CCCACATGAAATTAATGGTAGGATTTA 57.858 33.333 0.00 0.00 0.00 1.40
596 607 7.607615 TGGTAGGATTTAGTTATACTGGTCC 57.392 40.000 0.00 0.00 0.00 4.46
597 608 6.556116 TGGTAGGATTTAGTTATACTGGTCCC 59.444 42.308 0.00 0.00 29.94 4.46
598 609 6.786461 GGTAGGATTTAGTTATACTGGTCCCT 59.214 42.308 0.00 0.00 29.94 4.20
599 610 7.291885 GGTAGGATTTAGTTATACTGGTCCCTT 59.708 40.741 0.00 0.00 29.94 3.95
600 611 7.376335 AGGATTTAGTTATACTGGTCCCTTC 57.624 40.000 0.00 0.00 29.94 3.46
601 612 6.906901 AGGATTTAGTTATACTGGTCCCTTCA 59.093 38.462 0.00 0.00 29.94 3.02
602 613 6.990939 GGATTTAGTTATACTGGTCCCTTCAC 59.009 42.308 0.00 0.00 0.00 3.18
603 614 5.945144 TTAGTTATACTGGTCCCTTCACC 57.055 43.478 0.00 0.00 36.90 4.02
604 615 3.113043 AGTTATACTGGTCCCTTCACCC 58.887 50.000 0.00 0.00 35.26 4.61
605 616 2.172082 GTTATACTGGTCCCTTCACCCC 59.828 54.545 0.00 0.00 35.26 4.95
606 617 0.120377 ATACTGGTCCCTTCACCCCA 59.880 55.000 0.00 0.00 35.26 4.96
607 618 3.081554 CTGGTCCCTTCACCCCAG 58.918 66.667 0.00 0.00 38.63 4.45
608 619 3.256960 TGGTCCCTTCACCCCAGC 61.257 66.667 0.00 0.00 35.26 4.85
609 620 3.256960 GGTCCCTTCACCCCAGCA 61.257 66.667 0.00 0.00 0.00 4.41
610 621 2.352805 GTCCCTTCACCCCAGCAG 59.647 66.667 0.00 0.00 0.00 4.24
611 622 2.121963 TCCCTTCACCCCAGCAGT 60.122 61.111 0.00 0.00 0.00 4.40
612 623 1.159905 TCCCTTCACCCCAGCAGTA 59.840 57.895 0.00 0.00 0.00 2.74
613 624 0.253160 TCCCTTCACCCCAGCAGTAT 60.253 55.000 0.00 0.00 0.00 2.12
614 625 1.009060 TCCCTTCACCCCAGCAGTATA 59.991 52.381 0.00 0.00 0.00 1.47
615 626 1.417890 CCCTTCACCCCAGCAGTATAG 59.582 57.143 0.00 0.00 0.00 1.31
616 627 1.417890 CCTTCACCCCAGCAGTATAGG 59.582 57.143 0.00 0.00 0.00 2.57
617 628 1.417890 CTTCACCCCAGCAGTATAGGG 59.582 57.143 0.00 0.00 45.75 3.53
666 677 1.365633 GCGATGACCTGGCCTAGAG 59.634 63.158 3.32 0.00 0.00 2.43
760 784 4.278678 ACACACTTCGCAAAGAGAAAAG 57.721 40.909 0.00 0.00 36.30 2.27
761 785 3.038710 CACACTTCGCAAAGAGAAAAGC 58.961 45.455 0.00 0.00 36.30 3.51
762 786 2.945668 ACACTTCGCAAAGAGAAAAGCT 59.054 40.909 0.00 0.00 36.30 3.74
764 788 2.550180 ACTTCGCAAAGAGAAAAGCTCC 59.450 45.455 0.00 0.00 45.10 4.70
766 790 1.072331 TCGCAAAGAGAAAAGCTCCCT 59.928 47.619 0.00 0.00 45.10 4.20
767 791 1.882623 CGCAAAGAGAAAAGCTCCCTT 59.117 47.619 0.00 0.00 45.10 3.95
768 792 2.351157 CGCAAAGAGAAAAGCTCCCTTG 60.351 50.000 0.00 0.00 45.10 3.61
805 833 2.781595 CTTTGGGAGCTGGCGTACGT 62.782 60.000 17.90 0.00 0.00 3.57
831 859 1.470979 CGAGAATCCAACCCACCTACG 60.471 57.143 0.00 0.00 0.00 3.51
833 861 1.078708 AATCCAACCCACCTACGCG 60.079 57.895 3.53 3.53 0.00 6.01
841 869 1.516386 CCACCTACGCGCTACACAG 60.516 63.158 5.73 0.00 0.00 3.66
843 871 0.388134 CACCTACGCGCTACACAGTT 60.388 55.000 5.73 0.00 0.00 3.16
913 941 2.276282 CGCAAGAAAATCGCGGAAAATC 59.724 45.455 6.13 0.00 45.08 2.17
914 942 2.276282 GCAAGAAAATCGCGGAAAATCG 59.724 45.455 6.13 0.00 0.00 3.34
933 961 2.961721 CCCGCATCATCGTCACCG 60.962 66.667 0.00 0.00 0.00 4.94
936 964 1.226688 CGCATCATCGTCACCGTCT 60.227 57.895 0.00 0.00 35.01 4.18
937 965 1.202973 CGCATCATCGTCACCGTCTC 61.203 60.000 0.00 0.00 35.01 3.36
971 999 0.539051 CACTCCTCGGCCATCTTCTT 59.461 55.000 2.24 0.00 0.00 2.52
2094 2188 2.043248 GGAGCTACGACCCCTCCA 60.043 66.667 9.94 0.00 43.63 3.86
2148 2272 2.203788 ACGAAGCTGTCCTCCCCA 60.204 61.111 0.00 0.00 0.00 4.96
2322 2454 2.300723 TCCCCTCTCGTTTGATCGAAAA 59.699 45.455 0.00 0.00 39.34 2.29
2363 2497 2.068977 GGATTGGATTGGGGAGAGGAT 58.931 52.381 0.00 0.00 0.00 3.24
2364 2498 2.448577 GGATTGGATTGGGGAGAGGATT 59.551 50.000 0.00 0.00 0.00 3.01
2365 2499 3.499382 GGATTGGATTGGGGAGAGGATTC 60.499 52.174 0.00 0.00 0.00 2.52
2366 2500 1.522900 TGGATTGGGGAGAGGATTCC 58.477 55.000 0.00 0.00 36.46 3.01
2367 2501 0.398318 GGATTGGGGAGAGGATTCCG 59.602 60.000 0.00 0.00 38.17 4.30
2368 2502 1.132500 GATTGGGGAGAGGATTCCGT 58.868 55.000 0.00 0.00 38.17 4.69
2369 2503 1.490910 GATTGGGGAGAGGATTCCGTT 59.509 52.381 0.00 0.00 38.17 4.44
2510 2676 5.754406 TGTTGATCTTTGCAGTTCCAATTTG 59.246 36.000 0.00 0.00 0.00 2.32
2519 2685 3.806507 GCAGTTCCAATTTGCAAATGGGA 60.807 43.478 35.09 35.09 44.81 4.37
2520 2686 3.998341 CAGTTCCAATTTGCAAATGGGAG 59.002 43.478 35.73 25.63 46.46 4.30
2521 2687 3.647590 AGTTCCAATTTGCAAATGGGAGT 59.352 39.130 35.73 27.61 46.46 3.85
2533 2717 1.549203 ATGGGAGTTTGGTGTCATGC 58.451 50.000 0.00 0.00 0.00 4.06
2587 2775 2.046447 CCCTGGGTATGAGGGGATAGAT 59.954 54.545 3.97 0.00 46.01 1.98
2590 2778 4.551671 CTGGGTATGAGGGGATAGATAGG 58.448 52.174 0.00 0.00 0.00 2.57
2598 2786 3.596956 GAGGGGATAGATAGGGACAGGTA 59.403 52.174 0.00 0.00 0.00 3.08
2708 2901 0.875040 CTGCTCTACTCATGGCGCAG 60.875 60.000 10.83 0.00 38.86 5.18
2784 2977 3.357079 GGTGCAGTGCAGGAACGG 61.357 66.667 20.42 0.00 40.08 4.44
2881 3080 4.755123 TGCTAAGACAAGAAACCTAGCAAC 59.245 41.667 0.00 0.00 36.53 4.17
2933 3135 6.992063 AACTAAAATCTGATACTGGCAGTG 57.008 37.500 29.65 13.22 34.98 3.66
2936 3138 4.833478 AAATCTGATACTGGCAGTGAGT 57.167 40.909 29.65 14.57 34.98 3.41
2938 3140 6.491714 AAATCTGATACTGGCAGTGAGTAT 57.508 37.500 29.65 15.23 38.98 2.12
2940 3142 7.603180 AATCTGATACTGGCAGTGAGTATTA 57.397 36.000 29.65 10.99 36.87 0.98
2978 3231 1.994463 GGAGCACATCCTTCCTGGT 59.006 57.895 0.00 0.00 45.64 4.00
2981 3234 1.211457 GAGCACATCCTTCCTGGTCAT 59.789 52.381 0.00 0.00 37.07 3.06
3013 3266 7.420184 TGAACACTTGACAACACATATGTAG 57.580 36.000 8.32 3.01 38.45 2.74
3015 3268 6.785488 ACACTTGACAACACATATGTAGTG 57.215 37.500 22.39 22.39 40.62 2.74
3023 3377 6.631016 ACAACACATATGTAGTGACTAGTGG 58.369 40.000 19.62 7.86 38.45 4.00
3137 3491 5.309323 AGTTTTGCTATAATTTGCGAGCA 57.691 34.783 0.00 0.00 42.98 4.26
3138 3492 5.095490 AGTTTTGCTATAATTTGCGAGCAC 58.905 37.500 0.00 0.00 44.28 4.40
3141 3495 1.864711 GCTATAATTTGCGAGCACGGA 59.135 47.619 5.52 0.00 40.15 4.69
3149 3503 4.436998 CGAGCACGGAGGGTCCAC 62.437 72.222 0.00 0.00 35.91 4.02
3193 3547 1.774254 CTGGGCCTATTCCACCATGTA 59.226 52.381 4.53 0.00 31.62 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 5.010282 GGACCTATTGGAGAAGAAAAGCAA 58.990 41.667 0.00 0.00 37.04 3.91
76 77 2.020131 CGCAGGACAATGCCTCATC 58.980 57.895 0.00 0.00 43.49 2.92
120 121 2.544267 CCAGGACAAAACGAGAACAGTC 59.456 50.000 0.00 0.00 0.00 3.51
125 126 2.940410 GTGAACCAGGACAAAACGAGAA 59.060 45.455 0.00 0.00 0.00 2.87
154 156 0.040425 GCGCCAAGTTGTTTCGTCAT 60.040 50.000 0.00 0.00 0.00 3.06
259 270 2.752238 CTCCTCCGTCAGCTCCGT 60.752 66.667 2.02 0.00 0.00 4.69
260 271 4.200283 GCTCCTCCGTCAGCTCCG 62.200 72.222 0.00 0.00 32.48 4.63
261 272 3.071206 TGCTCCTCCGTCAGCTCC 61.071 66.667 0.00 0.00 36.53 4.70
262 273 2.183046 GTGCTCCTCCGTCAGCTC 59.817 66.667 0.00 0.00 36.53 4.09
263 274 3.753434 CGTGCTCCTCCGTCAGCT 61.753 66.667 0.00 0.00 36.53 4.24
265 276 3.753434 AGCGTGCTCCTCCGTCAG 61.753 66.667 0.00 0.00 0.00 3.51
266 277 4.056125 CAGCGTGCTCCTCCGTCA 62.056 66.667 0.00 0.00 0.00 4.35
267 278 3.749064 TCAGCGTGCTCCTCCGTC 61.749 66.667 0.00 0.00 0.00 4.79
268 279 4.057428 GTCAGCGTGCTCCTCCGT 62.057 66.667 0.00 0.00 0.00 4.69
270 281 4.803426 CCGTCAGCGTGCTCCTCC 62.803 72.222 0.00 0.00 36.15 4.30
271 282 3.691744 CTCCGTCAGCGTGCTCCTC 62.692 68.421 0.00 0.00 36.15 3.71
272 283 3.753434 CTCCGTCAGCGTGCTCCT 61.753 66.667 0.00 0.00 36.15 3.69
281 292 4.007644 TGGCCACAGCTCCGTCAG 62.008 66.667 0.00 0.00 39.73 3.51
282 293 4.314440 GTGGCCACAGCTCCGTCA 62.314 66.667 31.23 0.00 39.73 4.35
285 296 4.415150 ATGGTGGCCACAGCTCCG 62.415 66.667 35.78 0.00 45.14 4.63
286 297 2.753043 CATGGTGGCCACAGCTCC 60.753 66.667 35.78 19.85 45.14 4.70
287 298 2.034687 ACATGGTGGCCACAGCTC 59.965 61.111 35.78 19.62 45.14 4.09
288 299 2.034687 GACATGGTGGCCACAGCT 59.965 61.111 35.78 17.51 45.14 4.24
289 300 1.604593 AAGACATGGTGGCCACAGC 60.605 57.895 35.78 20.74 45.13 4.40
290 301 0.538057 ACAAGACATGGTGGCCACAG 60.538 55.000 35.78 25.86 35.80 3.66
291 302 0.106268 AACAAGACATGGTGGCCACA 60.106 50.000 35.78 22.39 35.80 4.17
292 303 0.598065 GAACAAGACATGGTGGCCAC 59.402 55.000 28.57 28.57 35.80 5.01
315 326 3.495100 GCCCAACCCTATCACAGACATAG 60.495 52.174 0.00 0.00 0.00 2.23
361 372 1.919956 CTCGTCTACCTTGGCGTCGT 61.920 60.000 0.00 0.00 0.00 4.34
362 373 1.226323 CTCGTCTACCTTGGCGTCG 60.226 63.158 0.00 0.00 0.00 5.12
363 374 1.516603 GCTCGTCTACCTTGGCGTC 60.517 63.158 0.00 0.00 0.00 5.19
364 375 2.572284 GCTCGTCTACCTTGGCGT 59.428 61.111 0.00 0.00 0.00 5.68
365 376 2.579787 CGCTCGTCTACCTTGGCG 60.580 66.667 0.00 0.00 36.89 5.69
366 377 2.886124 GCGCTCGTCTACCTTGGC 60.886 66.667 0.00 0.00 0.00 4.52
367 378 1.080093 TTGCGCTCGTCTACCTTGG 60.080 57.895 9.73 0.00 0.00 3.61
368 379 1.674611 CGTTGCGCTCGTCTACCTTG 61.675 60.000 9.73 0.00 0.00 3.61
369 380 1.443872 CGTTGCGCTCGTCTACCTT 60.444 57.895 9.73 0.00 0.00 3.50
370 381 2.178521 CGTTGCGCTCGTCTACCT 59.821 61.111 9.73 0.00 0.00 3.08
371 382 2.879462 CCGTTGCGCTCGTCTACC 60.879 66.667 19.75 0.00 0.00 3.18
372 383 1.671880 GAACCGTTGCGCTCGTCTAC 61.672 60.000 19.75 8.35 0.00 2.59
373 384 1.443194 GAACCGTTGCGCTCGTCTA 60.443 57.895 19.75 0.00 0.00 2.59
374 385 2.733593 GAACCGTTGCGCTCGTCT 60.734 61.111 19.75 9.54 0.00 4.18
375 386 4.117372 CGAACCGTTGCGCTCGTC 62.117 66.667 19.75 12.77 0.00 4.20
381 392 1.058748 CATACTGCGAACCGTTGCG 59.941 57.895 0.00 0.00 0.00 4.85
382 393 0.179225 CACATACTGCGAACCGTTGC 60.179 55.000 0.00 0.00 0.00 4.17
383 394 1.126113 GTCACATACTGCGAACCGTTG 59.874 52.381 0.00 0.00 0.00 4.10
384 395 1.269883 TGTCACATACTGCGAACCGTT 60.270 47.619 0.00 0.00 0.00 4.44
385 396 0.315886 TGTCACATACTGCGAACCGT 59.684 50.000 0.00 0.00 0.00 4.83
386 397 0.713883 GTGTCACATACTGCGAACCG 59.286 55.000 0.00 0.00 0.00 4.44
387 398 0.713883 CGTGTCACATACTGCGAACC 59.286 55.000 3.42 0.00 31.87 3.62
388 399 0.093026 GCGTGTCACATACTGCGAAC 59.907 55.000 3.42 0.00 31.87 3.95
389 400 2.441023 GCGTGTCACATACTGCGAA 58.559 52.632 3.42 0.00 31.87 4.70
390 401 4.162640 GCGTGTCACATACTGCGA 57.837 55.556 3.42 0.00 31.87 5.10
391 402 2.689183 CGCGTGTCACATACTGCG 59.311 61.111 0.00 7.61 43.49 5.18
392 403 3.081133 CCGCGTGTCACATACTGC 58.919 61.111 4.92 0.00 0.00 4.40
393 404 1.686566 CTGCCGCGTGTCACATACTG 61.687 60.000 4.92 0.00 0.00 2.74
394 405 1.446099 CTGCCGCGTGTCACATACT 60.446 57.895 4.92 0.00 0.00 2.12
395 406 3.081133 CTGCCGCGTGTCACATAC 58.919 61.111 4.92 0.00 0.00 2.39
396 407 2.813474 GCTGCCGCGTGTCACATA 60.813 61.111 4.92 0.00 0.00 2.29
397 408 4.986645 TGCTGCCGCGTGTCACAT 62.987 61.111 4.92 0.00 39.65 3.21
399 410 4.374702 CTTGCTGCCGCGTGTCAC 62.375 66.667 4.92 0.00 39.65 3.67
406 417 3.958147 TAGCTGACCTTGCTGCCGC 62.958 63.158 0.00 0.00 41.32 6.53
407 418 1.812922 CTAGCTGACCTTGCTGCCG 60.813 63.158 0.00 0.00 41.32 5.69
408 419 0.461693 CTCTAGCTGACCTTGCTGCC 60.462 60.000 0.00 0.00 41.32 4.85
409 420 1.088910 GCTCTAGCTGACCTTGCTGC 61.089 60.000 0.00 0.00 41.32 5.25
410 421 0.248565 TGCTCTAGCTGACCTTGCTG 59.751 55.000 0.00 0.00 41.32 4.41
411 422 1.134461 CATGCTCTAGCTGACCTTGCT 60.134 52.381 0.00 0.00 43.79 3.91
412 423 1.297664 CATGCTCTAGCTGACCTTGC 58.702 55.000 0.00 0.00 42.66 4.01
413 424 1.950828 CCATGCTCTAGCTGACCTTG 58.049 55.000 0.00 0.00 42.66 3.61
414 425 0.179936 GCCATGCTCTAGCTGACCTT 59.820 55.000 0.00 0.00 42.66 3.50
415 426 1.828768 GCCATGCTCTAGCTGACCT 59.171 57.895 0.00 0.00 42.66 3.85
416 427 1.593750 CGCCATGCTCTAGCTGACC 60.594 63.158 0.00 0.00 42.66 4.02
417 428 1.593750 CCGCCATGCTCTAGCTGAC 60.594 63.158 0.00 0.00 42.66 3.51
418 429 2.817424 CCGCCATGCTCTAGCTGA 59.183 61.111 0.00 0.00 42.66 4.26
419 430 2.971413 GCCGCCATGCTCTAGCTG 60.971 66.667 0.00 0.00 42.66 4.24
420 431 4.247380 GGCCGCCATGCTCTAGCT 62.247 66.667 3.91 0.00 42.66 3.32
421 432 3.839353 ATGGCCGCCATGCTCTAGC 62.839 63.158 24.52 0.00 43.39 3.42
422 433 2.429058 ATGGCCGCCATGCTCTAG 59.571 61.111 24.52 0.00 43.39 2.43
429 440 3.882326 CTCTCCCATGGCCGCCAT 61.882 66.667 19.79 19.79 46.37 4.40
431 442 4.247380 CTCTCTCCCATGGCCGCC 62.247 72.222 6.09 1.04 0.00 6.13
432 443 4.925861 GCTCTCTCCCATGGCCGC 62.926 72.222 6.09 0.00 0.00 6.53
433 444 2.937379 CTTGCTCTCTCCCATGGCCG 62.937 65.000 6.09 0.00 0.00 6.13
434 445 1.153005 CTTGCTCTCTCCCATGGCC 60.153 63.158 6.09 0.00 0.00 5.36
435 446 1.823041 GCTTGCTCTCTCCCATGGC 60.823 63.158 6.09 0.00 0.00 4.40
436 447 1.523258 CGCTTGCTCTCTCCCATGG 60.523 63.158 4.14 4.14 0.00 3.66
437 448 0.107993 TTCGCTTGCTCTCTCCCATG 60.108 55.000 0.00 0.00 0.00 3.66
438 449 0.615331 TTTCGCTTGCTCTCTCCCAT 59.385 50.000 0.00 0.00 0.00 4.00
439 450 0.615331 ATTTCGCTTGCTCTCTCCCA 59.385 50.000 0.00 0.00 0.00 4.37
440 451 2.478831 CTATTTCGCTTGCTCTCTCCC 58.521 52.381 0.00 0.00 0.00 4.30
441 452 2.478831 CCTATTTCGCTTGCTCTCTCC 58.521 52.381 0.00 0.00 0.00 3.71
442 453 1.864082 GCCTATTTCGCTTGCTCTCTC 59.136 52.381 0.00 0.00 0.00 3.20
443 454 1.474143 GGCCTATTTCGCTTGCTCTCT 60.474 52.381 0.00 0.00 0.00 3.10
444 455 0.940833 GGCCTATTTCGCTTGCTCTC 59.059 55.000 0.00 0.00 0.00 3.20
445 456 0.811616 CGGCCTATTTCGCTTGCTCT 60.812 55.000 0.00 0.00 0.00 4.09
446 457 1.643832 CGGCCTATTTCGCTTGCTC 59.356 57.895 0.00 0.00 0.00 4.26
447 458 1.819632 CCGGCCTATTTCGCTTGCT 60.820 57.895 0.00 0.00 0.00 3.91
448 459 2.715624 CCGGCCTATTTCGCTTGC 59.284 61.111 0.00 0.00 0.00 4.01
449 460 1.447317 ATGCCGGCCTATTTCGCTTG 61.447 55.000 26.77 0.00 0.00 4.01
450 461 1.152963 ATGCCGGCCTATTTCGCTT 60.153 52.632 26.77 0.00 0.00 4.68
451 462 1.598130 GATGCCGGCCTATTTCGCT 60.598 57.895 26.77 0.00 0.00 4.93
452 463 1.166531 AAGATGCCGGCCTATTTCGC 61.167 55.000 26.77 0.10 0.00 4.70
453 464 0.588252 CAAGATGCCGGCCTATTTCG 59.412 55.000 26.77 2.77 0.00 3.46
454 465 0.954452 CCAAGATGCCGGCCTATTTC 59.046 55.000 26.77 12.83 0.00 2.17
455 466 1.109323 GCCAAGATGCCGGCCTATTT 61.109 55.000 26.77 10.44 42.82 1.40
456 467 1.529244 GCCAAGATGCCGGCCTATT 60.529 57.895 26.77 15.82 42.82 1.73
457 468 2.113986 GCCAAGATGCCGGCCTAT 59.886 61.111 26.77 12.32 42.82 2.57
462 473 0.179048 TGTATGAGCCAAGATGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
463 474 1.888215 ATGTATGAGCCAAGATGCCG 58.112 50.000 0.00 0.00 0.00 5.69
464 475 4.397417 GGATTATGTATGAGCCAAGATGCC 59.603 45.833 0.00 0.00 0.00 4.40
465 476 4.397417 GGGATTATGTATGAGCCAAGATGC 59.603 45.833 0.00 0.00 0.00 3.91
466 477 4.633126 CGGGATTATGTATGAGCCAAGATG 59.367 45.833 0.00 0.00 0.00 2.90
467 478 4.287067 ACGGGATTATGTATGAGCCAAGAT 59.713 41.667 0.00 0.00 0.00 2.40
468 479 3.646162 ACGGGATTATGTATGAGCCAAGA 59.354 43.478 0.00 0.00 0.00 3.02
469 480 4.008074 ACGGGATTATGTATGAGCCAAG 57.992 45.455 0.00 0.00 0.00 3.61
470 481 4.431416 AACGGGATTATGTATGAGCCAA 57.569 40.909 0.00 0.00 0.00 4.52
471 482 4.431416 AAACGGGATTATGTATGAGCCA 57.569 40.909 0.00 0.00 0.00 4.75
472 483 4.935808 CCTAAACGGGATTATGTATGAGCC 59.064 45.833 0.00 0.00 0.00 4.70
473 484 4.392138 GCCTAAACGGGATTATGTATGAGC 59.608 45.833 0.00 0.00 0.00 4.26
474 485 4.935808 GGCCTAAACGGGATTATGTATGAG 59.064 45.833 0.00 0.00 0.00 2.90
475 486 4.595781 AGGCCTAAACGGGATTATGTATGA 59.404 41.667 1.29 0.00 0.00 2.15
476 487 4.906618 AGGCCTAAACGGGATTATGTATG 58.093 43.478 1.29 0.00 0.00 2.39
477 488 5.072600 TGAAGGCCTAAACGGGATTATGTAT 59.927 40.000 5.16 0.00 0.00 2.29
478 489 4.409574 TGAAGGCCTAAACGGGATTATGTA 59.590 41.667 5.16 0.00 0.00 2.29
479 490 3.201266 TGAAGGCCTAAACGGGATTATGT 59.799 43.478 5.16 0.00 0.00 2.29
480 491 3.564225 GTGAAGGCCTAAACGGGATTATG 59.436 47.826 5.16 0.00 0.00 1.90
481 492 3.743269 CGTGAAGGCCTAAACGGGATTAT 60.743 47.826 25.26 0.00 32.55 1.28
482 493 2.419021 CGTGAAGGCCTAAACGGGATTA 60.419 50.000 25.26 0.00 32.55 1.75
483 494 1.677820 CGTGAAGGCCTAAACGGGATT 60.678 52.381 25.26 0.00 32.55 3.01
484 495 0.107848 CGTGAAGGCCTAAACGGGAT 60.108 55.000 25.26 0.53 32.55 3.85
485 496 1.294138 CGTGAAGGCCTAAACGGGA 59.706 57.895 25.26 0.00 32.55 5.14
486 497 0.247185 TACGTGAAGGCCTAAACGGG 59.753 55.000 31.94 14.83 40.25 5.28
487 498 1.067354 AGTACGTGAAGGCCTAAACGG 60.067 52.381 31.94 19.68 40.25 4.44
488 499 1.990563 CAGTACGTGAAGGCCTAAACG 59.009 52.381 29.07 29.07 41.64 3.60
489 500 3.308438 TCAGTACGTGAAGGCCTAAAC 57.692 47.619 5.16 6.69 29.64 2.01
498 509 6.759356 TGTGAATCTTTTCTTCAGTACGTGAA 59.241 34.615 0.00 7.31 43.26 3.18
499 510 6.277605 TGTGAATCTTTTCTTCAGTACGTGA 58.722 36.000 0.00 0.00 33.49 4.35
500 511 6.525121 TGTGAATCTTTTCTTCAGTACGTG 57.475 37.500 0.00 0.00 33.49 4.49
501 512 7.576236 CAATGTGAATCTTTTCTTCAGTACGT 58.424 34.615 0.00 0.00 33.49 3.57
502 513 6.521133 GCAATGTGAATCTTTTCTTCAGTACG 59.479 38.462 0.00 0.00 33.49 3.67
503 514 7.588512 AGCAATGTGAATCTTTTCTTCAGTAC 58.411 34.615 0.00 0.00 33.49 2.73
504 515 7.750229 AGCAATGTGAATCTTTTCTTCAGTA 57.250 32.000 0.00 0.00 33.49 2.74
505 516 6.645790 AGCAATGTGAATCTTTTCTTCAGT 57.354 33.333 0.00 0.00 33.49 3.41
506 517 7.941795 AAAGCAATGTGAATCTTTTCTTCAG 57.058 32.000 0.00 0.00 33.49 3.02
507 518 8.721019 AAAAAGCAATGTGAATCTTTTCTTCA 57.279 26.923 0.00 0.00 37.66 3.02
513 524 9.598517 TGTTCTTAAAAAGCAATGTGAATCTTT 57.401 25.926 0.00 0.00 0.00 2.52
514 525 9.598517 TTGTTCTTAAAAAGCAATGTGAATCTT 57.401 25.926 0.00 0.00 0.00 2.40
515 526 9.598517 TTTGTTCTTAAAAAGCAATGTGAATCT 57.401 25.926 0.00 0.00 0.00 2.40
540 551 6.663093 TCATGTGGGCAGTAATAGACATTTTT 59.337 34.615 0.00 0.00 0.00 1.94
541 552 6.186957 TCATGTGGGCAGTAATAGACATTTT 58.813 36.000 0.00 0.00 0.00 1.82
542 553 5.754782 TCATGTGGGCAGTAATAGACATTT 58.245 37.500 0.00 0.00 0.00 2.32
543 554 5.372343 TCATGTGGGCAGTAATAGACATT 57.628 39.130 0.00 0.00 0.00 2.71
544 555 5.372343 TTCATGTGGGCAGTAATAGACAT 57.628 39.130 0.00 0.00 0.00 3.06
545 556 4.835284 TTCATGTGGGCAGTAATAGACA 57.165 40.909 0.00 0.00 0.00 3.41
546 557 6.699575 AATTTCATGTGGGCAGTAATAGAC 57.300 37.500 0.00 0.00 0.00 2.59
547 558 8.849168 CATTAATTTCATGTGGGCAGTAATAGA 58.151 33.333 0.00 0.00 0.00 1.98
548 559 8.084073 CCATTAATTTCATGTGGGCAGTAATAG 58.916 37.037 0.00 0.00 0.00 1.73
549 560 7.563188 ACCATTAATTTCATGTGGGCAGTAATA 59.437 33.333 0.00 0.00 34.27 0.98
550 561 6.383726 ACCATTAATTTCATGTGGGCAGTAAT 59.616 34.615 0.00 0.00 34.27 1.89
551 562 5.719085 ACCATTAATTTCATGTGGGCAGTAA 59.281 36.000 0.00 0.00 34.27 2.24
552 563 5.268387 ACCATTAATTTCATGTGGGCAGTA 58.732 37.500 0.00 0.00 34.27 2.74
553 564 4.095946 ACCATTAATTTCATGTGGGCAGT 58.904 39.130 0.00 0.00 34.27 4.40
554 565 4.741321 ACCATTAATTTCATGTGGGCAG 57.259 40.909 0.00 0.00 34.27 4.85
555 566 4.648762 CCTACCATTAATTTCATGTGGGCA 59.351 41.667 0.00 0.00 34.27 5.36
556 567 4.892934 TCCTACCATTAATTTCATGTGGGC 59.107 41.667 0.00 0.00 34.27 5.36
557 568 7.601705 AATCCTACCATTAATTTCATGTGGG 57.398 36.000 0.00 0.00 34.27 4.61
570 581 8.657712 GGACCAGTATAACTAAATCCTACCATT 58.342 37.037 0.00 0.00 0.00 3.16
571 582 7.237055 GGGACCAGTATAACTAAATCCTACCAT 59.763 40.741 0.00 0.00 0.00 3.55
572 583 6.556116 GGGACCAGTATAACTAAATCCTACCA 59.444 42.308 0.00 0.00 0.00 3.25
573 584 6.786461 AGGGACCAGTATAACTAAATCCTACC 59.214 42.308 0.00 0.00 0.00 3.18
574 585 7.852550 AGGGACCAGTATAACTAAATCCTAC 57.147 40.000 0.00 0.00 0.00 3.18
575 586 8.069356 TGAAGGGACCAGTATAACTAAATCCTA 58.931 37.037 0.00 0.00 0.00 2.94
576 587 6.906901 TGAAGGGACCAGTATAACTAAATCCT 59.093 38.462 0.00 0.00 0.00 3.24
577 588 6.990939 GTGAAGGGACCAGTATAACTAAATCC 59.009 42.308 0.00 0.00 0.00 3.01
578 589 6.990939 GGTGAAGGGACCAGTATAACTAAATC 59.009 42.308 0.00 0.00 35.88 2.17
579 590 6.126565 GGGTGAAGGGACCAGTATAACTAAAT 60.127 42.308 0.00 0.00 37.80 1.40
580 591 5.190330 GGGTGAAGGGACCAGTATAACTAAA 59.810 44.000 0.00 0.00 37.80 1.85
581 592 4.718276 GGGTGAAGGGACCAGTATAACTAA 59.282 45.833 0.00 0.00 37.80 2.24
582 593 4.292643 GGGTGAAGGGACCAGTATAACTA 58.707 47.826 0.00 0.00 37.80 2.24
583 594 3.113043 GGGTGAAGGGACCAGTATAACT 58.887 50.000 0.00 0.00 37.80 2.24
584 595 2.172082 GGGGTGAAGGGACCAGTATAAC 59.828 54.545 0.00 0.00 37.80 1.89
585 596 2.225934 TGGGGTGAAGGGACCAGTATAA 60.226 50.000 0.00 0.00 37.80 0.98
586 597 1.366787 TGGGGTGAAGGGACCAGTATA 59.633 52.381 0.00 0.00 37.80 1.47
587 598 0.120377 TGGGGTGAAGGGACCAGTAT 59.880 55.000 0.00 0.00 37.80 2.12
588 599 0.546747 CTGGGGTGAAGGGACCAGTA 60.547 60.000 0.00 0.00 44.21 2.74
589 600 1.847968 CTGGGGTGAAGGGACCAGT 60.848 63.158 0.00 0.00 44.21 4.00
590 601 3.081554 CTGGGGTGAAGGGACCAG 58.918 66.667 0.00 0.00 43.87 4.00
591 602 3.256960 GCTGGGGTGAAGGGACCA 61.257 66.667 0.00 0.00 37.80 4.02
592 603 3.256960 TGCTGGGGTGAAGGGACC 61.257 66.667 0.00 0.00 34.96 4.46
593 604 1.198759 TACTGCTGGGGTGAAGGGAC 61.199 60.000 0.00 0.00 0.00 4.46
594 605 0.253160 ATACTGCTGGGGTGAAGGGA 60.253 55.000 0.00 0.00 0.00 4.20
595 606 1.417890 CTATACTGCTGGGGTGAAGGG 59.582 57.143 0.00 0.00 0.00 3.95
596 607 1.417890 CCTATACTGCTGGGGTGAAGG 59.582 57.143 0.00 0.00 0.00 3.46
597 608 1.417890 CCCTATACTGCTGGGGTGAAG 59.582 57.143 0.00 0.00 37.37 3.02
598 609 1.507140 CCCTATACTGCTGGGGTGAA 58.493 55.000 0.00 0.00 37.37 3.18
599 610 3.240670 CCCTATACTGCTGGGGTGA 57.759 57.895 0.00 0.00 37.37 4.02
602 613 1.349067 GGTACCCTATACTGCTGGGG 58.651 60.000 0.00 0.00 44.97 4.96
603 614 0.966920 CGGTACCCTATACTGCTGGG 59.033 60.000 6.25 0.00 46.07 4.45
604 615 1.700955 ACGGTACCCTATACTGCTGG 58.299 55.000 6.25 0.00 0.00 4.85
605 616 4.924305 TTTACGGTACCCTATACTGCTG 57.076 45.455 6.25 0.00 0.00 4.41
606 617 5.937975 TTTTTACGGTACCCTATACTGCT 57.062 39.130 6.25 0.00 0.00 4.24
625 636 4.741676 CAGTGCGAAAAATGAGAGCTTTTT 59.258 37.500 0.00 0.00 38.23 1.94
626 637 4.293415 CAGTGCGAAAAATGAGAGCTTTT 58.707 39.130 0.00 0.00 0.00 2.27
627 638 3.854784 GCAGTGCGAAAAATGAGAGCTTT 60.855 43.478 0.00 0.00 0.00 3.51
628 639 2.351157 GCAGTGCGAAAAATGAGAGCTT 60.351 45.455 0.00 0.00 0.00 3.74
629 640 1.198637 GCAGTGCGAAAAATGAGAGCT 59.801 47.619 0.00 0.00 0.00 4.09
630 641 1.611043 GCAGTGCGAAAAATGAGAGC 58.389 50.000 0.00 0.00 0.00 4.09
646 657 1.068753 CTAGGCCAGGTCATCGCAG 59.931 63.158 5.01 0.00 0.00 5.18
651 662 1.490574 GTCACTCTAGGCCAGGTCAT 58.509 55.000 5.01 0.00 0.00 3.06
666 677 3.649277 ATGGTGCTCGAGGCGTCAC 62.649 63.158 15.58 13.02 45.43 3.67
760 784 0.106318 ATGGATGGAAGCAAGGGAGC 60.106 55.000 0.00 0.00 0.00 4.70
761 785 1.688772 CATGGATGGAAGCAAGGGAG 58.311 55.000 0.00 0.00 0.00 4.30
762 786 3.909587 CATGGATGGAAGCAAGGGA 57.090 52.632 0.00 0.00 0.00 4.20
774 798 2.173569 GCTCCCAAAGTCTACCATGGAT 59.826 50.000 21.47 5.32 34.82 3.41
805 833 1.143183 GGTTGGATTCTCGCGGCTA 59.857 57.895 6.13 0.00 0.00 3.93
831 859 3.011760 GCGTGGAACTGTGTAGCGC 62.012 63.158 0.00 0.00 36.75 5.92
833 861 0.673644 ATGGCGTGGAACTGTGTAGC 60.674 55.000 0.00 0.00 31.75 3.58
841 869 4.330620 TCGAGTTTATTAATGGCGTGGAAC 59.669 41.667 0.00 0.00 0.00 3.62
843 871 3.866910 GTCGAGTTTATTAATGGCGTGGA 59.133 43.478 0.00 0.00 0.00 4.02
913 941 4.889856 TGACGATGATGCGGGGCG 62.890 66.667 0.00 0.00 35.12 6.13
914 942 3.272334 GTGACGATGATGCGGGGC 61.272 66.667 0.00 0.00 35.12 5.80
971 999 0.542938 CTGGAGTGGAGTGAGGTGGA 60.543 60.000 0.00 0.00 0.00 4.02
2094 2188 3.321648 TCTGGTGTCATGGCGGCT 61.322 61.111 11.43 0.00 0.00 5.52
2159 2283 2.362120 GCTTGCTGTCCTGGCCAT 60.362 61.111 5.51 0.00 0.00 4.40
2178 2302 1.527034 TTCTTGCTGGTGCTGATGAC 58.473 50.000 0.00 0.00 40.48 3.06
2322 2454 0.036765 ATGCCGGTGTACACATTCGT 60.037 50.000 26.51 12.73 0.00 3.85
2367 2501 2.433436 ACAATGGCCTCTACGGAAAAC 58.567 47.619 3.32 0.00 33.16 2.43
2368 2502 2.871096 ACAATGGCCTCTACGGAAAA 57.129 45.000 3.32 0.00 33.16 2.29
2369 2503 2.419574 GCTACAATGGCCTCTACGGAAA 60.420 50.000 3.32 0.00 33.16 3.13
2444 2610 9.578576 AATGCATAGATTTCTACACATGGTATT 57.421 29.630 0.00 0.00 31.56 1.89
2445 2611 9.224267 GAATGCATAGATTTCTACACATGGTAT 57.776 33.333 0.00 0.00 31.56 2.73
2446 2612 7.661437 GGAATGCATAGATTTCTACACATGGTA 59.339 37.037 0.00 0.00 31.56 3.25
2447 2613 6.488006 GGAATGCATAGATTTCTACACATGGT 59.512 38.462 0.00 0.00 31.56 3.55
2448 2614 6.072286 GGGAATGCATAGATTTCTACACATGG 60.072 42.308 0.00 0.00 31.56 3.66
2449 2615 6.713903 AGGGAATGCATAGATTTCTACACATG 59.286 38.462 0.00 0.00 31.56 3.21
2450 2616 6.845908 AGGGAATGCATAGATTTCTACACAT 58.154 36.000 0.00 0.00 32.11 3.21
2451 2617 6.252599 AGGGAATGCATAGATTTCTACACA 57.747 37.500 0.00 0.00 0.00 3.72
2452 2618 7.067494 ACAAAGGGAATGCATAGATTTCTACAC 59.933 37.037 0.00 0.00 0.00 2.90
2453 2619 7.118723 ACAAAGGGAATGCATAGATTTCTACA 58.881 34.615 0.00 0.00 0.00 2.74
2454 2620 7.573968 ACAAAGGGAATGCATAGATTTCTAC 57.426 36.000 0.00 0.00 0.00 2.59
2455 2621 7.833682 TGAACAAAGGGAATGCATAGATTTCTA 59.166 33.333 0.00 0.00 0.00 2.10
2456 2622 6.664816 TGAACAAAGGGAATGCATAGATTTCT 59.335 34.615 0.00 0.00 0.00 2.52
2457 2623 6.866480 TGAACAAAGGGAATGCATAGATTTC 58.134 36.000 0.00 0.00 0.00 2.17
2458 2624 6.438425 ACTGAACAAAGGGAATGCATAGATTT 59.562 34.615 0.00 0.00 0.00 2.17
2459 2625 5.954150 ACTGAACAAAGGGAATGCATAGATT 59.046 36.000 0.00 0.00 0.00 2.40
2460 2626 5.513233 ACTGAACAAAGGGAATGCATAGAT 58.487 37.500 0.00 0.00 0.00 1.98
2461 2627 4.922206 ACTGAACAAAGGGAATGCATAGA 58.078 39.130 0.00 0.00 0.00 1.98
2462 2628 5.416952 AGAACTGAACAAAGGGAATGCATAG 59.583 40.000 0.00 0.00 0.00 2.23
2463 2629 5.183713 CAGAACTGAACAAAGGGAATGCATA 59.816 40.000 0.00 0.00 0.00 3.14
2464 2630 4.021719 CAGAACTGAACAAAGGGAATGCAT 60.022 41.667 0.00 0.00 0.00 3.96
2510 2676 1.686052 TGACACCAAACTCCCATTTGC 59.314 47.619 0.00 0.00 38.10 3.68
2519 2685 3.149196 CAGGTAAGCATGACACCAAACT 58.851 45.455 11.86 0.00 0.00 2.66
2520 2686 2.884639 ACAGGTAAGCATGACACCAAAC 59.115 45.455 11.86 0.00 0.00 2.93
2521 2687 3.222173 ACAGGTAAGCATGACACCAAA 57.778 42.857 11.86 0.00 0.00 3.28
2533 2717 1.904537 AGTCCCGGGTAAACAGGTAAG 59.095 52.381 22.86 0.00 0.00 2.34
2587 2775 3.112263 CATTCCCACTTACCTGTCCCTA 58.888 50.000 0.00 0.00 0.00 3.53
2590 2778 1.064685 CCCATTCCCACTTACCTGTCC 60.065 57.143 0.00 0.00 0.00 4.02
2598 2786 2.037847 GCCAGCCCATTCCCACTT 59.962 61.111 0.00 0.00 0.00 3.16
2708 2901 7.280205 AGGGTTCATTCAATCGTATTTACAGTC 59.720 37.037 0.00 0.00 0.00 3.51
2817 3010 3.254903 GGTTTTTGGCGTCTGAACCTTAT 59.745 43.478 10.96 0.00 37.39 1.73
2928 3130 3.993081 CTGCTAGGCATAATACTCACTGC 59.007 47.826 0.00 0.00 38.13 4.40
2933 3135 4.241681 GAGTGCTGCTAGGCATAATACTC 58.758 47.826 0.00 0.00 44.34 2.59
2936 3138 4.897509 ATGAGTGCTGCTAGGCATAATA 57.102 40.909 0.00 0.00 44.34 0.98
2938 3140 3.565764 AATGAGTGCTGCTAGGCATAA 57.434 42.857 0.00 0.00 44.34 1.90
2940 3142 2.022195 CAAATGAGTGCTGCTAGGCAT 58.978 47.619 0.00 0.00 44.34 4.40
2964 3217 4.194640 CAGTAATGACCAGGAAGGATGTG 58.805 47.826 0.00 0.00 41.22 3.21
2976 3229 6.649141 TGTCAAGTGTTCATACAGTAATGACC 59.351 38.462 0.00 0.00 41.01 4.02
2978 3231 7.713073 TGTTGTCAAGTGTTCATACAGTAATGA 59.287 33.333 0.00 0.00 36.93 2.57
2981 3234 6.819146 TGTGTTGTCAAGTGTTCATACAGTAA 59.181 34.615 0.00 0.00 36.93 2.24
3023 3377 4.051932 CCACTACCAGGGGTCTCC 57.948 66.667 0.00 0.00 32.85 3.71
3109 3463 8.035165 TCGCAAATTATAGCAAAACTACAAGA 57.965 30.769 0.00 0.00 32.32 3.02
3137 3491 1.913762 CCTTCAGTGGACCCTCCGT 60.914 63.158 0.00 0.00 40.17 4.69
3138 3492 1.913762 ACCTTCAGTGGACCCTCCG 60.914 63.158 0.00 0.00 40.17 4.63
3149 3503 2.094675 CTAAACATGGGCCACCTTCAG 58.905 52.381 9.28 0.00 37.76 3.02
3163 3517 3.053917 GGAATAGGCCCAGGAACTAAACA 60.054 47.826 0.00 0.00 36.02 2.83
3193 3547 0.842030 TGAGTCCCATGGAAGCTGGT 60.842 55.000 15.22 0.00 31.38 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.