Multiple sequence alignment - TraesCS3B01G391500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G391500 chr3B 100.000 2560 0 0 1 2560 617250634 617248075 0.000000e+00 4728.0
1 TraesCS3B01G391500 chr3B 81.679 262 36 6 1 256 776369304 776369559 9.280000e-50 207.0
2 TraesCS3B01G391500 chr3B 81.746 252 38 3 6 251 80098455 80098704 1.200000e-48 204.0
3 TraesCS3B01G391500 chr3D 91.108 1237 75 18 421 1653 463680712 463679507 0.000000e+00 1642.0
4 TraesCS3B01G391500 chr3D 84.211 266 34 3 1 260 9198585 9198848 4.230000e-63 252.0
5 TraesCS3B01G391500 chr3D 87.879 66 5 3 275 339 105701822 105701885 9.820000e-10 75.0
6 TraesCS3B01G391500 chr3A 89.919 1230 60 24 443 1651 606741283 606740097 0.000000e+00 1526.0
7 TraesCS3B01G391500 chr3A 85.921 554 47 11 1861 2391 99299397 99299942 1.720000e-156 562.0
8 TraesCS3B01G391500 chr3A 89.595 173 18 0 2388 2560 99300006 99300178 1.190000e-53 220.0
9 TraesCS3B01G391500 chr3A 79.323 266 45 3 1 256 696612509 696612774 7.280000e-41 178.0
10 TraesCS3B01G391500 chr1B 84.977 659 45 10 1767 2391 296287577 296286939 1.010000e-173 619.0
11 TraesCS3B01G391500 chr1B 88.821 492 33 7 1008 1499 192771081 192770612 3.670000e-163 584.0
12 TraesCS3B01G391500 chr6A 83.680 625 65 14 1785 2391 301953610 301954215 2.880000e-154 555.0
13 TraesCS3B01G391500 chr6A 93.064 173 12 0 2388 2560 301954278 301954450 1.180000e-63 254.0
14 TraesCS3B01G391500 chr6A 79.310 319 46 14 3 303 134951460 134951144 3.340000e-49 206.0
15 TraesCS3B01G391500 chr6B 82.723 573 73 11 1831 2389 378281746 378281186 1.060000e-133 486.0
16 TraesCS3B01G391500 chr6B 89.595 173 18 0 2388 2560 378281120 378280948 1.190000e-53 220.0
17 TraesCS3B01G391500 chr6B 79.389 262 42 6 1 256 527035503 527035758 9.420000e-40 174.0
18 TraesCS3B01G391500 chr5B 80.967 641 96 7 1775 2389 563698632 563699272 3.830000e-133 484.0
19 TraesCS3B01G391500 chr5B 79.289 647 103 12 1775 2391 563667653 563668298 8.470000e-115 424.0
20 TraesCS3B01G391500 chr6D 85.075 402 34 14 1761 2143 211446183 211446577 1.110000e-103 387.0
21 TraesCS3B01G391500 chr6D 92.857 168 12 0 2390 2557 211447099 211447266 7.080000e-61 244.0
22 TraesCS3B01G391500 chr6D 83.333 246 34 2 1 239 164814534 164814779 1.190000e-53 220.0
23 TraesCS3B01G391500 chr7D 83.905 379 34 9 1761 2113 484832077 484832454 1.130000e-88 337.0
24 TraesCS3B01G391500 chr1A 83.824 272 37 5 1 266 337303653 337303383 4.230000e-63 252.0
25 TraesCS3B01G391500 chr1A 79.592 98 7 7 215 310 266018588 266018502 9.890000e-05 58.4
26 TraesCS3B01G391500 chr2B 84.291 261 35 2 1 255 543056077 543055817 1.520000e-62 250.0
27 TraesCS3B01G391500 chr5A 83.516 273 38 3 1 266 631064477 631064205 5.470000e-62 248.0
28 TraesCS3B01G391500 chr5A 93.182 44 3 0 196 239 448539171 448539214 5.910000e-07 65.8
29 TraesCS3B01G391500 chr4D 81.703 317 41 12 1 303 501506495 501506808 5.470000e-62 248.0
30 TraesCS3B01G391500 chr4D 82.784 273 38 3 3 269 338010314 338010583 4.260000e-58 235.0
31 TraesCS3B01G391500 chr5D 81.013 316 45 6 3 303 281859809 281859494 1.180000e-58 237.0
32 TraesCS3B01G391500 chr1D 81.625 283 36 8 1 269 228076326 228076606 1.190000e-53 220.0
33 TraesCS3B01G391500 chr1D 76.797 306 34 13 4 303 194140455 194140181 1.240000e-28 137.0
34 TraesCS3B01G391500 chr7B 78.049 205 22 8 1863 2045 618792227 618792430 9.690000e-20 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G391500 chr3B 617248075 617250634 2559 True 4728.0 4728 100.000 1 2560 1 chr3B.!!$R1 2559
1 TraesCS3B01G391500 chr3D 463679507 463680712 1205 True 1642.0 1642 91.108 421 1653 1 chr3D.!!$R1 1232
2 TraesCS3B01G391500 chr3A 606740097 606741283 1186 True 1526.0 1526 89.919 443 1651 1 chr3A.!!$R1 1208
3 TraesCS3B01G391500 chr3A 99299397 99300178 781 False 391.0 562 87.758 1861 2560 2 chr3A.!!$F2 699
4 TraesCS3B01G391500 chr1B 296286939 296287577 638 True 619.0 619 84.977 1767 2391 1 chr1B.!!$R2 624
5 TraesCS3B01G391500 chr6A 301953610 301954450 840 False 404.5 555 88.372 1785 2560 2 chr6A.!!$F1 775
6 TraesCS3B01G391500 chr6B 378280948 378281746 798 True 353.0 486 86.159 1831 2560 2 chr6B.!!$R1 729
7 TraesCS3B01G391500 chr5B 563698632 563699272 640 False 484.0 484 80.967 1775 2389 1 chr5B.!!$F2 614
8 TraesCS3B01G391500 chr5B 563667653 563668298 645 False 424.0 424 79.289 1775 2391 1 chr5B.!!$F1 616
9 TraesCS3B01G391500 chr6D 211446183 211447266 1083 False 315.5 387 88.966 1761 2557 2 chr6D.!!$F2 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.036952 ATGTTGAGTCTGAGCACCCG 60.037 55.000 0.0 0.0 0.00 5.28 F
359 360 0.106708 GTCTTGGACACACAGCCTCA 59.893 55.000 0.0 0.0 32.09 3.86 F
394 395 0.108138 ACGGACACTGCTCTATTGCC 60.108 55.000 0.0 0.0 0.00 4.52 F
395 396 0.108186 CGGACACTGCTCTATTGCCA 60.108 55.000 0.0 0.0 0.00 4.92 F
1184 1210 1.066858 GGTCAGAATCGAGCAACTCCA 60.067 52.381 0.0 0.0 33.55 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 1238 0.038892 AACTGCTGGCTTGAAATGCG 60.039 50.0 0.00 0.00 37.98 4.73 R
1218 1244 0.183492 AAGTCCAACTGCTGGCTTGA 59.817 50.0 6.14 0.00 45.98 3.02 R
1219 1245 0.313043 CAAGTCCAACTGCTGGCTTG 59.687 55.0 14.99 14.99 45.98 4.01 R
1221 1247 0.403271 ATCAAGTCCAACTGCTGGCT 59.597 50.0 0.00 0.00 45.98 4.75 R
2441 2793 0.036732 GGCTCATCCCCGCATCAATA 59.963 55.0 0.00 0.00 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.649977 GCGTGATGATAGTATCTACGACC 58.350 47.826 25.27 13.34 35.55 4.79
23 24 4.153655 GCGTGATGATAGTATCTACGACCA 59.846 45.833 25.27 9.39 35.55 4.02
24 25 5.334646 GCGTGATGATAGTATCTACGACCAA 60.335 44.000 25.27 3.24 35.55 3.67
25 26 6.307915 CGTGATGATAGTATCTACGACCAAG 58.692 44.000 20.49 7.12 35.55 3.61
26 27 6.613233 GTGATGATAGTATCTACGACCAAGG 58.387 44.000 11.40 0.00 0.00 3.61
27 28 6.430308 GTGATGATAGTATCTACGACCAAGGA 59.570 42.308 11.40 0.00 0.00 3.36
28 29 7.121463 GTGATGATAGTATCTACGACCAAGGAT 59.879 40.741 11.40 0.00 0.00 3.24
29 30 7.670140 TGATGATAGTATCTACGACCAAGGATT 59.330 37.037 11.40 0.00 0.00 3.01
30 31 7.834881 TGATAGTATCTACGACCAAGGATTT 57.165 36.000 11.40 0.00 0.00 2.17
31 32 7.658261 TGATAGTATCTACGACCAAGGATTTG 58.342 38.462 11.40 0.00 0.00 2.32
32 33 7.504574 TGATAGTATCTACGACCAAGGATTTGA 59.495 37.037 11.40 0.00 36.36 2.69
33 34 6.732896 AGTATCTACGACCAAGGATTTGAT 57.267 37.500 0.00 0.00 36.36 2.57
34 35 7.125792 AGTATCTACGACCAAGGATTTGATT 57.874 36.000 0.00 0.00 36.36 2.57
35 36 7.565680 AGTATCTACGACCAAGGATTTGATTT 58.434 34.615 0.00 0.00 36.36 2.17
36 37 8.047310 AGTATCTACGACCAAGGATTTGATTTT 58.953 33.333 0.00 0.00 36.36 1.82
37 38 6.737254 TCTACGACCAAGGATTTGATTTTC 57.263 37.500 0.00 0.00 36.36 2.29
38 39 6.234920 TCTACGACCAAGGATTTGATTTTCA 58.765 36.000 0.00 0.00 36.36 2.69
39 40 5.376854 ACGACCAAGGATTTGATTTTCAG 57.623 39.130 0.00 0.00 36.36 3.02
40 41 4.218417 ACGACCAAGGATTTGATTTTCAGG 59.782 41.667 0.00 0.00 36.36 3.86
41 42 4.380867 CGACCAAGGATTTGATTTTCAGGG 60.381 45.833 0.00 0.00 36.36 4.45
42 43 4.492646 ACCAAGGATTTGATTTTCAGGGT 58.507 39.130 0.00 0.00 36.36 4.34
43 44 4.284234 ACCAAGGATTTGATTTTCAGGGTG 59.716 41.667 0.00 0.00 36.36 4.61
44 45 4.527816 CCAAGGATTTGATTTTCAGGGTGA 59.472 41.667 0.00 0.00 36.36 4.02
45 46 5.011943 CCAAGGATTTGATTTTCAGGGTGAA 59.988 40.000 0.00 0.00 36.36 3.18
46 47 6.464180 CCAAGGATTTGATTTTCAGGGTGAAA 60.464 38.462 0.00 0.00 39.24 2.69
56 57 5.514274 TTTCAGGGTGAAAATGTTGAGTC 57.486 39.130 0.00 0.00 42.72 3.36
57 58 4.437682 TCAGGGTGAAAATGTTGAGTCT 57.562 40.909 0.00 0.00 0.00 3.24
58 59 4.136796 TCAGGGTGAAAATGTTGAGTCTG 58.863 43.478 0.00 0.00 0.00 3.51
59 60 4.136796 CAGGGTGAAAATGTTGAGTCTGA 58.863 43.478 0.00 0.00 0.00 3.27
60 61 4.214971 CAGGGTGAAAATGTTGAGTCTGAG 59.785 45.833 0.00 0.00 0.00 3.35
61 62 3.057946 GGGTGAAAATGTTGAGTCTGAGC 60.058 47.826 0.00 0.00 0.00 4.26
62 63 3.565482 GGTGAAAATGTTGAGTCTGAGCA 59.435 43.478 0.00 0.00 0.00 4.26
63 64 4.531332 GTGAAAATGTTGAGTCTGAGCAC 58.469 43.478 0.00 0.00 0.00 4.40
64 65 3.565482 TGAAAATGTTGAGTCTGAGCACC 59.435 43.478 0.00 0.00 0.00 5.01
65 66 2.191128 AATGTTGAGTCTGAGCACCC 57.809 50.000 0.00 0.00 0.00 4.61
66 67 0.036952 ATGTTGAGTCTGAGCACCCG 60.037 55.000 0.00 0.00 0.00 5.28
67 68 2.029844 GTTGAGTCTGAGCACCCGC 61.030 63.158 0.00 0.00 38.99 6.13
68 69 3.240134 TTGAGTCTGAGCACCCGCC 62.240 63.158 0.00 0.00 39.83 6.13
69 70 3.386237 GAGTCTGAGCACCCGCCT 61.386 66.667 0.00 0.00 39.83 5.52
70 71 3.363844 GAGTCTGAGCACCCGCCTC 62.364 68.421 0.00 0.00 39.83 4.70
71 72 4.459089 GTCTGAGCACCCGCCTCC 62.459 72.222 0.00 0.00 39.83 4.30
72 73 4.704103 TCTGAGCACCCGCCTCCT 62.704 66.667 0.00 0.00 39.83 3.69
73 74 4.463879 CTGAGCACCCGCCTCCTG 62.464 72.222 0.00 0.00 39.83 3.86
78 79 3.365265 CACCCGCCTCCTGCAAAC 61.365 66.667 0.00 0.00 41.33 2.93
79 80 3.570212 ACCCGCCTCCTGCAAACT 61.570 61.111 0.00 0.00 41.33 2.66
80 81 2.282462 CCCGCCTCCTGCAAACTT 60.282 61.111 0.00 0.00 41.33 2.66
81 82 1.903404 CCCGCCTCCTGCAAACTTT 60.903 57.895 0.00 0.00 41.33 2.66
82 83 1.581447 CCGCCTCCTGCAAACTTTC 59.419 57.895 0.00 0.00 41.33 2.62
83 84 1.172180 CCGCCTCCTGCAAACTTTCA 61.172 55.000 0.00 0.00 41.33 2.69
84 85 0.667993 CGCCTCCTGCAAACTTTCAA 59.332 50.000 0.00 0.00 41.33 2.69
85 86 1.600413 CGCCTCCTGCAAACTTTCAAC 60.600 52.381 0.00 0.00 41.33 3.18
86 87 1.408702 GCCTCCTGCAAACTTTCAACA 59.591 47.619 0.00 0.00 40.77 3.33
87 88 2.544486 GCCTCCTGCAAACTTTCAACAG 60.544 50.000 0.00 0.00 40.77 3.16
88 89 2.689983 CCTCCTGCAAACTTTCAACAGT 59.310 45.455 0.00 0.00 0.00 3.55
89 90 3.131046 CCTCCTGCAAACTTTCAACAGTT 59.869 43.478 0.00 0.00 38.74 3.16
90 91 4.381932 CCTCCTGCAAACTTTCAACAGTTT 60.382 41.667 0.00 0.00 46.00 2.66
100 101 7.637709 AACTTTCAACAGTTTGTTCACTTTC 57.362 32.000 0.00 0.00 38.77 2.62
101 102 6.744112 ACTTTCAACAGTTTGTTCACTTTCA 58.256 32.000 0.00 0.00 38.77 2.69
102 103 7.378181 ACTTTCAACAGTTTGTTCACTTTCAT 58.622 30.769 0.00 0.00 38.77 2.57
103 104 7.542130 ACTTTCAACAGTTTGTTCACTTTCATC 59.458 33.333 0.00 0.00 38.77 2.92
104 105 5.568482 TCAACAGTTTGTTCACTTTCATCG 58.432 37.500 0.00 0.00 38.77 3.84
105 106 5.123186 TCAACAGTTTGTTCACTTTCATCGT 59.877 36.000 0.00 0.00 38.77 3.73
106 107 4.908736 ACAGTTTGTTCACTTTCATCGTG 58.091 39.130 0.00 0.00 0.00 4.35
107 108 4.634004 ACAGTTTGTTCACTTTCATCGTGA 59.366 37.500 0.00 0.00 39.45 4.35
108 109 5.123186 ACAGTTTGTTCACTTTCATCGTGAA 59.877 36.000 1.82 1.82 45.97 3.18
134 135 9.705290 AATACGTGATTAACATACTCATATGCA 57.295 29.630 0.00 0.00 41.83 3.96
135 136 7.643528 ACGTGATTAACATACTCATATGCAG 57.356 36.000 0.00 0.00 41.83 4.41
136 137 6.146184 ACGTGATTAACATACTCATATGCAGC 59.854 38.462 0.00 0.00 41.83 5.25
137 138 6.367149 CGTGATTAACATACTCATATGCAGCT 59.633 38.462 0.00 0.00 41.83 4.24
138 139 7.411264 CGTGATTAACATACTCATATGCAGCTC 60.411 40.741 0.00 0.00 41.83 4.09
139 140 6.875726 TGATTAACATACTCATATGCAGCTCC 59.124 38.462 0.00 0.00 41.83 4.70
140 141 4.694760 AACATACTCATATGCAGCTCCA 57.305 40.909 0.00 0.00 41.83 3.86
141 142 4.268797 ACATACTCATATGCAGCTCCAG 57.731 45.455 0.00 0.00 41.83 3.86
142 143 3.007723 ACATACTCATATGCAGCTCCAGG 59.992 47.826 0.00 0.00 41.83 4.45
143 144 1.798626 ACTCATATGCAGCTCCAGGA 58.201 50.000 0.00 0.00 0.00 3.86
144 145 2.336891 ACTCATATGCAGCTCCAGGAT 58.663 47.619 0.00 0.00 0.00 3.24
145 146 2.709934 ACTCATATGCAGCTCCAGGATT 59.290 45.455 0.00 0.00 0.00 3.01
146 147 3.906218 ACTCATATGCAGCTCCAGGATTA 59.094 43.478 0.00 0.00 0.00 1.75
147 148 4.252073 CTCATATGCAGCTCCAGGATTAC 58.748 47.826 0.00 0.00 0.00 1.89
148 149 3.906218 TCATATGCAGCTCCAGGATTACT 59.094 43.478 0.00 0.00 0.00 2.24
149 150 4.349048 TCATATGCAGCTCCAGGATTACTT 59.651 41.667 0.00 0.00 0.00 2.24
150 151 2.408271 TGCAGCTCCAGGATTACTTG 57.592 50.000 0.00 0.00 0.00 3.16
151 152 1.065199 TGCAGCTCCAGGATTACTTGG 60.065 52.381 0.00 0.00 43.43 3.61
152 153 1.065126 GCAGCTCCAGGATTACTTGGT 60.065 52.381 0.00 0.00 42.76 3.67
153 154 2.619074 GCAGCTCCAGGATTACTTGGTT 60.619 50.000 0.00 0.00 42.76 3.67
154 155 3.012518 CAGCTCCAGGATTACTTGGTTG 58.987 50.000 0.00 0.00 42.76 3.77
155 156 2.912956 AGCTCCAGGATTACTTGGTTGA 59.087 45.455 0.00 0.00 42.76 3.18
156 157 3.054802 AGCTCCAGGATTACTTGGTTGAG 60.055 47.826 0.00 0.00 42.76 3.02
157 158 3.274288 CTCCAGGATTACTTGGTTGAGC 58.726 50.000 0.00 0.00 42.76 4.26
158 159 2.642311 TCCAGGATTACTTGGTTGAGCA 59.358 45.455 0.00 0.00 42.76 4.26
159 160 2.749621 CCAGGATTACTTGGTTGAGCAC 59.250 50.000 0.00 0.00 38.28 4.40
160 161 2.416547 CAGGATTACTTGGTTGAGCACG 59.583 50.000 0.00 0.00 0.00 5.34
161 162 2.038557 AGGATTACTTGGTTGAGCACGT 59.961 45.455 0.00 0.00 0.00 4.49
162 163 2.159627 GGATTACTTGGTTGAGCACGTG 59.840 50.000 12.28 12.28 0.00 4.49
163 164 2.319136 TTACTTGGTTGAGCACGTGT 57.681 45.000 18.38 3.69 0.00 4.49
164 165 1.577468 TACTTGGTTGAGCACGTGTG 58.423 50.000 18.38 0.00 0.00 3.82
165 166 0.107897 ACTTGGTTGAGCACGTGTGA 60.108 50.000 18.38 0.00 0.00 3.58
166 167 1.013596 CTTGGTTGAGCACGTGTGAA 58.986 50.000 18.38 4.70 0.00 3.18
167 168 0.730265 TTGGTTGAGCACGTGTGAAC 59.270 50.000 18.38 15.94 0.00 3.18
168 169 0.107897 TGGTTGAGCACGTGTGAACT 60.108 50.000 18.38 5.15 0.00 3.01
169 170 1.014352 GGTTGAGCACGTGTGAACTT 58.986 50.000 18.38 0.00 0.00 2.66
170 171 2.206750 GGTTGAGCACGTGTGAACTTA 58.793 47.619 18.38 0.00 0.00 2.24
171 172 2.033151 GGTTGAGCACGTGTGAACTTAC 60.033 50.000 18.38 7.74 0.00 2.34
172 173 2.588027 TGAGCACGTGTGAACTTACA 57.412 45.000 18.38 3.61 0.00 2.41
173 174 3.106242 TGAGCACGTGTGAACTTACAT 57.894 42.857 18.38 0.00 32.43 2.29
174 175 3.462982 TGAGCACGTGTGAACTTACATT 58.537 40.909 18.38 0.00 32.43 2.71
175 176 3.247411 TGAGCACGTGTGAACTTACATTG 59.753 43.478 18.38 0.00 32.43 2.82
176 177 3.462982 AGCACGTGTGAACTTACATTGA 58.537 40.909 18.38 0.00 32.43 2.57
177 178 3.494626 AGCACGTGTGAACTTACATTGAG 59.505 43.478 18.38 0.00 32.43 3.02
178 179 3.247648 GCACGTGTGAACTTACATTGAGT 59.752 43.478 18.38 0.00 32.43 3.41
179 180 4.446385 GCACGTGTGAACTTACATTGAGTA 59.554 41.667 18.38 0.00 32.43 2.59
180 181 5.388475 GCACGTGTGAACTTACATTGAGTAG 60.388 44.000 18.38 0.00 33.43 2.57
181 182 5.918576 CACGTGTGAACTTACATTGAGTAGA 59.081 40.000 7.58 0.00 33.43 2.59
182 183 6.586463 CACGTGTGAACTTACATTGAGTAGAT 59.414 38.462 7.58 0.00 33.43 1.98
183 184 6.807230 ACGTGTGAACTTACATTGAGTAGATC 59.193 38.462 0.00 0.00 33.43 2.75
184 185 7.030165 CGTGTGAACTTACATTGAGTAGATCT 58.970 38.462 0.00 0.00 33.43 2.75
185 186 8.182227 CGTGTGAACTTACATTGAGTAGATCTA 58.818 37.037 0.00 0.00 33.43 1.98
225 226 9.909644 TTTTCATGCAAATAAATTTTGATTGGG 57.090 25.926 0.00 0.00 0.00 4.12
226 227 8.632906 TTCATGCAAATAAATTTTGATTGGGT 57.367 26.923 0.00 0.00 0.00 4.51
227 228 8.632906 TCATGCAAATAAATTTTGATTGGGTT 57.367 26.923 0.00 0.00 0.00 4.11
228 229 8.512956 TCATGCAAATAAATTTTGATTGGGTTG 58.487 29.630 0.00 0.00 0.00 3.77
229 230 7.814264 TGCAAATAAATTTTGATTGGGTTGT 57.186 28.000 0.00 0.00 0.00 3.32
230 231 8.908786 TGCAAATAAATTTTGATTGGGTTGTA 57.091 26.923 0.00 0.00 0.00 2.41
231 232 9.342308 TGCAAATAAATTTTGATTGGGTTGTAA 57.658 25.926 0.00 0.00 0.00 2.41
232 233 9.824534 GCAAATAAATTTTGATTGGGTTGTAAG 57.175 29.630 0.00 0.00 0.00 2.34
243 244 9.613428 TTGATTGGGTTGTAAGACTATTAGATG 57.387 33.333 0.00 0.00 0.00 2.90
244 245 8.768397 TGATTGGGTTGTAAGACTATTAGATGT 58.232 33.333 0.00 0.00 0.00 3.06
245 246 9.614792 GATTGGGTTGTAAGACTATTAGATGTT 57.385 33.333 0.00 0.00 0.00 2.71
246 247 8.786826 TTGGGTTGTAAGACTATTAGATGTTG 57.213 34.615 0.00 0.00 0.00 3.33
247 248 7.913789 TGGGTTGTAAGACTATTAGATGTTGT 58.086 34.615 0.00 0.00 0.00 3.32
248 249 8.380099 TGGGTTGTAAGACTATTAGATGTTGTT 58.620 33.333 0.00 0.00 0.00 2.83
249 250 9.227777 GGGTTGTAAGACTATTAGATGTTGTTT 57.772 33.333 0.00 0.00 0.00 2.83
275 276 9.491675 TTTATTTTCATTAGGTTGTACGTCAGA 57.508 29.630 0.00 0.00 0.00 3.27
276 277 9.661563 TTATTTTCATTAGGTTGTACGTCAGAT 57.338 29.630 0.00 0.00 0.00 2.90
278 279 9.832445 ATTTTCATTAGGTTGTACGTCAGATAT 57.168 29.630 0.00 0.00 0.00 1.63
279 280 8.642908 TTTCATTAGGTTGTACGTCAGATATG 57.357 34.615 0.00 0.00 0.00 1.78
280 281 7.576861 TCATTAGGTTGTACGTCAGATATGA 57.423 36.000 0.00 0.00 0.00 2.15
281 282 8.002984 TCATTAGGTTGTACGTCAGATATGAA 57.997 34.615 0.00 0.00 0.00 2.57
282 283 8.471609 TCATTAGGTTGTACGTCAGATATGAAA 58.528 33.333 0.00 0.00 0.00 2.69
283 284 8.540492 CATTAGGTTGTACGTCAGATATGAAAC 58.460 37.037 0.00 0.00 0.00 2.78
284 285 6.282199 AGGTTGTACGTCAGATATGAAACT 57.718 37.500 0.00 0.00 0.00 2.66
285 286 7.400599 AGGTTGTACGTCAGATATGAAACTA 57.599 36.000 0.00 0.00 0.00 2.24
286 287 8.008513 AGGTTGTACGTCAGATATGAAACTAT 57.991 34.615 0.00 0.00 0.00 2.12
287 288 8.475639 AGGTTGTACGTCAGATATGAAACTATT 58.524 33.333 0.00 0.00 0.00 1.73
288 289 9.095065 GGTTGTACGTCAGATATGAAACTATTT 57.905 33.333 0.00 0.00 0.00 1.40
289 290 9.901724 GTTGTACGTCAGATATGAAACTATTTG 57.098 33.333 0.00 0.00 0.00 2.32
290 291 8.126871 TGTACGTCAGATATGAAACTATTTGC 57.873 34.615 0.00 0.00 0.00 3.68
291 292 7.979537 TGTACGTCAGATATGAAACTATTTGCT 59.020 33.333 0.00 0.00 0.00 3.91
292 293 9.459640 GTACGTCAGATATGAAACTATTTGCTA 57.540 33.333 0.00 0.00 0.00 3.49
294 295 8.982685 ACGTCAGATATGAAACTATTTGCTATG 58.017 33.333 0.00 0.00 0.00 2.23
295 296 7.954248 CGTCAGATATGAAACTATTTGCTATGC 59.046 37.037 0.00 0.00 0.00 3.14
296 297 8.997323 GTCAGATATGAAACTATTTGCTATGCT 58.003 33.333 0.00 0.00 0.00 3.79
297 298 9.565090 TCAGATATGAAACTATTTGCTATGCTT 57.435 29.630 0.00 0.00 0.00 3.91
298 299 9.608617 CAGATATGAAACTATTTGCTATGCTTG 57.391 33.333 0.00 0.00 0.00 4.01
299 300 9.565090 AGATATGAAACTATTTGCTATGCTTGA 57.435 29.630 0.00 0.00 0.00 3.02
303 304 9.880157 ATGAAACTATTTGCTATGCTTGATTTT 57.120 25.926 0.00 0.00 0.00 1.82
318 319 9.883142 ATGCTTGATTTTAGTATAGATAGCCTC 57.117 33.333 0.00 0.00 0.00 4.70
319 320 8.314751 TGCTTGATTTTAGTATAGATAGCCTCC 58.685 37.037 0.00 0.00 0.00 4.30
320 321 7.489757 GCTTGATTTTAGTATAGATAGCCTCCG 59.510 40.741 0.00 0.00 0.00 4.63
321 322 7.406031 TGATTTTAGTATAGATAGCCTCCGG 57.594 40.000 0.00 0.00 0.00 5.14
331 332 4.241555 GCCTCCGGCGGATGTGAT 62.242 66.667 31.23 0.00 39.62 3.06
332 333 2.280389 CCTCCGGCGGATGTGATG 60.280 66.667 31.23 16.45 0.00 3.07
333 334 2.969238 CTCCGGCGGATGTGATGC 60.969 66.667 31.23 0.00 0.00 3.91
334 335 3.738429 CTCCGGCGGATGTGATGCA 62.738 63.158 31.23 3.10 0.00 3.96
335 336 3.274586 CCGGCGGATGTGATGCAG 61.275 66.667 24.41 0.00 0.00 4.41
336 337 3.945434 CGGCGGATGTGATGCAGC 61.945 66.667 0.00 0.00 0.00 5.25
340 341 3.945434 GGATGTGATGCAGCCGCG 61.945 66.667 0.00 0.00 44.39 6.46
341 342 3.197790 GATGTGATGCAGCCGCGT 61.198 61.111 4.92 0.00 42.97 6.01
347 348 4.393155 ATGCAGCCGCGTCTTGGA 62.393 61.111 4.92 1.45 42.97 3.53
350 351 3.414700 CAGCCGCGTCTTGGACAC 61.415 66.667 4.92 0.00 32.09 3.67
351 352 3.923864 AGCCGCGTCTTGGACACA 61.924 61.111 4.92 0.00 32.09 3.72
352 353 3.712881 GCCGCGTCTTGGACACAC 61.713 66.667 4.92 0.00 32.09 3.82
353 354 2.279851 CCGCGTCTTGGACACACA 60.280 61.111 4.92 0.00 32.09 3.72
354 355 2.310233 CCGCGTCTTGGACACACAG 61.310 63.158 4.92 0.00 32.09 3.66
355 356 2.939022 GCGTCTTGGACACACAGC 59.061 61.111 0.00 0.00 32.09 4.40
356 357 2.607892 GCGTCTTGGACACACAGCC 61.608 63.158 0.00 0.00 32.09 4.85
357 358 1.069765 CGTCTTGGACACACAGCCT 59.930 57.895 0.00 0.00 32.09 4.58
358 359 0.946221 CGTCTTGGACACACAGCCTC 60.946 60.000 0.00 0.00 32.09 4.70
359 360 0.106708 GTCTTGGACACACAGCCTCA 59.893 55.000 0.00 0.00 32.09 3.86
360 361 0.106708 TCTTGGACACACAGCCTCAC 59.893 55.000 0.00 0.00 0.00 3.51
361 362 0.179048 CTTGGACACACAGCCTCACA 60.179 55.000 0.00 0.00 0.00 3.58
362 363 0.473755 TTGGACACACAGCCTCACAT 59.526 50.000 0.00 0.00 0.00 3.21
363 364 1.347062 TGGACACACAGCCTCACATA 58.653 50.000 0.00 0.00 0.00 2.29
364 365 1.001974 TGGACACACAGCCTCACATAC 59.998 52.381 0.00 0.00 0.00 2.39
365 366 1.001974 GGACACACAGCCTCACATACA 59.998 52.381 0.00 0.00 0.00 2.29
366 367 2.069273 GACACACAGCCTCACATACAC 58.931 52.381 0.00 0.00 0.00 2.90
367 368 1.416030 ACACACAGCCTCACATACACA 59.584 47.619 0.00 0.00 0.00 3.72
368 369 2.158827 ACACACAGCCTCACATACACAA 60.159 45.455 0.00 0.00 0.00 3.33
369 370 2.877786 CACACAGCCTCACATACACAAA 59.122 45.455 0.00 0.00 0.00 2.83
370 371 3.503363 CACACAGCCTCACATACACAAAT 59.497 43.478 0.00 0.00 0.00 2.32
371 372 3.753272 ACACAGCCTCACATACACAAATC 59.247 43.478 0.00 0.00 0.00 2.17
372 373 3.127548 CACAGCCTCACATACACAAATCC 59.872 47.826 0.00 0.00 0.00 3.01
373 374 2.352651 CAGCCTCACATACACAAATCCG 59.647 50.000 0.00 0.00 0.00 4.18
374 375 1.670811 GCCTCACATACACAAATCCGG 59.329 52.381 0.00 0.00 0.00 5.14
375 376 2.679639 GCCTCACATACACAAATCCGGA 60.680 50.000 6.61 6.61 0.00 5.14
376 377 2.936498 CCTCACATACACAAATCCGGAC 59.064 50.000 6.12 0.00 0.00 4.79
377 378 2.603110 CTCACATACACAAATCCGGACG 59.397 50.000 6.12 0.00 0.00 4.79
378 379 1.663643 CACATACACAAATCCGGACGG 59.336 52.381 6.12 3.96 0.00 4.79
387 388 3.371063 TCCGGACGGACACTGCTC 61.371 66.667 9.76 0.00 39.76 4.26
388 389 3.374402 CCGGACGGACACTGCTCT 61.374 66.667 4.40 0.00 37.50 4.09
389 390 2.044555 CCGGACGGACACTGCTCTA 61.045 63.158 4.40 0.00 37.50 2.43
390 391 1.384989 CCGGACGGACACTGCTCTAT 61.385 60.000 4.40 0.00 37.50 1.98
391 392 0.456221 CGGACGGACACTGCTCTATT 59.544 55.000 0.00 0.00 0.00 1.73
392 393 1.799181 CGGACGGACACTGCTCTATTG 60.799 57.143 0.00 0.00 0.00 1.90
393 394 1.281899 GACGGACACTGCTCTATTGC 58.718 55.000 0.00 0.00 0.00 3.56
394 395 0.108138 ACGGACACTGCTCTATTGCC 60.108 55.000 0.00 0.00 0.00 4.52
395 396 0.108186 CGGACACTGCTCTATTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
396 397 1.473965 CGGACACTGCTCTATTGCCAT 60.474 52.381 0.00 0.00 0.00 4.40
397 398 2.216898 GGACACTGCTCTATTGCCATC 58.783 52.381 0.00 0.00 0.00 3.51
398 399 2.216898 GACACTGCTCTATTGCCATCC 58.783 52.381 0.00 0.00 0.00 3.51
399 400 1.133976 ACACTGCTCTATTGCCATCCC 60.134 52.381 0.00 0.00 0.00 3.85
400 401 1.134007 CACTGCTCTATTGCCATCCCA 60.134 52.381 0.00 0.00 0.00 4.37
401 402 1.565759 ACTGCTCTATTGCCATCCCAA 59.434 47.619 0.00 0.00 0.00 4.12
402 403 2.025037 ACTGCTCTATTGCCATCCCAAA 60.025 45.455 0.00 0.00 0.00 3.28
403 404 2.360165 CTGCTCTATTGCCATCCCAAAC 59.640 50.000 0.00 0.00 0.00 2.93
404 405 1.334869 GCTCTATTGCCATCCCAAACG 59.665 52.381 0.00 0.00 0.00 3.60
405 406 2.917933 CTCTATTGCCATCCCAAACGA 58.082 47.619 0.00 0.00 0.00 3.85
406 407 3.278574 CTCTATTGCCATCCCAAACGAA 58.721 45.455 0.00 0.00 0.00 3.85
407 408 3.013921 TCTATTGCCATCCCAAACGAAC 58.986 45.455 0.00 0.00 0.00 3.95
408 409 1.626686 ATTGCCATCCCAAACGAACA 58.373 45.000 0.00 0.00 0.00 3.18
409 410 1.403814 TTGCCATCCCAAACGAACAA 58.596 45.000 0.00 0.00 0.00 2.83
410 411 1.403814 TGCCATCCCAAACGAACAAA 58.596 45.000 0.00 0.00 0.00 2.83
411 412 1.967066 TGCCATCCCAAACGAACAAAT 59.033 42.857 0.00 0.00 0.00 2.32
412 413 2.029470 TGCCATCCCAAACGAACAAATC 60.029 45.455 0.00 0.00 0.00 2.17
413 414 2.673893 GCCATCCCAAACGAACAAATCC 60.674 50.000 0.00 0.00 0.00 3.01
414 415 2.415357 CCATCCCAAACGAACAAATCCG 60.415 50.000 0.00 0.00 0.00 4.18
415 416 2.257691 TCCCAAACGAACAAATCCGA 57.742 45.000 0.00 0.00 0.00 4.55
416 417 2.573369 TCCCAAACGAACAAATCCGAA 58.427 42.857 0.00 0.00 0.00 4.30
417 418 2.291190 TCCCAAACGAACAAATCCGAAC 59.709 45.455 0.00 0.00 0.00 3.95
418 419 2.033550 CCCAAACGAACAAATCCGAACA 59.966 45.455 0.00 0.00 0.00 3.18
419 420 3.489398 CCCAAACGAACAAATCCGAACAA 60.489 43.478 0.00 0.00 0.00 2.83
420 421 4.295051 CCAAACGAACAAATCCGAACAAT 58.705 39.130 0.00 0.00 0.00 2.71
421 422 5.453648 CCAAACGAACAAATCCGAACAATA 58.546 37.500 0.00 0.00 0.00 1.90
422 423 6.090129 CCAAACGAACAAATCCGAACAATAT 58.910 36.000 0.00 0.00 0.00 1.28
423 424 6.250527 CCAAACGAACAAATCCGAACAATATC 59.749 38.462 0.00 0.00 0.00 1.63
424 425 6.489127 AACGAACAAATCCGAACAATATCA 57.511 33.333 0.00 0.00 0.00 2.15
425 426 6.106877 ACGAACAAATCCGAACAATATCAG 57.893 37.500 0.00 0.00 0.00 2.90
432 433 6.422776 AATCCGAACAATATCAGTGTGTTC 57.577 37.500 12.18 12.18 44.93 3.18
438 439 4.655963 ACAATATCAGTGTGTTCAGCCTT 58.344 39.130 0.00 0.00 0.00 4.35
439 440 4.697352 ACAATATCAGTGTGTTCAGCCTTC 59.303 41.667 0.00 0.00 0.00 3.46
543 544 2.350522 GCTGACACCGTCAATGATTCT 58.649 47.619 0.00 0.00 42.26 2.40
580 581 3.260884 GGCGTTCCTGGATTATCCTATGA 59.739 47.826 12.91 3.61 37.46 2.15
624 625 2.912986 CTTGACCGCAAGTGCTACA 58.087 52.632 1.21 0.00 45.10 2.74
655 656 4.485834 CATGGCAATGCGCTGCGT 62.486 61.111 24.04 0.82 43.60 5.24
698 699 2.325666 GACCTCTCTCGCGGTAGCAC 62.326 65.000 6.13 0.00 45.49 4.40
736 738 2.280628 CTCGAGGCCAGTCAAATAACC 58.719 52.381 5.01 0.00 0.00 2.85
778 781 2.851764 GCTTTTTCACGTGTTACCACCG 60.852 50.000 16.51 0.00 38.41 4.94
783 786 1.153409 ACGTGTTACCACCGTTGCA 60.153 52.632 0.00 0.00 38.41 4.08
798 801 4.202010 ACCGTTGCATTTGTCCATATAAGC 60.202 41.667 0.00 0.00 0.00 3.09
801 804 5.523369 GTTGCATTTGTCCATATAAGCCTC 58.477 41.667 0.00 0.00 0.00 4.70
802 805 3.814842 TGCATTTGTCCATATAAGCCTCG 59.185 43.478 0.00 0.00 0.00 4.63
814 821 2.663826 AAGCCTCGAACACATCTCTC 57.336 50.000 0.00 0.00 0.00 3.20
818 825 2.095461 CCTCGAACACATCTCTCCTCA 58.905 52.381 0.00 0.00 0.00 3.86
823 830 2.612285 ACACATCTCTCCTCACCTCA 57.388 50.000 0.00 0.00 0.00 3.86
853 860 2.692557 ACTGGTGATCTGATCTTCTCCG 59.307 50.000 17.82 12.37 0.00 4.63
875 882 3.624326 CTCTTGATACGGAGAGCTCTG 57.376 52.381 23.91 10.55 41.63 3.35
876 883 1.678627 TCTTGATACGGAGAGCTCTGC 59.321 52.381 23.91 24.08 39.55 4.26
911 931 3.003173 AGGTGCGCCTGCCTAAGA 61.003 61.111 20.48 0.00 45.05 2.10
933 953 5.546499 AGATTTGTCCTACTTACAGTTCCCA 59.454 40.000 0.00 0.00 0.00 4.37
959 979 4.699925 TCCTTACACTTTGCACTAACCT 57.300 40.909 0.00 0.00 0.00 3.50
971 991 2.931320 GCACTAACCTTCCTCTGTTCGG 60.931 54.545 0.00 0.00 0.00 4.30
975 995 2.305858 ACCTTCCTCTGTTCGGTAGT 57.694 50.000 0.00 0.00 0.00 2.73
976 996 3.446442 ACCTTCCTCTGTTCGGTAGTA 57.554 47.619 0.00 0.00 0.00 1.82
977 997 3.087781 ACCTTCCTCTGTTCGGTAGTAC 58.912 50.000 0.00 0.00 0.00 2.73
1020 1040 8.461249 AATTTATGATTCTTGACTGGGAGATG 57.539 34.615 0.00 0.00 0.00 2.90
1051 1077 4.785453 GGCCTCTTGGACTGGGCG 62.785 72.222 0.00 0.00 44.91 6.13
1146 1172 2.202453 GTCTCGTCCGTCGCTTCC 60.202 66.667 0.00 0.00 39.67 3.46
1176 1202 2.159310 GGACACAGAGGTCAGAATCGAG 60.159 54.545 0.00 0.00 39.59 4.04
1184 1210 1.066858 GGTCAGAATCGAGCAACTCCA 60.067 52.381 0.00 0.00 33.55 3.86
1185 1211 2.612972 GGTCAGAATCGAGCAACTCCAA 60.613 50.000 0.00 0.00 33.55 3.53
1188 1214 3.070018 CAGAATCGAGCAACTCCAACTT 58.930 45.455 0.00 0.00 0.00 2.66
1189 1215 4.021456 TCAGAATCGAGCAACTCCAACTTA 60.021 41.667 0.00 0.00 0.00 2.24
1190 1216 4.092091 CAGAATCGAGCAACTCCAACTTAC 59.908 45.833 0.00 0.00 0.00 2.34
1191 1217 2.450609 TCGAGCAACTCCAACTTACC 57.549 50.000 0.00 0.00 0.00 2.85
1192 1218 1.689813 TCGAGCAACTCCAACTTACCA 59.310 47.619 0.00 0.00 0.00 3.25
1195 1221 3.305813 CGAGCAACTCCAACTTACCACTA 60.306 47.826 0.00 0.00 0.00 2.74
1196 1222 3.995048 GAGCAACTCCAACTTACCACTAC 59.005 47.826 0.00 0.00 0.00 2.73
1204 1230 3.440173 CCAACTTACCACTACCTGCAATG 59.560 47.826 0.00 0.00 0.00 2.82
1205 1231 2.711542 ACTTACCACTACCTGCAATGC 58.288 47.619 0.00 0.00 0.00 3.56
1212 1238 2.095567 CACTACCTGCAATGCAACAGTC 60.096 50.000 9.92 0.00 38.41 3.51
1223 1249 1.055338 GCAACAGTCGCATTTCAAGC 58.945 50.000 0.00 0.00 0.00 4.01
1228 1254 0.890542 AGTCGCATTTCAAGCCAGCA 60.891 50.000 0.00 0.00 0.00 4.41
1230 1256 0.890542 TCGCATTTCAAGCCAGCAGT 60.891 50.000 0.00 0.00 0.00 4.40
1231 1257 0.038892 CGCATTTCAAGCCAGCAGTT 60.039 50.000 0.00 0.00 0.00 3.16
1232 1258 1.425412 GCATTTCAAGCCAGCAGTTG 58.575 50.000 0.00 0.00 0.00 3.16
1457 1483 2.526873 AGCCACCTGGAGAACGGT 60.527 61.111 0.00 0.00 37.39 4.83
1583 1609 1.555075 ACCTGTATCCACGATGCAACT 59.445 47.619 0.00 0.00 34.57 3.16
1645 1673 2.895404 AGGATTTGCATGTTGTTGCTCT 59.105 40.909 0.00 0.00 43.18 4.09
1671 1699 6.478512 TTTTTAGGGACATGTTGCTCTTTT 57.521 33.333 0.00 0.00 0.00 2.27
1672 1700 6.478512 TTTTAGGGACATGTTGCTCTTTTT 57.521 33.333 0.00 0.00 0.00 1.94
1673 1701 5.452078 TTAGGGACATGTTGCTCTTTTTG 57.548 39.130 0.00 0.00 0.00 2.44
1674 1702 3.565307 AGGGACATGTTGCTCTTTTTGA 58.435 40.909 0.00 0.00 0.00 2.69
1675 1703 3.960102 AGGGACATGTTGCTCTTTTTGAA 59.040 39.130 0.00 0.00 0.00 2.69
1676 1704 4.590222 AGGGACATGTTGCTCTTTTTGAAT 59.410 37.500 0.00 0.00 0.00 2.57
1677 1705 5.070847 AGGGACATGTTGCTCTTTTTGAATT 59.929 36.000 0.00 0.00 0.00 2.17
1678 1706 6.267471 AGGGACATGTTGCTCTTTTTGAATTA 59.733 34.615 0.00 0.00 0.00 1.40
1679 1707 6.587608 GGGACATGTTGCTCTTTTTGAATTAG 59.412 38.462 0.00 0.00 0.00 1.73
1680 1708 6.089954 GGACATGTTGCTCTTTTTGAATTAGC 59.910 38.462 0.00 0.00 0.00 3.09
1681 1709 5.630680 ACATGTTGCTCTTTTTGAATTAGCG 59.369 36.000 0.00 0.00 35.95 4.26
1682 1710 5.181690 TGTTGCTCTTTTTGAATTAGCGT 57.818 34.783 0.00 0.00 35.95 5.07
1683 1711 4.975502 TGTTGCTCTTTTTGAATTAGCGTG 59.024 37.500 0.00 0.00 35.95 5.34
1684 1712 5.212194 GTTGCTCTTTTTGAATTAGCGTGA 58.788 37.500 0.00 0.00 35.95 4.35
1685 1713 5.034554 TGCTCTTTTTGAATTAGCGTGAG 57.965 39.130 0.00 0.00 35.95 3.51
1715 1743 5.508200 AAAATTGGCACTAAGTTTGTCGA 57.492 34.783 0.00 0.00 0.00 4.20
1716 1744 4.483476 AATTGGCACTAAGTTTGTCGAC 57.517 40.909 9.11 9.11 0.00 4.20
1717 1745 2.902705 TGGCACTAAGTTTGTCGACT 57.097 45.000 17.92 0.00 0.00 4.18
1718 1746 3.188159 TGGCACTAAGTTTGTCGACTT 57.812 42.857 17.92 5.02 42.27 3.01
1719 1747 3.537580 TGGCACTAAGTTTGTCGACTTT 58.462 40.909 17.92 8.50 40.24 2.66
1720 1748 3.942748 TGGCACTAAGTTTGTCGACTTTT 59.057 39.130 17.92 8.17 40.24 2.27
1721 1749 4.034742 TGGCACTAAGTTTGTCGACTTTTC 59.965 41.667 17.92 4.94 40.24 2.29
1722 1750 4.034742 GGCACTAAGTTTGTCGACTTTTCA 59.965 41.667 17.92 0.00 40.24 2.69
1723 1751 5.277828 GGCACTAAGTTTGTCGACTTTTCAT 60.278 40.000 17.92 1.55 40.24 2.57
1724 1752 6.199393 GCACTAAGTTTGTCGACTTTTCATT 58.801 36.000 17.92 6.80 40.24 2.57
1725 1753 6.691388 GCACTAAGTTTGTCGACTTTTCATTT 59.309 34.615 17.92 5.01 40.24 2.32
1726 1754 7.220108 GCACTAAGTTTGTCGACTTTTCATTTT 59.780 33.333 17.92 3.52 40.24 1.82
1727 1755 9.072294 CACTAAGTTTGTCGACTTTTCATTTTT 57.928 29.630 17.92 2.15 40.24 1.94
1755 1783 7.835634 TTGAACAACAACAGTTATTTTTCCC 57.164 32.000 1.62 0.00 33.18 3.97
1756 1784 6.342111 TGAACAACAACAGTTATTTTTCCCC 58.658 36.000 1.62 0.00 0.00 4.81
1757 1785 4.939271 ACAACAACAGTTATTTTTCCCCG 58.061 39.130 0.00 0.00 0.00 5.73
1758 1786 3.653539 ACAACAGTTATTTTTCCCCGC 57.346 42.857 0.00 0.00 0.00 6.13
1759 1787 2.959707 ACAACAGTTATTTTTCCCCGCA 59.040 40.909 0.00 0.00 0.00 5.69
1760 1788 3.385111 ACAACAGTTATTTTTCCCCGCAA 59.615 39.130 0.00 0.00 0.00 4.85
1761 1789 4.141914 ACAACAGTTATTTTTCCCCGCAAA 60.142 37.500 0.00 0.00 0.00 3.68
1762 1790 4.674281 ACAGTTATTTTTCCCCGCAAAA 57.326 36.364 0.00 0.00 0.00 2.44
1810 1838 8.099364 ACAACATTTTACAGAGAATAGTGTGG 57.901 34.615 0.00 0.00 0.00 4.17
1866 1900 5.008613 GCAGTACAAGGTCATGTTTCTGAAA 59.991 40.000 0.00 0.00 36.79 2.69
1873 1907 4.752101 AGGTCATGTTTCTGAAAAGAGACG 59.248 41.667 4.09 0.00 0.00 4.18
1874 1908 4.458708 GTCATGTTTCTGAAAAGAGACGC 58.541 43.478 4.09 0.00 0.00 5.19
1881 1916 0.677288 TGAAAAGAGACGCCGGAGAA 59.323 50.000 13.83 0.00 0.00 2.87
1899 1935 6.710744 CCGGAGAACTACATGCCTATTTTTAT 59.289 38.462 0.00 0.00 0.00 1.40
1954 2016 5.752892 TTAACATTAAAACACCTGTGCGA 57.247 34.783 0.00 0.00 0.00 5.10
1956 2018 3.959943 ACATTAAAACACCTGTGCGAAC 58.040 40.909 0.00 0.00 0.00 3.95
1965 2027 2.290367 CACCTGTGCGAACAAAAGATGA 59.710 45.455 0.00 0.00 0.00 2.92
1967 2029 2.290367 CCTGTGCGAACAAAAGATGACA 59.710 45.455 0.00 0.00 0.00 3.58
1973 2036 3.617669 CGAACAAAAGATGACAACGCTT 58.382 40.909 0.00 0.00 0.00 4.68
2009 2072 1.369625 GGCCTTATGTTCCAGTGACG 58.630 55.000 0.00 0.00 0.00 4.35
2013 2076 3.615592 GCCTTATGTTCCAGTGACGTGTA 60.616 47.826 0.00 0.00 0.00 2.90
2029 2094 7.606456 AGTGACGTGTATTTGAATATGGAACTT 59.394 33.333 0.00 0.00 0.00 2.66
2032 2099 8.106247 ACGTGTATTTGAATATGGAACTTGTT 57.894 30.769 0.00 0.00 0.00 2.83
2062 2129 4.406069 CTGATGCAAGTACCAAACAATCG 58.594 43.478 0.00 0.00 0.00 3.34
2079 2146 4.202284 ACAATCGGTGTAGTACTGTGGTTT 60.202 41.667 5.39 0.00 39.29 3.27
2089 2156 0.250727 ACTGTGGTTTCGGGATGTGG 60.251 55.000 0.00 0.00 0.00 4.17
2121 2188 4.199310 GCTATCATTGTGGCCAAGAGTAA 58.801 43.478 7.24 0.00 33.17 2.24
2163 2230 1.972660 GAAGATGACACCGGGGGAGG 61.973 65.000 9.50 0.00 37.30 4.30
2234 2509 4.202357 GGATGATCACACCAATACCTGCTA 60.202 45.833 13.77 0.00 0.00 3.49
2249 2524 4.446371 ACCTGCTAGAGAATGTTGCATAC 58.554 43.478 0.00 0.00 33.02 2.39
2323 2606 1.407258 GCTGGTGCTTGTGTGGTTAAA 59.593 47.619 0.00 0.00 36.03 1.52
2371 2654 4.406456 AGTGTTGATTTTGTCCTGCCATA 58.594 39.130 0.00 0.00 0.00 2.74
2431 2783 2.624838 AGGCACCACAAGAAAGTGAATG 59.375 45.455 0.00 0.00 42.05 2.67
2511 2863 4.402155 GGAATGGAATGGTTATGTTCAGCA 59.598 41.667 0.00 0.00 0.00 4.41
2537 2889 9.959721 AAAAGCTTCTGTTCTAATATACCAAGA 57.040 29.630 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.153655 TGGTCGTAGATACTATCATCACGC 59.846 45.833 10.64 7.62 40.67 5.34
1 2 5.857822 TGGTCGTAGATACTATCATCACG 57.142 43.478 9.76 9.76 40.67 4.35
2 3 6.430308 TCCTTGGTCGTAGATACTATCATCAC 59.570 42.308 0.00 0.00 40.67 3.06
3 4 6.540083 TCCTTGGTCGTAGATACTATCATCA 58.460 40.000 0.00 0.00 40.67 3.07
4 5 7.633193 ATCCTTGGTCGTAGATACTATCATC 57.367 40.000 0.00 0.00 40.67 2.92
5 6 8.307483 CAAATCCTTGGTCGTAGATACTATCAT 58.693 37.037 0.00 0.00 40.67 2.45
6 7 7.504574 TCAAATCCTTGGTCGTAGATACTATCA 59.495 37.037 0.00 0.00 40.67 2.15
7 8 7.883217 TCAAATCCTTGGTCGTAGATACTATC 58.117 38.462 0.00 0.00 40.67 2.08
8 9 7.834881 TCAAATCCTTGGTCGTAGATACTAT 57.165 36.000 0.00 0.00 40.67 2.12
9 10 7.834881 ATCAAATCCTTGGTCGTAGATACTA 57.165 36.000 0.00 0.00 40.67 1.82
10 11 6.732896 ATCAAATCCTTGGTCGTAGATACT 57.267 37.500 0.00 0.00 40.67 2.12
11 12 7.787725 AAATCAAATCCTTGGTCGTAGATAC 57.212 36.000 0.00 0.00 40.67 2.24
12 13 8.044309 TGAAAATCAAATCCTTGGTCGTAGATA 58.956 33.333 0.00 0.00 40.67 1.98
13 14 6.884295 TGAAAATCAAATCCTTGGTCGTAGAT 59.116 34.615 0.00 0.00 40.67 1.98
14 15 6.234920 TGAAAATCAAATCCTTGGTCGTAGA 58.765 36.000 0.00 0.00 33.01 2.59
15 16 6.403636 CCTGAAAATCAAATCCTTGGTCGTAG 60.404 42.308 0.00 0.00 33.01 3.51
16 17 5.414454 CCTGAAAATCAAATCCTTGGTCGTA 59.586 40.000 0.00 0.00 33.01 3.43
17 18 4.218417 CCTGAAAATCAAATCCTTGGTCGT 59.782 41.667 0.00 0.00 33.01 4.34
18 19 4.380867 CCCTGAAAATCAAATCCTTGGTCG 60.381 45.833 0.00 0.00 33.01 4.79
19 20 4.528206 ACCCTGAAAATCAAATCCTTGGTC 59.472 41.667 0.00 0.00 33.01 4.02
20 21 4.284234 CACCCTGAAAATCAAATCCTTGGT 59.716 41.667 0.00 0.00 33.01 3.67
21 22 4.527816 TCACCCTGAAAATCAAATCCTTGG 59.472 41.667 0.00 0.00 33.01 3.61
22 23 5.726980 TCACCCTGAAAATCAAATCCTTG 57.273 39.130 0.00 0.00 0.00 3.61
23 24 6.745794 TTTCACCCTGAAAATCAAATCCTT 57.254 33.333 0.00 0.00 42.72 3.36
34 35 5.067674 CAGACTCAACATTTTCACCCTGAAA 59.932 40.000 0.00 0.00 43.84 2.69
35 36 4.580167 CAGACTCAACATTTTCACCCTGAA 59.420 41.667 0.00 0.00 34.03 3.02
36 37 4.136796 CAGACTCAACATTTTCACCCTGA 58.863 43.478 0.00 0.00 0.00 3.86
37 38 4.136796 TCAGACTCAACATTTTCACCCTG 58.863 43.478 0.00 0.00 0.00 4.45
38 39 4.392940 CTCAGACTCAACATTTTCACCCT 58.607 43.478 0.00 0.00 0.00 4.34
39 40 3.057946 GCTCAGACTCAACATTTTCACCC 60.058 47.826 0.00 0.00 0.00 4.61
40 41 3.565482 TGCTCAGACTCAACATTTTCACC 59.435 43.478 0.00 0.00 0.00 4.02
41 42 4.531332 GTGCTCAGACTCAACATTTTCAC 58.469 43.478 0.00 0.00 0.00 3.18
42 43 3.565482 GGTGCTCAGACTCAACATTTTCA 59.435 43.478 0.00 0.00 0.00 2.69
43 44 3.057946 GGGTGCTCAGACTCAACATTTTC 60.058 47.826 0.00 0.00 0.00 2.29
44 45 2.887152 GGGTGCTCAGACTCAACATTTT 59.113 45.455 0.00 0.00 0.00 1.82
45 46 2.508526 GGGTGCTCAGACTCAACATTT 58.491 47.619 0.00 0.00 0.00 2.32
46 47 1.609061 CGGGTGCTCAGACTCAACATT 60.609 52.381 0.00 0.00 0.00 2.71
47 48 0.036952 CGGGTGCTCAGACTCAACAT 60.037 55.000 0.00 0.00 0.00 2.71
48 49 1.367471 CGGGTGCTCAGACTCAACA 59.633 57.895 0.00 0.00 0.00 3.33
49 50 2.029844 GCGGGTGCTCAGACTCAAC 61.030 63.158 0.00 0.00 38.39 3.18
50 51 2.343758 GCGGGTGCTCAGACTCAA 59.656 61.111 0.00 0.00 38.39 3.02
51 52 3.695606 GGCGGGTGCTCAGACTCA 61.696 66.667 0.00 0.00 42.25 3.41
52 53 3.363844 GAGGCGGGTGCTCAGACTC 62.364 68.421 1.48 1.48 42.25 3.36
53 54 3.386237 GAGGCGGGTGCTCAGACT 61.386 66.667 0.00 0.00 42.25 3.24
54 55 4.459089 GGAGGCGGGTGCTCAGAC 62.459 72.222 0.00 0.00 42.25 3.51
55 56 4.704103 AGGAGGCGGGTGCTCAGA 62.704 66.667 0.00 0.00 42.25 3.27
56 57 4.463879 CAGGAGGCGGGTGCTCAG 62.464 72.222 0.00 0.00 42.25 3.35
66 67 1.408702 TGTTGAAAGTTTGCAGGAGGC 59.591 47.619 0.00 0.00 45.13 4.70
67 68 2.689983 ACTGTTGAAAGTTTGCAGGAGG 59.310 45.455 12.91 0.00 0.00 4.30
68 69 4.376340 AACTGTTGAAAGTTTGCAGGAG 57.624 40.909 12.91 5.68 37.05 3.69
69 70 4.799564 AAACTGTTGAAAGTTTGCAGGA 57.200 36.364 12.91 0.00 46.16 3.86
76 77 7.206687 TGAAAGTGAACAAACTGTTGAAAGTT 58.793 30.769 0.00 0.00 41.28 2.66
77 78 6.744112 TGAAAGTGAACAAACTGTTGAAAGT 58.256 32.000 0.00 0.00 41.28 2.66
78 79 7.253420 CGATGAAAGTGAACAAACTGTTGAAAG 60.253 37.037 0.00 0.00 41.28 2.62
79 80 6.526325 CGATGAAAGTGAACAAACTGTTGAAA 59.474 34.615 0.00 0.00 41.28 2.69
80 81 6.027131 CGATGAAAGTGAACAAACTGTTGAA 58.973 36.000 0.00 0.00 41.28 2.69
81 82 5.123186 ACGATGAAAGTGAACAAACTGTTGA 59.877 36.000 0.00 0.00 41.28 3.18
82 83 5.227805 CACGATGAAAGTGAACAAACTGTTG 59.772 40.000 0.00 0.00 41.28 3.33
83 84 5.123186 TCACGATGAAAGTGAACAAACTGTT 59.877 36.000 0.00 0.00 44.56 3.16
84 85 4.634004 TCACGATGAAAGTGAACAAACTGT 59.366 37.500 0.00 0.00 44.56 3.55
85 86 5.155509 TCACGATGAAAGTGAACAAACTG 57.844 39.130 0.00 0.00 44.56 3.16
108 109 9.705290 TGCATATGAGTATGTTAATCACGTATT 57.295 29.630 6.97 0.00 39.90 1.89
109 110 9.358872 CTGCATATGAGTATGTTAATCACGTAT 57.641 33.333 6.97 0.00 39.90 3.06
110 111 7.328493 GCTGCATATGAGTATGTTAATCACGTA 59.672 37.037 6.97 0.00 39.90 3.57
111 112 6.146184 GCTGCATATGAGTATGTTAATCACGT 59.854 38.462 6.97 0.00 39.90 4.49
112 113 6.367149 AGCTGCATATGAGTATGTTAATCACG 59.633 38.462 6.97 0.00 39.90 4.35
113 114 7.148507 GGAGCTGCATATGAGTATGTTAATCAC 60.149 40.741 6.97 0.00 39.90 3.06
114 115 6.875726 GGAGCTGCATATGAGTATGTTAATCA 59.124 38.462 6.97 0.00 39.90 2.57
115 116 6.875726 TGGAGCTGCATATGAGTATGTTAATC 59.124 38.462 2.72 0.00 39.90 1.75
116 117 6.772605 TGGAGCTGCATATGAGTATGTTAAT 58.227 36.000 2.72 0.00 39.90 1.40
117 118 6.173427 TGGAGCTGCATATGAGTATGTTAA 57.827 37.500 2.72 0.00 39.90 2.01
118 119 5.279657 CCTGGAGCTGCATATGAGTATGTTA 60.280 44.000 8.91 0.00 39.90 2.41
119 120 4.504514 CCTGGAGCTGCATATGAGTATGTT 60.505 45.833 8.91 0.00 39.90 2.71
120 121 3.007723 CCTGGAGCTGCATATGAGTATGT 59.992 47.826 8.91 0.00 39.90 2.29
121 122 3.260128 TCCTGGAGCTGCATATGAGTATG 59.740 47.826 8.91 0.00 40.56 2.39
122 123 3.514539 TCCTGGAGCTGCATATGAGTAT 58.485 45.455 8.91 0.00 0.00 2.12
123 124 2.962859 TCCTGGAGCTGCATATGAGTA 58.037 47.619 8.91 0.00 0.00 2.59
124 125 1.798626 TCCTGGAGCTGCATATGAGT 58.201 50.000 8.91 0.00 0.00 3.41
125 126 3.420300 AATCCTGGAGCTGCATATGAG 57.580 47.619 8.91 0.00 0.00 2.90
126 127 3.906218 AGTAATCCTGGAGCTGCATATGA 59.094 43.478 8.91 6.54 0.00 2.15
127 128 4.283363 AGTAATCCTGGAGCTGCATATG 57.717 45.455 8.91 0.00 0.00 1.78
128 129 4.506271 CCAAGTAATCCTGGAGCTGCATAT 60.506 45.833 8.91 2.63 0.00 1.78
129 130 3.181451 CCAAGTAATCCTGGAGCTGCATA 60.181 47.826 8.91 0.00 0.00 3.14
130 131 2.422519 CCAAGTAATCCTGGAGCTGCAT 60.423 50.000 8.91 0.00 0.00 3.96
131 132 1.065199 CCAAGTAATCCTGGAGCTGCA 60.065 52.381 7.99 7.99 0.00 4.41
132 133 1.065126 ACCAAGTAATCCTGGAGCTGC 60.065 52.381 1.52 0.00 0.00 5.25
133 134 3.012518 CAACCAAGTAATCCTGGAGCTG 58.987 50.000 1.52 0.00 0.00 4.24
134 135 2.912956 TCAACCAAGTAATCCTGGAGCT 59.087 45.455 1.52 0.00 0.00 4.09
135 136 3.274288 CTCAACCAAGTAATCCTGGAGC 58.726 50.000 1.52 0.00 0.00 4.70
136 137 3.274288 GCTCAACCAAGTAATCCTGGAG 58.726 50.000 1.52 0.00 0.00 3.86
137 138 2.642311 TGCTCAACCAAGTAATCCTGGA 59.358 45.455 0.00 0.00 0.00 3.86
138 139 2.749621 GTGCTCAACCAAGTAATCCTGG 59.250 50.000 0.00 0.00 0.00 4.45
139 140 2.416547 CGTGCTCAACCAAGTAATCCTG 59.583 50.000 0.00 0.00 0.00 3.86
140 141 2.038557 ACGTGCTCAACCAAGTAATCCT 59.961 45.455 0.00 0.00 0.00 3.24
141 142 2.159627 CACGTGCTCAACCAAGTAATCC 59.840 50.000 0.82 0.00 0.00 3.01
142 143 2.806244 ACACGTGCTCAACCAAGTAATC 59.194 45.455 17.22 0.00 0.00 1.75
143 144 2.548057 CACACGTGCTCAACCAAGTAAT 59.452 45.455 17.22 0.00 0.00 1.89
144 145 1.937223 CACACGTGCTCAACCAAGTAA 59.063 47.619 17.22 0.00 0.00 2.24
145 146 1.137282 TCACACGTGCTCAACCAAGTA 59.863 47.619 17.22 0.00 0.00 2.24
146 147 0.107897 TCACACGTGCTCAACCAAGT 60.108 50.000 17.22 0.00 0.00 3.16
147 148 1.013596 TTCACACGTGCTCAACCAAG 58.986 50.000 17.22 0.00 0.00 3.61
148 149 0.730265 GTTCACACGTGCTCAACCAA 59.270 50.000 17.22 0.00 0.00 3.67
149 150 0.107897 AGTTCACACGTGCTCAACCA 60.108 50.000 17.22 0.00 0.00 3.67
150 151 1.014352 AAGTTCACACGTGCTCAACC 58.986 50.000 17.22 0.00 0.00 3.77
151 152 2.605818 TGTAAGTTCACACGTGCTCAAC 59.394 45.455 17.22 15.28 0.00 3.18
152 153 2.894902 TGTAAGTTCACACGTGCTCAA 58.105 42.857 17.22 2.60 0.00 3.02
153 154 2.588027 TGTAAGTTCACACGTGCTCA 57.412 45.000 17.22 0.00 0.00 4.26
154 155 3.493129 TCAATGTAAGTTCACACGTGCTC 59.507 43.478 17.22 3.60 0.00 4.26
155 156 3.462982 TCAATGTAAGTTCACACGTGCT 58.537 40.909 17.22 0.77 0.00 4.40
156 157 3.247648 ACTCAATGTAAGTTCACACGTGC 59.752 43.478 17.22 0.00 0.00 5.34
157 158 5.918576 TCTACTCAATGTAAGTTCACACGTG 59.081 40.000 15.48 15.48 0.00 4.49
158 159 6.080648 TCTACTCAATGTAAGTTCACACGT 57.919 37.500 0.00 0.00 0.00 4.49
159 160 7.030165 AGATCTACTCAATGTAAGTTCACACG 58.970 38.462 0.00 0.00 0.00 4.49
199 200 9.909644 CCCAATCAAAATTTATTTGCATGAAAA 57.090 25.926 0.07 0.07 0.00 2.29
200 201 9.075678 ACCCAATCAAAATTTATTTGCATGAAA 57.924 25.926 0.00 0.00 0.00 2.69
201 202 8.632906 ACCCAATCAAAATTTATTTGCATGAA 57.367 26.923 0.00 0.00 0.00 2.57
202 203 8.512956 CAACCCAATCAAAATTTATTTGCATGA 58.487 29.630 0.00 0.00 0.00 3.07
203 204 8.298140 ACAACCCAATCAAAATTTATTTGCATG 58.702 29.630 0.00 0.00 0.00 4.06
204 205 8.406730 ACAACCCAATCAAAATTTATTTGCAT 57.593 26.923 0.00 0.00 0.00 3.96
205 206 7.814264 ACAACCCAATCAAAATTTATTTGCA 57.186 28.000 0.00 0.00 0.00 4.08
206 207 9.824534 CTTACAACCCAATCAAAATTTATTTGC 57.175 29.630 0.00 0.00 0.00 3.68
217 218 9.613428 CATCTAATAGTCTTACAACCCAATCAA 57.387 33.333 0.00 0.00 0.00 2.57
218 219 8.768397 ACATCTAATAGTCTTACAACCCAATCA 58.232 33.333 0.00 0.00 0.00 2.57
219 220 9.614792 AACATCTAATAGTCTTACAACCCAATC 57.385 33.333 0.00 0.00 0.00 2.67
220 221 9.396022 CAACATCTAATAGTCTTACAACCCAAT 57.604 33.333 0.00 0.00 0.00 3.16
221 222 8.380099 ACAACATCTAATAGTCTTACAACCCAA 58.620 33.333 0.00 0.00 0.00 4.12
222 223 7.913789 ACAACATCTAATAGTCTTACAACCCA 58.086 34.615 0.00 0.00 0.00 4.51
223 224 8.788325 AACAACATCTAATAGTCTTACAACCC 57.212 34.615 0.00 0.00 0.00 4.11
249 250 9.491675 TCTGACGTACAACCTAATGAAAATAAA 57.508 29.630 0.00 0.00 0.00 1.40
250 251 9.661563 ATCTGACGTACAACCTAATGAAAATAA 57.338 29.630 0.00 0.00 0.00 1.40
252 253 9.832445 ATATCTGACGTACAACCTAATGAAAAT 57.168 29.630 0.00 0.00 0.00 1.82
253 254 9.093970 CATATCTGACGTACAACCTAATGAAAA 57.906 33.333 0.00 0.00 0.00 2.29
254 255 8.471609 TCATATCTGACGTACAACCTAATGAAA 58.528 33.333 0.00 0.00 0.00 2.69
255 256 8.002984 TCATATCTGACGTACAACCTAATGAA 57.997 34.615 0.00 0.00 0.00 2.57
256 257 7.576861 TCATATCTGACGTACAACCTAATGA 57.423 36.000 0.00 0.00 0.00 2.57
257 258 8.540492 GTTTCATATCTGACGTACAACCTAATG 58.460 37.037 0.00 0.00 0.00 1.90
258 259 8.475639 AGTTTCATATCTGACGTACAACCTAAT 58.524 33.333 0.00 0.00 0.00 1.73
259 260 7.833786 AGTTTCATATCTGACGTACAACCTAA 58.166 34.615 0.00 0.00 0.00 2.69
260 261 7.400599 AGTTTCATATCTGACGTACAACCTA 57.599 36.000 0.00 0.00 0.00 3.08
261 262 6.282199 AGTTTCATATCTGACGTACAACCT 57.718 37.500 0.00 0.00 0.00 3.50
262 263 8.644318 AATAGTTTCATATCTGACGTACAACC 57.356 34.615 0.00 0.00 0.00 3.77
263 264 9.901724 CAAATAGTTTCATATCTGACGTACAAC 57.098 33.333 0.00 0.00 0.00 3.32
264 265 8.600625 GCAAATAGTTTCATATCTGACGTACAA 58.399 33.333 0.00 0.00 0.00 2.41
265 266 7.979537 AGCAAATAGTTTCATATCTGACGTACA 59.020 33.333 0.00 0.00 0.00 2.90
266 267 8.354011 AGCAAATAGTTTCATATCTGACGTAC 57.646 34.615 0.00 0.00 0.00 3.67
268 269 8.982685 CATAGCAAATAGTTTCATATCTGACGT 58.017 33.333 0.00 0.00 0.00 4.34
269 270 7.954248 GCATAGCAAATAGTTTCATATCTGACG 59.046 37.037 0.00 0.00 0.00 4.35
270 271 8.997323 AGCATAGCAAATAGTTTCATATCTGAC 58.003 33.333 0.00 0.00 0.00 3.51
271 272 9.565090 AAGCATAGCAAATAGTTTCATATCTGA 57.435 29.630 0.00 0.00 0.00 3.27
272 273 9.608617 CAAGCATAGCAAATAGTTTCATATCTG 57.391 33.333 0.00 0.00 0.00 2.90
273 274 9.565090 TCAAGCATAGCAAATAGTTTCATATCT 57.435 29.630 0.00 0.00 0.00 1.98
277 278 9.880157 AAAATCAAGCATAGCAAATAGTTTCAT 57.120 25.926 0.00 0.00 0.00 2.57
292 293 9.883142 GAGGCTATCTATACTAAAATCAAGCAT 57.117 33.333 0.00 0.00 0.00 3.79
293 294 8.314751 GGAGGCTATCTATACTAAAATCAAGCA 58.685 37.037 0.00 0.00 0.00 3.91
294 295 7.489757 CGGAGGCTATCTATACTAAAATCAAGC 59.510 40.741 0.00 0.00 0.00 4.01
295 296 7.976734 CCGGAGGCTATCTATACTAAAATCAAG 59.023 40.741 0.00 0.00 46.14 3.02
296 297 7.837863 CCGGAGGCTATCTATACTAAAATCAA 58.162 38.462 0.00 0.00 46.14 2.57
297 298 7.406031 CCGGAGGCTATCTATACTAAAATCA 57.594 40.000 0.00 0.00 46.14 2.57
316 317 2.969238 GCATCACATCCGCCGGAG 60.969 66.667 13.12 0.00 34.05 4.63
317 318 3.738429 CTGCATCACATCCGCCGGA 62.738 63.158 8.97 8.97 35.55 5.14
318 319 3.274586 CTGCATCACATCCGCCGG 61.275 66.667 0.00 0.00 0.00 6.13
319 320 3.945434 GCTGCATCACATCCGCCG 61.945 66.667 0.00 0.00 0.00 6.46
320 321 3.589881 GGCTGCATCACATCCGCC 61.590 66.667 0.50 0.00 0.00 6.13
323 324 3.945434 CGCGGCTGCATCACATCC 61.945 66.667 19.50 0.00 42.97 3.51
324 325 3.160557 GACGCGGCTGCATCACATC 62.161 63.158 19.50 0.81 42.97 3.06
325 326 3.197790 GACGCGGCTGCATCACAT 61.198 61.111 19.50 0.00 42.97 3.21
326 327 3.881952 AAGACGCGGCTGCATCACA 62.882 57.895 19.28 0.00 42.97 3.58
327 328 3.121030 AAGACGCGGCTGCATCAC 61.121 61.111 19.28 4.33 42.97 3.06
328 329 3.120385 CAAGACGCGGCTGCATCA 61.120 61.111 19.28 0.00 42.97 3.07
329 330 3.869272 CCAAGACGCGGCTGCATC 61.869 66.667 19.28 12.82 42.97 3.91
330 331 4.393155 TCCAAGACGCGGCTGCAT 62.393 61.111 19.28 0.04 42.97 3.96
333 334 3.414700 GTGTCCAAGACGCGGCTG 61.415 66.667 19.28 10.22 34.95 4.85
334 335 3.923864 TGTGTCCAAGACGCGGCT 61.924 61.111 9.84 9.84 44.86 5.52
335 336 3.712881 GTGTGTCCAAGACGCGGC 61.713 66.667 12.47 7.86 44.86 6.53
336 337 2.279851 TGTGTGTCCAAGACGCGG 60.280 61.111 12.47 0.00 44.86 6.46
337 338 2.943345 GCTGTGTGTCCAAGACGCG 61.943 63.158 3.53 3.53 44.86 6.01
338 339 2.607892 GGCTGTGTGTCCAAGACGC 61.608 63.158 1.37 1.37 42.60 5.19
339 340 0.946221 GAGGCTGTGTGTCCAAGACG 60.946 60.000 0.00 0.00 34.95 4.18
340 341 0.106708 TGAGGCTGTGTGTCCAAGAC 59.893 55.000 0.00 0.00 0.00 3.01
341 342 0.106708 GTGAGGCTGTGTGTCCAAGA 59.893 55.000 0.00 0.00 0.00 3.02
342 343 0.179048 TGTGAGGCTGTGTGTCCAAG 60.179 55.000 0.00 0.00 0.00 3.61
343 344 0.473755 ATGTGAGGCTGTGTGTCCAA 59.526 50.000 0.00 0.00 0.00 3.53
344 345 1.001974 GTATGTGAGGCTGTGTGTCCA 59.998 52.381 0.00 0.00 0.00 4.02
345 346 1.001974 TGTATGTGAGGCTGTGTGTCC 59.998 52.381 0.00 0.00 0.00 4.02
346 347 2.069273 GTGTATGTGAGGCTGTGTGTC 58.931 52.381 0.00 0.00 0.00 3.67
347 348 1.416030 TGTGTATGTGAGGCTGTGTGT 59.584 47.619 0.00 0.00 0.00 3.72
348 349 2.168326 TGTGTATGTGAGGCTGTGTG 57.832 50.000 0.00 0.00 0.00 3.82
349 350 2.928801 TTGTGTATGTGAGGCTGTGT 57.071 45.000 0.00 0.00 0.00 3.72
350 351 3.127548 GGATTTGTGTATGTGAGGCTGTG 59.872 47.826 0.00 0.00 0.00 3.66
351 352 3.347216 GGATTTGTGTATGTGAGGCTGT 58.653 45.455 0.00 0.00 0.00 4.40
352 353 2.352651 CGGATTTGTGTATGTGAGGCTG 59.647 50.000 0.00 0.00 0.00 4.85
353 354 2.632377 CGGATTTGTGTATGTGAGGCT 58.368 47.619 0.00 0.00 0.00 4.58
354 355 1.670811 CCGGATTTGTGTATGTGAGGC 59.329 52.381 0.00 0.00 0.00 4.70
355 356 2.936498 GTCCGGATTTGTGTATGTGAGG 59.064 50.000 7.81 0.00 0.00 3.86
356 357 2.603110 CGTCCGGATTTGTGTATGTGAG 59.397 50.000 7.81 0.00 0.00 3.51
357 358 2.612604 CGTCCGGATTTGTGTATGTGA 58.387 47.619 7.81 0.00 0.00 3.58
358 359 1.663643 CCGTCCGGATTTGTGTATGTG 59.336 52.381 7.81 0.00 37.50 3.21
359 360 1.551430 TCCGTCCGGATTTGTGTATGT 59.449 47.619 7.81 0.00 39.76 2.29
360 361 2.303163 TCCGTCCGGATTTGTGTATG 57.697 50.000 7.81 0.00 39.76 2.39
370 371 2.473891 TAGAGCAGTGTCCGTCCGGA 62.474 60.000 0.00 0.00 42.90 5.14
371 372 1.384989 ATAGAGCAGTGTCCGTCCGG 61.385 60.000 0.00 0.00 0.00 5.14
372 373 0.456221 AATAGAGCAGTGTCCGTCCG 59.544 55.000 0.00 0.00 0.00 4.79
373 374 1.927895 CAATAGAGCAGTGTCCGTCC 58.072 55.000 0.00 0.00 0.00 4.79
374 375 1.281899 GCAATAGAGCAGTGTCCGTC 58.718 55.000 0.00 0.00 0.00 4.79
375 376 0.108138 GGCAATAGAGCAGTGTCCGT 60.108 55.000 0.00 0.00 35.83 4.69
376 377 0.108186 TGGCAATAGAGCAGTGTCCG 60.108 55.000 0.00 0.00 35.83 4.79
377 378 2.216898 GATGGCAATAGAGCAGTGTCC 58.783 52.381 0.00 0.00 35.83 4.02
378 379 2.216898 GGATGGCAATAGAGCAGTGTC 58.783 52.381 0.00 0.00 35.83 3.67
379 380 1.133976 GGGATGGCAATAGAGCAGTGT 60.134 52.381 0.00 0.00 35.83 3.55
380 381 1.134007 TGGGATGGCAATAGAGCAGTG 60.134 52.381 0.00 0.00 35.83 3.66
381 382 1.216064 TGGGATGGCAATAGAGCAGT 58.784 50.000 0.00 0.00 35.83 4.40
382 383 2.353357 TTGGGATGGCAATAGAGCAG 57.647 50.000 0.00 0.00 35.83 4.24
383 384 2.378038 GTTTGGGATGGCAATAGAGCA 58.622 47.619 0.00 0.00 35.83 4.26
384 385 1.334869 CGTTTGGGATGGCAATAGAGC 59.665 52.381 0.00 0.00 0.00 4.09
385 386 2.917933 TCGTTTGGGATGGCAATAGAG 58.082 47.619 0.00 0.00 0.00 2.43
386 387 3.013921 GTTCGTTTGGGATGGCAATAGA 58.986 45.455 0.00 0.00 0.00 1.98
387 388 2.752354 TGTTCGTTTGGGATGGCAATAG 59.248 45.455 0.00 0.00 0.00 1.73
388 389 2.796557 TGTTCGTTTGGGATGGCAATA 58.203 42.857 0.00 0.00 0.00 1.90
389 390 1.626686 TGTTCGTTTGGGATGGCAAT 58.373 45.000 0.00 0.00 0.00 3.56
390 391 1.403814 TTGTTCGTTTGGGATGGCAA 58.596 45.000 0.00 0.00 0.00 4.52
391 392 1.403814 TTTGTTCGTTTGGGATGGCA 58.596 45.000 0.00 0.00 0.00 4.92
392 393 2.606108 GATTTGTTCGTTTGGGATGGC 58.394 47.619 0.00 0.00 0.00 4.40
393 394 2.415357 CGGATTTGTTCGTTTGGGATGG 60.415 50.000 0.00 0.00 0.00 3.51
394 395 2.486203 TCGGATTTGTTCGTTTGGGATG 59.514 45.455 0.00 0.00 0.00 3.51
395 396 2.785562 TCGGATTTGTTCGTTTGGGAT 58.214 42.857 0.00 0.00 0.00 3.85
396 397 2.257691 TCGGATTTGTTCGTTTGGGA 57.742 45.000 0.00 0.00 0.00 4.37
397 398 2.033550 TGTTCGGATTTGTTCGTTTGGG 59.966 45.455 0.00 0.00 0.00 4.12
398 399 3.341857 TGTTCGGATTTGTTCGTTTGG 57.658 42.857 0.00 0.00 0.00 3.28
399 400 6.799441 TGATATTGTTCGGATTTGTTCGTTTG 59.201 34.615 0.00 0.00 0.00 2.93
400 401 6.904498 TGATATTGTTCGGATTTGTTCGTTT 58.096 32.000 0.00 0.00 0.00 3.60
401 402 6.148811 ACTGATATTGTTCGGATTTGTTCGTT 59.851 34.615 0.00 0.00 0.00 3.85
402 403 5.642063 ACTGATATTGTTCGGATTTGTTCGT 59.358 36.000 0.00 0.00 0.00 3.85
403 404 5.959527 CACTGATATTGTTCGGATTTGTTCG 59.040 40.000 0.00 0.00 0.00 3.95
404 405 6.742718 CACACTGATATTGTTCGGATTTGTTC 59.257 38.462 0.00 0.00 0.00 3.18
405 406 6.206634 ACACACTGATATTGTTCGGATTTGTT 59.793 34.615 0.00 0.00 0.00 2.83
406 407 5.705441 ACACACTGATATTGTTCGGATTTGT 59.295 36.000 0.00 0.00 0.00 2.83
407 408 6.182039 ACACACTGATATTGTTCGGATTTG 57.818 37.500 0.00 0.00 0.00 2.32
408 409 6.817765 AACACACTGATATTGTTCGGATTT 57.182 33.333 0.00 0.00 0.00 2.17
409 410 6.422776 GAACACACTGATATTGTTCGGATT 57.577 37.500 2.35 0.00 39.69 3.01
414 415 4.697352 AGGCTGAACACACTGATATTGTTC 59.303 41.667 9.37 9.37 46.20 3.18
415 416 4.655963 AGGCTGAACACACTGATATTGTT 58.344 39.130 0.00 0.00 36.16 2.83
416 417 4.292186 AGGCTGAACACACTGATATTGT 57.708 40.909 0.00 0.00 0.00 2.71
417 418 4.095483 GGAAGGCTGAACACACTGATATTG 59.905 45.833 0.00 0.00 0.00 1.90
418 419 4.265073 GGAAGGCTGAACACACTGATATT 58.735 43.478 0.00 0.00 0.00 1.28
419 420 3.679917 CGGAAGGCTGAACACACTGATAT 60.680 47.826 0.00 0.00 0.00 1.63
420 421 2.353704 CGGAAGGCTGAACACACTGATA 60.354 50.000 0.00 0.00 0.00 2.15
421 422 1.609061 CGGAAGGCTGAACACACTGAT 60.609 52.381 0.00 0.00 0.00 2.90
422 423 0.249868 CGGAAGGCTGAACACACTGA 60.250 55.000 0.00 0.00 0.00 3.41
423 424 0.532862 ACGGAAGGCTGAACACACTG 60.533 55.000 0.00 0.00 0.00 3.66
424 425 0.180406 AACGGAAGGCTGAACACACT 59.820 50.000 0.00 0.00 0.00 3.55
425 426 0.307760 CAACGGAAGGCTGAACACAC 59.692 55.000 0.00 0.00 0.00 3.82
432 433 1.522668 TGATGAACAACGGAAGGCTG 58.477 50.000 0.00 0.00 0.00 4.85
438 439 2.183478 ACTGCATGATGAACAACGGA 57.817 45.000 0.00 0.00 0.00 4.69
439 440 2.725759 CGAACTGCATGATGAACAACGG 60.726 50.000 0.00 0.00 0.00 4.44
491 492 2.807622 GCCCGAAACCATGGCATC 59.192 61.111 13.04 9.55 44.70 3.91
543 544 3.578688 GAACGCCTAGAAAGACGGTAAA 58.421 45.455 0.00 0.00 0.00 2.01
580 581 2.743718 CGAGTGTGGCAGAGGGTT 59.256 61.111 0.00 0.00 0.00 4.11
624 625 1.530013 GCCATGCCAGTCTTTGCAGT 61.530 55.000 0.78 0.00 41.46 4.40
691 692 5.537188 CAGATAAGAGATTCCAGTGCTACC 58.463 45.833 0.00 0.00 0.00 3.18
698 699 3.571828 TCGAGGCAGATAAGAGATTCCAG 59.428 47.826 0.00 0.00 0.00 3.86
736 738 5.411781 AGCTAAACGATGGTCAGTAGAAAG 58.588 41.667 0.00 0.00 0.00 2.62
778 781 5.520376 AGGCTTATATGGACAAATGCAAC 57.480 39.130 0.00 0.00 0.00 4.17
783 786 5.527582 GTGTTCGAGGCTTATATGGACAAAT 59.472 40.000 0.00 0.00 0.00 2.32
798 801 2.095461 TGAGGAGAGATGTGTTCGAGG 58.905 52.381 0.00 0.00 0.00 4.63
801 804 1.821753 AGGTGAGGAGAGATGTGTTCG 59.178 52.381 0.00 0.00 0.00 3.95
802 805 2.828520 TGAGGTGAGGAGAGATGTGTTC 59.171 50.000 0.00 0.00 0.00 3.18
814 821 4.223032 ACCAGTAACAGTAATGAGGTGAGG 59.777 45.833 0.00 0.00 0.00 3.86
818 825 5.721960 AGATCACCAGTAACAGTAATGAGGT 59.278 40.000 0.00 0.00 0.00 3.85
823 830 7.667575 AGATCAGATCACCAGTAACAGTAAT 57.332 36.000 13.14 0.00 0.00 1.89
876 883 3.592814 CATGGGCCATGAGCAGCG 61.593 66.667 37.69 11.99 43.81 5.18
877 884 2.124024 TCATGGGCCATGAGCAGC 60.124 61.111 38.75 0.00 44.60 5.25
933 953 6.183360 GGTTAGTGCAAAGTGTAAGGAAAACT 60.183 38.462 0.00 0.00 0.00 2.66
959 979 3.935203 CGTAGTACTACCGAACAGAGGAA 59.065 47.826 24.06 0.00 32.61 3.36
1084 1110 2.520741 GGAGGAGGAGGAGCCGAG 60.521 72.222 0.00 0.00 43.43 4.63
1146 1172 2.426738 GACCTCTGTGTCCAGATCAGAG 59.573 54.545 17.93 17.93 46.38 3.35
1176 1202 3.072211 GGTAGTGGTAAGTTGGAGTTGC 58.928 50.000 0.00 0.00 0.00 4.17
1184 1210 3.081804 GCATTGCAGGTAGTGGTAAGTT 58.918 45.455 3.15 0.00 0.00 2.66
1185 1211 2.039746 TGCATTGCAGGTAGTGGTAAGT 59.960 45.455 7.38 0.00 33.32 2.24
1188 1214 2.224646 TGTTGCATTGCAGGTAGTGGTA 60.225 45.455 11.76 0.00 40.61 3.25
1189 1215 1.247567 GTTGCATTGCAGGTAGTGGT 58.752 50.000 11.76 0.00 40.61 4.16
1190 1216 1.200716 CTGTTGCATTGCAGGTAGTGG 59.799 52.381 11.76 0.00 40.61 4.00
1191 1217 1.881973 ACTGTTGCATTGCAGGTAGTG 59.118 47.619 11.76 3.54 40.61 2.74
1192 1218 2.154462 GACTGTTGCATTGCAGGTAGT 58.846 47.619 18.35 18.35 40.61 2.73
1195 1221 1.951510 CGACTGTTGCATTGCAGGT 59.048 52.632 11.76 11.74 40.61 4.00
1196 1222 1.443194 GCGACTGTTGCATTGCAGG 60.443 57.895 15.05 8.78 40.61 4.85
1204 1230 1.055338 GCTTGAAATGCGACTGTTGC 58.945 50.000 13.15 13.15 0.00 4.17
1205 1231 1.001487 TGGCTTGAAATGCGACTGTTG 60.001 47.619 0.00 0.00 37.98 3.33
1212 1238 0.038892 AACTGCTGGCTTGAAATGCG 60.039 50.000 0.00 0.00 37.98 4.73
1216 1242 1.032014 GTCCAACTGCTGGCTTGAAA 58.968 50.000 0.00 0.00 45.98 2.69
1218 1244 0.183492 AAGTCCAACTGCTGGCTTGA 59.817 50.000 6.14 0.00 45.98 3.02
1219 1245 0.313043 CAAGTCCAACTGCTGGCTTG 59.687 55.000 14.99 14.99 45.98 4.01
1221 1247 0.403271 ATCAAGTCCAACTGCTGGCT 59.597 50.000 0.00 0.00 45.98 4.75
1223 1249 3.767955 GAGCATCAAGTCCAACTGCTGG 61.768 54.545 0.00 0.00 42.87 4.85
1228 1254 1.612726 GCAGGAGCATCAAGTCCAACT 60.613 52.381 0.00 0.00 41.58 3.16
1230 1256 0.694771 AGCAGGAGCATCAAGTCCAA 59.305 50.000 0.00 0.00 45.49 3.53
1231 1257 0.694771 AAGCAGGAGCATCAAGTCCA 59.305 50.000 0.00 0.00 45.49 4.02
1232 1258 1.065564 AGAAGCAGGAGCATCAAGTCC 60.066 52.381 0.00 0.00 45.49 3.85
1233 1259 2.399916 AGAAGCAGGAGCATCAAGTC 57.600 50.000 0.00 0.00 45.49 3.01
1234 1260 2.836981 AGTAGAAGCAGGAGCATCAAGT 59.163 45.455 0.00 0.00 45.49 3.16
1235 1261 3.540314 AGTAGAAGCAGGAGCATCAAG 57.460 47.619 0.00 0.00 45.49 3.02
1583 1609 4.214986 TGCAAATCTTATTCCTCCGTCA 57.785 40.909 0.00 0.00 0.00 4.35
1653 1681 3.565307 TCAAAAAGAGCAACATGTCCCT 58.435 40.909 0.00 0.00 0.00 4.20
1654 1682 4.320608 TTCAAAAAGAGCAACATGTCCC 57.679 40.909 0.00 0.00 0.00 4.46
1655 1683 6.089954 GCTAATTCAAAAAGAGCAACATGTCC 59.910 38.462 0.00 0.00 33.26 4.02
1656 1684 6.183359 CGCTAATTCAAAAAGAGCAACATGTC 60.183 38.462 0.00 0.00 32.55 3.06
1657 1685 5.630680 CGCTAATTCAAAAAGAGCAACATGT 59.369 36.000 0.00 0.00 32.55 3.21
1658 1686 5.630680 ACGCTAATTCAAAAAGAGCAACATG 59.369 36.000 0.00 0.00 32.55 3.21
1659 1687 5.630680 CACGCTAATTCAAAAAGAGCAACAT 59.369 36.000 0.00 0.00 32.55 2.71
1660 1688 4.975502 CACGCTAATTCAAAAAGAGCAACA 59.024 37.500 0.00 0.00 32.55 3.33
1661 1689 5.212194 TCACGCTAATTCAAAAAGAGCAAC 58.788 37.500 0.00 0.00 32.55 4.17
1662 1690 5.431420 TCACGCTAATTCAAAAAGAGCAA 57.569 34.783 0.00 0.00 32.55 3.91
1663 1691 4.613622 GCTCACGCTAATTCAAAAAGAGCA 60.614 41.667 0.00 0.00 43.84 4.26
1664 1692 3.848582 GCTCACGCTAATTCAAAAAGAGC 59.151 43.478 0.00 0.00 39.09 4.09
1665 1693 4.084507 CGCTCACGCTAATTCAAAAAGAG 58.915 43.478 0.00 0.00 0.00 2.85
1666 1694 3.743911 TCGCTCACGCTAATTCAAAAAGA 59.256 39.130 0.00 0.00 39.84 2.52
1667 1695 4.065423 TCGCTCACGCTAATTCAAAAAG 57.935 40.909 0.00 0.00 39.84 2.27
1668 1696 4.475763 TTCGCTCACGCTAATTCAAAAA 57.524 36.364 0.00 0.00 39.84 1.94
1669 1697 4.475763 TTTCGCTCACGCTAATTCAAAA 57.524 36.364 0.00 0.00 39.84 2.44
1670 1698 4.475763 TTTTCGCTCACGCTAATTCAAA 57.524 36.364 0.00 0.00 39.84 2.69
1671 1699 4.475763 TTTTTCGCTCACGCTAATTCAA 57.524 36.364 0.00 0.00 39.84 2.69
1692 1720 5.746721 GTCGACAAACTTAGTGCCAATTTTT 59.253 36.000 11.55 0.00 0.00 1.94
1693 1721 5.067283 AGTCGACAAACTTAGTGCCAATTTT 59.933 36.000 19.50 0.00 0.00 1.82
1694 1722 4.578928 AGTCGACAAACTTAGTGCCAATTT 59.421 37.500 19.50 0.00 0.00 1.82
1695 1723 4.134563 AGTCGACAAACTTAGTGCCAATT 58.865 39.130 19.50 0.00 0.00 2.32
1696 1724 3.740115 AGTCGACAAACTTAGTGCCAAT 58.260 40.909 19.50 0.00 0.00 3.16
1697 1725 3.188159 AGTCGACAAACTTAGTGCCAA 57.812 42.857 19.50 0.00 0.00 4.52
1698 1726 2.902705 AGTCGACAAACTTAGTGCCA 57.097 45.000 19.50 0.00 0.00 4.92
1699 1727 4.034742 TGAAAAGTCGACAAACTTAGTGCC 59.965 41.667 19.50 0.00 38.52 5.01
1700 1728 5.151632 TGAAAAGTCGACAAACTTAGTGC 57.848 39.130 19.50 0.00 38.52 4.40
1701 1729 8.614994 AAAATGAAAAGTCGACAAACTTAGTG 57.385 30.769 19.50 0.00 38.52 2.74
1729 1757 8.722394 GGGAAAAATAACTGTTGTTGTTCAAAA 58.278 29.630 24.87 0.00 36.68 2.44
1730 1758 7.334671 GGGGAAAAATAACTGTTGTTGTTCAAA 59.665 33.333 24.87 0.00 36.68 2.69
1731 1759 6.819146 GGGGAAAAATAACTGTTGTTGTTCAA 59.181 34.615 24.87 0.00 36.68 2.69
1732 1760 6.342111 GGGGAAAAATAACTGTTGTTGTTCA 58.658 36.000 24.87 0.00 36.68 3.18
1733 1761 5.460748 CGGGGAAAAATAACTGTTGTTGTTC 59.539 40.000 19.04 19.04 36.68 3.18
1734 1762 5.353111 CGGGGAAAAATAACTGTTGTTGTT 58.647 37.500 5.28 5.28 38.78 2.83
1735 1763 4.738243 GCGGGGAAAAATAACTGTTGTTGT 60.738 41.667 2.69 0.00 37.59 3.32
1736 1764 3.738791 GCGGGGAAAAATAACTGTTGTTG 59.261 43.478 2.69 0.00 37.59 3.33
1737 1765 3.385111 TGCGGGGAAAAATAACTGTTGTT 59.615 39.130 2.69 0.00 39.98 2.83
1738 1766 2.959707 TGCGGGGAAAAATAACTGTTGT 59.040 40.909 2.69 0.00 0.00 3.32
1739 1767 3.651803 TGCGGGGAAAAATAACTGTTG 57.348 42.857 2.69 0.00 0.00 3.33
1740 1768 4.674281 TTTGCGGGGAAAAATAACTGTT 57.326 36.364 0.00 0.00 0.00 3.16
1741 1769 4.674281 TTTTGCGGGGAAAAATAACTGT 57.326 36.364 0.00 0.00 0.00 3.55
1810 1838 0.868406 CGCCAAAGTGTGAGACCTTC 59.132 55.000 0.00 0.00 0.00 3.46
1841 1875 3.814842 CAGAAACATGACCTTGTACTGCA 59.185 43.478 0.00 0.00 32.07 4.41
1859 1893 0.677288 TCCGGCGTCTCTTTTCAGAA 59.323 50.000 6.01 0.00 0.00 3.02
1866 1900 0.810016 GTAGTTCTCCGGCGTCTCTT 59.190 55.000 6.01 0.00 0.00 2.85
1873 1907 0.750850 TAGGCATGTAGTTCTCCGGC 59.249 55.000 0.00 0.00 0.00 6.13
1874 1908 3.753294 AATAGGCATGTAGTTCTCCGG 57.247 47.619 0.00 0.00 0.00 5.14
1899 1935 8.779303 TCATCAAGTAAAGTTAGCGATCAAAAA 58.221 29.630 0.00 0.00 0.00 1.94
1917 1953 4.970662 ATGTTAAAGCGCATCATCAAGT 57.029 36.364 11.47 0.00 0.00 3.16
1954 2016 8.094798 TCTATTAAGCGTTGTCATCTTTTGTT 57.905 30.769 0.00 0.00 0.00 2.83
1956 2018 7.217070 GCTTCTATTAAGCGTTGTCATCTTTTG 59.783 37.037 0.00 0.00 33.20 2.44
1965 2027 7.417612 CCATTATTGCTTCTATTAAGCGTTGT 58.582 34.615 5.37 0.00 45.80 3.32
1967 2029 6.515035 GCCCATTATTGCTTCTATTAAGCGTT 60.515 38.462 5.37 0.00 45.80 4.84
1973 2036 8.170061 ACATAAGGCCCATTATTGCTTCTATTA 58.830 33.333 0.00 0.00 0.00 0.98
2013 2076 8.246180 CAGCAGTAACAAGTTCCATATTCAAAT 58.754 33.333 0.00 0.00 0.00 2.32
2062 2129 2.611224 CCCGAAACCACAGTACTACACC 60.611 54.545 0.00 0.00 0.00 4.16
2079 2146 2.587522 CAGATACTCTCCACATCCCGA 58.412 52.381 0.00 0.00 0.00 5.14
2089 2156 4.928615 GCCACAATGATAGCAGATACTCTC 59.071 45.833 0.00 0.00 0.00 3.20
2176 2450 0.954449 GTCACTGTCAGCAGCTGCAT 60.954 55.000 38.24 21.56 46.30 3.96
2249 2524 1.067354 GGCTTGGACAAATGAGGCAAG 60.067 52.381 0.00 0.00 35.07 4.01
2277 2552 2.751806 CTTGCAGGTCAAGGAATCTTCC 59.248 50.000 0.42 0.42 46.50 3.46
2342 2625 6.275335 CAGGACAAAATCAACACTCAACAAT 58.725 36.000 0.00 0.00 0.00 2.71
2431 2783 3.684788 CCCCGCATCAATATAACTAGTGC 59.315 47.826 0.00 0.00 0.00 4.40
2441 2793 0.036732 GGCTCATCCCCGCATCAATA 59.963 55.000 0.00 0.00 0.00 1.90
2465 2817 8.698973 TCCACAAATGATTAAGGTTTTACTGA 57.301 30.769 0.00 0.00 0.00 3.41
2511 2863 9.959721 TCTTGGTATATTAGAACAGAAGCTTTT 57.040 29.630 0.00 0.00 0.00 2.27
2537 2889 1.353694 AGGCTGCTTGGTTCTCATCTT 59.646 47.619 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.