Multiple sequence alignment - TraesCS3B01G391000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G391000 chr3B 100.000 5579 0 0 1 5579 616257646 616263224 0.000000e+00 10303.0
1 TraesCS3B01G391000 chr3B 89.199 1361 110 12 3801 5152 615778253 615776921 0.000000e+00 1664.0
2 TraesCS3B01G391000 chr3B 99.000 100 1 0 720 819 616258265 616258364 4.440000e-41 180.0
3 TraesCS3B01G391000 chr3B 99.000 100 1 0 620 719 616258365 616258464 4.440000e-41 180.0
4 TraesCS3B01G391000 chr3B 93.750 64 4 0 2978 3041 616260384 616260447 4.600000e-16 97.1
5 TraesCS3B01G391000 chr3B 93.750 64 4 0 2739 2802 616260623 616260686 4.600000e-16 97.1
6 TraesCS3B01G391000 chr3D 94.611 4509 190 22 720 5185 462864499 462860001 0.000000e+00 6931.0
7 TraesCS3B01G391000 chr3D 94.597 2517 94 14 2454 4935 463184417 463186926 0.000000e+00 3856.0
8 TraesCS3B01G391000 chr3D 93.160 1535 81 10 720 2233 463182524 463184055 0.000000e+00 2231.0
9 TraesCS3B01G391000 chr3D 90.019 531 23 7 190 719 462864901 462864400 0.000000e+00 660.0
10 TraesCS3B01G391000 chr3D 89.753 527 24 9 194 719 463182126 463182623 0.000000e+00 647.0
11 TraesCS3B01G391000 chr3D 92.105 228 11 2 2239 2459 463184113 463184340 1.170000e-81 315.0
12 TraesCS3B01G391000 chr3D 95.312 64 3 0 2978 3041 463184705 463184768 9.890000e-18 102.0
13 TraesCS3B01G391000 chr3D 95.082 61 3 0 2742 2802 462862209 462862149 4.600000e-16 97.1
14 TraesCS3B01G391000 chr3D 95.918 49 0 2 2743 2791 462862294 462862248 1.670000e-10 78.7
15 TraesCS3B01G391000 chr3D 93.878 49 1 2 2743 2791 463184877 463184923 7.750000e-09 73.1
16 TraesCS3B01G391000 chr3A 94.006 2736 114 16 2552 5248 606430601 606433325 0.000000e+00 4098.0
17 TraesCS3B01G391000 chr3A 92.460 1817 110 9 720 2519 606428793 606430599 0.000000e+00 2571.0
18 TraesCS3B01G391000 chr3A 87.059 680 47 21 59 719 606428238 606428895 0.000000e+00 730.0
19 TraesCS3B01G391000 chr3A 92.188 64 5 0 2739 2802 606431049 606431112 2.140000e-14 91.6
20 TraesCS3B01G391000 chr3A 100.000 31 0 0 190 220 606428402 606428432 2.170000e-04 58.4
21 TraesCS3B01G391000 chr7A 79.944 2134 333 69 3053 5146 30660223 30658145 0.000000e+00 1482.0
22 TraesCS3B01G391000 chr7A 78.184 1476 255 44 1099 2546 30663838 30662402 0.000000e+00 880.0
23 TraesCS3B01G391000 chr7A 79.134 254 32 11 393 644 30664358 30664124 7.480000e-34 156.0
24 TraesCS3B01G391000 chr7A 85.075 134 14 3 5446 5576 45919206 45919076 1.260000e-26 132.0
25 TraesCS3B01G391000 chr4A 79.488 2072 337 60 3053 5082 698133315 698135340 0.000000e+00 1391.0
26 TraesCS3B01G391000 chr4A 79.360 2001 328 51 3046 5013 698906160 698908108 0.000000e+00 1328.0
27 TraesCS3B01G391000 chr4A 80.965 746 127 10 1099 1836 698903375 698904113 1.350000e-160 577.0
28 TraesCS3B01G391000 chr7D 80.206 1556 256 35 3322 4864 30270251 30268735 0.000000e+00 1120.0
29 TraesCS3B01G391000 chr2A 82.075 954 146 12 4003 4945 30935102 30936041 0.000000e+00 791.0
30 TraesCS3B01G391000 chrUn 84.895 715 100 6 1181 1887 17017752 17017038 0.000000e+00 715.0
31 TraesCS3B01G391000 chrUn 84.755 715 101 6 1181 1887 381001287 381000573 0.000000e+00 710.0
32 TraesCS3B01G391000 chr6D 73.629 474 103 19 3217 3679 468089171 468088709 4.470000e-36 163.0
33 TraesCS3B01G391000 chr5D 92.958 71 5 0 5506 5576 477382238 477382308 2.750000e-18 104.0
34 TraesCS3B01G391000 chr4B 100.000 28 0 0 8 35 172323735 172323708 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G391000 chr3B 616257646 616263224 5578 False 10303.000000 10303 100.000000 1 5579 1 chr3B.!!$F1 5578
1 TraesCS3B01G391000 chr3B 615776921 615778253 1332 True 1664.000000 1664 89.199000 3801 5152 1 chr3B.!!$R1 1351
2 TraesCS3B01G391000 chr3D 462860001 462864901 4900 True 1941.700000 6931 93.907500 190 5185 4 chr3D.!!$R1 4995
3 TraesCS3B01G391000 chr3D 463182126 463186926 4800 False 1204.016667 3856 93.134167 194 4935 6 chr3D.!!$F1 4741
4 TraesCS3B01G391000 chr3A 606428238 606433325 5087 False 1509.800000 4098 93.142600 59 5248 5 chr3A.!!$F1 5189
5 TraesCS3B01G391000 chr7A 30658145 30664358 6213 True 839.333333 1482 79.087333 393 5146 3 chr7A.!!$R2 4753
6 TraesCS3B01G391000 chr4A 698133315 698135340 2025 False 1391.000000 1391 79.488000 3053 5082 1 chr4A.!!$F1 2029
7 TraesCS3B01G391000 chr4A 698903375 698908108 4733 False 952.500000 1328 80.162500 1099 5013 2 chr4A.!!$F2 3914
8 TraesCS3B01G391000 chr7D 30268735 30270251 1516 True 1120.000000 1120 80.206000 3322 4864 1 chr7D.!!$R1 1542
9 TraesCS3B01G391000 chr2A 30935102 30936041 939 False 791.000000 791 82.075000 4003 4945 1 chr2A.!!$F1 942
10 TraesCS3B01G391000 chrUn 17017038 17017752 714 True 715.000000 715 84.895000 1181 1887 1 chrUn.!!$R1 706
11 TraesCS3B01G391000 chrUn 381000573 381001287 714 True 710.000000 710 84.755000 1181 1887 1 chrUn.!!$R2 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.038310 GCACCTCTAGCAAACCCCTT 59.962 55.000 0.00 0.00 0.00 3.95 F
1414 1524 0.250338 ACTTCCGAACCTGCCTTCAC 60.250 55.000 0.00 0.00 0.00 3.18 F
1822 1940 1.556911 CTCTGTACCTGGCCATCTTGT 59.443 52.381 5.51 4.08 0.00 3.16 F
3569 5618 2.481952 AGTTCTGCTTGCAGAAATCGAC 59.518 45.455 31.38 22.12 42.12 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1889 0.250727 TCTTTCGGGAAACTGGCCAG 60.251 55.0 31.60 31.60 37.31 4.85 R
2523 2814 3.270877 CTGTGGCTTGGTACATACCTTC 58.729 50.0 9.46 0.00 46.58 3.46 R
3819 5871 2.288395 GCCAAACCACACAAATCTCCAG 60.288 50.0 0.00 0.00 0.00 3.86 R
5337 7429 0.244994 TCTGGAGCGCTCTCTTTCAC 59.755 55.0 34.46 17.81 39.31 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.532988 AAAGTTACCTAAGAGCACCTCTAG 57.467 41.667 0.00 0.00 40.28 2.43
24 25 3.955551 AGTTACCTAAGAGCACCTCTAGC 59.044 47.826 0.00 0.00 40.28 3.42
25 26 2.534042 ACCTAAGAGCACCTCTAGCA 57.466 50.000 0.00 0.00 40.28 3.49
26 27 2.821437 ACCTAAGAGCACCTCTAGCAA 58.179 47.619 0.00 0.00 40.28 3.91
27 28 3.173965 ACCTAAGAGCACCTCTAGCAAA 58.826 45.455 0.00 0.00 40.28 3.68
28 29 3.055747 ACCTAAGAGCACCTCTAGCAAAC 60.056 47.826 0.00 0.00 40.28 2.93
29 30 2.481289 AAGAGCACCTCTAGCAAACC 57.519 50.000 0.00 0.00 40.28 3.27
30 31 0.615850 AGAGCACCTCTAGCAAACCC 59.384 55.000 0.00 0.00 39.28 4.11
31 32 0.393132 GAGCACCTCTAGCAAACCCC 60.393 60.000 0.00 0.00 0.00 4.95
32 33 0.842467 AGCACCTCTAGCAAACCCCT 60.842 55.000 0.00 0.00 0.00 4.79
33 34 0.038310 GCACCTCTAGCAAACCCCTT 59.962 55.000 0.00 0.00 0.00 3.95
34 35 1.280998 GCACCTCTAGCAAACCCCTTA 59.719 52.381 0.00 0.00 0.00 2.69
35 36 2.092375 GCACCTCTAGCAAACCCCTTAT 60.092 50.000 0.00 0.00 0.00 1.73
36 37 3.135895 GCACCTCTAGCAAACCCCTTATA 59.864 47.826 0.00 0.00 0.00 0.98
37 38 4.202472 GCACCTCTAGCAAACCCCTTATAT 60.202 45.833 0.00 0.00 0.00 0.86
38 39 5.308825 CACCTCTAGCAAACCCCTTATATG 58.691 45.833 0.00 0.00 0.00 1.78
39 40 4.202472 ACCTCTAGCAAACCCCTTATATGC 60.202 45.833 0.00 0.00 37.28 3.14
41 42 5.456763 CCTCTAGCAAACCCCTTATATGCTT 60.457 44.000 3.73 0.00 44.43 3.91
42 43 6.013554 TCTAGCAAACCCCTTATATGCTTT 57.986 37.500 3.73 0.00 44.43 3.51
43 44 6.431722 TCTAGCAAACCCCTTATATGCTTTT 58.568 36.000 3.73 0.00 44.43 2.27
44 45 7.579105 TCTAGCAAACCCCTTATATGCTTTTA 58.421 34.615 3.73 0.00 44.43 1.52
45 46 8.056400 TCTAGCAAACCCCTTATATGCTTTTAA 58.944 33.333 3.73 0.00 44.43 1.52
46 47 7.112452 AGCAAACCCCTTATATGCTTTTAAG 57.888 36.000 0.00 3.70 44.43 1.85
47 48 6.667848 AGCAAACCCCTTATATGCTTTTAAGT 59.332 34.615 8.36 0.00 44.43 2.24
48 49 6.978659 GCAAACCCCTTATATGCTTTTAAGTC 59.021 38.462 8.36 0.00 34.29 3.01
49 50 6.937436 AACCCCTTATATGCTTTTAAGTCG 57.063 37.500 8.36 2.43 0.00 4.18
50 51 5.374071 ACCCCTTATATGCTTTTAAGTCGG 58.626 41.667 8.36 9.00 0.00 4.79
51 52 4.760204 CCCCTTATATGCTTTTAAGTCGGG 59.240 45.833 8.36 8.46 0.00 5.14
52 53 5.455612 CCCCTTATATGCTTTTAAGTCGGGA 60.456 44.000 13.68 0.00 32.69 5.14
53 54 6.059484 CCCTTATATGCTTTTAAGTCGGGAA 58.941 40.000 8.36 0.00 0.00 3.97
54 55 6.544564 CCCTTATATGCTTTTAAGTCGGGAAA 59.455 38.462 8.36 0.00 0.00 3.13
55 56 7.255139 CCCTTATATGCTTTTAAGTCGGGAAAG 60.255 40.741 8.36 0.00 34.38 2.62
56 57 7.497909 CCTTATATGCTTTTAAGTCGGGAAAGA 59.502 37.037 8.36 0.00 33.35 2.52
57 58 8.795842 TTATATGCTTTTAAGTCGGGAAAGAA 57.204 30.769 0.00 0.00 33.35 2.52
70 71 2.293399 GGGAAAGAACACATCCACACAC 59.707 50.000 0.00 0.00 34.82 3.82
71 72 2.948979 GGAAAGAACACATCCACACACA 59.051 45.455 0.00 0.00 33.30 3.72
79 80 7.725251 AGAACACATCCACACACAAAATTTAT 58.275 30.769 0.00 0.00 0.00 1.40
80 81 8.855110 AGAACACATCCACACACAAAATTTATA 58.145 29.630 0.00 0.00 0.00 0.98
81 82 9.638239 GAACACATCCACACACAAAATTTATAT 57.362 29.630 0.00 0.00 0.00 0.86
82 83 8.984891 ACACATCCACACACAAAATTTATATG 57.015 30.769 0.00 0.00 0.00 1.78
83 84 7.545265 ACACATCCACACACAAAATTTATATGC 59.455 33.333 0.00 0.00 0.00 3.14
85 86 8.965819 ACATCCACACACAAAATTTATATGCTA 58.034 29.630 0.00 0.00 0.00 3.49
86 87 9.454585 CATCCACACACAAAATTTATATGCTAG 57.545 33.333 0.00 0.00 0.00 3.42
87 88 8.574251 TCCACACACAAAATTTATATGCTAGT 57.426 30.769 0.00 0.00 0.00 2.57
88 89 8.458052 TCCACACACAAAATTTATATGCTAGTG 58.542 33.333 0.00 0.28 0.00 2.74
151 158 2.679837 ACAGGAATAGCGTTGCATCTTG 59.320 45.455 0.00 0.00 0.00 3.02
152 159 2.938451 CAGGAATAGCGTTGCATCTTGA 59.062 45.455 0.00 0.00 0.00 3.02
285 322 4.383602 GCCGCACGCGTTTGATGT 62.384 61.111 10.22 0.00 37.81 3.06
286 323 2.499520 CCGCACGCGTTTGATGTG 60.500 61.111 10.22 4.33 37.81 3.21
287 324 2.499520 CGCACGCGTTTGATGTGG 60.500 61.111 10.22 0.00 34.24 4.17
288 325 2.637025 GCACGCGTTTGATGTGGT 59.363 55.556 10.22 0.00 34.24 4.16
330 367 4.200283 CTCTGGCGTCGGCTCCTC 62.200 72.222 20.29 0.00 39.81 3.71
414 451 1.447314 GGGAACTCGTACGCTTGGG 60.447 63.158 11.24 0.71 0.00 4.12
415 452 1.447314 GGAACTCGTACGCTTGGGG 60.447 63.158 11.24 0.00 0.00 4.96
504 542 7.412891 CCCAACTTTGTTGAATTGTTTTGACTC 60.413 37.037 11.47 0.00 0.00 3.36
535 574 2.093973 TGAAATCTCGCTGTCTTCCCTC 60.094 50.000 0.00 0.00 0.00 4.30
581 621 5.926542 ACGAAAGATCCACCATATAATCACG 59.073 40.000 0.00 0.00 0.00 4.35
711 803 5.450818 ACTAATTGATTTGGACCAGGCTA 57.549 39.130 0.00 0.00 0.00 3.93
712 804 5.826643 ACTAATTGATTTGGACCAGGCTAA 58.173 37.500 0.00 0.00 0.00 3.09
713 805 6.435164 ACTAATTGATTTGGACCAGGCTAAT 58.565 36.000 0.00 0.00 0.00 1.73
714 806 6.897413 ACTAATTGATTTGGACCAGGCTAATT 59.103 34.615 0.00 4.50 0.00 1.40
715 807 8.058847 ACTAATTGATTTGGACCAGGCTAATTA 58.941 33.333 0.00 5.36 0.00 1.40
716 808 7.732222 AATTGATTTGGACCAGGCTAATTAA 57.268 32.000 0.00 0.00 0.00 1.40
717 809 7.732222 ATTGATTTGGACCAGGCTAATTAAA 57.268 32.000 0.00 0.00 0.00 1.52
718 810 6.773976 TGATTTGGACCAGGCTAATTAAAG 57.226 37.500 0.00 0.00 0.00 1.85
719 811 6.252995 TGATTTGGACCAGGCTAATTAAAGT 58.747 36.000 0.00 0.00 0.00 2.66
720 812 7.406916 TGATTTGGACCAGGCTAATTAAAGTA 58.593 34.615 0.00 0.00 0.00 2.24
721 813 7.556275 TGATTTGGACCAGGCTAATTAAAGTAG 59.444 37.037 0.00 0.00 0.00 2.57
722 814 4.777463 TGGACCAGGCTAATTAAAGTAGC 58.223 43.478 11.36 11.36 42.73 3.58
723 815 4.226394 TGGACCAGGCTAATTAAAGTAGCA 59.774 41.667 18.25 0.01 44.82 3.49
724 816 5.104109 TGGACCAGGCTAATTAAAGTAGCAT 60.104 40.000 18.25 11.58 44.82 3.79
725 817 6.100569 TGGACCAGGCTAATTAAAGTAGCATA 59.899 38.462 18.25 0.00 44.82 3.14
726 818 7.168905 GGACCAGGCTAATTAAAGTAGCATAT 58.831 38.462 18.25 7.46 44.82 1.78
727 819 7.665974 GGACCAGGCTAATTAAAGTAGCATATT 59.334 37.037 18.25 6.29 44.82 1.28
728 820 9.720769 GACCAGGCTAATTAAAGTAGCATATTA 57.279 33.333 18.25 0.00 44.82 0.98
739 831 9.778741 TTAAAGTAGCATATTATAGCAGCAACT 57.221 29.630 0.00 0.00 0.00 3.16
740 832 7.664082 AAGTAGCATATTATAGCAGCAACTG 57.336 36.000 0.00 0.00 34.12 3.16
741 833 6.763355 AGTAGCATATTATAGCAGCAACTGT 58.237 36.000 0.00 0.00 33.43 3.55
742 834 5.936686 AGCATATTATAGCAGCAACTGTG 57.063 39.130 0.00 0.00 33.43 3.66
743 835 5.371526 AGCATATTATAGCAGCAACTGTGT 58.628 37.500 0.00 0.00 33.43 3.72
744 836 5.237996 AGCATATTATAGCAGCAACTGTGTG 59.762 40.000 0.00 0.00 33.43 3.82
745 837 5.237127 GCATATTATAGCAGCAACTGTGTGA 59.763 40.000 0.00 0.00 33.43 3.58
746 838 6.072838 GCATATTATAGCAGCAACTGTGTGAT 60.073 38.462 0.00 0.00 33.43 3.06
747 839 5.746307 ATTATAGCAGCAACTGTGTGATG 57.254 39.130 0.00 4.59 37.96 3.07
748 840 2.549064 TAGCAGCAACTGTGTGATGT 57.451 45.000 0.00 1.95 37.24 3.06
749 841 0.949397 AGCAGCAACTGTGTGATGTG 59.051 50.000 0.00 0.00 37.24 3.21
750 842 0.946528 GCAGCAACTGTGTGATGTGA 59.053 50.000 8.97 0.00 37.24 3.58
751 843 1.538512 GCAGCAACTGTGTGATGTGAT 59.461 47.619 8.97 0.00 37.24 3.06
752 844 2.667448 GCAGCAACTGTGTGATGTGATG 60.667 50.000 8.97 0.91 37.24 3.07
753 845 2.809696 CAGCAACTGTGTGATGTGATGA 59.190 45.455 0.00 0.00 30.23 2.92
754 846 3.439129 CAGCAACTGTGTGATGTGATGAT 59.561 43.478 0.00 0.00 30.23 2.45
755 847 4.632688 CAGCAACTGTGTGATGTGATGATA 59.367 41.667 0.00 0.00 30.23 2.15
756 848 4.633126 AGCAACTGTGTGATGTGATGATAC 59.367 41.667 0.00 0.00 0.00 2.24
757 849 4.633126 GCAACTGTGTGATGTGATGATACT 59.367 41.667 0.00 0.00 0.00 2.12
758 850 5.812127 GCAACTGTGTGATGTGATGATACTA 59.188 40.000 0.00 0.00 0.00 1.82
759 851 6.313658 GCAACTGTGTGATGTGATGATACTAA 59.686 38.462 0.00 0.00 0.00 2.24
760 852 7.148423 GCAACTGTGTGATGTGATGATACTAAA 60.148 37.037 0.00 0.00 0.00 1.85
761 853 8.886719 CAACTGTGTGATGTGATGATACTAAAT 58.113 33.333 0.00 0.00 0.00 1.40
762 854 9.453572 AACTGTGTGATGTGATGATACTAAATT 57.546 29.630 0.00 0.00 0.00 1.82
784 876 9.905713 AAATTAATTAGTCCATCTAGTTGCAGA 57.094 29.630 0.01 0.00 32.28 4.26
785 877 9.905713 AATTAATTAGTCCATCTAGTTGCAGAA 57.094 29.630 0.00 0.00 32.28 3.02
787 879 9.905713 TTAATTAGTCCATCTAGTTGCAGAATT 57.094 29.630 0.00 2.34 32.28 2.17
789 881 9.905713 AATTAGTCCATCTAGTTGCAGAATTAA 57.094 29.630 0.00 0.00 29.46 1.40
853 947 6.830873 AGGAATGGAGAAGATGACTTTTTG 57.169 37.500 0.00 0.00 36.39 2.44
1005 1099 1.826340 ACGTAGTGGTGCTGATGGCA 61.826 55.000 0.00 0.00 45.74 4.92
1176 1285 3.499406 AGCATCCAGGCTTCCACA 58.501 55.556 0.00 0.00 42.71 4.17
1302 1412 3.188048 CGCATCCTTCCATGAATTCTAGC 59.812 47.826 7.05 0.00 0.00 3.42
1360 1470 1.228124 AGCTGCGGCAACAAAGGTA 60.228 52.632 21.93 0.00 41.70 3.08
1400 1510 4.005650 TCTGATGATGTTGAAGCACTTCC 58.994 43.478 7.88 0.00 38.77 3.46
1414 1524 0.250338 ACTTCCGAACCTGCCTTCAC 60.250 55.000 0.00 0.00 0.00 3.18
1467 1577 2.116125 GAAGGGGGCACTGCACTT 59.884 61.111 2.61 4.03 29.71 3.16
1539 1651 4.978099 ACATCATCCATAGTAAGGCAAGG 58.022 43.478 0.00 0.00 0.00 3.61
1579 1691 2.803817 AAGAACGGTGACACGCCCT 61.804 57.895 0.00 0.00 37.37 5.19
1638 1750 2.349590 TGTCATCTCATCACTTTGGCG 58.650 47.619 0.00 0.00 0.00 5.69
1657 1769 2.286536 GCGAGAGACGAGAATACAGGTC 60.287 54.545 0.00 0.00 45.77 3.85
1697 1809 4.287067 ACTCCTAGAGATTGAAAACAGCCA 59.713 41.667 0.00 0.00 33.32 4.75
1822 1940 1.556911 CTCTGTACCTGGCCATCTTGT 59.443 52.381 5.51 4.08 0.00 3.16
1887 2005 5.306937 TCACATGAAACTTTCCTACTCTGGA 59.693 40.000 0.00 0.00 0.00 3.86
2158 2281 3.630312 TCAGCTAACCAGTTTTGTTCCAC 59.370 43.478 0.00 0.00 0.00 4.02
2180 2303 3.404899 TGTGTACGGGAAAGTTTGATCC 58.595 45.455 0.00 0.00 34.85 3.36
2201 2324 6.439636 TCCATAATCCCCTGAGATAACAAG 57.560 41.667 0.00 0.00 0.00 3.16
2223 2346 7.041098 ACAAGTACTGCTCAAAATGGTCTTTAG 60.041 37.037 0.00 0.00 0.00 1.85
2232 2407 8.613482 GCTCAAAATGGTCTTTAGGTATTCTAC 58.387 37.037 0.00 0.00 0.00 2.59
2235 2410 9.226606 CAAAATGGTCTTTAGGTATTCTACACA 57.773 33.333 0.00 0.00 0.00 3.72
2285 2461 3.890756 TGCATTCCACCTAGCCATAATTG 59.109 43.478 0.00 0.00 0.00 2.32
2400 2586 3.570125 GGGGCCTCAAATTTCATAGTAGC 59.430 47.826 0.84 0.00 0.00 3.58
2423 2609 8.035448 AGCTAGGAGTAAATGGCTTATTACTT 57.965 34.615 10.11 1.63 41.23 2.24
2596 2889 3.629398 GCCTGTGCTGCAAATATAGTTCT 59.371 43.478 2.77 0.00 33.53 3.01
2611 2904 9.646522 AAATATAGTTCTGCTCCCAATGTATTT 57.353 29.630 0.00 0.00 0.00 1.40
3181 5223 7.765695 AATTGAGTGTGTCATTTCCATAGTT 57.234 32.000 0.00 0.00 34.17 2.24
3185 5227 6.204688 TGAGTGTGTCATTTCCATAGTTGTTC 59.795 38.462 0.00 0.00 0.00 3.18
3569 5618 2.481952 AGTTCTGCTTGCAGAAATCGAC 59.518 45.455 31.38 22.12 42.12 4.20
3730 5779 5.721960 TGGGCAAACTCCTCTAGATATATCC 59.278 44.000 9.18 0.00 0.00 2.59
3819 5871 5.116983 CCGTGTTTGATGTGAAAGCAAATAC 59.883 40.000 3.53 3.53 45.32 1.89
4044 6096 6.425114 CACTATGTATTGGTGTGGCTCTAATC 59.575 42.308 0.00 0.00 0.00 1.75
4105 6157 5.392380 GGAGGTTACAAAGCTGATGAACATG 60.392 44.000 6.76 0.00 39.77 3.21
4136 6188 0.751643 ACACCAACACTTGCTGGGAC 60.752 55.000 3.76 0.00 35.65 4.46
4263 6315 8.808529 CCACAGACTCGTAGAATTTACTTAATG 58.191 37.037 0.00 0.00 34.09 1.90
4264 6316 9.569167 CACAGACTCGTAGAATTTACTTAATGA 57.431 33.333 0.00 0.00 34.09 2.57
4362 6414 3.786656 AGTTGCTCACAAGTCTGCA 57.213 47.368 0.00 0.00 34.16 4.41
4390 6442 0.815615 CTGCGTCATTAGCCCCCTTC 60.816 60.000 0.00 0.00 0.00 3.46
4468 6520 7.556844 ACCATTATATACTCGAATTGGGCTAG 58.443 38.462 0.00 0.00 0.00 3.42
4556 6608 9.122779 CATAATATTCATTTTTGTTTGGGCCAT 57.877 29.630 7.26 0.00 0.00 4.40
4620 6686 3.181451 ACCAGCACTCATGACTTGAAGAA 60.181 43.478 0.00 0.00 32.78 2.52
4639 6705 5.429957 AGAAGCATCAAACACAGAACTTC 57.570 39.130 0.00 0.00 34.79 3.01
4870 6940 7.148590 GGTTTCAATTTTCCATGTATCACTTGC 60.149 37.037 0.00 0.00 0.00 4.01
4871 6941 5.639757 TCAATTTTCCATGTATCACTTGCG 58.360 37.500 0.00 0.00 0.00 4.85
4923 6998 7.029563 ACAAATCCACGAGCAAATAAATCTTC 58.970 34.615 0.00 0.00 0.00 2.87
4977 7052 3.599343 CACTAGTGCCTTGATACTTGCA 58.401 45.455 10.54 0.00 0.00 4.08
4997 7074 3.439293 CATCTGGTGTTAGTACTCTGCG 58.561 50.000 0.00 0.00 0.00 5.18
5061 7152 4.264253 TGCCCTCACATATGAAGTTTCAG 58.736 43.478 10.38 0.00 41.08 3.02
5062 7153 4.019411 TGCCCTCACATATGAAGTTTCAGA 60.019 41.667 10.38 0.00 41.08 3.27
5191 7283 4.329801 GGGCAATTAACATGCTTAAGTTGC 59.670 41.667 20.69 20.69 43.34 4.17
5205 7297 3.914426 AAGTTGCGTCAGGATAGGATT 57.086 42.857 0.00 0.00 0.00 3.01
5206 7298 3.185246 AGTTGCGTCAGGATAGGATTG 57.815 47.619 0.00 0.00 0.00 2.67
5214 7306 5.424757 CGTCAGGATAGGATTGTTTTGGTA 58.575 41.667 0.00 0.00 0.00 3.25
5307 7399 5.385509 TTTTTGCAAGTTATACTGCCCTC 57.614 39.130 0.00 0.00 0.00 4.30
5308 7400 4.301072 TTTGCAAGTTATACTGCCCTCT 57.699 40.909 0.00 0.00 0.00 3.69
5309 7401 4.301072 TTGCAAGTTATACTGCCCTCTT 57.699 40.909 0.00 0.00 0.00 2.85
5310 7402 5.429681 TTGCAAGTTATACTGCCCTCTTA 57.570 39.130 0.00 0.00 0.00 2.10
5311 7403 5.429681 TGCAAGTTATACTGCCCTCTTAA 57.570 39.130 0.00 0.00 0.00 1.85
5312 7404 5.811190 TGCAAGTTATACTGCCCTCTTAAA 58.189 37.500 0.00 0.00 0.00 1.52
5313 7405 6.242396 TGCAAGTTATACTGCCCTCTTAAAA 58.758 36.000 0.00 0.00 0.00 1.52
5314 7406 6.717540 TGCAAGTTATACTGCCCTCTTAAAAA 59.282 34.615 0.00 0.00 0.00 1.94
5315 7407 7.094377 TGCAAGTTATACTGCCCTCTTAAAAAG 60.094 37.037 0.00 0.00 0.00 2.27
5316 7408 7.094334 GCAAGTTATACTGCCCTCTTAAAAAGT 60.094 37.037 0.00 0.00 0.00 2.66
5317 7409 7.923414 AGTTATACTGCCCTCTTAAAAAGTG 57.077 36.000 0.00 0.00 0.00 3.16
5318 7410 7.686434 AGTTATACTGCCCTCTTAAAAAGTGA 58.314 34.615 0.00 0.00 0.00 3.41
5319 7411 7.824779 AGTTATACTGCCCTCTTAAAAAGTGAG 59.175 37.037 0.00 0.00 0.00 3.51
5320 7412 3.756117 ACTGCCCTCTTAAAAAGTGAGG 58.244 45.455 0.00 0.00 45.02 3.86
5321 7413 3.138468 ACTGCCCTCTTAAAAAGTGAGGT 59.862 43.478 7.38 0.00 44.21 3.85
5322 7414 3.751518 TGCCCTCTTAAAAAGTGAGGTC 58.248 45.455 7.38 0.00 44.21 3.85
5323 7415 3.137544 TGCCCTCTTAAAAAGTGAGGTCA 59.862 43.478 7.38 0.00 44.21 4.02
5324 7416 3.753797 GCCCTCTTAAAAAGTGAGGTCAG 59.246 47.826 7.38 0.00 44.21 3.51
5325 7417 4.505039 GCCCTCTTAAAAAGTGAGGTCAGA 60.505 45.833 7.38 0.00 44.21 3.27
5326 7418 5.241662 CCCTCTTAAAAAGTGAGGTCAGAG 58.758 45.833 7.38 0.00 44.21 3.35
5327 7419 5.241662 CCTCTTAAAAAGTGAGGTCAGAGG 58.758 45.833 0.00 0.00 41.64 3.69
5328 7420 5.228945 TCTTAAAAAGTGAGGTCAGAGGG 57.771 43.478 0.00 0.00 0.00 4.30
5329 7421 4.658901 TCTTAAAAAGTGAGGTCAGAGGGT 59.341 41.667 0.00 0.00 0.00 4.34
5330 7422 5.842328 TCTTAAAAAGTGAGGTCAGAGGGTA 59.158 40.000 0.00 0.00 0.00 3.69
5331 7423 6.328148 TCTTAAAAAGTGAGGTCAGAGGGTAA 59.672 38.462 0.00 0.00 0.00 2.85
5332 7424 5.382664 AAAAAGTGAGGTCAGAGGGTAAA 57.617 39.130 0.00 0.00 0.00 2.01
5333 7425 4.353383 AAAGTGAGGTCAGAGGGTAAAC 57.647 45.455 0.00 0.00 0.00 2.01
5334 7426 1.893801 AGTGAGGTCAGAGGGTAAACG 59.106 52.381 0.00 0.00 0.00 3.60
5335 7427 1.891150 GTGAGGTCAGAGGGTAAACGA 59.109 52.381 0.00 0.00 0.00 3.85
5336 7428 2.298163 GTGAGGTCAGAGGGTAAACGAA 59.702 50.000 0.00 0.00 0.00 3.85
5337 7429 2.561419 TGAGGTCAGAGGGTAAACGAAG 59.439 50.000 0.00 0.00 0.00 3.79
5339 7431 2.299297 AGGTCAGAGGGTAAACGAAGTG 59.701 50.000 0.00 0.00 45.00 3.16
5340 7432 2.298163 GGTCAGAGGGTAAACGAAGTGA 59.702 50.000 0.00 0.00 45.00 3.41
5341 7433 3.243975 GGTCAGAGGGTAAACGAAGTGAA 60.244 47.826 0.00 0.00 45.00 3.18
5342 7434 4.374399 GTCAGAGGGTAAACGAAGTGAAA 58.626 43.478 0.00 0.00 45.00 2.69
5343 7435 4.448060 GTCAGAGGGTAAACGAAGTGAAAG 59.552 45.833 0.00 0.00 45.00 2.62
5344 7436 4.342951 TCAGAGGGTAAACGAAGTGAAAGA 59.657 41.667 0.00 0.00 45.00 2.52
5345 7437 4.686554 CAGAGGGTAAACGAAGTGAAAGAG 59.313 45.833 0.00 0.00 45.00 2.85
5346 7438 4.587684 AGAGGGTAAACGAAGTGAAAGAGA 59.412 41.667 0.00 0.00 45.00 3.10
5347 7439 4.884247 AGGGTAAACGAAGTGAAAGAGAG 58.116 43.478 0.00 0.00 45.00 3.20
5348 7440 3.432592 GGGTAAACGAAGTGAAAGAGAGC 59.567 47.826 0.00 0.00 45.00 4.09
5349 7441 3.121445 GGTAAACGAAGTGAAAGAGAGCG 59.879 47.826 0.00 0.00 45.00 5.03
5350 7442 1.140816 AACGAAGTGAAAGAGAGCGC 58.859 50.000 0.00 0.00 45.00 5.92
5351 7443 0.315568 ACGAAGTGAAAGAGAGCGCT 59.684 50.000 11.27 11.27 42.51 5.92
5352 7444 0.988439 CGAAGTGAAAGAGAGCGCTC 59.012 55.000 30.01 30.01 41.62 5.03
5353 7445 1.355005 GAAGTGAAAGAGAGCGCTCC 58.645 55.000 32.94 23.39 42.30 4.70
5354 7446 0.681733 AAGTGAAAGAGAGCGCTCCA 59.318 50.000 32.94 20.44 42.30 3.86
5355 7447 0.246086 AGTGAAAGAGAGCGCTCCAG 59.754 55.000 32.94 0.00 42.30 3.86
5356 7448 0.244994 GTGAAAGAGAGCGCTCCAGA 59.755 55.000 32.94 9.30 42.30 3.86
5357 7449 0.969149 TGAAAGAGAGCGCTCCAGAA 59.031 50.000 32.94 12.09 42.30 3.02
5358 7450 1.067283 TGAAAGAGAGCGCTCCAGAAG 60.067 52.381 32.94 0.00 42.30 2.85
5359 7451 1.203523 GAAAGAGAGCGCTCCAGAAGA 59.796 52.381 32.94 0.00 42.30 2.87
5360 7452 1.261480 AAGAGAGCGCTCCAGAAGAA 58.739 50.000 32.94 0.00 42.30 2.52
5361 7453 1.261480 AGAGAGCGCTCCAGAAGAAA 58.739 50.000 32.94 0.00 42.30 2.52
5362 7454 1.620819 AGAGAGCGCTCCAGAAGAAAA 59.379 47.619 32.94 0.00 42.30 2.29
5363 7455 2.037772 AGAGAGCGCTCCAGAAGAAAAA 59.962 45.455 32.94 0.00 42.30 1.94
5364 7456 2.414825 GAGAGCGCTCCAGAAGAAAAAG 59.585 50.000 32.94 0.00 35.01 2.27
5365 7457 1.466558 GAGCGCTCCAGAAGAAAAAGG 59.533 52.381 27.22 0.00 0.00 3.11
5366 7458 1.072331 AGCGCTCCAGAAGAAAAAGGA 59.928 47.619 2.64 0.00 0.00 3.36
5367 7459 1.880027 GCGCTCCAGAAGAAAAAGGAA 59.120 47.619 0.00 0.00 0.00 3.36
5368 7460 2.293399 GCGCTCCAGAAGAAAAAGGAAA 59.707 45.455 0.00 0.00 0.00 3.13
5369 7461 3.057245 GCGCTCCAGAAGAAAAAGGAAAT 60.057 43.478 0.00 0.00 0.00 2.17
5370 7462 4.479619 CGCTCCAGAAGAAAAAGGAAATG 58.520 43.478 0.00 0.00 0.00 2.32
5371 7463 4.240888 GCTCCAGAAGAAAAAGGAAATGC 58.759 43.478 0.00 0.00 0.00 3.56
5372 7464 4.814147 CTCCAGAAGAAAAAGGAAATGCC 58.186 43.478 0.00 0.00 0.00 4.40
5373 7465 4.222336 TCCAGAAGAAAAAGGAAATGCCA 58.778 39.130 0.00 0.00 40.02 4.92
5374 7466 4.653341 TCCAGAAGAAAAAGGAAATGCCAA 59.347 37.500 0.00 0.00 40.02 4.52
5375 7467 4.992951 CCAGAAGAAAAAGGAAATGCCAAG 59.007 41.667 0.00 0.00 40.02 3.61
5376 7468 5.221501 CCAGAAGAAAAAGGAAATGCCAAGA 60.222 40.000 0.00 0.00 40.02 3.02
5377 7469 5.924825 CAGAAGAAAAAGGAAATGCCAAGAG 59.075 40.000 0.00 0.00 40.02 2.85
5378 7470 4.263018 AGAAAAAGGAAATGCCAAGAGC 57.737 40.909 0.00 0.00 44.14 4.09
5390 7482 3.221964 GCCAAGAGCAAATTACACCTG 57.778 47.619 0.00 0.00 42.97 4.00
5391 7483 2.819608 GCCAAGAGCAAATTACACCTGA 59.180 45.455 0.00 0.00 42.97 3.86
5392 7484 3.366374 GCCAAGAGCAAATTACACCTGAC 60.366 47.826 0.00 0.00 42.97 3.51
5393 7485 3.820467 CCAAGAGCAAATTACACCTGACA 59.180 43.478 0.00 0.00 0.00 3.58
5394 7486 4.083110 CCAAGAGCAAATTACACCTGACAG 60.083 45.833 0.00 0.00 0.00 3.51
5395 7487 4.357918 AGAGCAAATTACACCTGACAGT 57.642 40.909 0.93 0.00 0.00 3.55
5396 7488 4.067896 AGAGCAAATTACACCTGACAGTG 58.932 43.478 0.93 2.89 43.65 3.66
5397 7489 3.149196 AGCAAATTACACCTGACAGTGG 58.851 45.455 0.93 0.00 42.28 4.00
5398 7490 2.228822 GCAAATTACACCTGACAGTGGG 59.771 50.000 0.93 0.00 42.28 4.61
5399 7491 3.750371 CAAATTACACCTGACAGTGGGA 58.250 45.455 0.93 0.00 42.28 4.37
5400 7492 4.141287 CAAATTACACCTGACAGTGGGAA 58.859 43.478 0.93 0.00 42.28 3.97
5401 7493 3.703001 ATTACACCTGACAGTGGGAAG 57.297 47.619 0.93 0.00 42.28 3.46
5402 7494 2.391926 TACACCTGACAGTGGGAAGA 57.608 50.000 0.93 0.00 42.28 2.87
5403 7495 1.507140 ACACCTGACAGTGGGAAGAA 58.493 50.000 0.93 0.00 42.28 2.52
5404 7496 1.843851 ACACCTGACAGTGGGAAGAAA 59.156 47.619 0.93 0.00 42.28 2.52
5405 7497 2.241176 ACACCTGACAGTGGGAAGAAAA 59.759 45.455 0.93 0.00 42.28 2.29
5406 7498 3.287222 CACCTGACAGTGGGAAGAAAAA 58.713 45.455 0.93 0.00 33.95 1.94
5407 7499 3.316308 CACCTGACAGTGGGAAGAAAAAG 59.684 47.826 0.93 0.00 33.95 2.27
5408 7500 2.887152 CCTGACAGTGGGAAGAAAAAGG 59.113 50.000 0.93 0.00 0.00 3.11
5409 7501 3.435026 CCTGACAGTGGGAAGAAAAAGGA 60.435 47.826 0.93 0.00 0.00 3.36
5410 7502 4.207165 CTGACAGTGGGAAGAAAAAGGAA 58.793 43.478 0.00 0.00 0.00 3.36
5411 7503 4.207165 TGACAGTGGGAAGAAAAAGGAAG 58.793 43.478 0.00 0.00 0.00 3.46
5412 7504 4.207955 GACAGTGGGAAGAAAAAGGAAGT 58.792 43.478 0.00 0.00 0.00 3.01
5413 7505 4.610333 ACAGTGGGAAGAAAAAGGAAGTT 58.390 39.130 0.00 0.00 0.00 2.66
5414 7506 4.645136 ACAGTGGGAAGAAAAAGGAAGTTC 59.355 41.667 0.00 0.00 0.00 3.01
5415 7507 4.889995 CAGTGGGAAGAAAAAGGAAGTTCT 59.110 41.667 2.25 0.00 35.59 3.01
5416 7508 6.062095 CAGTGGGAAGAAAAAGGAAGTTCTA 58.938 40.000 2.25 0.00 32.90 2.10
5417 7509 6.717084 CAGTGGGAAGAAAAAGGAAGTTCTAT 59.283 38.462 2.25 0.00 32.90 1.98
5418 7510 6.943146 AGTGGGAAGAAAAAGGAAGTTCTATC 59.057 38.462 2.25 0.00 32.90 2.08
5419 7511 6.715264 GTGGGAAGAAAAAGGAAGTTCTATCA 59.285 38.462 2.25 0.00 32.90 2.15
5420 7512 7.230712 GTGGGAAGAAAAAGGAAGTTCTATCAA 59.769 37.037 2.25 0.00 32.90 2.57
5421 7513 7.230712 TGGGAAGAAAAAGGAAGTTCTATCAAC 59.769 37.037 2.25 0.00 32.90 3.18
5422 7514 7.309255 GGGAAGAAAAAGGAAGTTCTATCAACC 60.309 40.741 2.25 0.00 32.90 3.77
5423 7515 6.803154 AGAAAAAGGAAGTTCTATCAACCG 57.197 37.500 2.25 0.00 32.29 4.44
5424 7516 5.705905 AGAAAAAGGAAGTTCTATCAACCGG 59.294 40.000 0.00 0.00 32.29 5.28
5425 7517 4.903045 AAAGGAAGTTCTATCAACCGGA 57.097 40.909 9.46 0.00 0.00 5.14
5426 7518 4.473477 AAGGAAGTTCTATCAACCGGAG 57.527 45.455 9.46 0.00 0.00 4.63
5427 7519 3.442076 AGGAAGTTCTATCAACCGGAGT 58.558 45.455 9.46 0.00 0.00 3.85
5428 7520 3.447944 AGGAAGTTCTATCAACCGGAGTC 59.552 47.826 9.46 0.00 0.00 3.36
5429 7521 3.436496 GAAGTTCTATCAACCGGAGTCG 58.564 50.000 9.46 0.00 0.00 4.18
5430 7522 2.719739 AGTTCTATCAACCGGAGTCGA 58.280 47.619 9.46 0.00 39.00 4.20
5431 7523 3.288964 AGTTCTATCAACCGGAGTCGAT 58.711 45.455 9.46 6.68 39.00 3.59
5432 7524 3.700038 AGTTCTATCAACCGGAGTCGATT 59.300 43.478 9.46 0.00 39.00 3.34
5433 7525 4.885907 AGTTCTATCAACCGGAGTCGATTA 59.114 41.667 9.46 0.00 39.00 1.75
5434 7526 5.008811 AGTTCTATCAACCGGAGTCGATTAG 59.991 44.000 9.46 0.00 39.00 1.73
5435 7527 4.458397 TCTATCAACCGGAGTCGATTAGT 58.542 43.478 9.46 0.00 39.00 2.24
5436 7528 4.885907 TCTATCAACCGGAGTCGATTAGTT 59.114 41.667 9.46 0.00 39.00 2.24
5437 7529 3.947910 TCAACCGGAGTCGATTAGTTT 57.052 42.857 9.46 0.00 39.00 2.66
5438 7530 5.587388 ATCAACCGGAGTCGATTAGTTTA 57.413 39.130 9.46 0.00 39.00 2.01
5439 7531 4.737054 TCAACCGGAGTCGATTAGTTTAC 58.263 43.478 9.46 0.00 39.00 2.01
5440 7532 4.460382 TCAACCGGAGTCGATTAGTTTACT 59.540 41.667 9.46 0.00 39.00 2.24
5441 7533 5.047802 TCAACCGGAGTCGATTAGTTTACTT 60.048 40.000 9.46 0.00 39.00 2.24
5442 7534 4.741342 ACCGGAGTCGATTAGTTTACTTG 58.259 43.478 9.46 0.00 39.00 3.16
5443 7535 4.460382 ACCGGAGTCGATTAGTTTACTTGA 59.540 41.667 9.46 0.00 39.00 3.02
5444 7536 5.047802 ACCGGAGTCGATTAGTTTACTTGAA 60.048 40.000 9.46 0.00 39.00 2.69
5445 7537 5.515626 CCGGAGTCGATTAGTTTACTTGAAG 59.484 44.000 0.00 0.00 39.00 3.02
5446 7538 5.004535 CGGAGTCGATTAGTTTACTTGAAGC 59.995 44.000 0.00 0.00 39.00 3.86
5447 7539 6.100668 GGAGTCGATTAGTTTACTTGAAGCT 58.899 40.000 0.00 0.00 32.64 3.74
5448 7540 6.253942 GGAGTCGATTAGTTTACTTGAAGCTC 59.746 42.308 0.00 0.00 30.25 4.09
5449 7541 6.100668 AGTCGATTAGTTTACTTGAAGCTCC 58.899 40.000 0.00 0.00 30.25 4.70
5450 7542 5.291371 GTCGATTAGTTTACTTGAAGCTCCC 59.709 44.000 0.00 0.00 30.25 4.30
5451 7543 4.267928 CGATTAGTTTACTTGAAGCTCCCG 59.732 45.833 0.00 0.00 30.25 5.14
5452 7544 1.809684 AGTTTACTTGAAGCTCCCGC 58.190 50.000 0.00 0.00 0.00 6.13
5453 7545 0.442699 GTTTACTTGAAGCTCCCGCG 59.557 55.000 0.00 0.00 42.32 6.46
5454 7546 0.319083 TTTACTTGAAGCTCCCGCGA 59.681 50.000 8.23 0.00 42.32 5.87
5455 7547 0.108804 TTACTTGAAGCTCCCGCGAG 60.109 55.000 8.23 0.00 42.32 5.03
5510 7602 3.039526 CCCCCTCCTCCTCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
5511 7603 2.612251 CCCCTCCTCCTCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
5512 7604 2.612251 CCCTCCTCCTCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
5513 7605 2.018086 CCCTCCTCCTCTCCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
5514 7606 1.541672 CCTCCTCCTCTCCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
5515 7607 1.541672 CTCCTCCTCTCCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
5516 7608 2.015726 TCCTCCTCTCCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
5517 7609 2.018086 CCTCCTCTCCCTCCTCCCT 61.018 68.421 0.00 0.00 0.00 4.20
5518 7610 1.541672 CTCCTCTCCCTCCTCCCTC 59.458 68.421 0.00 0.00 0.00 4.30
5519 7611 2.197324 CCTCTCCCTCCTCCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
5520 7612 2.520741 CTCTCCCTCCTCCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
5521 7613 4.144727 TCTCCCTCCTCCCTCGCC 62.145 72.222 0.00 0.00 0.00 5.54
5552 7644 3.793144 GCGAGCGGGCAAAGTCAG 61.793 66.667 0.00 0.00 0.00 3.51
5553 7645 3.793144 CGAGCGGGCAAAGTCAGC 61.793 66.667 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.105269 GCTAGAGGTGCTCTTAGGTAACTTT 60.105 44.000 0.00 0.00 43.03 2.66
1 2 4.403113 GCTAGAGGTGCTCTTAGGTAACTT 59.597 45.833 0.00 0.00 43.03 2.66
2 3 3.955551 GCTAGAGGTGCTCTTAGGTAACT 59.044 47.826 0.00 0.00 45.72 2.24
3 4 3.700038 TGCTAGAGGTGCTCTTAGGTAAC 59.300 47.826 0.00 0.00 41.50 2.50
4 5 3.977312 TGCTAGAGGTGCTCTTAGGTAA 58.023 45.455 0.00 0.00 41.50 2.85
5 6 3.664551 TGCTAGAGGTGCTCTTAGGTA 57.335 47.619 0.00 0.00 41.50 3.08
6 7 2.534042 TGCTAGAGGTGCTCTTAGGT 57.466 50.000 0.00 0.00 41.50 3.08
7 8 3.526534 GTTTGCTAGAGGTGCTCTTAGG 58.473 50.000 0.00 0.00 41.50 2.69
8 9 3.526534 GGTTTGCTAGAGGTGCTCTTAG 58.473 50.000 0.00 0.00 41.50 2.18
9 10 2.236395 GGGTTTGCTAGAGGTGCTCTTA 59.764 50.000 0.00 0.00 41.50 2.10
10 11 1.003696 GGGTTTGCTAGAGGTGCTCTT 59.996 52.381 0.00 0.00 41.50 2.85
11 12 0.615850 GGGTTTGCTAGAGGTGCTCT 59.384 55.000 0.00 0.00 43.83 4.09
12 13 0.393132 GGGGTTTGCTAGAGGTGCTC 60.393 60.000 0.00 0.00 0.00 4.26
13 14 0.842467 AGGGGTTTGCTAGAGGTGCT 60.842 55.000 0.00 0.00 0.00 4.40
14 15 0.038310 AAGGGGTTTGCTAGAGGTGC 59.962 55.000 0.00 0.00 0.00 5.01
15 16 3.933861 ATAAGGGGTTTGCTAGAGGTG 57.066 47.619 0.00 0.00 0.00 4.00
16 17 4.202472 GCATATAAGGGGTTTGCTAGAGGT 60.202 45.833 0.00 0.00 0.00 3.85
17 18 4.042187 AGCATATAAGGGGTTTGCTAGAGG 59.958 45.833 0.00 0.00 41.58 3.69
18 19 5.234466 AGCATATAAGGGGTTTGCTAGAG 57.766 43.478 0.00 0.00 41.58 2.43
19 20 5.646692 AAGCATATAAGGGGTTTGCTAGA 57.353 39.130 0.00 0.00 42.50 2.43
20 21 6.715347 AAAAGCATATAAGGGGTTTGCTAG 57.285 37.500 0.00 0.00 42.50 3.42
21 22 7.837187 ACTTAAAAGCATATAAGGGGTTTGCTA 59.163 33.333 0.00 0.00 42.50 3.49
22 23 6.667848 ACTTAAAAGCATATAAGGGGTTTGCT 59.332 34.615 7.16 0.00 45.06 3.91
23 24 6.873997 ACTTAAAAGCATATAAGGGGTTTGC 58.126 36.000 7.16 0.00 35.17 3.68
24 25 7.193595 CGACTTAAAAGCATATAAGGGGTTTG 58.806 38.462 7.16 0.00 35.17 2.93
25 26 6.320418 CCGACTTAAAAGCATATAAGGGGTTT 59.680 38.462 7.16 0.00 36.38 3.27
26 27 5.826208 CCGACTTAAAAGCATATAAGGGGTT 59.174 40.000 7.16 0.00 34.21 4.11
27 28 5.374071 CCGACTTAAAAGCATATAAGGGGT 58.626 41.667 7.16 0.00 34.21 4.95
28 29 4.760204 CCCGACTTAAAAGCATATAAGGGG 59.240 45.833 7.16 5.41 34.21 4.79
29 30 5.617252 TCCCGACTTAAAAGCATATAAGGG 58.383 41.667 7.16 0.00 34.21 3.95
30 31 7.497909 TCTTTCCCGACTTAAAAGCATATAAGG 59.502 37.037 7.16 0.00 34.21 2.69
31 32 8.433421 TCTTTCCCGACTTAAAAGCATATAAG 57.567 34.615 0.00 0.00 35.67 1.73
32 33 8.671028 GTTCTTTCCCGACTTAAAAGCATATAA 58.329 33.333 0.00 0.00 31.55 0.98
33 34 7.825270 TGTTCTTTCCCGACTTAAAAGCATATA 59.175 33.333 0.00 0.00 31.55 0.86
34 35 6.657541 TGTTCTTTCCCGACTTAAAAGCATAT 59.342 34.615 0.00 0.00 31.55 1.78
35 36 5.998981 TGTTCTTTCCCGACTTAAAAGCATA 59.001 36.000 0.00 0.00 31.55 3.14
36 37 4.825085 TGTTCTTTCCCGACTTAAAAGCAT 59.175 37.500 0.00 0.00 31.55 3.79
37 38 4.035909 GTGTTCTTTCCCGACTTAAAAGCA 59.964 41.667 0.00 0.00 31.55 3.91
38 39 4.035909 TGTGTTCTTTCCCGACTTAAAAGC 59.964 41.667 0.00 0.00 31.55 3.51
39 40 5.744666 TGTGTTCTTTCCCGACTTAAAAG 57.255 39.130 0.00 0.00 0.00 2.27
40 41 5.239963 GGATGTGTTCTTTCCCGACTTAAAA 59.760 40.000 0.00 0.00 0.00 1.52
41 42 4.758165 GGATGTGTTCTTTCCCGACTTAAA 59.242 41.667 0.00 0.00 0.00 1.52
42 43 4.202377 TGGATGTGTTCTTTCCCGACTTAA 60.202 41.667 0.00 0.00 0.00 1.85
43 44 3.325425 TGGATGTGTTCTTTCCCGACTTA 59.675 43.478 0.00 0.00 0.00 2.24
44 45 2.105821 TGGATGTGTTCTTTCCCGACTT 59.894 45.455 0.00 0.00 0.00 3.01
45 46 1.697432 TGGATGTGTTCTTTCCCGACT 59.303 47.619 0.00 0.00 0.00 4.18
46 47 1.804748 GTGGATGTGTTCTTTCCCGAC 59.195 52.381 0.00 0.00 0.00 4.79
47 48 1.418264 TGTGGATGTGTTCTTTCCCGA 59.582 47.619 0.00 0.00 0.00 5.14
48 49 1.535462 GTGTGGATGTGTTCTTTCCCG 59.465 52.381 0.00 0.00 0.00 5.14
49 50 2.293399 GTGTGTGGATGTGTTCTTTCCC 59.707 50.000 0.00 0.00 0.00 3.97
50 51 2.948979 TGTGTGTGGATGTGTTCTTTCC 59.051 45.455 0.00 0.00 0.00 3.13
51 52 4.630894 TTGTGTGTGGATGTGTTCTTTC 57.369 40.909 0.00 0.00 0.00 2.62
52 53 5.398603 TTTTGTGTGTGGATGTGTTCTTT 57.601 34.783 0.00 0.00 0.00 2.52
53 54 5.596836 ATTTTGTGTGTGGATGTGTTCTT 57.403 34.783 0.00 0.00 0.00 2.52
54 55 5.596836 AATTTTGTGTGTGGATGTGTTCT 57.403 34.783 0.00 0.00 0.00 3.01
55 56 7.945033 ATAAATTTTGTGTGTGGATGTGTTC 57.055 32.000 0.00 0.00 0.00 3.18
56 57 9.421806 CATATAAATTTTGTGTGTGGATGTGTT 57.578 29.630 0.00 0.00 0.00 3.32
57 58 7.545265 GCATATAAATTTTGTGTGTGGATGTGT 59.455 33.333 0.00 0.00 0.00 3.72
82 83 1.999735 TCGCTTTGTGTATGCACTAGC 59.000 47.619 22.19 22.19 45.44 3.42
83 84 3.062639 CCTTCGCTTTGTGTATGCACTAG 59.937 47.826 15.25 12.58 45.44 2.57
85 86 1.806542 CCTTCGCTTTGTGTATGCACT 59.193 47.619 15.25 0.00 45.44 4.40
86 87 1.804151 TCCTTCGCTTTGTGTATGCAC 59.196 47.619 7.03 7.03 45.44 4.57
87 88 2.076100 CTCCTTCGCTTTGTGTATGCA 58.924 47.619 0.00 0.00 0.00 3.96
88 89 2.346803 TCTCCTTCGCTTTGTGTATGC 58.653 47.619 0.00 0.00 0.00 3.14
101 108 6.334202 ACGAAATCATACTGAACTCTCCTTC 58.666 40.000 0.00 0.00 0.00 3.46
119 126 3.187700 GCTATTCCTGTCGTGACGAAAT 58.812 45.455 10.12 8.57 37.72 2.17
125 132 1.990799 CAACGCTATTCCTGTCGTGA 58.009 50.000 0.00 0.00 35.19 4.35
126 133 0.370273 GCAACGCTATTCCTGTCGTG 59.630 55.000 0.00 0.00 35.19 4.35
127 134 0.037697 TGCAACGCTATTCCTGTCGT 60.038 50.000 0.00 0.00 36.67 4.34
151 158 9.339492 GAATAATTAGCTGCTCAAAATATGCTC 57.661 33.333 4.91 0.00 32.72 4.26
152 159 8.853126 TGAATAATTAGCTGCTCAAAATATGCT 58.147 29.630 4.91 0.00 34.92 3.79
181 189 1.512310 GCGGAGAGTCGTTGTCTCG 60.512 63.158 5.69 0.00 41.32 4.04
272 309 1.154672 CGACCACATCAAACGCGTG 60.155 57.895 14.98 0.00 0.00 5.34
273 310 2.950172 GCGACCACATCAAACGCGT 61.950 57.895 5.58 5.58 39.90 6.01
274 311 2.202171 GCGACCACATCAAACGCG 60.202 61.111 3.53 3.53 39.90 6.01
275 312 0.521242 GATGCGACCACATCAAACGC 60.521 55.000 0.00 0.00 44.81 4.84
276 313 3.586039 GATGCGACCACATCAAACG 57.414 52.632 0.00 0.00 44.81 3.60
414 451 2.879026 GAGGGACTTATCAAATTCGCCC 59.121 50.000 0.00 0.00 41.55 6.13
415 452 3.809905 AGAGGGACTTATCAAATTCGCC 58.190 45.455 0.00 0.00 41.55 5.54
422 459 6.601332 ACAAAAGTTGAGAGGGACTTATCAA 58.399 36.000 0.00 0.00 41.55 2.57
504 542 3.060674 CAGCGAGATTTCAGATGCTAACG 60.061 47.826 0.00 0.00 0.00 3.18
535 574 1.720852 GCAACCATGCGCACTAAAAAG 59.279 47.619 14.90 0.33 43.83 2.27
581 621 4.691216 AGTATTCAGCCTTGTCGTTTCTTC 59.309 41.667 0.00 0.00 0.00 2.87
713 805 9.778741 AGTTGCTGCTATAATATGCTACTTTAA 57.221 29.630 0.00 0.00 36.63 1.52
714 806 9.208022 CAGTTGCTGCTATAATATGCTACTTTA 57.792 33.333 0.00 0.00 37.55 1.85
715 807 7.716998 ACAGTTGCTGCTATAATATGCTACTTT 59.283 33.333 0.00 0.00 37.55 2.66
716 808 7.172190 CACAGTTGCTGCTATAATATGCTACTT 59.828 37.037 0.00 0.00 37.55 2.24
717 809 6.648310 CACAGTTGCTGCTATAATATGCTACT 59.352 38.462 0.00 0.00 39.44 2.57
718 810 6.425114 ACACAGTTGCTGCTATAATATGCTAC 59.575 38.462 0.00 0.00 34.37 3.58
719 811 6.424812 CACACAGTTGCTGCTATAATATGCTA 59.575 38.462 0.00 0.00 34.37 3.49
720 812 5.237996 CACACAGTTGCTGCTATAATATGCT 59.762 40.000 0.00 0.00 34.37 3.79
721 813 5.237127 TCACACAGTTGCTGCTATAATATGC 59.763 40.000 0.00 0.00 34.37 3.14
722 814 6.849588 TCACACAGTTGCTGCTATAATATG 57.150 37.500 0.00 0.00 34.37 1.78
723 815 6.994496 ACATCACACAGTTGCTGCTATAATAT 59.006 34.615 0.00 0.00 34.37 1.28
724 816 6.258507 CACATCACACAGTTGCTGCTATAATA 59.741 38.462 0.00 0.00 34.37 0.98
725 817 5.065602 CACATCACACAGTTGCTGCTATAAT 59.934 40.000 0.00 0.00 34.37 1.28
726 818 4.392754 CACATCACACAGTTGCTGCTATAA 59.607 41.667 0.00 0.00 34.37 0.98
727 819 3.934579 CACATCACACAGTTGCTGCTATA 59.065 43.478 0.00 0.00 34.37 1.31
728 820 2.745821 CACATCACACAGTTGCTGCTAT 59.254 45.455 0.00 0.00 34.37 2.97
729 821 2.145536 CACATCACACAGTTGCTGCTA 58.854 47.619 0.00 0.00 34.37 3.49
730 822 0.949397 CACATCACACAGTTGCTGCT 59.051 50.000 0.00 0.00 34.37 4.24
731 823 0.946528 TCACATCACACAGTTGCTGC 59.053 50.000 0.00 0.00 34.37 5.25
732 824 2.809696 TCATCACATCACACAGTTGCTG 59.190 45.455 0.00 0.00 37.52 4.41
733 825 3.130280 TCATCACATCACACAGTTGCT 57.870 42.857 0.00 0.00 0.00 3.91
734 826 4.633126 AGTATCATCACATCACACAGTTGC 59.367 41.667 0.00 0.00 0.00 4.17
735 827 7.832503 TTAGTATCATCACATCACACAGTTG 57.167 36.000 0.00 0.00 0.00 3.16
736 828 9.453572 AATTTAGTATCATCACATCACACAGTT 57.546 29.630 0.00 0.00 0.00 3.16
758 850 9.905713 TCTGCAACTAGATGGACTAATTAATTT 57.094 29.630 5.91 0.00 0.00 1.82
759 851 9.905713 TTCTGCAACTAGATGGACTAATTAATT 57.094 29.630 5.89 5.89 0.00 1.40
761 853 9.905713 AATTCTGCAACTAGATGGACTAATTAA 57.094 29.630 0.00 0.00 0.00 1.40
763 855 9.905713 TTAATTCTGCAACTAGATGGACTAATT 57.094 29.630 0.00 6.10 0.00 1.40
764 856 9.331282 GTTAATTCTGCAACTAGATGGACTAAT 57.669 33.333 0.00 0.00 0.00 1.73
765 857 8.540388 AGTTAATTCTGCAACTAGATGGACTAA 58.460 33.333 0.00 0.00 33.29 2.24
766 858 8.079211 AGTTAATTCTGCAACTAGATGGACTA 57.921 34.615 0.00 0.00 33.29 2.59
767 859 6.951971 AGTTAATTCTGCAACTAGATGGACT 58.048 36.000 0.00 0.00 33.29 3.85
768 860 8.718102 TTAGTTAATTCTGCAACTAGATGGAC 57.282 34.615 0.00 0.00 38.22 4.02
769 861 9.905713 AATTAGTTAATTCTGCAACTAGATGGA 57.094 29.630 0.00 0.00 38.22 3.41
770 862 9.941664 CAATTAGTTAATTCTGCAACTAGATGG 57.058 33.333 0.00 0.00 38.22 3.51
779 871 9.638239 GGTTCAAATCAATTAGTTAATTCTGCA 57.362 29.630 0.00 0.00 33.88 4.41
780 872 9.638239 TGGTTCAAATCAATTAGTTAATTCTGC 57.362 29.630 0.00 0.00 33.88 4.26
783 875 9.087424 GCCTGGTTCAAATCAATTAGTTAATTC 57.913 33.333 0.00 0.00 33.88 2.17
784 876 8.815912 AGCCTGGTTCAAATCAATTAGTTAATT 58.184 29.630 0.00 0.00 36.39 1.40
785 877 8.366359 AGCCTGGTTCAAATCAATTAGTTAAT 57.634 30.769 0.00 0.00 0.00 1.40
786 878 7.775053 AGCCTGGTTCAAATCAATTAGTTAA 57.225 32.000 0.00 0.00 0.00 2.01
787 879 8.871629 TTAGCCTGGTTCAAATCAATTAGTTA 57.128 30.769 0.00 0.00 0.00 2.24
788 880 7.775053 TTAGCCTGGTTCAAATCAATTAGTT 57.225 32.000 0.00 0.00 0.00 2.24
789 881 7.961326 ATTAGCCTGGTTCAAATCAATTAGT 57.039 32.000 0.00 0.00 0.00 2.24
802 894 8.251026 GCTTGTTTATCTTTAATTAGCCTGGTT 58.749 33.333 0.00 0.00 0.00 3.67
937 1031 0.606401 ACAAGTTGGATGCGAGGTGG 60.606 55.000 7.96 0.00 0.00 4.61
1023 1117 1.944024 ACGGCATTTTCTTTCGTGTCA 59.056 42.857 0.00 0.00 32.60 3.58
1176 1285 2.989480 CTCTGGGAGAGGCTTCACT 58.011 57.895 0.00 0.00 38.67 3.41
1212 1322 2.224233 GCCAGAGCAAGCTGATGATAGA 60.224 50.000 0.00 0.00 38.14 1.98
1302 1412 4.682860 GTGAGCAGGTCATGAAATTTTGTG 59.317 41.667 5.40 0.00 37.56 3.33
1360 1470 1.071605 GAAGCTTTCTGCATCGACGT 58.928 50.000 0.00 0.00 45.94 4.34
1400 1510 1.532868 CAGAAAGTGAAGGCAGGTTCG 59.467 52.381 0.00 0.00 0.00 3.95
1414 1524 2.547211 CCAGAAGTGACACAGCAGAAAG 59.453 50.000 8.59 0.00 0.00 2.62
1497 1609 1.205655 TCAGCACTCCTCAAGAATCCG 59.794 52.381 0.00 0.00 0.00 4.18
1539 1651 1.358725 TACGCGCAAACAGGAGATGC 61.359 55.000 5.73 0.00 36.74 3.91
1638 1750 6.093771 TGTTAAGACCTGTATTCTCGTCTCTC 59.906 42.308 0.00 0.00 34.53 3.20
1657 1769 5.476091 AGGAGTTCCTTCACTCTGTTAAG 57.524 43.478 0.00 0.00 46.09 1.85
1683 1795 5.415701 TGTCTCCTTATGGCTGTTTTCAATC 59.584 40.000 0.00 0.00 0.00 2.67
1697 1809 4.160642 TGATGCAATGCTGTCTCCTTAT 57.839 40.909 6.82 0.00 0.00 1.73
1771 1889 0.250727 TCTTTCGGGAAACTGGCCAG 60.251 55.000 31.60 31.60 37.31 4.85
1822 1940 4.984295 TCAACAATGATGTCCTCTTCCAA 58.016 39.130 0.00 0.00 39.40 3.53
1905 2023 2.751436 AGAACCGCCGCATGCAAT 60.751 55.556 19.57 0.00 41.33 3.56
1975 2094 7.812191 GGAAAATATGTGCAGACAATTGTAACA 59.188 33.333 11.95 13.60 35.11 2.41
1977 2096 7.890515 TGGAAAATATGTGCAGACAATTGTAA 58.109 30.769 11.95 0.00 35.11 2.41
2089 2210 2.391616 TCGATGCTTGATGCTTCAGT 57.608 45.000 2.23 0.00 43.50 3.41
2106 2227 4.060900 AGGCATATGCTAGATGTTGTTCG 58.939 43.478 26.12 0.00 41.70 3.95
2158 2281 3.435671 GGATCAAACTTTCCCGTACACAG 59.564 47.826 0.00 0.00 0.00 3.66
2180 2303 7.875041 CAGTACTTGTTATCTCAGGGGATTATG 59.125 40.741 0.00 0.00 0.00 1.90
2201 2324 5.705905 ACCTAAAGACCATTTTGAGCAGTAC 59.294 40.000 0.00 0.00 0.00 2.73
2250 2425 4.320494 GGTGGAATGCACTAGTGAAAGTTG 60.320 45.833 27.08 0.00 0.00 3.16
2423 2609 4.212143 AGCAGAGCATACAAGAACATCA 57.788 40.909 0.00 0.00 0.00 3.07
2466 2757 4.636206 CAGTAATTCTTACAAGGCCAGACC 59.364 45.833 5.01 0.00 38.60 3.85
2523 2814 3.270877 CTGTGGCTTGGTACATACCTTC 58.729 50.000 9.46 0.00 46.58 3.46
2596 2889 9.077885 GGAGAATTATAAAATACATTGGGAGCA 57.922 33.333 0.00 0.00 0.00 4.26
2843 3368 7.156673 GTCTGTAAAACTTACAGGTGTCCATA 58.843 38.462 20.79 2.72 43.67 2.74
2844 3369 5.995897 GTCTGTAAAACTTACAGGTGTCCAT 59.004 40.000 20.79 0.00 43.67 3.41
2845 3370 5.104859 TGTCTGTAAAACTTACAGGTGTCCA 60.105 40.000 20.79 10.80 43.67 4.02
3181 5223 5.928976 TGTTCATCAAGGAAGAGAAGAACA 58.071 37.500 8.56 8.56 40.98 3.18
3819 5871 2.288395 GCCAAACCACACAAATCTCCAG 60.288 50.000 0.00 0.00 0.00 3.86
4105 6157 2.030274 GTGTTGGTGTGCCTCCATTAAC 60.030 50.000 0.00 0.00 34.75 2.01
4263 6315 1.471287 GACCCAAAATACAAGGCCGTC 59.529 52.381 0.00 0.00 0.00 4.79
4264 6316 1.202952 TGACCCAAAATACAAGGCCGT 60.203 47.619 0.00 0.00 0.00 5.68
4362 6414 3.126831 GCTAATGACGCAGATAGCAACT 58.873 45.455 15.70 0.00 46.13 3.16
4390 6442 8.761575 AAGTCCATTTGTTTGCATATAACAAG 57.238 30.769 13.32 5.41 43.85 3.16
4451 6503 2.029828 CGAGCTAGCCCAATTCGAGTAT 60.030 50.000 15.92 0.00 33.38 2.12
4468 6520 2.667473 ACCATTACCAGTGTACGAGC 57.333 50.000 0.00 0.00 0.00 5.03
4620 6686 4.276926 GGAAGAAGTTCTGTGTTTGATGCT 59.723 41.667 6.06 0.00 32.72 3.79
4639 6705 4.002982 TCCATGAAAACATCTCACGGAAG 58.997 43.478 0.00 0.00 32.45 3.46
4744 6812 4.914312 AACGGTACATCACAACATAACG 57.086 40.909 0.00 0.00 33.96 3.18
4870 6940 8.665643 TCCTACATTAACCATTTTACATACCG 57.334 34.615 0.00 0.00 0.00 4.02
4955 7030 2.939103 GCAAGTATCAAGGCACTAGTGG 59.061 50.000 23.95 7.71 38.49 4.00
4977 7052 3.090037 ACGCAGAGTACTAACACCAGAT 58.910 45.455 0.00 0.00 0.00 2.90
4997 7074 7.116233 CCAACAACAAATCATTAAGGTAGCAAC 59.884 37.037 0.00 0.00 0.00 4.17
5061 7152 6.095377 GGATTGACAACATTGGACATTCTTC 58.905 40.000 0.00 0.00 0.00 2.87
5062 7153 5.335897 CGGATTGACAACATTGGACATTCTT 60.336 40.000 0.00 0.00 0.00 2.52
5164 7256 5.949354 ACTTAAGCATGTTAATTGCCCACTA 59.051 36.000 1.29 0.00 41.06 2.74
5191 7283 4.261801 ACCAAAACAATCCTATCCTGACG 58.738 43.478 0.00 0.00 0.00 4.35
5205 7297 8.492673 TTGCAATTACAACATTTACCAAAACA 57.507 26.923 0.00 0.00 0.00 2.83
5206 7298 8.608317 ACTTGCAATTACAACATTTACCAAAAC 58.392 29.630 0.00 0.00 0.00 2.43
5285 7377 5.076873 AGAGGGCAGTATAACTTGCAAAAA 58.923 37.500 0.00 0.00 0.00 1.94
5286 7378 4.662278 AGAGGGCAGTATAACTTGCAAAA 58.338 39.130 0.00 0.00 0.00 2.44
5287 7379 4.301072 AGAGGGCAGTATAACTTGCAAA 57.699 40.909 0.00 0.00 0.00 3.68
5288 7380 4.301072 AAGAGGGCAGTATAACTTGCAA 57.699 40.909 0.00 0.00 0.00 4.08
5289 7381 5.429681 TTAAGAGGGCAGTATAACTTGCA 57.570 39.130 7.25 0.00 0.00 4.08
5290 7382 6.753107 TTTTAAGAGGGCAGTATAACTTGC 57.247 37.500 0.00 0.00 0.00 4.01
5291 7383 8.237267 CACTTTTTAAGAGGGCAGTATAACTTG 58.763 37.037 0.00 0.00 0.00 3.16
5292 7384 8.161425 TCACTTTTTAAGAGGGCAGTATAACTT 58.839 33.333 0.00 0.00 0.00 2.66
5293 7385 7.686434 TCACTTTTTAAGAGGGCAGTATAACT 58.314 34.615 0.00 0.00 0.00 2.24
5294 7386 7.065923 CCTCACTTTTTAAGAGGGCAGTATAAC 59.934 40.741 0.00 0.00 44.10 1.89
5295 7387 7.110155 CCTCACTTTTTAAGAGGGCAGTATAA 58.890 38.462 0.00 0.00 44.10 0.98
5296 7388 6.650120 CCTCACTTTTTAAGAGGGCAGTATA 58.350 40.000 0.00 0.00 44.10 1.47
5297 7389 5.501156 CCTCACTTTTTAAGAGGGCAGTAT 58.499 41.667 0.00 0.00 44.10 2.12
5298 7390 4.906618 CCTCACTTTTTAAGAGGGCAGTA 58.093 43.478 0.00 0.00 44.10 2.74
5299 7391 3.756117 CCTCACTTTTTAAGAGGGCAGT 58.244 45.455 0.00 0.00 44.10 4.40
5305 7397 5.221742 ACCCTCTGACCTCACTTTTTAAGAG 60.222 44.000 0.00 0.00 0.00 2.85
5306 7398 4.658901 ACCCTCTGACCTCACTTTTTAAGA 59.341 41.667 0.00 0.00 0.00 2.10
5307 7399 4.974399 ACCCTCTGACCTCACTTTTTAAG 58.026 43.478 0.00 0.00 0.00 1.85
5308 7400 6.503560 TTACCCTCTGACCTCACTTTTTAA 57.496 37.500 0.00 0.00 0.00 1.52
5309 7401 6.293698 GTTTACCCTCTGACCTCACTTTTTA 58.706 40.000 0.00 0.00 0.00 1.52
5310 7402 5.131067 GTTTACCCTCTGACCTCACTTTTT 58.869 41.667 0.00 0.00 0.00 1.94
5311 7403 4.715713 GTTTACCCTCTGACCTCACTTTT 58.284 43.478 0.00 0.00 0.00 2.27
5312 7404 3.244112 CGTTTACCCTCTGACCTCACTTT 60.244 47.826 0.00 0.00 0.00 2.66
5313 7405 2.299297 CGTTTACCCTCTGACCTCACTT 59.701 50.000 0.00 0.00 0.00 3.16
5314 7406 1.893801 CGTTTACCCTCTGACCTCACT 59.106 52.381 0.00 0.00 0.00 3.41
5315 7407 1.891150 TCGTTTACCCTCTGACCTCAC 59.109 52.381 0.00 0.00 0.00 3.51
5316 7408 2.297698 TCGTTTACCCTCTGACCTCA 57.702 50.000 0.00 0.00 0.00 3.86
5317 7409 2.561858 ACTTCGTTTACCCTCTGACCTC 59.438 50.000 0.00 0.00 0.00 3.85
5318 7410 2.299297 CACTTCGTTTACCCTCTGACCT 59.701 50.000 0.00 0.00 0.00 3.85
5319 7411 2.298163 TCACTTCGTTTACCCTCTGACC 59.702 50.000 0.00 0.00 0.00 4.02
5320 7412 3.655276 TCACTTCGTTTACCCTCTGAC 57.345 47.619 0.00 0.00 0.00 3.51
5321 7413 4.342951 TCTTTCACTTCGTTTACCCTCTGA 59.657 41.667 0.00 0.00 0.00 3.27
5322 7414 4.628074 TCTTTCACTTCGTTTACCCTCTG 58.372 43.478 0.00 0.00 0.00 3.35
5323 7415 4.587684 TCTCTTTCACTTCGTTTACCCTCT 59.412 41.667 0.00 0.00 0.00 3.69
5324 7416 4.879598 TCTCTTTCACTTCGTTTACCCTC 58.120 43.478 0.00 0.00 0.00 4.30
5325 7417 4.799917 GCTCTCTTTCACTTCGTTTACCCT 60.800 45.833 0.00 0.00 0.00 4.34
5326 7418 3.432592 GCTCTCTTTCACTTCGTTTACCC 59.567 47.826 0.00 0.00 0.00 3.69
5327 7419 3.121445 CGCTCTCTTTCACTTCGTTTACC 59.879 47.826 0.00 0.00 0.00 2.85
5328 7420 3.421955 GCGCTCTCTTTCACTTCGTTTAC 60.422 47.826 0.00 0.00 0.00 2.01
5329 7421 2.729882 GCGCTCTCTTTCACTTCGTTTA 59.270 45.455 0.00 0.00 0.00 2.01
5330 7422 1.527311 GCGCTCTCTTTCACTTCGTTT 59.473 47.619 0.00 0.00 0.00 3.60
5331 7423 1.140816 GCGCTCTCTTTCACTTCGTT 58.859 50.000 0.00 0.00 0.00 3.85
5332 7424 0.315568 AGCGCTCTCTTTCACTTCGT 59.684 50.000 2.64 0.00 0.00 3.85
5333 7425 0.988439 GAGCGCTCTCTTTCACTTCG 59.012 55.000 29.88 0.00 36.42 3.79
5334 7426 1.337260 TGGAGCGCTCTCTTTCACTTC 60.337 52.381 34.46 15.66 39.31 3.01
5335 7427 0.681733 TGGAGCGCTCTCTTTCACTT 59.318 50.000 34.46 0.00 39.31 3.16
5336 7428 0.246086 CTGGAGCGCTCTCTTTCACT 59.754 55.000 34.46 0.00 39.31 3.41
5337 7429 0.244994 TCTGGAGCGCTCTCTTTCAC 59.755 55.000 34.46 17.81 39.31 3.18
5338 7430 0.969149 TTCTGGAGCGCTCTCTTTCA 59.031 50.000 34.46 22.58 39.31 2.69
5339 7431 1.203523 TCTTCTGGAGCGCTCTCTTTC 59.796 52.381 34.46 19.24 39.31 2.62
5340 7432 1.261480 TCTTCTGGAGCGCTCTCTTT 58.739 50.000 34.46 0.00 39.31 2.52
5341 7433 1.261480 TTCTTCTGGAGCGCTCTCTT 58.739 50.000 34.46 0.35 39.31 2.85
5342 7434 1.261480 TTTCTTCTGGAGCGCTCTCT 58.739 50.000 34.46 0.83 39.31 3.10
5343 7435 2.086054 TTTTCTTCTGGAGCGCTCTC 57.914 50.000 34.46 24.64 38.62 3.20
5344 7436 2.421619 CTTTTTCTTCTGGAGCGCTCT 58.578 47.619 34.46 2.23 0.00 4.09
5345 7437 1.466558 CCTTTTTCTTCTGGAGCGCTC 59.533 52.381 29.38 29.38 0.00 5.03
5346 7438 1.072331 TCCTTTTTCTTCTGGAGCGCT 59.928 47.619 11.27 11.27 0.00 5.92
5347 7439 1.523758 TCCTTTTTCTTCTGGAGCGC 58.476 50.000 0.00 0.00 0.00 5.92
5348 7440 4.479619 CATTTCCTTTTTCTTCTGGAGCG 58.520 43.478 0.00 0.00 0.00 5.03
5349 7441 4.240888 GCATTTCCTTTTTCTTCTGGAGC 58.759 43.478 0.00 0.00 0.00 4.70
5350 7442 4.281688 TGGCATTTCCTTTTTCTTCTGGAG 59.718 41.667 0.00 0.00 35.26 3.86
5351 7443 4.222336 TGGCATTTCCTTTTTCTTCTGGA 58.778 39.130 0.00 0.00 35.26 3.86
5352 7444 4.605640 TGGCATTTCCTTTTTCTTCTGG 57.394 40.909 0.00 0.00 35.26 3.86
5353 7445 5.846203 TCTTGGCATTTCCTTTTTCTTCTG 58.154 37.500 0.00 0.00 35.26 3.02
5354 7446 5.510349 GCTCTTGGCATTTCCTTTTTCTTCT 60.510 40.000 0.00 0.00 41.35 2.85
5355 7447 4.687948 GCTCTTGGCATTTCCTTTTTCTTC 59.312 41.667 0.00 0.00 41.35 2.87
5356 7448 4.635223 GCTCTTGGCATTTCCTTTTTCTT 58.365 39.130 0.00 0.00 41.35 2.52
5357 7449 4.263018 GCTCTTGGCATTTCCTTTTTCT 57.737 40.909 0.00 0.00 41.35 2.52
5370 7462 2.819608 TCAGGTGTAATTTGCTCTTGGC 59.180 45.455 0.00 0.00 42.22 4.52
5371 7463 3.820467 TGTCAGGTGTAATTTGCTCTTGG 59.180 43.478 0.00 0.00 0.00 3.61
5372 7464 4.516698 ACTGTCAGGTGTAATTTGCTCTTG 59.483 41.667 4.53 0.00 0.00 3.02
5373 7465 4.516698 CACTGTCAGGTGTAATTTGCTCTT 59.483 41.667 4.53 0.00 33.04 2.85
5374 7466 4.067896 CACTGTCAGGTGTAATTTGCTCT 58.932 43.478 4.53 0.00 33.04 4.09
5375 7467 3.189287 CCACTGTCAGGTGTAATTTGCTC 59.811 47.826 4.53 0.00 35.63 4.26
5376 7468 3.149196 CCACTGTCAGGTGTAATTTGCT 58.851 45.455 4.53 0.00 35.63 3.91
5377 7469 2.228822 CCCACTGTCAGGTGTAATTTGC 59.771 50.000 4.53 0.00 35.63 3.68
5378 7470 3.750371 TCCCACTGTCAGGTGTAATTTG 58.250 45.455 4.53 0.00 35.63 2.32
5379 7471 4.104102 TCTTCCCACTGTCAGGTGTAATTT 59.896 41.667 4.53 0.00 35.63 1.82
5380 7472 3.650942 TCTTCCCACTGTCAGGTGTAATT 59.349 43.478 4.53 0.00 35.63 1.40
5381 7473 3.248024 TCTTCCCACTGTCAGGTGTAAT 58.752 45.455 4.53 0.00 35.63 1.89
5382 7474 2.684943 TCTTCCCACTGTCAGGTGTAA 58.315 47.619 4.53 0.00 35.63 2.41
5383 7475 2.391926 TCTTCCCACTGTCAGGTGTA 57.608 50.000 4.53 0.00 35.63 2.90
5384 7476 1.507140 TTCTTCCCACTGTCAGGTGT 58.493 50.000 4.53 0.00 35.63 4.16
5385 7477 2.638480 TTTCTTCCCACTGTCAGGTG 57.362 50.000 4.53 0.47 37.00 4.00
5386 7478 3.555966 CTTTTTCTTCCCACTGTCAGGT 58.444 45.455 4.53 0.00 0.00 4.00
5387 7479 2.887152 CCTTTTTCTTCCCACTGTCAGG 59.113 50.000 4.53 0.00 0.00 3.86
5388 7480 3.820557 TCCTTTTTCTTCCCACTGTCAG 58.179 45.455 0.00 0.00 0.00 3.51
5389 7481 3.943671 TCCTTTTTCTTCCCACTGTCA 57.056 42.857 0.00 0.00 0.00 3.58
5390 7482 4.207955 ACTTCCTTTTTCTTCCCACTGTC 58.792 43.478 0.00 0.00 0.00 3.51
5391 7483 4.251103 ACTTCCTTTTTCTTCCCACTGT 57.749 40.909 0.00 0.00 0.00 3.55
5392 7484 4.889995 AGAACTTCCTTTTTCTTCCCACTG 59.110 41.667 0.00 0.00 0.00 3.66
5393 7485 5.130705 AGAACTTCCTTTTTCTTCCCACT 57.869 39.130 0.00 0.00 0.00 4.00
5394 7486 6.715264 TGATAGAACTTCCTTTTTCTTCCCAC 59.285 38.462 0.00 0.00 33.96 4.61
5395 7487 6.848069 TGATAGAACTTCCTTTTTCTTCCCA 58.152 36.000 0.00 0.00 33.96 4.37
5396 7488 7.309255 GGTTGATAGAACTTCCTTTTTCTTCCC 60.309 40.741 0.00 0.00 33.96 3.97
5397 7489 7.573283 CGGTTGATAGAACTTCCTTTTTCTTCC 60.573 40.741 0.00 0.00 33.96 3.46
5398 7490 7.298854 CGGTTGATAGAACTTCCTTTTTCTTC 58.701 38.462 0.00 0.00 33.96 2.87
5399 7491 6.206829 CCGGTTGATAGAACTTCCTTTTTCTT 59.793 38.462 0.00 0.00 33.96 2.52
5400 7492 5.705905 CCGGTTGATAGAACTTCCTTTTTCT 59.294 40.000 0.00 0.00 36.10 2.52
5401 7493 5.704053 TCCGGTTGATAGAACTTCCTTTTTC 59.296 40.000 0.00 0.00 0.00 2.29
5402 7494 5.627135 TCCGGTTGATAGAACTTCCTTTTT 58.373 37.500 0.00 0.00 0.00 1.94
5403 7495 5.221864 ACTCCGGTTGATAGAACTTCCTTTT 60.222 40.000 0.00 0.00 0.00 2.27
5404 7496 4.286291 ACTCCGGTTGATAGAACTTCCTTT 59.714 41.667 0.00 0.00 0.00 3.11
5405 7497 3.838903 ACTCCGGTTGATAGAACTTCCTT 59.161 43.478 0.00 0.00 0.00 3.36
5406 7498 3.442076 ACTCCGGTTGATAGAACTTCCT 58.558 45.455 0.00 0.00 0.00 3.36
5407 7499 3.734293 CGACTCCGGTTGATAGAACTTCC 60.734 52.174 0.00 0.00 0.00 3.46
5408 7500 3.128242 TCGACTCCGGTTGATAGAACTTC 59.872 47.826 0.00 0.00 36.24 3.01
5409 7501 3.087031 TCGACTCCGGTTGATAGAACTT 58.913 45.455 0.00 0.00 36.24 2.66
5410 7502 2.719739 TCGACTCCGGTTGATAGAACT 58.280 47.619 0.00 0.00 36.24 3.01
5411 7503 3.712091 ATCGACTCCGGTTGATAGAAC 57.288 47.619 0.00 0.00 42.85 3.01
5412 7504 4.885907 ACTAATCGACTCCGGTTGATAGAA 59.114 41.667 0.00 0.00 43.61 2.10
5413 7505 4.458397 ACTAATCGACTCCGGTTGATAGA 58.542 43.478 0.00 0.00 43.61 1.98
5414 7506 4.832590 ACTAATCGACTCCGGTTGATAG 57.167 45.455 0.00 0.00 43.61 2.08
5415 7507 5.587388 AAACTAATCGACTCCGGTTGATA 57.413 39.130 0.00 0.00 43.61 2.15
5416 7508 4.467198 AAACTAATCGACTCCGGTTGAT 57.533 40.909 0.00 0.00 45.62 2.57
5417 7509 3.947910 AAACTAATCGACTCCGGTTGA 57.052 42.857 0.00 0.00 39.76 3.18
5418 7510 4.741342 AGTAAACTAATCGACTCCGGTTG 58.259 43.478 0.00 0.00 39.76 3.77
5419 7511 5.047802 TCAAGTAAACTAATCGACTCCGGTT 60.048 40.000 0.00 0.00 42.48 4.44
5420 7512 4.460382 TCAAGTAAACTAATCGACTCCGGT 59.540 41.667 0.00 0.00 36.24 5.28
5421 7513 4.990257 TCAAGTAAACTAATCGACTCCGG 58.010 43.478 0.00 0.00 36.24 5.14
5422 7514 5.004535 GCTTCAAGTAAACTAATCGACTCCG 59.995 44.000 0.00 0.00 37.07 4.63
5423 7515 6.100668 AGCTTCAAGTAAACTAATCGACTCC 58.899 40.000 0.00 0.00 0.00 3.85
5424 7516 6.253942 GGAGCTTCAAGTAAACTAATCGACTC 59.746 42.308 0.00 0.00 0.00 3.36
5425 7517 6.100668 GGAGCTTCAAGTAAACTAATCGACT 58.899 40.000 0.00 0.00 0.00 4.18
5426 7518 5.291371 GGGAGCTTCAAGTAAACTAATCGAC 59.709 44.000 0.00 0.00 0.00 4.20
5427 7519 5.416947 GGGAGCTTCAAGTAAACTAATCGA 58.583 41.667 0.00 0.00 0.00 3.59
5428 7520 4.267928 CGGGAGCTTCAAGTAAACTAATCG 59.732 45.833 0.00 0.00 0.00 3.34
5429 7521 5.720261 CGGGAGCTTCAAGTAAACTAATC 57.280 43.478 0.00 0.00 0.00 1.75
5452 7544 4.116328 TTGCCTCTCGGACGCTCG 62.116 66.667 0.00 0.00 0.00 5.03
5453 7545 2.507324 GTTGCCTCTCGGACGCTC 60.507 66.667 0.00 0.00 0.00 5.03
5454 7546 4.070552 GGTTGCCTCTCGGACGCT 62.071 66.667 0.00 0.00 0.00 5.07
5456 7548 2.005960 CTAGGGTTGCCTCTCGGACG 62.006 65.000 0.00 0.00 0.00 4.79
5457 7549 1.817209 CTAGGGTTGCCTCTCGGAC 59.183 63.158 0.00 0.00 0.00 4.79
5458 7550 2.058595 GCTAGGGTTGCCTCTCGGA 61.059 63.158 0.00 0.00 0.00 4.55
5459 7551 2.501610 GCTAGGGTTGCCTCTCGG 59.498 66.667 0.00 0.00 0.00 4.63
5460 7552 2.501610 GGCTAGGGTTGCCTCTCG 59.498 66.667 0.00 0.00 46.38 4.04
5493 7585 3.039526 AGGGAGAGGAGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
5494 7586 2.612251 GAGGGAGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
5495 7587 2.018086 AGGAGGGAGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
5496 7588 1.541672 GAGGAGGGAGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
5497 7589 1.541672 GGAGGAGGGAGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
5498 7590 2.015726 GGGAGGAGGGAGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
5499 7591 2.018086 AGGGAGGAGGGAGAGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
5500 7592 1.541672 GAGGGAGGAGGGAGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
5501 7593 2.387772 CGAGGGAGGAGGGAGAGGA 61.388 68.421 0.00 0.00 0.00 3.71
5502 7594 2.197324 CGAGGGAGGAGGGAGAGG 59.803 72.222 0.00 0.00 0.00 3.69
5503 7595 2.520741 GCGAGGGAGGAGGGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
5504 7596 4.144727 GGCGAGGGAGGAGGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
5535 7627 3.793144 CTGACTTTGCCCGCTCGC 61.793 66.667 0.00 0.00 0.00 5.03
5536 7628 3.793144 GCTGACTTTGCCCGCTCG 61.793 66.667 0.00 0.00 0.00 5.03
5537 7629 3.435186 GGCTGACTTTGCCCGCTC 61.435 66.667 0.00 0.00 44.32 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.