Multiple sequence alignment - TraesCS3B01G390500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G390500 chr3B 100.000 2753 0 0 1 2753 615633770 615631018 0.000000e+00 5084
1 TraesCS3B01G390500 chr3B 97.087 206 5 1 2548 2753 344956429 344956633 2.030000e-91 346
2 TraesCS3B01G390500 chr3B 95.146 206 9 1 2548 2753 369098125 369098329 9.510000e-85 324
3 TraesCS3B01G390500 chr3B 94.660 206 9 2 2548 2752 412699492 412699696 4.420000e-83 318
4 TraesCS3B01G390500 chr3A 90.028 1775 94 43 808 2519 605981817 605980063 0.000000e+00 2220
5 TraesCS3B01G390500 chr3A 79.371 509 48 29 25 478 605982510 605982004 3.440000e-79 305
6 TraesCS3B01G390500 chr3D 92.546 1194 48 18 809 1988 462839133 462837967 0.000000e+00 1674
7 TraesCS3B01G390500 chr3D 92.421 409 26 2 1371 1778 308763771 308764175 1.840000e-161 579
8 TraesCS3B01G390500 chr3D 84.039 614 52 26 45 637 462841072 462840484 1.440000e-152 549
9 TraesCS3B01G390500 chr3D 88.152 211 19 4 2320 2529 462832993 462832788 2.120000e-61 246
10 TraesCS3B01G390500 chr3D 76.211 454 40 45 1680 2089 462833522 462833093 7.830000e-41 178
11 TraesCS3B01G390500 chrUn 91.545 615 41 7 1168 1778 248128717 248129324 0.000000e+00 837
12 TraesCS3B01G390500 chr2B 91.057 615 45 6 1169 1778 654705386 654705995 0.000000e+00 822
13 TraesCS3B01G390500 chr2B 91.071 616 42 7 1168 1778 654655282 654655889 0.000000e+00 821
14 TraesCS3B01G390500 chr2B 90.732 615 46 7 1168 1778 654683554 654684161 0.000000e+00 809
15 TraesCS3B01G390500 chr2B 90.584 616 48 6 1168 1778 654734311 654734921 0.000000e+00 808
16 TraesCS3B01G390500 chr2B 90.830 229 17 4 2526 2753 480066655 480066430 1.240000e-78 303
17 TraesCS3B01G390500 chr4B 86.481 540 36 21 2020 2528 576406086 576405553 2.390000e-155 558
18 TraesCS3B01G390500 chr1A 91.842 380 25 3 1168 1542 551827757 551828135 2.430000e-145 525
19 TraesCS3B01G390500 chr1A 94.521 146 8 0 1110 1255 513745291 513745146 2.760000e-55 226
20 TraesCS3B01G390500 chr1A 91.150 113 6 1 1666 1778 551828427 551828535 1.710000e-32 150
21 TraesCS3B01G390500 chr2A 89.710 379 28 5 1956 2323 32341197 32341575 8.920000e-130 473
22 TraesCS3B01G390500 chr2A 96.753 154 5 0 2170 2323 32346614 32346767 9.780000e-65 257
23 TraesCS3B01G390500 chr5B 96.602 206 6 1 2548 2753 44771295 44771091 9.440000e-90 340
24 TraesCS3B01G390500 chr5B 95.146 206 9 1 2548 2753 478699115 478698911 9.510000e-85 324
25 TraesCS3B01G390500 chr7B 95.146 206 9 1 2548 2753 118640057 118639853 9.510000e-85 324
26 TraesCS3B01G390500 chr6B 95.146 206 9 1 2548 2753 696413566 696413770 9.510000e-85 324
27 TraesCS3B01G390500 chr6A 91.667 228 17 2 2526 2753 359015207 359015432 5.720000e-82 315
28 TraesCS3B01G390500 chr5A 82.692 208 22 11 1110 1313 562487269 562487466 3.640000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G390500 chr3B 615631018 615633770 2752 True 5084.0 5084 100.0000 1 2753 1 chr3B.!!$R1 2752
1 TraesCS3B01G390500 chr3A 605980063 605982510 2447 True 1262.5 2220 84.6995 25 2519 2 chr3A.!!$R1 2494
2 TraesCS3B01G390500 chr3D 462837967 462841072 3105 True 1111.5 1674 88.2925 45 1988 2 chr3D.!!$R2 1943
3 TraesCS3B01G390500 chr3D 462832788 462833522 734 True 212.0 246 82.1815 1680 2529 2 chr3D.!!$R1 849
4 TraesCS3B01G390500 chrUn 248128717 248129324 607 False 837.0 837 91.5450 1168 1778 1 chrUn.!!$F1 610
5 TraesCS3B01G390500 chr2B 654705386 654705995 609 False 822.0 822 91.0570 1169 1778 1 chr2B.!!$F3 609
6 TraesCS3B01G390500 chr2B 654655282 654655889 607 False 821.0 821 91.0710 1168 1778 1 chr2B.!!$F1 610
7 TraesCS3B01G390500 chr2B 654683554 654684161 607 False 809.0 809 90.7320 1168 1778 1 chr2B.!!$F2 610
8 TraesCS3B01G390500 chr2B 654734311 654734921 610 False 808.0 808 90.5840 1168 1778 1 chr2B.!!$F4 610
9 TraesCS3B01G390500 chr4B 576405553 576406086 533 True 558.0 558 86.4810 2020 2528 1 chr4B.!!$R1 508
10 TraesCS3B01G390500 chr1A 551827757 551828535 778 False 337.5 525 91.4960 1168 1778 2 chr1A.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 2124 0.099259 TGGAGTACACGATAACGCCG 59.901 55.0 0.0 0.0 43.96 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2384 4028 0.108329 ACGGCCAACCTAATCTGACG 60.108 55.0 2.24 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.022557 AGGCCATTGTTAGATGCATGT 57.977 42.857 2.46 1.37 0.00 3.21
21 22 4.169059 AGGCCATTGTTAGATGCATGTA 57.831 40.909 2.46 0.01 0.00 2.29
22 23 4.535781 AGGCCATTGTTAGATGCATGTAA 58.464 39.130 12.00 12.00 0.00 2.41
23 24 5.142639 AGGCCATTGTTAGATGCATGTAAT 58.857 37.500 18.22 2.30 0.00 1.89
37 38 7.972277 AGATGCATGTAATTCAACAAATCTCAC 59.028 33.333 2.46 0.00 29.29 3.51
63 69 1.052287 GTGCAAATTTTGGCTCGTCG 58.948 50.000 10.96 0.00 0.00 5.12
68 74 2.979813 CAAATTTTGGCTCGTCGAAAGG 59.020 45.455 0.97 0.00 0.00 3.11
79 85 4.106029 TCGTCGAAAGGAGAAATGTAGG 57.894 45.455 0.00 0.00 0.00 3.18
80 86 3.119245 TCGTCGAAAGGAGAAATGTAGGG 60.119 47.826 0.00 0.00 0.00 3.53
85 91 5.045869 TCGAAAGGAGAAATGTAGGGTTCAT 60.046 40.000 0.00 0.00 0.00 2.57
90 96 6.314917 AGGAGAAATGTAGGGTTCATTGTTT 58.685 36.000 0.00 0.00 35.95 2.83
93 99 7.598869 GGAGAAATGTAGGGTTCATTGTTTTTC 59.401 37.037 0.00 0.00 35.95 2.29
94 100 8.250143 AGAAATGTAGGGTTCATTGTTTTTCT 57.750 30.769 0.00 0.00 35.95 2.52
96 102 8.887036 AAATGTAGGGTTCATTGTTTTTCTTC 57.113 30.769 0.00 0.00 35.95 2.87
128 146 6.882610 TGCACTTTCTCACTCAAAATACAT 57.117 33.333 0.00 0.00 0.00 2.29
239 260 7.418840 TGCGTCATTGCAAAAGAAAAATAAT 57.581 28.000 1.71 0.00 43.02 1.28
240 261 7.859598 TGCGTCATTGCAAAAGAAAAATAATT 58.140 26.923 1.71 0.00 43.02 1.40
260 284 5.576447 ATTAGGTAATTGCCGAACCAAAG 57.424 39.130 10.13 0.00 35.64 2.77
261 285 2.167662 AGGTAATTGCCGAACCAAAGG 58.832 47.619 6.95 0.00 35.64 3.11
262 286 1.203758 GGTAATTGCCGAACCAAAGGG 59.796 52.381 0.00 0.00 41.29 3.95
362 414 6.093633 GGCCAATCTAAACTTTATCGACTTGT 59.906 38.462 0.00 0.00 0.00 3.16
364 416 7.148474 GCCAATCTAAACTTTATCGACTTGTGA 60.148 37.037 0.00 0.00 0.00 3.58
398 450 7.254727 GCACATCTCCTATCTCTGCTTAAAAAG 60.255 40.741 0.00 0.00 0.00 2.27
399 451 7.984050 CACATCTCCTATCTCTGCTTAAAAAGA 59.016 37.037 0.00 0.00 0.00 2.52
401 453 9.044150 CATCTCCTATCTCTGCTTAAAAAGAAG 57.956 37.037 0.00 0.00 35.31 2.85
402 454 8.140112 TCTCCTATCTCTGCTTAAAAAGAAGT 57.860 34.615 0.00 0.00 35.52 3.01
403 455 8.598041 TCTCCTATCTCTGCTTAAAAAGAAGTT 58.402 33.333 0.00 0.00 35.52 2.66
404 456 9.877178 CTCCTATCTCTGCTTAAAAAGAAGTTA 57.123 33.333 0.00 0.00 35.52 2.24
560 616 7.206981 GATGTAACATCACATCCCAATTAGG 57.793 40.000 5.16 0.00 46.02 2.69
619 676 7.045725 CATAATTGCAAGCTGTTTTTCTCTG 57.954 36.000 4.94 0.00 0.00 3.35
626 683 1.336755 GCTGTTTTTCTCTGGCGGAAA 59.663 47.619 0.00 0.00 0.00 3.13
637 694 2.496871 TCTGGCGGAAAATCATTTGCAT 59.503 40.909 0.00 0.00 36.74 3.96
638 695 3.698539 TCTGGCGGAAAATCATTTGCATA 59.301 39.130 0.00 0.00 36.74 3.14
639 696 3.779759 TGGCGGAAAATCATTTGCATAC 58.220 40.909 0.00 0.00 36.74 2.39
640 697 3.446873 TGGCGGAAAATCATTTGCATACT 59.553 39.130 0.00 0.00 36.74 2.12
641 698 3.798337 GGCGGAAAATCATTTGCATACTG 59.202 43.478 0.00 0.00 36.74 2.74
642 699 3.243643 GCGGAAAATCATTTGCATACTGC 59.756 43.478 0.00 0.00 45.29 4.40
643 700 4.675510 CGGAAAATCATTTGCATACTGCT 58.324 39.130 0.34 0.00 45.31 4.24
644 701 5.733091 GCGGAAAATCATTTGCATACTGCTA 60.733 40.000 0.34 0.00 45.31 3.49
645 702 5.911280 CGGAAAATCATTTGCATACTGCTAG 59.089 40.000 0.34 0.00 45.31 3.42
646 703 6.458751 CGGAAAATCATTTGCATACTGCTAGT 60.459 38.462 0.34 0.00 45.31 2.57
647 704 7.254761 CGGAAAATCATTTGCATACTGCTAGTA 60.255 37.037 0.34 0.00 45.31 1.82
648 705 7.857885 GGAAAATCATTTGCATACTGCTAGTAC 59.142 37.037 0.34 0.00 45.31 2.73
649 706 8.511604 AAAATCATTTGCATACTGCTAGTACT 57.488 30.769 0.00 0.00 45.31 2.73
650 707 9.613428 AAAATCATTTGCATACTGCTAGTACTA 57.387 29.630 1.89 1.89 45.31 1.82
651 708 9.613428 AAATCATTTGCATACTGCTAGTACTAA 57.387 29.630 3.76 0.00 45.31 2.24
652 709 9.784531 AATCATTTGCATACTGCTAGTACTAAT 57.215 29.630 3.76 0.00 45.31 1.73
653 710 9.784531 ATCATTTGCATACTGCTAGTACTAATT 57.215 29.630 3.76 0.00 45.31 1.40
683 741 3.243201 TGCTCACTATCAGCGTATCACAG 60.243 47.826 0.00 0.00 40.01 3.66
714 2039 2.303022 CTCCAGAAGTTTCCTACTGCCA 59.697 50.000 0.00 0.00 37.12 4.92
715 2040 2.912956 TCCAGAAGTTTCCTACTGCCAT 59.087 45.455 0.00 0.00 37.12 4.40
716 2041 3.055094 TCCAGAAGTTTCCTACTGCCATC 60.055 47.826 0.00 0.00 37.12 3.51
717 2042 3.274288 CAGAAGTTTCCTACTGCCATCC 58.726 50.000 0.00 0.00 37.12 3.51
718 2043 2.239907 AGAAGTTTCCTACTGCCATCCC 59.760 50.000 0.00 0.00 37.12 3.85
719 2044 0.541863 AGTTTCCTACTGCCATCCCG 59.458 55.000 0.00 0.00 35.19 5.14
720 2045 1.095807 GTTTCCTACTGCCATCCCGC 61.096 60.000 0.00 0.00 0.00 6.13
721 2046 1.558167 TTTCCTACTGCCATCCCGCA 61.558 55.000 0.00 0.00 37.19 5.69
722 2047 1.558167 TTCCTACTGCCATCCCGCAA 61.558 55.000 0.00 0.00 38.56 4.85
723 2048 1.077787 CCTACTGCCATCCCGCAAA 60.078 57.895 0.00 0.00 38.56 3.68
724 2049 0.679640 CCTACTGCCATCCCGCAAAA 60.680 55.000 0.00 0.00 38.56 2.44
725 2050 1.173043 CTACTGCCATCCCGCAAAAA 58.827 50.000 0.00 0.00 38.56 1.94
749 2074 6.392625 AAAGAAAAGAAGTTTCCTACTGCC 57.607 37.500 0.00 0.00 45.91 4.85
750 2075 5.048846 AGAAAAGAAGTTTCCTACTGCCA 57.951 39.130 0.00 0.00 45.91 4.92
751 2076 5.635120 AGAAAAGAAGTTTCCTACTGCCAT 58.365 37.500 0.00 0.00 45.91 4.40
789 2114 9.391006 TCCAAACAAGATTATATTGGAGTACAC 57.609 33.333 4.57 0.00 43.33 2.90
790 2115 8.335356 CCAAACAAGATTATATTGGAGTACACG 58.665 37.037 4.57 0.00 42.46 4.49
791 2116 9.093970 CAAACAAGATTATATTGGAGTACACGA 57.906 33.333 4.57 0.00 31.76 4.35
792 2117 9.832445 AAACAAGATTATATTGGAGTACACGAT 57.168 29.630 4.57 0.00 31.76 3.73
796 2121 9.622004 AAGATTATATTGGAGTACACGATAACG 57.378 33.333 0.00 0.00 45.75 3.18
797 2122 7.754027 AGATTATATTGGAGTACACGATAACGC 59.246 37.037 0.00 0.00 43.96 4.84
798 2123 2.282701 TTGGAGTACACGATAACGCC 57.717 50.000 0.00 0.00 43.96 5.68
799 2124 0.099259 TGGAGTACACGATAACGCCG 59.901 55.000 0.00 0.00 43.96 6.46
800 2125 0.099436 GGAGTACACGATAACGCCGT 59.901 55.000 0.00 0.00 43.96 5.68
805 2130 4.157817 ACGATAACGCCGTGACAC 57.842 55.556 0.00 0.00 43.96 3.67
806 2131 1.582968 ACGATAACGCCGTGACACT 59.417 52.632 3.68 0.00 43.96 3.55
874 2205 2.905736 CACCCCAGTCCAATCCAAAATT 59.094 45.455 0.00 0.00 0.00 1.82
917 2248 0.668706 CTCTCACTTGGCACCACTCG 60.669 60.000 0.00 0.00 0.00 4.18
922 2253 1.669115 CTTGGCACCACTCGACCAG 60.669 63.158 0.00 0.00 32.79 4.00
932 2263 2.647356 CTCGACCAGAGTCCACAGT 58.353 57.895 0.00 0.00 41.99 3.55
933 2264 0.523966 CTCGACCAGAGTCCACAGTC 59.476 60.000 0.00 0.00 41.99 3.51
934 2265 0.894184 TCGACCAGAGTCCACAGTCC 60.894 60.000 0.00 0.00 40.12 3.85
935 2266 1.179174 CGACCAGAGTCCACAGTCCA 61.179 60.000 0.00 0.00 40.12 4.02
936 2267 0.318762 GACCAGAGTCCACAGTCCAC 59.681 60.000 0.00 0.00 37.00 4.02
937 2268 0.398522 ACCAGAGTCCACAGTCCACA 60.399 55.000 0.00 0.00 0.00 4.17
938 2269 0.319728 CCAGAGTCCACAGTCCACAG 59.680 60.000 0.00 0.00 0.00 3.66
939 2270 1.043816 CAGAGTCCACAGTCCACAGT 58.956 55.000 0.00 0.00 0.00 3.55
940 2271 1.000283 CAGAGTCCACAGTCCACAGTC 60.000 57.143 0.00 0.00 0.00 3.51
941 2272 0.318762 GAGTCCACAGTCCACAGTCC 59.681 60.000 0.00 0.00 0.00 3.85
942 2273 0.398522 AGTCCACAGTCCACAGTCCA 60.399 55.000 0.00 0.00 0.00 4.02
943 2274 0.687354 GTCCACAGTCCACAGTCCAT 59.313 55.000 0.00 0.00 0.00 3.41
944 2275 1.899814 GTCCACAGTCCACAGTCCATA 59.100 52.381 0.00 0.00 0.00 2.74
945 2276 2.093973 GTCCACAGTCCACAGTCCATAG 60.094 54.545 0.00 0.00 0.00 2.23
946 2277 1.902508 CCACAGTCCACAGTCCATAGT 59.097 52.381 0.00 0.00 0.00 2.12
947 2278 2.093973 CCACAGTCCACAGTCCATAGTC 60.094 54.545 0.00 0.00 0.00 2.59
948 2279 2.093973 CACAGTCCACAGTCCATAGTCC 60.094 54.545 0.00 0.00 0.00 3.85
958 2289 1.135083 GTCCATAGTCCGTCCACAGTG 60.135 57.143 0.00 0.00 0.00 3.66
1116 2472 2.098233 CAACTGCGCGTACCCGATT 61.098 57.895 8.43 0.00 35.63 3.34
1425 2791 2.029964 GACGGCTTCAACGTGGGA 59.970 61.111 0.00 0.00 45.68 4.37
1434 2800 1.227438 CAACGTGGGACTGTCGGTT 60.227 57.895 1.07 1.13 0.00 4.44
1496 2862 1.739562 GCAAGGACCTGACGCAGAG 60.740 63.158 0.00 2.32 32.44 3.35
1655 3027 5.509163 CCAAGTACTCGGACTTCTTCAAGAA 60.509 44.000 0.00 0.00 37.57 2.52
1686 3226 2.511600 GCCTTCACCTACGCGCAT 60.512 61.111 5.73 0.00 0.00 4.73
1756 3296 3.954904 GGTCATCTTCTGCCACTAGACTA 59.045 47.826 0.00 0.00 0.00 2.59
1758 3298 4.884744 GTCATCTTCTGCCACTAGACTAGA 59.115 45.833 16.55 0.00 0.00 2.43
1759 3299 5.008613 GTCATCTTCTGCCACTAGACTAGAG 59.991 48.000 16.55 8.19 0.00 2.43
1760 3300 3.892284 TCTTCTGCCACTAGACTAGAGG 58.108 50.000 18.76 18.76 39.25 3.69
1761 3301 3.267291 TCTTCTGCCACTAGACTAGAGGT 59.733 47.826 22.39 0.00 38.59 3.85
1828 3398 0.105593 CTGGGTCTGGGATCGATGTG 59.894 60.000 0.54 0.00 0.00 3.21
1968 3564 4.282496 AGTAGTATGGTGTTAGCTGCTCT 58.718 43.478 4.91 0.00 0.00 4.09
2011 3607 5.114764 TGTTTAGATGGGCATTGATCTGA 57.885 39.130 0.00 0.00 31.29 3.27
2016 3612 3.137728 AGATGGGCATTGATCTGATCACA 59.862 43.478 19.41 13.83 39.39 3.58
2030 3637 4.082274 TGATCACATGTTTCAATCACGC 57.918 40.909 0.00 0.00 0.00 5.34
2056 3663 2.622942 TGTGCATTTGAGTTCAACTCCC 59.377 45.455 15.20 0.00 44.44 4.30
2071 3678 4.102367 TCAACTCCCTTTTCCCCATTTTTG 59.898 41.667 0.00 0.00 0.00 2.44
2079 3686 5.700832 CCTTTTCCCCATTTTTGCTCTTAAC 59.299 40.000 0.00 0.00 0.00 2.01
2312 3948 0.537188 AGCCATGAACTCTACACCGG 59.463 55.000 0.00 0.00 0.00 5.28
2313 3949 0.462047 GCCATGAACTCTACACCGGG 60.462 60.000 6.32 0.00 0.00 5.73
2314 3950 0.178068 CCATGAACTCTACACCGGGG 59.822 60.000 0.00 0.00 0.00 5.73
2315 3951 0.178068 CATGAACTCTACACCGGGGG 59.822 60.000 9.50 0.00 0.00 5.40
2383 4027 4.338400 CGTCCCTTTCTCCTTTCAGTTTTT 59.662 41.667 0.00 0.00 0.00 1.94
2384 4028 5.505819 CGTCCCTTTCTCCTTTCAGTTTTTC 60.506 44.000 0.00 0.00 0.00 2.29
2385 4029 4.578928 TCCCTTTCTCCTTTCAGTTTTTCG 59.421 41.667 0.00 0.00 0.00 3.46
2386 4030 4.338400 CCCTTTCTCCTTTCAGTTTTTCGT 59.662 41.667 0.00 0.00 0.00 3.85
2387 4031 5.505819 CCCTTTCTCCTTTCAGTTTTTCGTC 60.506 44.000 0.00 0.00 0.00 4.20
2388 4032 5.065988 CCTTTCTCCTTTCAGTTTTTCGTCA 59.934 40.000 0.00 0.00 0.00 4.35
2389 4033 5.734855 TTCTCCTTTCAGTTTTTCGTCAG 57.265 39.130 0.00 0.00 0.00 3.51
2390 4034 5.018539 TCTCCTTTCAGTTTTTCGTCAGA 57.981 39.130 0.00 0.00 0.00 3.27
2391 4035 5.611374 TCTCCTTTCAGTTTTTCGTCAGAT 58.389 37.500 0.00 0.00 0.00 2.90
2393 4037 7.214381 TCTCCTTTCAGTTTTTCGTCAGATTA 58.786 34.615 0.00 0.00 0.00 1.75
2394 4038 7.385205 TCTCCTTTCAGTTTTTCGTCAGATTAG 59.615 37.037 0.00 0.00 0.00 1.73
2395 4039 6.426937 TCCTTTCAGTTTTTCGTCAGATTAGG 59.573 38.462 0.00 0.00 0.00 2.69
2420 4064 2.413837 CCGTGTCCTTTTCGTCAGATT 58.586 47.619 0.00 0.00 0.00 2.40
2532 4176 2.657297 ACGTAAGGTCGTTAGGGCA 58.343 52.632 9.17 0.00 41.37 5.36
2533 4177 1.188863 ACGTAAGGTCGTTAGGGCAT 58.811 50.000 9.17 0.00 41.37 4.40
2534 4178 1.134907 ACGTAAGGTCGTTAGGGCATG 60.135 52.381 9.17 0.00 41.37 4.06
2535 4179 1.134907 CGTAAGGTCGTTAGGGCATGT 60.135 52.381 0.00 0.00 0.00 3.21
2536 4180 2.277084 GTAAGGTCGTTAGGGCATGTG 58.723 52.381 0.00 0.00 0.00 3.21
2537 4181 0.676782 AAGGTCGTTAGGGCATGTGC 60.677 55.000 0.00 0.00 41.14 4.57
2538 4182 1.376683 GGTCGTTAGGGCATGTGCA 60.377 57.895 7.36 0.00 44.36 4.57
2539 4183 0.958382 GGTCGTTAGGGCATGTGCAA 60.958 55.000 7.36 0.00 44.36 4.08
2540 4184 1.094785 GTCGTTAGGGCATGTGCAAT 58.905 50.000 7.36 0.00 44.36 3.56
2541 4185 1.093972 TCGTTAGGGCATGTGCAATG 58.906 50.000 7.36 0.00 44.36 2.82
2542 4186 0.101040 CGTTAGGGCATGTGCAATGG 59.899 55.000 7.36 0.00 44.36 3.16
2543 4187 1.185315 GTTAGGGCATGTGCAATGGT 58.815 50.000 7.36 0.00 44.36 3.55
2544 4188 1.135024 GTTAGGGCATGTGCAATGGTG 60.135 52.381 7.36 0.00 44.36 4.17
2545 4189 0.683828 TAGGGCATGTGCAATGGTGG 60.684 55.000 7.36 0.00 44.36 4.61
2546 4190 2.580276 GGCATGTGCAATGGTGGG 59.420 61.111 7.36 0.00 44.36 4.61
2547 4191 2.125431 GCATGTGCAATGGTGGGC 60.125 61.111 0.00 0.00 41.59 5.36
2548 4192 2.945161 GCATGTGCAATGGTGGGCA 61.945 57.895 0.00 0.00 41.59 5.36
2549 4193 1.901820 CATGTGCAATGGTGGGCAT 59.098 52.632 0.00 0.00 42.75 4.40
2550 4194 1.112950 CATGTGCAATGGTGGGCATA 58.887 50.000 0.00 0.00 42.75 3.14
2551 4195 1.689813 CATGTGCAATGGTGGGCATAT 59.310 47.619 0.00 0.00 41.65 1.78
2552 4196 1.112950 TGTGCAATGGTGGGCATATG 58.887 50.000 0.00 0.00 42.75 1.78
2553 4197 0.390124 GTGCAATGGTGGGCATATGG 59.610 55.000 4.56 0.00 42.75 2.74
2554 4198 1.368579 GCAATGGTGGGCATATGGC 59.631 57.895 20.55 20.55 43.74 4.40
2563 4207 4.927557 GCATATGGCCCCATGACA 57.072 55.556 15.92 0.00 37.82 3.58
2564 4208 3.130264 GCATATGGCCCCATGACAA 57.870 52.632 15.92 0.00 37.82 3.18
2565 4209 1.412079 GCATATGGCCCCATGACAAA 58.588 50.000 15.92 0.00 37.82 2.83
2566 4210 1.761784 GCATATGGCCCCATGACAAAA 59.238 47.619 15.92 0.00 37.82 2.44
2567 4211 2.170187 GCATATGGCCCCATGACAAAAA 59.830 45.455 15.92 0.00 37.82 1.94
2568 4212 3.742013 GCATATGGCCCCATGACAAAAAG 60.742 47.826 15.92 0.00 37.82 2.27
2569 4213 2.028561 ATGGCCCCATGACAAAAAGT 57.971 45.000 0.00 0.00 35.03 2.66
2570 4214 2.685106 TGGCCCCATGACAAAAAGTA 57.315 45.000 0.00 0.00 0.00 2.24
2571 4215 2.964209 TGGCCCCATGACAAAAAGTAA 58.036 42.857 0.00 0.00 0.00 2.24
2572 4216 3.515562 TGGCCCCATGACAAAAAGTAAT 58.484 40.909 0.00 0.00 0.00 1.89
2573 4217 3.906846 TGGCCCCATGACAAAAAGTAATT 59.093 39.130 0.00 0.00 0.00 1.40
2574 4218 4.349342 TGGCCCCATGACAAAAAGTAATTT 59.651 37.500 0.00 0.00 0.00 1.82
2575 4219 4.694982 GGCCCCATGACAAAAAGTAATTTG 59.305 41.667 0.00 0.00 44.11 2.32
2576 4220 5.512232 GGCCCCATGACAAAAAGTAATTTGA 60.512 40.000 6.76 0.00 41.73 2.69
2577 4221 5.994668 GCCCCATGACAAAAAGTAATTTGAA 59.005 36.000 6.76 0.00 41.73 2.69
2578 4222 6.147656 GCCCCATGACAAAAAGTAATTTGAAG 59.852 38.462 6.76 0.00 41.73 3.02
2579 4223 6.147656 CCCCATGACAAAAAGTAATTTGAAGC 59.852 38.462 6.76 0.00 41.73 3.86
2580 4224 6.705381 CCCATGACAAAAAGTAATTTGAAGCA 59.295 34.615 6.76 3.04 41.73 3.91
2581 4225 7.388500 CCCATGACAAAAAGTAATTTGAAGCAT 59.612 33.333 6.76 4.86 41.73 3.79
2582 4226 8.437742 CCATGACAAAAAGTAATTTGAAGCATC 58.562 33.333 6.76 0.00 41.73 3.91
2583 4227 9.199982 CATGACAAAAAGTAATTTGAAGCATCT 57.800 29.630 6.76 0.00 41.73 2.90
2585 4229 9.677567 TGACAAAAAGTAATTTGAAGCATCTAC 57.322 29.630 6.76 0.00 41.73 2.59
2586 4230 9.677567 GACAAAAAGTAATTTGAAGCATCTACA 57.322 29.630 6.76 0.00 41.73 2.74
2600 4244 9.466497 TGAAGCATCTACATTAATTTTTCCTCT 57.534 29.630 0.00 0.00 0.00 3.69
2601 4245 9.943163 GAAGCATCTACATTAATTTTTCCTCTC 57.057 33.333 0.00 0.00 0.00 3.20
2602 4246 8.457238 AGCATCTACATTAATTTTTCCTCTCC 57.543 34.615 0.00 0.00 0.00 3.71
2603 4247 8.055181 AGCATCTACATTAATTTTTCCTCTCCA 58.945 33.333 0.00 0.00 0.00 3.86
2604 4248 8.686334 GCATCTACATTAATTTTTCCTCTCCAA 58.314 33.333 0.00 0.00 0.00 3.53
2607 4251 8.686334 TCTACATTAATTTTTCCTCTCCAATGC 58.314 33.333 0.00 0.00 0.00 3.56
2608 4252 7.243604 ACATTAATTTTTCCTCTCCAATGCA 57.756 32.000 0.00 0.00 0.00 3.96
2609 4253 7.678837 ACATTAATTTTTCCTCTCCAATGCAA 58.321 30.769 0.00 0.00 0.00 4.08
2610 4254 7.820872 ACATTAATTTTTCCTCTCCAATGCAAG 59.179 33.333 0.00 0.00 0.00 4.01
2611 4255 3.665745 TTTTTCCTCTCCAATGCAAGC 57.334 42.857 0.00 0.00 0.00 4.01
2612 4256 2.592102 TTTCCTCTCCAATGCAAGCT 57.408 45.000 0.00 0.00 0.00 3.74
2613 4257 3.719268 TTTCCTCTCCAATGCAAGCTA 57.281 42.857 0.00 0.00 0.00 3.32
2614 4258 3.939740 TTCCTCTCCAATGCAAGCTAT 57.060 42.857 0.00 0.00 0.00 2.97
2615 4259 3.482156 TCCTCTCCAATGCAAGCTATC 57.518 47.619 0.00 0.00 0.00 2.08
2616 4260 2.773661 TCCTCTCCAATGCAAGCTATCA 59.226 45.455 0.00 0.00 0.00 2.15
2617 4261 2.877168 CCTCTCCAATGCAAGCTATCAC 59.123 50.000 0.00 0.00 0.00 3.06
2618 4262 3.433314 CCTCTCCAATGCAAGCTATCACT 60.433 47.826 0.00 0.00 0.00 3.41
2619 4263 4.202295 CCTCTCCAATGCAAGCTATCACTA 60.202 45.833 0.00 0.00 0.00 2.74
2620 4264 4.953667 TCTCCAATGCAAGCTATCACTAG 58.046 43.478 0.00 0.00 0.00 2.57
2621 4265 4.406972 TCTCCAATGCAAGCTATCACTAGT 59.593 41.667 0.00 0.00 0.00 2.57
2622 4266 4.445453 TCCAATGCAAGCTATCACTAGTG 58.555 43.478 17.17 17.17 0.00 2.74
2623 4267 3.562973 CCAATGCAAGCTATCACTAGTGG 59.437 47.826 22.48 8.08 0.00 4.00
2624 4268 2.988010 TGCAAGCTATCACTAGTGGG 57.012 50.000 22.48 13.60 0.00 4.61
2625 4269 1.134401 TGCAAGCTATCACTAGTGGGC 60.134 52.381 22.48 21.31 0.00 5.36
2626 4270 1.139853 GCAAGCTATCACTAGTGGGCT 59.860 52.381 22.48 22.90 34.74 5.19
2627 4271 2.420687 GCAAGCTATCACTAGTGGGCTT 60.421 50.000 28.49 28.49 39.59 4.35
2628 4272 3.462021 CAAGCTATCACTAGTGGGCTTC 58.538 50.000 29.94 16.32 38.28 3.86
2629 4273 2.752030 AGCTATCACTAGTGGGCTTCA 58.248 47.619 22.48 2.45 31.56 3.02
2630 4274 3.312890 AGCTATCACTAGTGGGCTTCAT 58.687 45.455 22.48 10.01 31.56 2.57
2631 4275 3.713764 AGCTATCACTAGTGGGCTTCATT 59.286 43.478 22.48 6.24 31.56 2.57
2632 4276 4.901849 AGCTATCACTAGTGGGCTTCATTA 59.098 41.667 22.48 0.13 31.56 1.90
2633 4277 5.366768 AGCTATCACTAGTGGGCTTCATTAA 59.633 40.000 22.48 0.00 31.56 1.40
2634 4278 5.698545 GCTATCACTAGTGGGCTTCATTAAG 59.301 44.000 22.48 4.59 35.68 1.85
2635 4279 5.957771 ATCACTAGTGGGCTTCATTAAGA 57.042 39.130 22.48 0.00 34.37 2.10
2636 4280 5.755409 TCACTAGTGGGCTTCATTAAGAA 57.245 39.130 22.48 0.00 34.37 2.52
2637 4281 6.121776 TCACTAGTGGGCTTCATTAAGAAA 57.878 37.500 22.48 0.00 35.40 2.52
2638 4282 6.721318 TCACTAGTGGGCTTCATTAAGAAAT 58.279 36.000 22.48 0.00 35.40 2.17
2639 4283 7.857456 TCACTAGTGGGCTTCATTAAGAAATA 58.143 34.615 22.48 0.00 35.40 1.40
2640 4284 8.325787 TCACTAGTGGGCTTCATTAAGAAATAA 58.674 33.333 22.48 0.00 35.40 1.40
2641 4285 8.956426 CACTAGTGGGCTTCATTAAGAAATAAA 58.044 33.333 15.49 0.00 35.40 1.40
2642 4286 9.528489 ACTAGTGGGCTTCATTAAGAAATAAAA 57.472 29.630 0.00 0.00 35.40 1.52
2666 4310 9.502091 AAAAATAAAGACTCTAGTACACATGCA 57.498 29.630 0.00 0.00 0.00 3.96
2667 4311 9.672673 AAAATAAAGACTCTAGTACACATGCAT 57.327 29.630 0.00 0.00 0.00 3.96
2668 4312 8.879342 AATAAAGACTCTAGTACACATGCATC 57.121 34.615 0.00 0.00 0.00 3.91
2669 4313 6.537453 AAAGACTCTAGTACACATGCATCT 57.463 37.500 0.00 0.00 0.00 2.90
2670 4314 5.766150 AGACTCTAGTACACATGCATCTC 57.234 43.478 0.00 0.00 0.00 2.75
2671 4315 5.445069 AGACTCTAGTACACATGCATCTCT 58.555 41.667 0.00 0.00 0.00 3.10
2672 4316 6.596621 AGACTCTAGTACACATGCATCTCTA 58.403 40.000 0.00 0.00 0.00 2.43
2673 4317 6.485313 AGACTCTAGTACACATGCATCTCTAC 59.515 42.308 0.00 0.00 0.00 2.59
2674 4318 6.361433 ACTCTAGTACACATGCATCTCTACT 58.639 40.000 0.00 4.19 0.00 2.57
2675 4319 6.831353 ACTCTAGTACACATGCATCTCTACTT 59.169 38.462 0.00 0.00 0.00 2.24
2676 4320 7.340743 ACTCTAGTACACATGCATCTCTACTTT 59.659 37.037 0.00 0.00 0.00 2.66
2677 4321 8.067751 TCTAGTACACATGCATCTCTACTTTT 57.932 34.615 0.00 0.00 0.00 2.27
2678 4322 8.191446 TCTAGTACACATGCATCTCTACTTTTC 58.809 37.037 0.00 0.00 0.00 2.29
2679 4323 6.701340 AGTACACATGCATCTCTACTTTTCA 58.299 36.000 0.00 0.00 0.00 2.69
2680 4324 5.869753 ACACATGCATCTCTACTTTTCAC 57.130 39.130 0.00 0.00 0.00 3.18
2681 4325 5.555017 ACACATGCATCTCTACTTTTCACT 58.445 37.500 0.00 0.00 0.00 3.41
2682 4326 5.641209 ACACATGCATCTCTACTTTTCACTC 59.359 40.000 0.00 0.00 0.00 3.51
2683 4327 5.064452 CACATGCATCTCTACTTTTCACTCC 59.936 44.000 0.00 0.00 0.00 3.85
2684 4328 4.890158 TGCATCTCTACTTTTCACTCCA 57.110 40.909 0.00 0.00 0.00 3.86
2685 4329 5.227569 TGCATCTCTACTTTTCACTCCAA 57.772 39.130 0.00 0.00 0.00 3.53
2686 4330 4.997395 TGCATCTCTACTTTTCACTCCAAC 59.003 41.667 0.00 0.00 0.00 3.77
2687 4331 4.393371 GCATCTCTACTTTTCACTCCAACC 59.607 45.833 0.00 0.00 0.00 3.77
2688 4332 5.799213 CATCTCTACTTTTCACTCCAACCT 58.201 41.667 0.00 0.00 0.00 3.50
2689 4333 5.888982 TCTCTACTTTTCACTCCAACCTT 57.111 39.130 0.00 0.00 0.00 3.50
2690 4334 6.248569 TCTCTACTTTTCACTCCAACCTTT 57.751 37.500 0.00 0.00 0.00 3.11
2691 4335 6.659824 TCTCTACTTTTCACTCCAACCTTTT 58.340 36.000 0.00 0.00 0.00 2.27
2692 4336 6.766467 TCTCTACTTTTCACTCCAACCTTTTC 59.234 38.462 0.00 0.00 0.00 2.29
2693 4337 6.419791 TCTACTTTTCACTCCAACCTTTTCA 58.580 36.000 0.00 0.00 0.00 2.69
2694 4338 5.582689 ACTTTTCACTCCAACCTTTTCAG 57.417 39.130 0.00 0.00 0.00 3.02
2695 4339 4.142160 ACTTTTCACTCCAACCTTTTCAGC 60.142 41.667 0.00 0.00 0.00 4.26
2696 4340 3.297134 TTCACTCCAACCTTTTCAGCT 57.703 42.857 0.00 0.00 0.00 4.24
2697 4341 3.297134 TCACTCCAACCTTTTCAGCTT 57.703 42.857 0.00 0.00 0.00 3.74
2698 4342 3.631250 TCACTCCAACCTTTTCAGCTTT 58.369 40.909 0.00 0.00 0.00 3.51
2699 4343 4.023291 TCACTCCAACCTTTTCAGCTTTT 58.977 39.130 0.00 0.00 0.00 2.27
2700 4344 4.114794 CACTCCAACCTTTTCAGCTTTTG 58.885 43.478 0.00 0.00 0.00 2.44
2701 4345 3.769300 ACTCCAACCTTTTCAGCTTTTGT 59.231 39.130 0.00 0.00 0.00 2.83
2702 4346 4.142160 ACTCCAACCTTTTCAGCTTTTGTC 60.142 41.667 0.00 0.00 0.00 3.18
2703 4347 3.766591 TCCAACCTTTTCAGCTTTTGTCA 59.233 39.130 0.00 0.00 0.00 3.58
2704 4348 4.405358 TCCAACCTTTTCAGCTTTTGTCAT 59.595 37.500 0.00 0.00 0.00 3.06
2705 4349 5.104982 TCCAACCTTTTCAGCTTTTGTCATT 60.105 36.000 0.00 0.00 0.00 2.57
2706 4350 5.006941 CCAACCTTTTCAGCTTTTGTCATTG 59.993 40.000 0.00 0.00 0.00 2.82
2707 4351 4.696455 ACCTTTTCAGCTTTTGTCATTGG 58.304 39.130 0.00 0.00 0.00 3.16
2708 4352 4.405358 ACCTTTTCAGCTTTTGTCATTGGA 59.595 37.500 0.00 0.00 0.00 3.53
2709 4353 4.746611 CCTTTTCAGCTTTTGTCATTGGAC 59.253 41.667 0.00 0.00 44.57 4.02
2710 4354 4.320608 TTTCAGCTTTTGTCATTGGACC 57.679 40.909 0.00 0.00 43.65 4.46
2711 4355 2.942804 TCAGCTTTTGTCATTGGACCA 58.057 42.857 0.00 0.00 43.65 4.02
2712 4356 3.499338 TCAGCTTTTGTCATTGGACCAT 58.501 40.909 0.00 0.00 43.65 3.55
2713 4357 4.661222 TCAGCTTTTGTCATTGGACCATA 58.339 39.130 0.00 0.00 43.65 2.74
2714 4358 4.458989 TCAGCTTTTGTCATTGGACCATAC 59.541 41.667 0.00 0.00 43.65 2.39
2715 4359 4.460382 CAGCTTTTGTCATTGGACCATACT 59.540 41.667 0.00 0.00 43.65 2.12
2716 4360 5.047802 CAGCTTTTGTCATTGGACCATACTT 60.048 40.000 0.00 0.00 43.65 2.24
2717 4361 5.539955 AGCTTTTGTCATTGGACCATACTTT 59.460 36.000 0.00 0.00 43.65 2.66
2718 4362 6.041979 AGCTTTTGTCATTGGACCATACTTTT 59.958 34.615 0.00 0.00 43.65 2.27
2719 4363 6.705825 GCTTTTGTCATTGGACCATACTTTTT 59.294 34.615 0.00 0.00 43.65 1.94
2720 4364 7.095649 GCTTTTGTCATTGGACCATACTTTTTC 60.096 37.037 0.00 0.00 43.65 2.29
2721 4365 7.595819 TTTGTCATTGGACCATACTTTTTCT 57.404 32.000 0.00 0.00 43.65 2.52
2722 4366 6.817765 TGTCATTGGACCATACTTTTTCTC 57.182 37.500 0.00 0.00 43.65 2.87
2723 4367 6.542821 TGTCATTGGACCATACTTTTTCTCT 58.457 36.000 0.00 0.00 43.65 3.10
2724 4368 7.004086 TGTCATTGGACCATACTTTTTCTCTT 58.996 34.615 0.00 0.00 43.65 2.85
2725 4369 7.174946 TGTCATTGGACCATACTTTTTCTCTTC 59.825 37.037 0.00 0.00 43.65 2.87
2726 4370 7.174946 GTCATTGGACCATACTTTTTCTCTTCA 59.825 37.037 0.00 0.00 38.12 3.02
2727 4371 7.723616 TCATTGGACCATACTTTTTCTCTTCAA 59.276 33.333 0.00 0.00 0.00 2.69
2728 4372 7.510549 TTGGACCATACTTTTTCTCTTCAAG 57.489 36.000 0.00 0.00 0.00 3.02
2729 4373 5.473504 TGGACCATACTTTTTCTCTTCAAGC 59.526 40.000 0.00 0.00 0.00 4.01
2730 4374 5.473504 GGACCATACTTTTTCTCTTCAAGCA 59.526 40.000 0.00 0.00 0.00 3.91
2731 4375 6.319141 ACCATACTTTTTCTCTTCAAGCAC 57.681 37.500 0.00 0.00 0.00 4.40
2732 4376 5.241728 ACCATACTTTTTCTCTTCAAGCACC 59.758 40.000 0.00 0.00 0.00 5.01
2733 4377 5.335976 CCATACTTTTTCTCTTCAAGCACCC 60.336 44.000 0.00 0.00 0.00 4.61
2734 4378 2.618709 ACTTTTTCTCTTCAAGCACCCG 59.381 45.455 0.00 0.00 0.00 5.28
2735 4379 0.951558 TTTTCTCTTCAAGCACCCGC 59.048 50.000 0.00 0.00 38.99 6.13
2736 4380 0.889186 TTTCTCTTCAAGCACCCGCC 60.889 55.000 0.00 0.00 39.83 6.13
2737 4381 1.768684 TTCTCTTCAAGCACCCGCCT 61.769 55.000 0.00 0.00 39.83 5.52
2738 4382 1.743252 CTCTTCAAGCACCCGCCTC 60.743 63.158 0.00 0.00 39.83 4.70
2739 4383 2.747855 CTTCAAGCACCCGCCTCC 60.748 66.667 0.00 0.00 39.83 4.30
2740 4384 3.249189 TTCAAGCACCCGCCTCCT 61.249 61.111 0.00 0.00 39.83 3.69
2741 4385 3.551496 TTCAAGCACCCGCCTCCTG 62.551 63.158 0.00 0.00 39.83 3.86
2742 4386 4.020617 CAAGCACCCGCCTCCTGA 62.021 66.667 0.00 0.00 39.83 3.86
2743 4387 3.249189 AAGCACCCGCCTCCTGAA 61.249 61.111 0.00 0.00 39.83 3.02
2744 4388 3.259633 AAGCACCCGCCTCCTGAAG 62.260 63.158 0.00 0.00 39.83 3.02
2745 4389 3.706373 GCACCCGCCTCCTGAAGA 61.706 66.667 0.00 0.00 0.00 2.87
2746 4390 2.581354 CACCCGCCTCCTGAAGAG 59.419 66.667 0.00 0.00 42.83 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.022557 ACATGCATCTAACAATGGCCT 57.977 42.857 3.32 0.00 0.00 5.19
1 2 4.916983 TTACATGCATCTAACAATGGCC 57.083 40.909 0.00 0.00 0.00 5.36
2 3 6.506147 TGAATTACATGCATCTAACAATGGC 58.494 36.000 0.00 0.00 0.00 4.40
4 5 8.914328 TGTTGAATTACATGCATCTAACAATG 57.086 30.769 0.00 0.00 0.00 2.82
5 6 9.926158 TTTGTTGAATTACATGCATCTAACAAT 57.074 25.926 0.00 0.00 36.01 2.71
6 7 9.926158 ATTTGTTGAATTACATGCATCTAACAA 57.074 25.926 0.00 4.64 34.77 2.83
7 8 9.571810 GATTTGTTGAATTACATGCATCTAACA 57.428 29.630 0.00 0.00 0.00 2.41
8 9 9.793252 AGATTTGTTGAATTACATGCATCTAAC 57.207 29.630 0.00 0.00 0.00 2.34
10 11 9.176460 TGAGATTTGTTGAATTACATGCATCTA 57.824 29.630 0.00 0.00 0.00 1.98
11 12 7.972277 GTGAGATTTGTTGAATTACATGCATCT 59.028 33.333 0.00 0.00 0.00 2.90
12 13 7.756272 TGTGAGATTTGTTGAATTACATGCATC 59.244 33.333 0.00 0.00 0.00 3.91
13 14 7.604549 TGTGAGATTTGTTGAATTACATGCAT 58.395 30.769 0.00 0.00 0.00 3.96
14 15 6.979465 TGTGAGATTTGTTGAATTACATGCA 58.021 32.000 0.00 0.00 0.00 3.96
15 16 7.872163 TTGTGAGATTTGTTGAATTACATGC 57.128 32.000 0.00 0.00 0.00 4.06
18 19 9.734620 CTCTTTTGTGAGATTTGTTGAATTACA 57.265 29.630 0.00 0.00 36.23 2.41
19 20 9.736023 ACTCTTTTGTGAGATTTGTTGAATTAC 57.264 29.630 0.00 0.00 37.50 1.89
20 21 9.734620 CACTCTTTTGTGAGATTTGTTGAATTA 57.265 29.630 0.00 0.00 40.12 1.40
21 22 7.223387 GCACTCTTTTGTGAGATTTGTTGAATT 59.777 33.333 0.00 0.00 40.12 2.17
22 23 6.698766 GCACTCTTTTGTGAGATTTGTTGAAT 59.301 34.615 0.00 0.00 40.12 2.57
23 24 6.035843 GCACTCTTTTGTGAGATTTGTTGAA 58.964 36.000 0.00 0.00 40.12 2.69
37 38 4.318263 CGAGCCAAAATTTGCACTCTTTTG 60.318 41.667 18.31 15.57 38.81 2.44
63 69 6.434340 ACAATGAACCCTACATTTCTCCTTTC 59.566 38.462 0.00 0.00 36.07 2.62
68 74 8.360390 AGAAAAACAATGAACCCTACATTTCTC 58.640 33.333 0.00 0.00 36.07 2.87
85 91 9.522804 AAGTGCATAAATAACGAAGAAAAACAA 57.477 25.926 0.00 0.00 0.00 2.83
90 96 8.779303 TGAGAAAGTGCATAAATAACGAAGAAA 58.221 29.630 0.00 0.00 0.00 2.52
93 99 7.743104 AGTGAGAAAGTGCATAAATAACGAAG 58.257 34.615 0.00 0.00 0.00 3.79
94 100 7.386573 TGAGTGAGAAAGTGCATAAATAACGAA 59.613 33.333 0.00 0.00 0.00 3.85
96 102 7.060600 TGAGTGAGAAAGTGCATAAATAACG 57.939 36.000 0.00 0.00 0.00 3.18
149 168 8.736244 ACGTTGTAGGTGCAAATAAATAGAAAT 58.264 29.630 0.00 0.00 0.00 2.17
174 193 5.090652 TGTAATTTGAAGCACACGAAGAC 57.909 39.130 0.00 0.00 0.00 3.01
186 205 6.607689 CCTAGTTTGACGCATGTAATTTGAA 58.392 36.000 0.00 0.00 0.00 2.69
235 256 7.201875 CCTTTGGTTCGGCAATTACCTAATTAT 60.202 37.037 0.00 0.00 34.36 1.28
236 257 6.095720 CCTTTGGTTCGGCAATTACCTAATTA 59.904 38.462 0.00 0.00 34.36 1.40
239 260 3.759618 CCTTTGGTTCGGCAATTACCTAA 59.240 43.478 0.00 0.00 33.05 2.69
240 261 3.349022 CCTTTGGTTCGGCAATTACCTA 58.651 45.455 0.00 0.00 33.05 3.08
248 272 0.475044 AAGTACCCTTTGGTTCGGCA 59.525 50.000 0.00 0.00 44.75 5.69
251 275 2.567985 ACACAAGTACCCTTTGGTTCG 58.432 47.619 0.00 0.00 44.75 3.95
260 284 4.558697 GCCTCATTTCAAACACAAGTACCC 60.559 45.833 0.00 0.00 0.00 3.69
261 285 4.037446 TGCCTCATTTCAAACACAAGTACC 59.963 41.667 0.00 0.00 0.00 3.34
262 286 5.181690 TGCCTCATTTCAAACACAAGTAC 57.818 39.130 0.00 0.00 0.00 2.73
263 287 5.843673 TTGCCTCATTTCAAACACAAGTA 57.156 34.783 0.00 0.00 0.00 2.24
264 288 4.734398 TTGCCTCATTTCAAACACAAGT 57.266 36.364 0.00 0.00 0.00 3.16
265 289 5.393902 GTTTGCCTCATTTCAAACACAAG 57.606 39.130 11.53 0.00 46.65 3.16
330 382 9.965824 CGATAAAGTTTAGATTGGCCATATTTT 57.034 29.630 6.09 2.25 0.00 1.82
362 414 3.726557 AGGAGATGTGCCTCAATTTCA 57.273 42.857 0.00 0.00 34.94 2.69
364 416 5.369110 AGAGATAGGAGATGTGCCTCAATTT 59.631 40.000 0.00 0.00 36.96 1.82
367 419 3.640498 CAGAGATAGGAGATGTGCCTCAA 59.360 47.826 0.00 0.00 36.96 3.02
424 477 5.825679 TGATGTGTTGGCTAAACTTTGTAGT 59.174 36.000 4.78 0.00 39.70 2.73
425 478 6.312399 TGATGTGTTGGCTAAACTTTGTAG 57.688 37.500 4.78 0.00 39.70 2.74
478 532 3.873952 GCAATTGTTTAGGTTGCACCAAA 59.126 39.130 7.40 4.35 45.57 3.28
598 654 4.374399 CCAGAGAAAAACAGCTTGCAATT 58.626 39.130 0.00 0.00 0.00 2.32
599 655 3.801293 GCCAGAGAAAAACAGCTTGCAAT 60.801 43.478 0.00 0.00 0.00 3.56
601 657 1.067516 GCCAGAGAAAAACAGCTTGCA 59.932 47.619 0.00 0.00 0.00 4.08
602 658 1.775869 GCCAGAGAAAAACAGCTTGC 58.224 50.000 0.00 0.00 0.00 4.01
603 659 1.335324 CCGCCAGAGAAAAACAGCTTG 60.335 52.381 0.00 0.00 0.00 4.01
604 660 0.954452 CCGCCAGAGAAAAACAGCTT 59.046 50.000 0.00 0.00 0.00 3.74
605 661 0.108585 TCCGCCAGAGAAAAACAGCT 59.891 50.000 0.00 0.00 0.00 4.24
606 662 0.951558 TTCCGCCAGAGAAAAACAGC 59.048 50.000 0.00 0.00 0.00 4.40
607 663 3.708563 TTTTCCGCCAGAGAAAAACAG 57.291 42.857 0.00 0.00 39.58 3.16
608 664 3.634448 TGATTTTCCGCCAGAGAAAAACA 59.366 39.130 3.10 4.26 44.09 2.83
609 665 4.237349 TGATTTTCCGCCAGAGAAAAAC 57.763 40.909 3.10 1.89 44.09 2.43
615 671 2.094597 TGCAAATGATTTTCCGCCAGAG 60.095 45.455 0.00 0.00 0.00 3.35
619 676 3.798337 CAGTATGCAAATGATTTTCCGCC 59.202 43.478 0.00 0.00 0.00 6.13
637 694 8.844244 GCACCTACTTAATTAGTACTAGCAGTA 58.156 37.037 2.23 7.34 38.33 2.74
638 695 7.560626 AGCACCTACTTAATTAGTACTAGCAGT 59.439 37.037 2.23 6.64 38.33 4.40
639 696 7.942990 AGCACCTACTTAATTAGTACTAGCAG 58.057 38.462 2.23 1.20 38.33 4.24
640 697 7.558807 TGAGCACCTACTTAATTAGTACTAGCA 59.441 37.037 2.23 0.00 38.33 3.49
641 698 7.861872 GTGAGCACCTACTTAATTAGTACTAGC 59.138 40.741 2.23 0.00 38.33 3.42
642 699 9.122779 AGTGAGCACCTACTTAATTAGTACTAG 57.877 37.037 2.23 0.00 38.33 2.57
644 701 7.957992 AGTGAGCACCTACTTAATTAGTACT 57.042 36.000 0.00 0.00 38.33 2.73
645 702 9.896263 GATAGTGAGCACCTACTTAATTAGTAC 57.104 37.037 0.00 0.00 38.33 2.73
646 703 9.636789 TGATAGTGAGCACCTACTTAATTAGTA 57.363 33.333 0.00 0.00 38.33 1.82
647 704 8.534954 TGATAGTGAGCACCTACTTAATTAGT 57.465 34.615 0.00 0.00 41.04 2.24
648 705 7.596995 GCTGATAGTGAGCACCTACTTAATTAG 59.403 40.741 0.00 0.00 36.40 1.73
649 706 7.434492 GCTGATAGTGAGCACCTACTTAATTA 58.566 38.462 0.00 0.00 36.40 1.40
650 707 6.284459 GCTGATAGTGAGCACCTACTTAATT 58.716 40.000 0.00 0.00 36.40 1.40
651 708 5.508153 CGCTGATAGTGAGCACCTACTTAAT 60.508 44.000 0.00 0.00 36.12 1.40
652 709 4.202020 CGCTGATAGTGAGCACCTACTTAA 60.202 45.833 0.00 0.00 36.12 1.85
653 710 3.315470 CGCTGATAGTGAGCACCTACTTA 59.685 47.826 0.00 0.00 36.12 2.24
654 711 2.099921 CGCTGATAGTGAGCACCTACTT 59.900 50.000 0.00 0.00 36.12 2.24
655 712 1.678627 CGCTGATAGTGAGCACCTACT 59.321 52.381 0.00 0.00 36.12 2.57
656 713 1.405821 ACGCTGATAGTGAGCACCTAC 59.594 52.381 0.00 0.00 36.12 3.18
657 714 1.763968 ACGCTGATAGTGAGCACCTA 58.236 50.000 0.00 0.00 36.12 3.08
658 715 1.763968 TACGCTGATAGTGAGCACCT 58.236 50.000 0.00 0.00 36.12 4.00
683 741 4.500127 GAAACTTCTGGAGGAGTAGCTTC 58.500 47.826 0.00 0.00 0.00 3.86
724 2049 7.093509 TGGCAGTAGGAAACTTCTTTTCTTTTT 60.094 33.333 0.00 0.00 43.00 1.94
725 2050 6.379988 TGGCAGTAGGAAACTTCTTTTCTTTT 59.620 34.615 0.00 0.00 43.00 2.27
726 2051 5.891551 TGGCAGTAGGAAACTTCTTTTCTTT 59.108 36.000 0.00 0.00 43.00 2.52
727 2052 5.445964 TGGCAGTAGGAAACTTCTTTTCTT 58.554 37.500 0.00 0.00 43.00 2.52
728 2053 5.048846 TGGCAGTAGGAAACTTCTTTTCT 57.951 39.130 0.00 0.00 43.00 2.52
729 2054 5.966742 ATGGCAGTAGGAAACTTCTTTTC 57.033 39.130 0.00 0.00 42.74 2.29
730 2055 5.598417 ACAATGGCAGTAGGAAACTTCTTTT 59.402 36.000 0.00 0.00 43.67 2.27
731 2056 5.140454 ACAATGGCAGTAGGAAACTTCTTT 58.860 37.500 0.00 0.00 43.67 2.52
732 2057 4.729868 ACAATGGCAGTAGGAAACTTCTT 58.270 39.130 0.00 0.00 43.67 2.52
733 2058 4.373156 ACAATGGCAGTAGGAAACTTCT 57.627 40.909 0.00 0.00 43.67 2.85
734 2059 6.599638 AGATAACAATGGCAGTAGGAAACTTC 59.400 38.462 0.00 0.00 43.67 3.01
735 2060 6.485171 AGATAACAATGGCAGTAGGAAACTT 58.515 36.000 0.00 0.00 43.67 2.66
737 2062 5.880332 TGAGATAACAATGGCAGTAGGAAAC 59.120 40.000 0.00 0.00 0.00 2.78
738 2063 6.061022 TGAGATAACAATGGCAGTAGGAAA 57.939 37.500 0.00 0.00 0.00 3.13
739 2064 5.692115 TGAGATAACAATGGCAGTAGGAA 57.308 39.130 0.00 0.00 0.00 3.36
740 2065 5.692115 TTGAGATAACAATGGCAGTAGGA 57.308 39.130 0.00 0.00 0.00 2.94
741 2066 5.471456 GGATTGAGATAACAATGGCAGTAGG 59.529 44.000 0.00 0.00 40.03 3.18
742 2067 6.057533 TGGATTGAGATAACAATGGCAGTAG 58.942 40.000 0.00 0.00 40.03 2.57
743 2068 6.000246 TGGATTGAGATAACAATGGCAGTA 58.000 37.500 0.00 0.00 40.03 2.74
744 2069 4.858850 TGGATTGAGATAACAATGGCAGT 58.141 39.130 0.00 0.00 40.03 4.40
745 2070 5.840243 TTGGATTGAGATAACAATGGCAG 57.160 39.130 0.00 0.00 40.03 4.85
746 2071 5.479724 TGTTTGGATTGAGATAACAATGGCA 59.520 36.000 0.00 0.00 40.03 4.92
747 2072 5.964758 TGTTTGGATTGAGATAACAATGGC 58.035 37.500 0.00 0.00 40.03 4.40
748 2073 7.829725 TCTTGTTTGGATTGAGATAACAATGG 58.170 34.615 0.00 0.00 40.03 3.16
749 2074 9.865321 AATCTTGTTTGGATTGAGATAACAATG 57.135 29.630 0.00 0.00 40.03 2.82
779 2104 1.467883 CGGCGTTATCGTGTACTCCAA 60.468 52.381 0.00 0.00 39.49 3.53
780 2105 0.099259 CGGCGTTATCGTGTACTCCA 59.901 55.000 0.00 0.00 39.49 3.86
781 2106 0.099436 ACGGCGTTATCGTGTACTCC 59.901 55.000 6.77 0.00 39.55 3.85
782 2107 3.611433 ACGGCGTTATCGTGTACTC 57.389 52.632 6.77 0.00 39.55 2.59
788 2113 0.731514 CAGTGTCACGGCGTTATCGT 60.732 55.000 11.19 0.00 41.93 3.73
789 2114 0.455464 TCAGTGTCACGGCGTTATCG 60.455 55.000 11.19 0.00 40.37 2.92
790 2115 1.269166 CTCAGTGTCACGGCGTTATC 58.731 55.000 11.19 4.21 0.00 1.75
791 2116 0.601558 ACTCAGTGTCACGGCGTTAT 59.398 50.000 11.19 0.00 0.00 1.89
792 2117 0.039798 GACTCAGTGTCACGGCGTTA 60.040 55.000 11.19 0.00 44.73 3.18
793 2118 1.299926 GACTCAGTGTCACGGCGTT 60.300 57.895 11.19 0.00 44.73 4.84
794 2119 2.335369 GACTCAGTGTCACGGCGT 59.665 61.111 6.77 6.77 44.73 5.68
801 2126 1.333931 TCGTGTCAGTGACTCAGTGTC 59.666 52.381 23.29 8.56 45.54 3.67
802 2127 1.065701 GTCGTGTCAGTGACTCAGTGT 59.934 52.381 23.29 0.00 36.33 3.55
803 2128 1.065551 TGTCGTGTCAGTGACTCAGTG 59.934 52.381 23.29 7.47 36.25 3.66
804 2129 1.065701 GTGTCGTGTCAGTGACTCAGT 59.934 52.381 23.29 0.00 36.10 3.41
805 2130 1.600663 GGTGTCGTGTCAGTGACTCAG 60.601 57.143 23.29 15.28 36.10 3.35
806 2131 0.384309 GGTGTCGTGTCAGTGACTCA 59.616 55.000 23.29 13.90 36.10 3.41
874 2205 5.781306 GGGTTTTGGGGTCTTTTTATAGGAA 59.219 40.000 0.00 0.00 0.00 3.36
917 2248 0.318762 GTGGACTGTGGACTCTGGTC 59.681 60.000 0.00 0.00 41.43 4.02
922 2253 0.318762 GGACTGTGGACTGTGGACTC 59.681 60.000 0.00 0.00 0.00 3.36
924 2255 0.687354 ATGGACTGTGGACTGTGGAC 59.313 55.000 0.00 0.00 0.00 4.02
925 2256 2.179427 CTATGGACTGTGGACTGTGGA 58.821 52.381 0.00 0.00 0.00 4.02
926 2257 1.902508 ACTATGGACTGTGGACTGTGG 59.097 52.381 0.00 0.00 0.00 4.17
927 2258 2.093973 GGACTATGGACTGTGGACTGTG 60.094 54.545 0.00 0.00 0.00 3.66
928 2259 2.180276 GGACTATGGACTGTGGACTGT 58.820 52.381 0.00 0.00 0.00 3.55
929 2260 1.135139 CGGACTATGGACTGTGGACTG 59.865 57.143 0.00 0.00 0.00 3.51
930 2261 1.272536 ACGGACTATGGACTGTGGACT 60.273 52.381 0.00 0.00 0.00 3.85
931 2262 1.134560 GACGGACTATGGACTGTGGAC 59.865 57.143 0.00 0.00 0.00 4.02
932 2263 1.471119 GACGGACTATGGACTGTGGA 58.529 55.000 0.00 0.00 0.00 4.02
933 2264 0.460311 GGACGGACTATGGACTGTGG 59.540 60.000 0.00 0.00 0.00 4.17
934 2265 1.135083 GTGGACGGACTATGGACTGTG 60.135 57.143 0.00 0.00 0.00 3.66
935 2266 1.183549 GTGGACGGACTATGGACTGT 58.816 55.000 0.00 0.00 0.00 3.55
936 2267 1.135139 CTGTGGACGGACTATGGACTG 59.865 57.143 0.00 0.00 0.00 3.51
937 2268 1.272536 ACTGTGGACGGACTATGGACT 60.273 52.381 0.00 0.00 0.00 3.85
938 2269 1.135083 CACTGTGGACGGACTATGGAC 60.135 57.143 0.00 0.00 0.00 4.02
939 2270 1.182667 CACTGTGGACGGACTATGGA 58.817 55.000 0.00 0.00 0.00 3.41
940 2271 0.895530 ACACTGTGGACGGACTATGG 59.104 55.000 13.09 0.00 0.00 2.74
941 2272 2.753452 AGTACACTGTGGACGGACTATG 59.247 50.000 17.01 0.00 36.00 2.23
942 2273 2.753452 CAGTACACTGTGGACGGACTAT 59.247 50.000 16.98 0.00 36.00 2.12
943 2274 2.156917 CAGTACACTGTGGACGGACTA 58.843 52.381 16.98 0.00 36.00 2.59
944 2275 0.959553 CAGTACACTGTGGACGGACT 59.040 55.000 16.98 6.60 36.00 3.85
945 2276 0.956633 TCAGTACACTGTGGACGGAC 59.043 55.000 19.93 6.45 44.12 4.79
946 2277 0.956633 GTCAGTACACTGTGGACGGA 59.043 55.000 19.93 19.93 44.12 4.69
947 2278 0.038526 GGTCAGTACACTGTGGACGG 60.039 60.000 17.01 16.48 44.12 4.79
948 2279 0.671796 TGGTCAGTACACTGTGGACG 59.328 55.000 17.01 12.09 44.12 4.79
1389 2755 3.688159 ACCACGCTCACCCCGTAC 61.688 66.667 0.00 0.00 37.12 3.67
1756 3296 3.141488 CGCCGCTGGACTACCTCT 61.141 66.667 0.00 0.00 37.04 3.69
1759 3299 4.874977 GAGCGCCGCTGGACTACC 62.875 72.222 20.07 0.00 39.88 3.18
1828 3398 1.067846 TGAGATGACACGCACTACACC 60.068 52.381 0.00 0.00 0.00 4.16
1968 3564 8.408043 AAACATGTTATTTCAGACTGGAATCA 57.592 30.769 12.46 6.31 0.00 2.57
2011 3607 3.084039 AGGCGTGATTGAAACATGTGAT 58.916 40.909 0.00 0.00 0.00 3.06
2016 3612 4.050553 CACAAAAGGCGTGATTGAAACAT 58.949 39.130 10.96 0.00 36.43 2.71
2030 3637 5.111293 AGTTGAACTCAAATGCACAAAAGG 58.889 37.500 0.00 0.00 37.63 3.11
2056 3663 6.202762 GTGTTAAGAGCAAAAATGGGGAAAAG 59.797 38.462 0.00 0.00 0.00 2.27
2071 3678 5.064441 AGATTTTGCCATGTGTTAAGAGC 57.936 39.130 0.00 0.00 0.00 4.09
2079 3686 2.029739 TGCACAGAGATTTTGCCATGTG 60.030 45.455 0.00 0.00 40.68 3.21
2137 3756 2.487934 CCATACATGTAGAGCAGTGGC 58.512 52.381 11.91 0.00 41.61 5.01
2248 3867 4.129380 CCTGCTGGTATCGATTGATTCAA 58.871 43.478 1.71 0.75 35.99 2.69
2318 3962 1.003972 GCAGAGACGAGAGACATCGAG 60.004 57.143 2.78 0.00 45.56 4.04
2383 4027 0.174845 CGGCCAACCTAATCTGACGA 59.825 55.000 2.24 0.00 0.00 4.20
2384 4028 0.108329 ACGGCCAACCTAATCTGACG 60.108 55.000 2.24 0.00 0.00 4.35
2385 4029 1.338769 ACACGGCCAACCTAATCTGAC 60.339 52.381 2.24 0.00 0.00 3.51
2386 4030 0.981183 ACACGGCCAACCTAATCTGA 59.019 50.000 2.24 0.00 0.00 3.27
2387 4031 1.369625 GACACGGCCAACCTAATCTG 58.630 55.000 2.24 0.00 0.00 2.90
2388 4032 0.252197 GGACACGGCCAACCTAATCT 59.748 55.000 2.24 0.00 0.00 2.40
2389 4033 0.252197 AGGACACGGCCAACCTAATC 59.748 55.000 2.24 0.00 0.00 1.75
2390 4034 0.696501 AAGGACACGGCCAACCTAAT 59.303 50.000 2.24 0.00 32.06 1.73
2391 4035 0.475044 AAAGGACACGGCCAACCTAA 59.525 50.000 2.24 0.00 32.06 2.69
2393 4037 0.822121 GAAAAGGACACGGCCAACCT 60.822 55.000 2.24 2.00 0.00 3.50
2394 4038 1.658114 GAAAAGGACACGGCCAACC 59.342 57.895 2.24 0.00 0.00 3.77
2395 4039 1.281656 CGAAAAGGACACGGCCAAC 59.718 57.895 2.24 0.00 0.00 3.77
2420 4064 1.556911 GAGAGACAAGCCAATCCCAGA 59.443 52.381 0.00 0.00 0.00 3.86
2529 4173 2.580276 CCCACCATTGCACATGCC 59.420 61.111 0.49 0.00 41.18 4.40
2530 4174 2.125431 GCCCACCATTGCACATGC 60.125 61.111 0.00 0.00 42.50 4.06
2531 4175 1.112950 TATGCCCACCATTGCACATG 58.887 50.000 0.00 0.00 40.88 3.21
2532 4176 1.689813 CATATGCCCACCATTGCACAT 59.310 47.619 0.00 0.00 40.88 3.21
2533 4177 1.112950 CATATGCCCACCATTGCACA 58.887 50.000 0.00 0.00 40.88 4.57
2534 4178 0.390124 CCATATGCCCACCATTGCAC 59.610 55.000 0.00 0.00 40.88 4.57
2535 4179 1.401318 GCCATATGCCCACCATTGCA 61.401 55.000 0.00 0.00 42.52 4.08
2536 4180 1.368579 GCCATATGCCCACCATTGC 59.631 57.895 0.00 0.00 35.34 3.56
2546 4190 1.412079 TTTGTCATGGGGCCATATGC 58.588 50.000 4.39 6.67 34.91 3.14
2547 4191 3.451902 ACTTTTTGTCATGGGGCCATATG 59.548 43.478 4.39 9.85 34.91 1.78
2548 4192 3.723325 ACTTTTTGTCATGGGGCCATAT 58.277 40.909 4.39 0.00 34.91 1.78
2549 4193 3.182887 ACTTTTTGTCATGGGGCCATA 57.817 42.857 4.39 0.00 34.91 2.74
2550 4194 2.028561 ACTTTTTGTCATGGGGCCAT 57.971 45.000 4.39 0.00 37.08 4.40
2551 4195 2.685106 TACTTTTTGTCATGGGGCCA 57.315 45.000 4.39 0.00 0.00 5.36
2552 4196 4.551702 AATTACTTTTTGTCATGGGGCC 57.448 40.909 0.00 0.00 0.00 5.80
2553 4197 5.546526 TCAAATTACTTTTTGTCATGGGGC 58.453 37.500 0.00 0.00 37.73 5.80
2554 4198 6.147656 GCTTCAAATTACTTTTTGTCATGGGG 59.852 38.462 0.00 0.00 37.73 4.96
2555 4199 6.705381 TGCTTCAAATTACTTTTTGTCATGGG 59.295 34.615 0.00 0.00 37.73 4.00
2556 4200 7.712264 TGCTTCAAATTACTTTTTGTCATGG 57.288 32.000 0.00 0.00 37.73 3.66
2557 4201 9.199982 AGATGCTTCAAATTACTTTTTGTCATG 57.800 29.630 2.07 0.00 37.73 3.07
2559 4203 9.677567 GTAGATGCTTCAAATTACTTTTTGTCA 57.322 29.630 2.07 0.00 37.73 3.58
2560 4204 9.677567 TGTAGATGCTTCAAATTACTTTTTGTC 57.322 29.630 2.07 0.00 37.73 3.18
2574 4218 9.466497 AGAGGAAAAATTAATGTAGATGCTTCA 57.534 29.630 2.07 0.00 0.00 3.02
2575 4219 9.943163 GAGAGGAAAAATTAATGTAGATGCTTC 57.057 33.333 0.00 0.00 0.00 3.86
2576 4220 8.907885 GGAGAGGAAAAATTAATGTAGATGCTT 58.092 33.333 0.00 0.00 0.00 3.91
2577 4221 8.055181 TGGAGAGGAAAAATTAATGTAGATGCT 58.945 33.333 0.00 0.00 0.00 3.79
2578 4222 8.225603 TGGAGAGGAAAAATTAATGTAGATGC 57.774 34.615 0.00 0.00 0.00 3.91
2581 4225 8.686334 GCATTGGAGAGGAAAAATTAATGTAGA 58.314 33.333 0.00 0.00 0.00 2.59
2582 4226 8.469200 TGCATTGGAGAGGAAAAATTAATGTAG 58.531 33.333 0.00 0.00 0.00 2.74
2583 4227 8.359875 TGCATTGGAGAGGAAAAATTAATGTA 57.640 30.769 0.00 0.00 0.00 2.29
2584 4228 7.243604 TGCATTGGAGAGGAAAAATTAATGT 57.756 32.000 0.00 0.00 0.00 2.71
2585 4229 7.201582 GCTTGCATTGGAGAGGAAAAATTAATG 60.202 37.037 0.00 0.00 0.00 1.90
2586 4230 6.820152 GCTTGCATTGGAGAGGAAAAATTAAT 59.180 34.615 0.00 0.00 0.00 1.40
2587 4231 6.014327 AGCTTGCATTGGAGAGGAAAAATTAA 60.014 34.615 0.00 0.00 0.00 1.40
2588 4232 5.481473 AGCTTGCATTGGAGAGGAAAAATTA 59.519 36.000 0.00 0.00 0.00 1.40
2589 4233 4.285260 AGCTTGCATTGGAGAGGAAAAATT 59.715 37.500 0.00 0.00 0.00 1.82
2590 4234 3.836562 AGCTTGCATTGGAGAGGAAAAAT 59.163 39.130 0.00 0.00 0.00 1.82
2591 4235 3.233507 AGCTTGCATTGGAGAGGAAAAA 58.766 40.909 0.00 0.00 0.00 1.94
2592 4236 2.880443 AGCTTGCATTGGAGAGGAAAA 58.120 42.857 0.00 0.00 0.00 2.29
2593 4237 2.592102 AGCTTGCATTGGAGAGGAAA 57.408 45.000 0.00 0.00 0.00 3.13
2594 4238 3.200605 TGATAGCTTGCATTGGAGAGGAA 59.799 43.478 0.00 0.00 0.00 3.36
2595 4239 2.773661 TGATAGCTTGCATTGGAGAGGA 59.226 45.455 0.00 0.00 0.00 3.71
2596 4240 2.877168 GTGATAGCTTGCATTGGAGAGG 59.123 50.000 0.00 0.00 0.00 3.69
2597 4241 3.806380 AGTGATAGCTTGCATTGGAGAG 58.194 45.455 0.00 0.00 0.00 3.20
2598 4242 3.920231 AGTGATAGCTTGCATTGGAGA 57.080 42.857 0.00 0.00 0.00 3.71
2599 4243 4.510711 CACTAGTGATAGCTTGCATTGGAG 59.489 45.833 18.45 0.00 0.00 3.86
2600 4244 4.445453 CACTAGTGATAGCTTGCATTGGA 58.555 43.478 18.45 0.00 0.00 3.53
2601 4245 3.562973 CCACTAGTGATAGCTTGCATTGG 59.437 47.826 24.68 0.00 0.00 3.16
2602 4246 3.562973 CCCACTAGTGATAGCTTGCATTG 59.437 47.826 24.68 2.35 0.00 2.82
2603 4247 3.813443 CCCACTAGTGATAGCTTGCATT 58.187 45.455 24.68 0.00 0.00 3.56
2604 4248 2.486191 GCCCACTAGTGATAGCTTGCAT 60.486 50.000 24.68 0.00 0.00 3.96
2605 4249 1.134401 GCCCACTAGTGATAGCTTGCA 60.134 52.381 24.68 0.00 0.00 4.08
2606 4250 1.139853 AGCCCACTAGTGATAGCTTGC 59.860 52.381 24.68 13.31 30.76 4.01
2607 4251 3.118629 TGAAGCCCACTAGTGATAGCTTG 60.119 47.826 33.43 15.75 39.51 4.01
2608 4252 3.107601 TGAAGCCCACTAGTGATAGCTT 58.892 45.455 30.92 30.92 40.91 3.74
2609 4253 2.752030 TGAAGCCCACTAGTGATAGCT 58.248 47.619 24.68 23.04 34.39 3.32
2610 4254 3.760580 ATGAAGCCCACTAGTGATAGC 57.239 47.619 24.68 21.33 0.00 2.97
2611 4255 7.055667 TCTTAATGAAGCCCACTAGTGATAG 57.944 40.000 24.68 13.03 32.21 2.08
2612 4256 7.432148 TTCTTAATGAAGCCCACTAGTGATA 57.568 36.000 24.68 4.07 32.21 2.15
2613 4257 5.957771 TCTTAATGAAGCCCACTAGTGAT 57.042 39.130 24.68 5.56 32.21 3.06
2614 4258 5.755409 TTCTTAATGAAGCCCACTAGTGA 57.245 39.130 24.68 3.09 32.21 3.41
2615 4259 8.506168 TTATTTCTTAATGAAGCCCACTAGTG 57.494 34.615 16.34 16.34 35.89 2.74
2616 4260 9.528489 TTTTATTTCTTAATGAAGCCCACTAGT 57.472 29.630 0.00 0.00 35.89 2.57
2640 4284 9.502091 TGCATGTGTACTAGAGTCTTTATTTTT 57.498 29.630 0.00 0.00 0.00 1.94
2641 4285 9.672673 ATGCATGTGTACTAGAGTCTTTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
2642 4286 9.319143 GATGCATGTGTACTAGAGTCTTTATTT 57.681 33.333 2.46 0.00 0.00 1.40
2643 4287 8.700051 AGATGCATGTGTACTAGAGTCTTTATT 58.300 33.333 2.46 0.00 0.00 1.40
2644 4288 8.243961 AGATGCATGTGTACTAGAGTCTTTAT 57.756 34.615 2.46 0.00 0.00 1.40
2645 4289 7.558081 AGAGATGCATGTGTACTAGAGTCTTTA 59.442 37.037 2.46 0.00 0.00 1.85
2646 4290 6.379703 AGAGATGCATGTGTACTAGAGTCTTT 59.620 38.462 2.46 0.00 0.00 2.52
2647 4291 5.890985 AGAGATGCATGTGTACTAGAGTCTT 59.109 40.000 2.46 0.00 0.00 3.01
2648 4292 5.445069 AGAGATGCATGTGTACTAGAGTCT 58.555 41.667 2.46 0.00 0.00 3.24
2649 4293 5.766150 AGAGATGCATGTGTACTAGAGTC 57.234 43.478 2.46 0.00 0.00 3.36
2650 4294 6.361433 AGTAGAGATGCATGTGTACTAGAGT 58.639 40.000 26.28 7.72 30.07 3.24
2651 4295 6.875948 AGTAGAGATGCATGTGTACTAGAG 57.124 41.667 26.28 0.00 30.07 2.43
2652 4296 7.646548 AAAGTAGAGATGCATGTGTACTAGA 57.353 36.000 27.25 0.00 30.49 2.43
2653 4297 7.976175 TGAAAAGTAGAGATGCATGTGTACTAG 59.024 37.037 27.25 0.00 30.49 2.57
2654 4298 7.759886 GTGAAAAGTAGAGATGCATGTGTACTA 59.240 37.037 27.25 13.62 30.49 1.82
2655 4299 6.591834 GTGAAAAGTAGAGATGCATGTGTACT 59.408 38.462 23.22 23.22 32.62 2.73
2656 4300 6.591834 AGTGAAAAGTAGAGATGCATGTGTAC 59.408 38.462 19.88 19.88 0.00 2.90
2657 4301 6.701340 AGTGAAAAGTAGAGATGCATGTGTA 58.299 36.000 2.46 0.00 0.00 2.90
2658 4302 5.555017 AGTGAAAAGTAGAGATGCATGTGT 58.445 37.500 2.46 0.00 0.00 3.72
2659 4303 5.064452 GGAGTGAAAAGTAGAGATGCATGTG 59.936 44.000 2.46 0.00 0.00 3.21
2660 4304 5.181748 GGAGTGAAAAGTAGAGATGCATGT 58.818 41.667 2.46 0.00 0.00 3.21
2661 4305 5.181009 TGGAGTGAAAAGTAGAGATGCATG 58.819 41.667 2.46 0.00 0.00 4.06
2662 4306 5.426689 TGGAGTGAAAAGTAGAGATGCAT 57.573 39.130 0.00 0.00 0.00 3.96
2663 4307 4.890158 TGGAGTGAAAAGTAGAGATGCA 57.110 40.909 0.00 0.00 0.00 3.96
2664 4308 4.393371 GGTTGGAGTGAAAAGTAGAGATGC 59.607 45.833 0.00 0.00 0.00 3.91
2665 4309 5.799213 AGGTTGGAGTGAAAAGTAGAGATG 58.201 41.667 0.00 0.00 0.00 2.90
2666 4310 6.441088 AAGGTTGGAGTGAAAAGTAGAGAT 57.559 37.500 0.00 0.00 0.00 2.75
2667 4311 5.888982 AAGGTTGGAGTGAAAAGTAGAGA 57.111 39.130 0.00 0.00 0.00 3.10
2668 4312 6.542370 TGAAAAGGTTGGAGTGAAAAGTAGAG 59.458 38.462 0.00 0.00 0.00 2.43
2669 4313 6.419791 TGAAAAGGTTGGAGTGAAAAGTAGA 58.580 36.000 0.00 0.00 0.00 2.59
2670 4314 6.693315 TGAAAAGGTTGGAGTGAAAAGTAG 57.307 37.500 0.00 0.00 0.00 2.57
2671 4315 5.067283 GCTGAAAAGGTTGGAGTGAAAAGTA 59.933 40.000 0.00 0.00 0.00 2.24
2672 4316 4.142160 GCTGAAAAGGTTGGAGTGAAAAGT 60.142 41.667 0.00 0.00 0.00 2.66
2673 4317 4.098501 AGCTGAAAAGGTTGGAGTGAAAAG 59.901 41.667 0.00 0.00 0.00 2.27
2674 4318 4.023291 AGCTGAAAAGGTTGGAGTGAAAA 58.977 39.130 0.00 0.00 0.00 2.29
2675 4319 3.631250 AGCTGAAAAGGTTGGAGTGAAA 58.369 40.909 0.00 0.00 0.00 2.69
2676 4320 3.297134 AGCTGAAAAGGTTGGAGTGAA 57.703 42.857 0.00 0.00 0.00 3.18
2677 4321 3.297134 AAGCTGAAAAGGTTGGAGTGA 57.703 42.857 0.00 0.00 0.00 3.41
2678 4322 4.114794 CAAAAGCTGAAAAGGTTGGAGTG 58.885 43.478 0.00 0.00 0.00 3.51
2679 4323 3.769300 ACAAAAGCTGAAAAGGTTGGAGT 59.231 39.130 0.00 0.00 0.00 3.85
2680 4324 4.142182 TGACAAAAGCTGAAAAGGTTGGAG 60.142 41.667 0.00 0.00 0.00 3.86
2681 4325 3.766591 TGACAAAAGCTGAAAAGGTTGGA 59.233 39.130 0.00 0.00 0.00 3.53
2682 4326 4.122143 TGACAAAAGCTGAAAAGGTTGG 57.878 40.909 0.00 0.00 0.00 3.77
2683 4327 5.006941 CCAATGACAAAAGCTGAAAAGGTTG 59.993 40.000 0.00 0.00 0.00 3.77
2684 4328 5.104982 TCCAATGACAAAAGCTGAAAAGGTT 60.105 36.000 0.00 0.00 0.00 3.50
2685 4329 4.405358 TCCAATGACAAAAGCTGAAAAGGT 59.595 37.500 0.00 0.00 0.00 3.50
2686 4330 4.746611 GTCCAATGACAAAAGCTGAAAAGG 59.253 41.667 0.00 0.00 41.37 3.11
2687 4331 4.746611 GGTCCAATGACAAAAGCTGAAAAG 59.253 41.667 0.00 0.00 43.65 2.27
2688 4332 4.161189 TGGTCCAATGACAAAAGCTGAAAA 59.839 37.500 0.00 0.00 43.65 2.29
2689 4333 3.703556 TGGTCCAATGACAAAAGCTGAAA 59.296 39.130 0.00 0.00 43.65 2.69
2690 4334 3.295093 TGGTCCAATGACAAAAGCTGAA 58.705 40.909 0.00 0.00 43.65 3.02
2691 4335 2.942804 TGGTCCAATGACAAAAGCTGA 58.057 42.857 0.00 0.00 43.65 4.26
2692 4336 3.947910 ATGGTCCAATGACAAAAGCTG 57.052 42.857 0.00 0.00 43.65 4.24
2693 4337 4.666512 AGTATGGTCCAATGACAAAAGCT 58.333 39.130 0.00 0.00 43.65 3.74
2694 4338 5.391312 AAGTATGGTCCAATGACAAAAGC 57.609 39.130 0.00 0.00 43.65 3.51
2695 4339 8.143835 AGAAAAAGTATGGTCCAATGACAAAAG 58.856 33.333 0.00 0.00 43.65 2.27
2696 4340 8.017418 AGAAAAAGTATGGTCCAATGACAAAA 57.983 30.769 0.00 0.00 43.65 2.44
2697 4341 7.505585 AGAGAAAAAGTATGGTCCAATGACAAA 59.494 33.333 0.00 0.00 43.65 2.83
2698 4342 7.004086 AGAGAAAAAGTATGGTCCAATGACAA 58.996 34.615 0.00 0.00 43.65 3.18
2699 4343 6.542821 AGAGAAAAAGTATGGTCCAATGACA 58.457 36.000 0.00 0.00 43.65 3.58
2700 4344 7.174946 TGAAGAGAAAAAGTATGGTCCAATGAC 59.825 37.037 0.00 0.00 40.98 3.06
2701 4345 7.230747 TGAAGAGAAAAAGTATGGTCCAATGA 58.769 34.615 0.00 0.00 0.00 2.57
2702 4346 7.452880 TGAAGAGAAAAAGTATGGTCCAATG 57.547 36.000 0.00 0.00 0.00 2.82
2703 4347 7.309438 GCTTGAAGAGAAAAAGTATGGTCCAAT 60.309 37.037 0.00 0.00 0.00 3.16
2704 4348 6.016276 GCTTGAAGAGAAAAAGTATGGTCCAA 60.016 38.462 0.00 0.00 0.00 3.53
2705 4349 5.473504 GCTTGAAGAGAAAAAGTATGGTCCA 59.526 40.000 0.00 0.00 0.00 4.02
2706 4350 5.473504 TGCTTGAAGAGAAAAAGTATGGTCC 59.526 40.000 0.00 0.00 0.00 4.46
2707 4351 6.374578 GTGCTTGAAGAGAAAAAGTATGGTC 58.625 40.000 0.00 0.00 0.00 4.02
2708 4352 5.241728 GGTGCTTGAAGAGAAAAAGTATGGT 59.758 40.000 0.00 0.00 0.00 3.55
2709 4353 5.335976 GGGTGCTTGAAGAGAAAAAGTATGG 60.336 44.000 0.00 0.00 0.00 2.74
2710 4354 5.617751 CGGGTGCTTGAAGAGAAAAAGTATG 60.618 44.000 0.00 0.00 0.00 2.39
2711 4355 4.455877 CGGGTGCTTGAAGAGAAAAAGTAT 59.544 41.667 0.00 0.00 0.00 2.12
2712 4356 3.813166 CGGGTGCTTGAAGAGAAAAAGTA 59.187 43.478 0.00 0.00 0.00 2.24
2713 4357 2.618709 CGGGTGCTTGAAGAGAAAAAGT 59.381 45.455 0.00 0.00 0.00 2.66
2714 4358 2.605580 GCGGGTGCTTGAAGAGAAAAAG 60.606 50.000 0.00 0.00 38.39 2.27
2715 4359 1.336755 GCGGGTGCTTGAAGAGAAAAA 59.663 47.619 0.00 0.00 38.39 1.94
2716 4360 0.951558 GCGGGTGCTTGAAGAGAAAA 59.048 50.000 0.00 0.00 38.39 2.29
2717 4361 0.889186 GGCGGGTGCTTGAAGAGAAA 60.889 55.000 0.00 0.00 42.25 2.52
2718 4362 1.302511 GGCGGGTGCTTGAAGAGAA 60.303 57.895 0.00 0.00 42.25 2.87
2719 4363 2.172483 GAGGCGGGTGCTTGAAGAGA 62.172 60.000 0.00 0.00 42.25 3.10
2720 4364 1.743252 GAGGCGGGTGCTTGAAGAG 60.743 63.158 0.00 0.00 42.25 2.85
2721 4365 2.347490 GAGGCGGGTGCTTGAAGA 59.653 61.111 0.00 0.00 42.25 2.87
2722 4366 2.747855 GGAGGCGGGTGCTTGAAG 60.748 66.667 0.00 0.00 42.25 3.02
2723 4367 3.249189 AGGAGGCGGGTGCTTGAA 61.249 61.111 0.00 0.00 42.25 2.69
2724 4368 4.020617 CAGGAGGCGGGTGCTTGA 62.021 66.667 0.00 0.00 42.25 3.02
2725 4369 3.551496 TTCAGGAGGCGGGTGCTTG 62.551 63.158 0.00 0.00 42.25 4.01
2726 4370 3.249189 TTCAGGAGGCGGGTGCTT 61.249 61.111 0.00 0.00 42.25 3.91
2727 4371 3.710722 CTTCAGGAGGCGGGTGCT 61.711 66.667 0.00 0.00 42.25 4.40
2728 4372 3.672295 CTCTTCAGGAGGCGGGTGC 62.672 68.421 0.00 0.00 38.35 5.01
2729 4373 2.581354 CTCTTCAGGAGGCGGGTG 59.419 66.667 0.00 0.00 38.35 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.