Multiple sequence alignment - TraesCS3B01G389200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G389200 chr3B 100.000 4630 0 0 1 4630 612407676 612412305 0.000000e+00 8551
1 TraesCS3B01G389200 chr3B 87.794 680 73 8 4 679 392795575 392794902 0.000000e+00 787
2 TraesCS3B01G389200 chr3B 91.250 80 3 2 3813 3888 62010528 62010449 6.340000e-19 106
3 TraesCS3B01G389200 chr3B 100.000 57 0 0 3815 3871 532666318 532666374 6.340000e-19 106
4 TraesCS3B01G389200 chr3B 98.305 59 1 0 3813 3871 560713417 560713475 2.280000e-18 104
5 TraesCS3B01G389200 chr3B 96.721 61 2 0 3811 3871 190911765 190911705 8.200000e-18 102
6 TraesCS3B01G389200 chr3D 85.264 2029 174 68 1838 3817 461662688 461664640 0.000000e+00 1975
7 TraesCS3B01G389200 chr3D 91.300 1069 63 14 734 1789 461661631 461662682 0.000000e+00 1432
8 TraesCS3B01G389200 chr3D 93.398 515 14 3 4129 4630 461665373 461665880 0.000000e+00 745
9 TraesCS3B01G389200 chr3D 82.857 490 72 9 3238 3724 568036214 568036694 3.310000e-116 429
10 TraesCS3B01G389200 chr3D 98.378 185 3 0 3886 4070 461664638 461664822 4.470000e-85 326
11 TraesCS3B01G389200 chr3D 79.819 332 48 13 3263 3582 569804420 569804096 1.680000e-54 224
12 TraesCS3B01G389200 chr3A 90.422 1138 72 16 676 1796 603925512 603926629 0.000000e+00 1463
13 TraesCS3B01G389200 chr3A 89.900 703 34 14 3126 3817 603927931 603928607 0.000000e+00 870
14 TraesCS3B01G389200 chr3A 93.764 433 13 2 4211 4630 603930478 603930909 5.050000e-179 638
15 TraesCS3B01G389200 chr3A 83.231 489 72 7 3238 3724 701361747 701362227 1.530000e-119 440
16 TraesCS3B01G389200 chr3A 87.664 381 35 8 2225 2595 603926967 603927345 2.560000e-117 433
17 TraesCS3B01G389200 chr3A 91.339 254 20 2 2644 2897 603927625 603927876 3.430000e-91 346
18 TraesCS3B01G389200 chr3A 96.216 185 7 0 3886 4070 603928605 603928789 2.090000e-78 303
19 TraesCS3B01G389200 chr3A 78.769 325 33 18 1838 2153 603926636 603926933 7.910000e-43 185
20 TraesCS3B01G389200 chr2B 87.977 682 76 6 1 679 402254964 402254286 0.000000e+00 800
21 TraesCS3B01G389200 chr2A 87.941 680 79 3 1 679 628634765 628634088 0.000000e+00 798
22 TraesCS3B01G389200 chr2A 89.109 101 11 0 2903 3003 650104961 650105061 4.860000e-25 126
23 TraesCS3B01G389200 chr2A 84.348 115 17 1 2896 3010 469789681 469789794 1.360000e-20 111
24 TraesCS3B01G389200 chr4D 87.351 672 81 4 9 679 448180919 448180251 0.000000e+00 767
25 TraesCS3B01G389200 chr4D 87.110 481 59 3 200 679 465348686 465349164 4.070000e-150 542
26 TraesCS3B01G389200 chr7A 86.912 680 86 3 1 679 638520427 638519750 0.000000e+00 760
27 TraesCS3B01G389200 chr7A 84.853 680 100 3 1 679 514976863 514976186 0.000000e+00 682
28 TraesCS3B01G389200 chr5A 85.147 680 98 3 1 679 665684230 665683553 0.000000e+00 693
29 TraesCS3B01G389200 chr6D 84.296 675 103 3 6 679 10901215 10901887 0.000000e+00 656
30 TraesCS3B01G389200 chr6D 86.916 107 14 0 2896 3002 302113644 302113750 2.260000e-23 121
31 TraesCS3B01G389200 chr6D 83.898 118 17 2 2896 3012 391925985 391925869 1.360000e-20 111
32 TraesCS3B01G389200 chr6D 98.246 57 1 0 3815 3871 397360223 397360167 2.950000e-17 100
33 TraesCS3B01G389200 chrUn 82.169 415 61 7 3311 3724 41006514 41006112 1.230000e-90 344
34 TraesCS3B01G389200 chrUn 82.169 415 61 7 3311 3724 307830922 307831324 1.230000e-90 344
35 TraesCS3B01G389200 chrUn 83.282 323 44 9 3302 3620 40928750 40928434 5.860000e-74 289
36 TraesCS3B01G389200 chr1B 82.692 364 62 1 1 364 43050777 43051139 5.780000e-84 322
37 TraesCS3B01G389200 chr2D 86.957 115 14 1 2888 3002 473292312 473292199 1.350000e-25 128
38 TraesCS3B01G389200 chr2D 85.217 115 16 1 2896 3010 351973350 351973463 2.930000e-22 117
39 TraesCS3B01G389200 chr5B 87.156 109 12 2 2888 2996 415994359 415994253 6.290000e-24 122
40 TraesCS3B01G389200 chr4A 88.119 101 12 0 2896 2996 578555238 578555138 2.260000e-23 121
41 TraesCS3B01G389200 chr1A 85.981 107 15 0 2896 3002 11576217 11576111 1.050000e-21 115
42 TraesCS3B01G389200 chr1A 98.305 59 1 0 3813 3871 495708021 495707963 2.280000e-18 104
43 TraesCS3B01G389200 chr6B 100.000 59 0 0 3813 3871 14779894 14779952 4.900000e-20 110
44 TraesCS3B01G389200 chr6B 100.000 57 0 0 3815 3871 285804313 285804257 6.340000e-19 106
45 TraesCS3B01G389200 chr6B 100.000 56 0 0 3816 3871 226867062 226867007 2.280000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G389200 chr3B 612407676 612412305 4629 False 8551.000000 8551 100.000000 1 4630 1 chr3B.!!$F3 4629
1 TraesCS3B01G389200 chr3B 392794902 392795575 673 True 787.000000 787 87.794000 4 679 1 chr3B.!!$R3 675
2 TraesCS3B01G389200 chr3D 461661631 461665880 4249 False 1119.500000 1975 92.085000 734 4630 4 chr3D.!!$F2 3896
3 TraesCS3B01G389200 chr3A 603925512 603930909 5397 False 605.428571 1463 89.724857 676 4630 7 chr3A.!!$F2 3954
4 TraesCS3B01G389200 chr2B 402254286 402254964 678 True 800.000000 800 87.977000 1 679 1 chr2B.!!$R1 678
5 TraesCS3B01G389200 chr2A 628634088 628634765 677 True 798.000000 798 87.941000 1 679 1 chr2A.!!$R1 678
6 TraesCS3B01G389200 chr4D 448180251 448180919 668 True 767.000000 767 87.351000 9 679 1 chr4D.!!$R1 670
7 TraesCS3B01G389200 chr7A 638519750 638520427 677 True 760.000000 760 86.912000 1 679 1 chr7A.!!$R2 678
8 TraesCS3B01G389200 chr7A 514976186 514976863 677 True 682.000000 682 84.853000 1 679 1 chr7A.!!$R1 678
9 TraesCS3B01G389200 chr5A 665683553 665684230 677 True 693.000000 693 85.147000 1 679 1 chr5A.!!$R1 678
10 TraesCS3B01G389200 chr6D 10901215 10901887 672 False 656.000000 656 84.296000 6 679 1 chr6D.!!$F1 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 678 0.179062 CTCTGGATTTGAGGAGGCCG 60.179 60.0 0.0 0.0 0.00 6.13 F
1307 1319 0.179119 GCGTGGCCGTCAAGTACTAT 60.179 55.0 0.0 0.0 36.15 2.12 F
1886 1907 0.251165 ATGGGAAACGGAACACCCTG 60.251 55.0 0.0 0.0 42.49 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1572 0.036858 GGTTGGCAGAGAGTGAGGTC 60.037 60.0 0.00 0.00 0.0 3.85 R
2961 3278 0.036388 ATTGTCGCTCCAACGGATGT 60.036 50.0 0.00 0.00 0.0 3.06 R
3871 4200 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.0 13.34 13.34 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 4.759183 AGTTCAAGATCTCTGAAACCAAGC 59.241 41.667 16.73 7.95 0.00 4.01
78 79 1.065854 AGATCTCTGAAACCAAGCCCG 60.066 52.381 0.00 0.00 0.00 6.13
81 82 2.282462 CTGAAACCAAGCCCGCCT 60.282 61.111 0.00 0.00 0.00 5.52
225 227 7.755373 GGGAGCTTAAAACATGACATAGAAAAC 59.245 37.037 0.00 0.00 0.00 2.43
249 251 1.891919 GACCACTTGCGCCACTGAA 60.892 57.895 4.18 0.00 0.00 3.02
271 273 8.809159 TGAATTGATCAAAATTTCTTTACGCA 57.191 26.923 13.09 0.00 34.30 5.24
275 277 6.964908 TGATCAAAATTTCTTTACGCACAGA 58.035 32.000 0.00 0.00 0.00 3.41
303 305 2.647299 TGCTTTCTCAATCCACCCCTTA 59.353 45.455 0.00 0.00 0.00 2.69
345 347 3.467803 CCTTAGATACTTGAAAGCCCCG 58.532 50.000 0.00 0.00 0.00 5.73
346 348 3.134081 CCTTAGATACTTGAAAGCCCCGA 59.866 47.826 0.00 0.00 0.00 5.14
358 360 5.318630 TGAAAGCCCCGATTTTACTAGTTT 58.681 37.500 0.00 0.00 0.00 2.66
364 366 6.541278 AGCCCCGATTTTACTAGTTTCAATAC 59.459 38.462 0.00 0.00 0.00 1.89
376 378 7.573710 ACTAGTTTCAATACCAGATGGCATTA 58.426 34.615 0.00 0.00 39.32 1.90
381 383 4.079500 TCAATACCAGATGGCATTACCCAA 60.080 41.667 0.00 0.00 38.61 4.12
422 424 9.760660 GAGTTTTAGTTTGCACATTGAGTATAG 57.239 33.333 0.00 0.00 0.00 1.31
427 429 7.921786 AGTTTGCACATTGAGTATAGCTTTA 57.078 32.000 0.00 0.00 0.00 1.85
432 434 6.884295 TGCACATTGAGTATAGCTTTAACCTT 59.116 34.615 0.00 0.00 0.00 3.50
434 436 7.467403 GCACATTGAGTATAGCTTTAACCTTCC 60.467 40.741 0.00 0.00 0.00 3.46
440 442 0.690762 AGCTTTAACCTTCCGCCTGA 59.309 50.000 0.00 0.00 0.00 3.86
447 449 1.867363 ACCTTCCGCCTGATAGACTT 58.133 50.000 0.00 0.00 0.00 3.01
500 502 6.884836 GGACTTATTACTGTTGATCCTTTGGT 59.115 38.462 0.00 0.00 0.00 3.67
507 509 4.141390 ACTGTTGATCCTTTGGTCTGAAGT 60.141 41.667 0.00 0.00 0.00 3.01
581 584 3.640967 TGCCTTGAAAACAACAGGCTATT 59.359 39.130 10.29 0.00 42.41 1.73
584 587 5.807011 GCCTTGAAAACAACAGGCTATTATG 59.193 40.000 1.64 0.00 39.18 1.90
596 599 9.585099 CAACAGGCTATTATGAGCAAATAAAAA 57.415 29.630 0.00 0.00 44.76 1.94
600 603 9.189156 AGGCTATTATGAGCAAATAAAAAGTGA 57.811 29.630 0.00 0.00 44.76 3.41
638 641 1.026718 GGAGCCACCTGAATTCCACG 61.027 60.000 2.27 0.00 35.41 4.94
675 678 0.179062 CTCTGGATTTGAGGAGGCCG 60.179 60.000 0.00 0.00 0.00 6.13
676 679 0.909610 TCTGGATTTGAGGAGGCCGT 60.910 55.000 0.00 0.00 0.00 5.68
677 680 0.745845 CTGGATTTGAGGAGGCCGTG 60.746 60.000 0.00 0.00 0.00 4.94
678 681 1.198094 TGGATTTGAGGAGGCCGTGA 61.198 55.000 0.00 0.00 0.00 4.35
679 682 0.744771 GGATTTGAGGAGGCCGTGAC 60.745 60.000 0.00 0.00 0.00 3.67
680 683 1.079127 ATTTGAGGAGGCCGTGACG 60.079 57.895 0.00 0.00 0.00 4.35
681 684 3.876589 TTTGAGGAGGCCGTGACGC 62.877 63.158 0.00 0.00 0.00 5.19
694 697 4.427661 GACGCGCACTCTCAGCCT 62.428 66.667 5.73 0.00 0.00 4.58
697 700 2.202810 GCGCACTCTCAGCCTACC 60.203 66.667 0.30 0.00 0.00 3.18
702 705 2.716217 GCACTCTCAGCCTACCAAAAT 58.284 47.619 0.00 0.00 0.00 1.82
836 842 4.829064 TCTCACACGAAAATGAAAAGGG 57.171 40.909 0.00 0.00 0.00 3.95
889 896 6.330278 TCGTTGTCATTATTGATCTTCGTCT 58.670 36.000 0.00 0.00 33.56 4.18
1120 1131 4.484236 CAAAATCAAGTATTTCTGGCGCA 58.516 39.130 10.83 0.00 36.76 6.09
1121 1132 4.782019 AAATCAAGTATTTCTGGCGCAA 57.218 36.364 10.83 0.00 32.00 4.85
1139 1150 3.242220 CGCAATTTTCATCTCTGTCTCGG 60.242 47.826 0.00 0.00 0.00 4.63
1147 1158 1.758936 TCTCTGTCTCGGCGGAATTA 58.241 50.000 7.21 0.00 0.00 1.40
1151 1162 1.226888 GTCTCGGCGGAATTAGCGT 60.227 57.895 7.21 0.00 35.00 5.07
1170 1181 2.414957 CGTACTGCGATGTGTTACTCCA 60.415 50.000 0.00 0.00 44.77 3.86
1307 1319 0.179119 GCGTGGCCGTCAAGTACTAT 60.179 55.000 0.00 0.00 36.15 2.12
1313 1325 1.269621 GCCGTCAAGTACTATGCCGAT 60.270 52.381 0.00 0.00 0.00 4.18
1430 1442 5.183228 TCTTGAAAGACGAGGAAAGTGTTT 58.817 37.500 0.00 0.00 37.71 2.83
1431 1443 5.293569 TCTTGAAAGACGAGGAAAGTGTTTC 59.706 40.000 10.66 10.66 45.93 2.78
1500 1513 4.536090 AGTTTACATTCTCCTCATGGACCA 59.464 41.667 0.00 0.00 37.46 4.02
1501 1514 5.014123 AGTTTACATTCTCCTCATGGACCAA 59.986 40.000 0.00 0.00 37.46 3.67
1503 1516 4.598036 ACATTCTCCTCATGGACCAAAT 57.402 40.909 0.00 0.00 37.46 2.32
1504 1517 4.275810 ACATTCTCCTCATGGACCAAATG 58.724 43.478 0.00 4.75 37.46 2.32
1505 1518 4.264083 ACATTCTCCTCATGGACCAAATGT 60.264 41.667 11.12 11.12 38.59 2.71
1506 1519 3.354948 TCTCCTCATGGACCAAATGTG 57.645 47.619 0.00 0.00 37.46 3.21
1507 1520 2.912295 TCTCCTCATGGACCAAATGTGA 59.088 45.455 0.00 0.00 37.46 3.58
1508 1521 3.330405 TCTCCTCATGGACCAAATGTGAA 59.670 43.478 0.00 0.00 37.46 3.18
1509 1522 4.081406 CTCCTCATGGACCAAATGTGAAA 58.919 43.478 0.00 0.00 37.46 2.69
1510 1523 4.676109 TCCTCATGGACCAAATGTGAAAT 58.324 39.130 0.00 0.00 37.46 2.17
1511 1524 4.463539 TCCTCATGGACCAAATGTGAAATG 59.536 41.667 0.00 0.00 37.46 2.32
1512 1525 4.221262 CCTCATGGACCAAATGTGAAATGT 59.779 41.667 0.00 0.00 34.57 2.71
1513 1526 5.136816 TCATGGACCAAATGTGAAATGTG 57.863 39.130 0.00 0.00 0.00 3.21
1514 1527 3.383620 TGGACCAAATGTGAAATGTGC 57.616 42.857 0.00 0.00 0.00 4.57
1519 1532 4.497300 ACCAAATGTGAAATGTGCATAGC 58.503 39.130 0.00 0.00 0.00 2.97
1532 1545 3.187637 TGTGCATAGCGTGTAGAAAAACC 59.812 43.478 0.00 0.00 0.00 3.27
1542 1555 3.500680 GTGTAGAAAAACCGCCATCTTCA 59.499 43.478 0.00 0.00 0.00 3.02
1568 1581 5.172205 GGAACACTGATTAAGACCTCACTC 58.828 45.833 0.00 0.00 0.00 3.51
1591 1604 0.614697 GCCAACCAAATGGGCCTAGT 60.615 55.000 4.53 0.00 41.90 2.57
1597 1610 4.120946 ACCAAATGGGCCTAGTTGTTTA 57.879 40.909 24.89 0.00 42.05 2.01
1652 1665 4.503910 TGCAGTACATTCATCAGGTGTAC 58.496 43.478 6.76 6.76 45.22 2.90
1670 1683 1.813513 ACCTTCTTGTTGGAGCATCG 58.186 50.000 0.00 0.00 34.37 3.84
1675 1688 0.957395 CTTGTTGGAGCATCGTGCCT 60.957 55.000 6.39 0.00 46.52 4.75
1718 1731 1.108727 TCCCTTGTTGCCTTGCTGTG 61.109 55.000 0.00 0.00 0.00 3.66
1736 1757 4.635765 GCTGTGTTGAACAAGGATGCTATA 59.364 41.667 0.00 0.00 38.67 1.31
1745 1766 8.347004 TGAACAAGGATGCTATAATTTTGTCA 57.653 30.769 0.00 0.00 0.00 3.58
1752 1773 8.000709 AGGATGCTATAATTTTGTCATCTGGAA 58.999 33.333 0.00 0.00 33.03 3.53
1798 1819 4.183539 GCATGAGTATTGCGTGTTACTC 57.816 45.455 0.00 11.47 42.96 2.59
1800 1821 4.433615 CATGAGTATTGCGTGTTACTCCT 58.566 43.478 14.17 5.89 42.31 3.69
1802 1823 4.491676 TGAGTATTGCGTGTTACTCCTTC 58.508 43.478 14.17 0.00 42.31 3.46
1803 1824 4.219944 TGAGTATTGCGTGTTACTCCTTCT 59.780 41.667 14.17 0.00 42.31 2.85
1804 1825 4.495422 AGTATTGCGTGTTACTCCTTCTG 58.505 43.478 0.00 0.00 0.00 3.02
1805 1826 2.902705 TTGCGTGTTACTCCTTCTGT 57.097 45.000 0.00 0.00 0.00 3.41
1806 1827 4.530710 ATTGCGTGTTACTCCTTCTGTA 57.469 40.909 0.00 0.00 0.00 2.74
1807 1828 4.325028 TTGCGTGTTACTCCTTCTGTAA 57.675 40.909 0.00 0.00 0.00 2.41
1808 1829 4.325028 TGCGTGTTACTCCTTCTGTAAA 57.675 40.909 0.00 0.00 32.58 2.01
1809 1830 4.304110 TGCGTGTTACTCCTTCTGTAAAG 58.696 43.478 0.00 0.00 32.58 1.85
1810 1831 4.038282 TGCGTGTTACTCCTTCTGTAAAGA 59.962 41.667 0.00 0.00 32.58 2.52
1811 1832 4.986659 GCGTGTTACTCCTTCTGTAAAGAA 59.013 41.667 0.00 0.00 32.58 2.52
1812 1833 5.464389 GCGTGTTACTCCTTCTGTAAAGAAA 59.536 40.000 0.00 0.00 32.58 2.52
1813 1834 6.147328 GCGTGTTACTCCTTCTGTAAAGAAAT 59.853 38.462 0.00 0.00 32.58 2.17
1814 1835 7.330208 GCGTGTTACTCCTTCTGTAAAGAAATA 59.670 37.037 0.00 0.00 32.58 1.40
1815 1836 9.199982 CGTGTTACTCCTTCTGTAAAGAAATAA 57.800 33.333 0.00 0.00 32.58 1.40
1868 1889 7.283329 AGAAAAGAGTCTGTTACAACCAGAAT 58.717 34.615 0.00 0.00 0.00 2.40
1869 1890 6.867662 AAAGAGTCTGTTACAACCAGAATG 57.132 37.500 0.00 0.00 0.00 2.67
1886 1907 0.251165 ATGGGAAACGGAACACCCTG 60.251 55.000 0.00 0.00 42.49 4.45
1895 1916 2.034066 AACACCCTGGCCATCACG 59.966 61.111 5.51 0.00 0.00 4.35
1904 1925 1.737793 CTGGCCATCACGAAGTAAACC 59.262 52.381 5.51 0.00 41.61 3.27
1921 1942 4.338379 AAACCACAGAACTACTCCTGAC 57.662 45.455 0.00 0.00 34.65 3.51
1926 1947 4.950475 CCACAGAACTACTCCTGACTATCA 59.050 45.833 0.00 0.00 34.65 2.15
1931 1952 8.908903 ACAGAACTACTCCTGACTATCAAATAG 58.091 37.037 0.00 0.00 35.27 1.73
1933 1954 9.702253 AGAACTACTCCTGACTATCAAATAGAA 57.298 33.333 1.11 0.00 36.68 2.10
1950 1971 1.076024 AGAACACCACCCTGCATCATT 59.924 47.619 0.00 0.00 0.00 2.57
1970 1998 1.140452 TGATCAAGCTGCTGGATCTCC 59.860 52.381 34.92 18.80 40.55 3.71
1977 2005 1.305297 TGCTGGATCTCCCACTCGT 60.305 57.895 0.00 0.00 40.82 4.18
1999 2027 0.677731 CCAATGTCATCGGCCACTGT 60.678 55.000 2.24 0.00 0.00 3.55
2000 2028 0.729116 CAATGTCATCGGCCACTGTC 59.271 55.000 2.24 0.00 0.00 3.51
2016 2044 2.022129 GTCGCAGTGGACCAAGTCG 61.022 63.158 0.00 0.00 32.65 4.18
2020 2048 1.671850 CGCAGTGGACCAAGTCGTATT 60.672 52.381 0.00 0.00 32.65 1.89
2030 2058 4.894784 ACCAAGTCGTATTGATGAACACT 58.105 39.130 4.30 0.00 31.55 3.55
2031 2059 4.929808 ACCAAGTCGTATTGATGAACACTC 59.070 41.667 4.30 0.00 31.55 3.51
2032 2060 4.929211 CCAAGTCGTATTGATGAACACTCA 59.071 41.667 4.30 0.00 35.56 3.41
2033 2061 5.582269 CCAAGTCGTATTGATGAACACTCAT 59.418 40.000 4.30 0.00 45.34 2.90
2034 2062 6.456047 CCAAGTCGTATTGATGAACACTCATG 60.456 42.308 4.30 0.00 42.60 3.07
2035 2063 5.724328 AGTCGTATTGATGAACACTCATGT 58.276 37.500 0.00 0.00 42.60 3.21
2036 2064 5.807520 AGTCGTATTGATGAACACTCATGTC 59.192 40.000 0.00 0.00 42.60 3.06
2037 2065 5.005779 GTCGTATTGATGAACACTCATGTCC 59.994 44.000 0.00 0.00 42.60 4.02
2038 2066 4.869861 CGTATTGATGAACACTCATGTCCA 59.130 41.667 0.00 0.00 42.60 4.02
2039 2067 5.351189 CGTATTGATGAACACTCATGTCCAA 59.649 40.000 0.00 0.00 42.60 3.53
2040 2068 5.633830 ATTGATGAACACTCATGTCCAAC 57.366 39.130 0.00 0.00 42.60 3.77
2041 2069 3.066380 TGATGAACACTCATGTCCAACG 58.934 45.455 0.00 0.00 42.60 4.10
2042 2070 2.613026 TGAACACTCATGTCCAACGT 57.387 45.000 0.00 0.00 38.45 3.99
2043 2071 2.479837 TGAACACTCATGTCCAACGTC 58.520 47.619 0.00 0.00 38.45 4.34
2044 2072 2.159028 TGAACACTCATGTCCAACGTCA 60.159 45.455 0.00 0.00 38.45 4.35
2045 2073 2.839486 ACACTCATGTCCAACGTCAT 57.161 45.000 0.00 0.00 31.55 3.06
2046 2074 2.688507 ACACTCATGTCCAACGTCATC 58.311 47.619 0.00 0.00 31.55 2.92
2047 2075 1.655597 CACTCATGTCCAACGTCATCG 59.344 52.381 0.00 0.00 43.34 3.84
2048 2076 1.280982 CTCATGTCCAACGTCATCGG 58.719 55.000 0.00 0.00 41.85 4.18
2049 2077 0.739462 TCATGTCCAACGTCATCGGC 60.739 55.000 0.00 0.00 41.85 5.54
2050 2078 1.449601 ATGTCCAACGTCATCGGCC 60.450 57.895 0.00 0.00 41.85 6.13
2051 2079 2.047655 GTCCAACGTCATCGGCCA 60.048 61.111 2.24 0.00 41.85 5.36
2052 2080 2.047655 TCCAACGTCATCGGCCAC 60.048 61.111 2.24 0.00 41.85 5.01
2053 2081 2.047274 CCAACGTCATCGGCCACT 60.047 61.111 2.24 0.00 41.85 4.00
2054 2082 2.100631 CCAACGTCATCGGCCACTC 61.101 63.158 2.24 0.00 41.85 3.51
2055 2083 2.126071 AACGTCATCGGCCACTCG 60.126 61.111 2.24 2.23 41.85 4.18
2102 2131 5.165961 TGTAATCTTGTCTTGCTAGGCTT 57.834 39.130 0.64 0.00 0.00 4.35
2107 2136 4.822026 TCTTGTCTTGCTAGGCTTAGTTC 58.178 43.478 4.63 0.00 0.00 3.01
2148 2177 6.299805 TCAGGTTTCACTGCAGAGTATTAT 57.700 37.500 23.35 0.00 38.36 1.28
2221 2291 7.834068 TTCTGATAAAAGACTCTGTATGCAC 57.166 36.000 0.00 0.00 0.00 4.57
2222 2292 6.341316 TCTGATAAAAGACTCTGTATGCACC 58.659 40.000 0.00 0.00 0.00 5.01
2223 2293 6.048732 TGATAAAAGACTCTGTATGCACCA 57.951 37.500 0.00 0.00 0.00 4.17
2268 2344 8.785329 TGCTCGGCATCATTTTATATGTATTA 57.215 30.769 0.00 0.00 31.71 0.98
2295 2371 9.256477 CCTTTTCTTGGGTAAACATTAGTTTTC 57.744 33.333 0.00 0.00 45.32 2.29
2335 2411 9.766277 GCTCTTATAGTTTTGATGAGAAAACAG 57.234 33.333 10.56 1.31 44.77 3.16
2392 2476 6.504398 TCTGTTATAGTCGTCCAGCTATTTG 58.496 40.000 0.00 0.00 0.00 2.32
2395 2479 1.726853 AGTCGTCCAGCTATTTGCAC 58.273 50.000 0.00 0.00 45.94 4.57
2397 2481 0.613260 TCGTCCAGCTATTTGCACCT 59.387 50.000 0.00 0.00 45.94 4.00
2443 2529 2.749076 TGCAGCTGATGTGGTAATGTTC 59.251 45.455 20.43 0.00 0.00 3.18
2545 2631 1.919240 TAGCGTCAGTTCTTCAGGGA 58.081 50.000 0.00 0.00 0.00 4.20
2577 2663 2.746362 CTGTTGGCATTCTTCTCAGGTC 59.254 50.000 0.00 0.00 0.00 3.85
2579 2665 0.620556 TGGCATTCTTCTCAGGTCCC 59.379 55.000 0.00 0.00 0.00 4.46
2591 2677 1.000896 AGGTCCCGCAAATCCCTTG 60.001 57.895 0.00 0.00 38.15 3.61
2605 2691 6.756542 GCAAATCCCTTGTATTGTGGTTTATC 59.243 38.462 0.00 0.00 37.36 1.75
2606 2692 7.264947 CAAATCCCTTGTATTGTGGTTTATCC 58.735 38.462 0.00 0.00 0.00 2.59
2607 2693 5.789574 TCCCTTGTATTGTGGTTTATCCT 57.210 39.130 0.00 0.00 37.07 3.24
2631 2717 3.367703 CCTCCATGTTGCCAGATTGTTTC 60.368 47.826 0.00 0.00 0.00 2.78
2636 2722 3.565307 TGTTGCCAGATTGTTTCCTCTT 58.435 40.909 0.00 0.00 0.00 2.85
2638 2724 1.888512 TGCCAGATTGTTTCCTCTTGC 59.111 47.619 0.00 0.00 32.37 4.01
2642 2728 4.553323 CCAGATTGTTTCCTCTTGCTTTG 58.447 43.478 0.00 0.00 0.00 2.77
2651 2968 6.183360 TGTTTCCTCTTGCTTTGCTAATCAAA 60.183 34.615 0.00 0.00 42.01 2.69
2760 3077 5.520748 AGTTGTTGATGGAGGGTAATTCT 57.479 39.130 0.00 0.00 0.00 2.40
2786 3103 5.563592 TGCTTCCACATGCTATTATGCTAT 58.436 37.500 0.00 0.00 0.00 2.97
2787 3104 6.710278 TGCTTCCACATGCTATTATGCTATA 58.290 36.000 0.00 0.00 0.00 1.31
2788 3105 6.820152 TGCTTCCACATGCTATTATGCTATAG 59.180 38.462 0.00 0.00 0.00 1.31
2850 3167 2.203266 TGTGGAATGGTGCGTGCA 60.203 55.556 0.00 0.00 0.00 4.57
2854 3171 1.093972 TGGAATGGTGCGTGCAATAG 58.906 50.000 0.00 0.00 0.00 1.73
2855 3172 1.094785 GGAATGGTGCGTGCAATAGT 58.905 50.000 0.00 0.00 0.00 2.12
2865 3182 5.258622 GTGCGTGCAATAGTCATTTTCTAG 58.741 41.667 0.00 0.00 0.00 2.43
2893 3210 6.732531 TTGTATCTTCAGCAGTGAATTCAG 57.267 37.500 8.80 0.00 41.96 3.02
2900 3217 5.474578 TCAGCAGTGAATTCAGTTACTCT 57.525 39.130 13.25 5.82 0.00 3.24
2901 3218 5.233225 TCAGCAGTGAATTCAGTTACTCTG 58.767 41.667 13.25 13.78 44.85 3.35
2906 3223 4.281182 AGTGAATTCAGTTACTCTGTCCGT 59.719 41.667 8.80 0.00 43.97 4.69
2907 3224 4.621886 GTGAATTCAGTTACTCTGTCCGTC 59.378 45.833 8.80 0.00 43.97 4.79
2911 3228 1.825474 CAGTTACTCTGTCCGTCCCAT 59.175 52.381 0.00 0.00 39.17 4.00
2920 3237 5.130477 ACTCTGTCCGTCCCATATTAATTGT 59.870 40.000 0.00 0.00 0.00 2.71
2921 3238 5.607477 TCTGTCCGTCCCATATTAATTGTC 58.393 41.667 0.00 0.00 0.00 3.18
2924 3241 2.482721 CCGTCCCATATTAATTGTCGCC 59.517 50.000 0.00 0.00 0.00 5.54
2925 3242 2.482721 CGTCCCATATTAATTGTCGCCC 59.517 50.000 0.00 0.00 0.00 6.13
2926 3243 3.482436 GTCCCATATTAATTGTCGCCCA 58.518 45.455 0.00 0.00 0.00 5.36
2927 3244 3.886505 GTCCCATATTAATTGTCGCCCAA 59.113 43.478 0.00 0.00 37.49 4.12
2929 3246 4.956700 TCCCATATTAATTGTCGCCCAAAA 59.043 37.500 0.00 0.00 36.44 2.44
2930 3247 5.068460 TCCCATATTAATTGTCGCCCAAAAG 59.932 40.000 0.00 0.00 36.44 2.27
2931 3248 5.288804 CCATATTAATTGTCGCCCAAAAGG 58.711 41.667 0.00 0.00 36.44 3.11
2933 3250 6.239289 CCATATTAATTGTCGCCCAAAAGGAT 60.239 38.462 0.00 0.00 38.24 3.24
2934 3251 5.675684 ATTAATTGTCGCCCAAAAGGATT 57.324 34.783 0.00 0.00 38.24 3.01
2935 3252 5.476091 TTAATTGTCGCCCAAAAGGATTT 57.524 34.783 0.00 0.00 42.41 2.17
2936 3253 6.591750 TTAATTGTCGCCCAAAAGGATTTA 57.408 33.333 0.00 0.00 37.28 1.40
2937 3254 5.675684 AATTGTCGCCCAAAAGGATTTAT 57.324 34.783 0.00 0.00 37.28 1.40
2939 3256 3.963129 TGTCGCCCAAAAGGATTTATCT 58.037 40.909 0.00 0.00 37.28 1.98
2940 3257 5.105567 TGTCGCCCAAAAGGATTTATCTA 57.894 39.130 0.00 0.00 37.28 1.98
2941 3258 5.123227 TGTCGCCCAAAAGGATTTATCTAG 58.877 41.667 0.00 0.00 37.28 2.43
2942 3259 4.023963 GTCGCCCAAAAGGATTTATCTAGC 60.024 45.833 0.00 0.00 37.28 3.42
2944 3261 4.261197 CGCCCAAAAGGATTTATCTAGCAC 60.261 45.833 0.00 0.00 37.28 4.40
2945 3262 4.889995 GCCCAAAAGGATTTATCTAGCACT 59.110 41.667 0.00 0.00 37.28 4.40
2946 3263 6.062095 GCCCAAAAGGATTTATCTAGCACTA 58.938 40.000 0.00 0.00 37.28 2.74
2947 3264 6.546034 GCCCAAAAGGATTTATCTAGCACTAA 59.454 38.462 0.00 0.00 37.28 2.24
2948 3265 7.068226 GCCCAAAAGGATTTATCTAGCACTAAA 59.932 37.037 0.00 0.00 37.28 1.85
2949 3266 8.966868 CCCAAAAGGATTTATCTAGCACTAAAA 58.033 33.333 0.00 0.00 37.28 1.52
2955 3272 9.694137 AGGATTTATCTAGCACTAAAATACGTC 57.306 33.333 0.00 0.00 0.00 4.34
2956 3273 9.694137 GGATTTATCTAGCACTAAAATACGTCT 57.306 33.333 0.00 0.00 0.00 4.18
2963 3280 9.551734 TCTAGCACTAAAATACGTCTAGATACA 57.448 33.333 0.00 0.00 29.74 2.29
2966 3283 8.298140 AGCACTAAAATACGTCTAGATACATCC 58.702 37.037 0.00 0.00 0.00 3.51
2967 3284 7.270793 GCACTAAAATACGTCTAGATACATCCG 59.729 40.741 0.00 0.00 0.00 4.18
2968 3285 8.288208 CACTAAAATACGTCTAGATACATCCGT 58.712 37.037 8.59 8.59 0.00 4.69
2969 3286 8.844244 ACTAAAATACGTCTAGATACATCCGTT 58.156 33.333 8.82 0.00 0.00 4.44
2970 3287 7.925703 AAAATACGTCTAGATACATCCGTTG 57.074 36.000 8.82 0.00 0.00 4.10
2971 3288 3.984508 ACGTCTAGATACATCCGTTGG 57.015 47.619 0.00 0.00 0.00 3.77
2972 3289 3.548770 ACGTCTAGATACATCCGTTGGA 58.451 45.455 0.00 0.00 35.55 3.53
2976 3293 1.399714 AGATACATCCGTTGGAGCGA 58.600 50.000 0.00 0.00 34.05 4.93
2985 3302 4.126208 TCCGTTGGAGCGACAATTAATA 57.874 40.909 0.00 0.00 32.24 0.98
2989 3306 4.319477 CGTTGGAGCGACAATTAATATGGG 60.319 45.833 0.00 0.00 32.24 4.00
2990 3307 4.698201 TGGAGCGACAATTAATATGGGA 57.302 40.909 0.00 0.00 0.00 4.37
3053 3370 9.632807 CACCTATATAGAGTTGATAGCAAAGAC 57.367 37.037 11.53 0.00 35.42 3.01
3072 3392 0.107654 CAAAGGGACTAAGGAGGGCG 60.108 60.000 0.00 0.00 38.49 6.13
3074 3394 2.042230 GGGACTAAGGAGGGCGGA 60.042 66.667 0.00 0.00 0.00 5.54
3090 3410 1.268352 GCGGATGTTTGTGGTGCTTTA 59.732 47.619 0.00 0.00 0.00 1.85
3093 3413 4.555262 CGGATGTTTGTGGTGCTTTATTT 58.445 39.130 0.00 0.00 0.00 1.40
3094 3414 5.704888 CGGATGTTTGTGGTGCTTTATTTA 58.295 37.500 0.00 0.00 0.00 1.40
3095 3415 6.329496 CGGATGTTTGTGGTGCTTTATTTAT 58.671 36.000 0.00 0.00 0.00 1.40
3102 3422 9.083080 GTTTGTGGTGCTTTATTTATTGGTATC 57.917 33.333 0.00 0.00 0.00 2.24
3105 3425 9.030452 TGTGGTGCTTTATTTATTGGTATCTTT 57.970 29.630 0.00 0.00 0.00 2.52
3140 3460 6.996106 TCGTGGTAATTAATTTGAGCGTTAG 58.004 36.000 5.91 0.00 0.00 2.34
3146 3466 8.410912 GGTAATTAATTTGAGCGTTAGGGATTT 58.589 33.333 5.91 0.00 0.00 2.17
3168 3488 6.851222 TTTTTGCTGTTCACTGTTTCAAAA 57.149 29.167 0.00 0.00 32.34 2.44
3270 3591 5.675575 GCTGTTGAGGACATGAGCAAAATAG 60.676 44.000 0.00 0.00 37.69 1.73
3277 3598 4.439289 GGACATGAGCAAAATAGCCTCAAC 60.439 45.833 0.00 0.00 34.23 3.18
3291 3612 2.979813 GCCTCAACTTAACATTTGCACG 59.020 45.455 0.00 0.00 0.00 5.34
3315 3636 6.623549 CGTGTGCCATGATAATTCAGACTTTT 60.624 38.462 0.00 0.00 34.73 2.27
3337 3666 7.531857 TTTTGGTCAGGCAGATTGTTATTTA 57.468 32.000 0.00 0.00 0.00 1.40
3366 3695 3.403038 AGTTGCGGACCTGCATATAATC 58.597 45.455 11.00 1.27 45.78 1.75
3367 3696 2.078849 TGCGGACCTGCATATAATCG 57.921 50.000 6.88 0.00 40.62 3.34
3368 3697 1.616374 TGCGGACCTGCATATAATCGA 59.384 47.619 6.88 0.00 40.62 3.59
3369 3698 2.233676 TGCGGACCTGCATATAATCGAT 59.766 45.455 6.88 0.00 40.62 3.59
3370 3699 3.262420 GCGGACCTGCATATAATCGATT 58.738 45.455 16.15 16.15 34.15 3.34
3371 3700 3.062639 GCGGACCTGCATATAATCGATTG 59.937 47.826 20.87 5.66 34.15 2.67
3372 3701 4.494484 CGGACCTGCATATAATCGATTGA 58.506 43.478 20.87 8.86 0.00 2.57
3373 3702 4.929211 CGGACCTGCATATAATCGATTGAA 59.071 41.667 20.87 8.69 0.00 2.69
3374 3703 5.582269 CGGACCTGCATATAATCGATTGAAT 59.418 40.000 20.87 9.59 0.00 2.57
3375 3704 6.756542 CGGACCTGCATATAATCGATTGAATA 59.243 38.462 20.87 11.50 0.00 1.75
3376 3705 7.043125 CGGACCTGCATATAATCGATTGAATAG 60.043 40.741 20.87 10.49 0.00 1.73
3377 3706 7.225538 GGACCTGCATATAATCGATTGAATAGG 59.774 40.741 20.87 19.25 0.00 2.57
3378 3707 7.624549 ACCTGCATATAATCGATTGAATAGGT 58.375 34.615 20.87 19.79 0.00 3.08
3661 3990 3.381169 CTTTCGGGTTGGCGATGCG 62.381 63.158 0.00 0.00 0.00 4.73
3677 4006 2.787249 CGCCCAGCATTGAACTCG 59.213 61.111 0.00 0.00 0.00 4.18
3727 4056 7.257722 CACCTAGTTTGCAAGAAAGAAAGAAA 58.742 34.615 0.00 0.00 0.00 2.52
3728 4057 7.433425 CACCTAGTTTGCAAGAAAGAAAGAAAG 59.567 37.037 0.00 0.00 0.00 2.62
3729 4058 7.339466 ACCTAGTTTGCAAGAAAGAAAGAAAGA 59.661 33.333 0.00 0.00 0.00 2.52
3730 4059 7.859875 CCTAGTTTGCAAGAAAGAAAGAAAGAG 59.140 37.037 0.00 0.00 0.00 2.85
3755 4084 6.144854 CGAGAAAATGACTTGAATCTTTGCA 58.855 36.000 0.00 0.00 0.00 4.08
3771 4100 0.802994 TGCACGTGAGTTCGTTCGTT 60.803 50.000 22.23 0.00 46.40 3.85
3772 4101 0.111835 GCACGTGAGTTCGTTCGTTC 60.112 55.000 22.23 0.00 46.40 3.95
3774 4103 0.248215 ACGTGAGTTCGTTCGTTCGT 60.248 50.000 0.00 0.00 46.40 3.85
3775 4104 0.424920 CGTGAGTTCGTTCGTTCGTC 59.575 55.000 2.67 0.00 0.00 4.20
3776 4105 1.751552 GTGAGTTCGTTCGTTCGTCT 58.248 50.000 2.67 3.33 0.00 4.18
3777 4106 2.660094 CGTGAGTTCGTTCGTTCGTCTA 60.660 50.000 2.67 0.00 0.00 2.59
3817 4146 4.886971 GACATTTTGTCGCAGAGATGTAC 58.113 43.478 0.00 0.00 37.67 2.90
3818 4147 4.569943 ACATTTTGTCGCAGAGATGTACT 58.430 39.130 0.00 0.00 36.95 2.73
3819 4148 4.627467 ACATTTTGTCGCAGAGATGTACTC 59.373 41.667 0.00 0.00 45.22 2.59
3820 4149 2.941453 TTGTCGCAGAGATGTACTCC 57.059 50.000 0.00 0.00 45.96 3.85
3821 4150 1.103803 TGTCGCAGAGATGTACTCCC 58.896 55.000 0.00 0.00 45.96 4.30
3822 4151 1.341089 TGTCGCAGAGATGTACTCCCT 60.341 52.381 0.00 0.00 45.96 4.20
3823 4152 1.335496 GTCGCAGAGATGTACTCCCTC 59.665 57.143 0.00 0.00 45.96 4.30
3824 4153 0.671251 CGCAGAGATGTACTCCCTCC 59.329 60.000 0.00 0.00 45.96 4.30
3825 4154 0.671251 GCAGAGATGTACTCCCTCCG 59.329 60.000 0.00 0.00 45.96 4.63
3826 4155 2.024825 GCAGAGATGTACTCCCTCCGT 61.025 57.143 0.00 0.00 45.96 4.69
3827 4156 2.379972 CAGAGATGTACTCCCTCCGTT 58.620 52.381 0.00 0.00 45.96 4.44
3828 4157 2.359531 CAGAGATGTACTCCCTCCGTTC 59.640 54.545 0.00 0.00 45.96 3.95
3829 4158 1.334243 GAGATGTACTCCCTCCGTTCG 59.666 57.143 0.00 0.00 39.53 3.95
3830 4159 1.064906 AGATGTACTCCCTCCGTTCGA 60.065 52.381 0.00 0.00 0.00 3.71
3831 4160 1.747355 GATGTACTCCCTCCGTTCGAA 59.253 52.381 0.00 0.00 0.00 3.71
3832 4161 1.619654 TGTACTCCCTCCGTTCGAAA 58.380 50.000 0.00 0.00 0.00 3.46
3833 4162 2.173519 TGTACTCCCTCCGTTCGAAAT 58.826 47.619 0.00 0.00 0.00 2.17
3834 4163 2.564062 TGTACTCCCTCCGTTCGAAATT 59.436 45.455 0.00 0.00 0.00 1.82
3835 4164 3.763360 TGTACTCCCTCCGTTCGAAATTA 59.237 43.478 0.00 0.00 0.00 1.40
3836 4165 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
3837 4166 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
3838 4167 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
3839 4168 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
3840 4169 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
3841 4170 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
3842 4171 4.243270 CCTCCGTTCGAAATTACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
3843 4172 4.689345 CCTCCGTTCGAAATTACTTGTCTT 59.311 41.667 0.00 0.00 0.00 3.01
3844 4173 5.389516 CCTCCGTTCGAAATTACTTGTCTTG 60.390 44.000 0.00 0.00 0.00 3.02
3845 4174 5.291178 TCCGTTCGAAATTACTTGTCTTGA 58.709 37.500 0.00 0.00 0.00 3.02
3846 4175 5.754406 TCCGTTCGAAATTACTTGTCTTGAA 59.246 36.000 0.00 0.00 0.00 2.69
3847 4176 6.258287 TCCGTTCGAAATTACTTGTCTTGAAA 59.742 34.615 0.00 0.00 0.00 2.69
3848 4177 6.908284 CCGTTCGAAATTACTTGTCTTGAAAA 59.092 34.615 0.00 0.00 0.00 2.29
3849 4178 7.589954 CCGTTCGAAATTACTTGTCTTGAAAAT 59.410 33.333 0.00 0.00 0.00 1.82
3850 4179 8.409690 CGTTCGAAATTACTTGTCTTGAAAATG 58.590 33.333 0.00 0.00 0.00 2.32
3851 4180 8.690840 GTTCGAAATTACTTGTCTTGAAAATGG 58.309 33.333 0.00 0.00 0.00 3.16
3852 4181 8.160521 TCGAAATTACTTGTCTTGAAAATGGA 57.839 30.769 0.00 0.00 0.00 3.41
3853 4182 8.792633 TCGAAATTACTTGTCTTGAAAATGGAT 58.207 29.630 0.00 0.00 0.00 3.41
3854 4183 8.853345 CGAAATTACTTGTCTTGAAAATGGATG 58.147 33.333 0.00 0.00 0.00 3.51
3855 4184 9.696917 GAAATTACTTGTCTTGAAAATGGATGT 57.303 29.630 0.00 0.00 0.00 3.06
3859 4188 9.739276 TTACTTGTCTTGAAAATGGATGTATCT 57.261 29.630 0.00 0.00 0.00 1.98
3861 4190 9.388506 ACTTGTCTTGAAAATGGATGTATCTAG 57.611 33.333 0.00 0.00 0.00 2.43
3862 4191 9.605275 CTTGTCTTGAAAATGGATGTATCTAGA 57.395 33.333 0.00 0.00 0.00 2.43
3863 4192 9.958180 TTGTCTTGAAAATGGATGTATCTAGAA 57.042 29.630 0.00 0.00 0.00 2.10
3864 4193 9.383519 TGTCTTGAAAATGGATGTATCTAGAAC 57.616 33.333 0.00 0.00 0.00 3.01
3865 4194 9.606631 GTCTTGAAAATGGATGTATCTAGAACT 57.393 33.333 0.00 0.00 0.00 3.01
3874 4203 9.712305 ATGGATGTATCTAGAACTAAAATTCCG 57.288 33.333 0.00 0.00 0.00 4.30
3875 4204 8.920174 TGGATGTATCTAGAACTAAAATTCCGA 58.080 33.333 0.00 0.00 0.00 4.55
3876 4205 9.760077 GGATGTATCTAGAACTAAAATTCCGAA 57.240 33.333 0.00 0.00 0.00 4.30
3878 4207 8.624701 TGTATCTAGAACTAAAATTCCGAACG 57.375 34.615 0.00 0.00 0.00 3.95
3879 4208 7.703621 TGTATCTAGAACTAAAATTCCGAACGG 59.296 37.037 6.94 6.94 0.00 4.44
3880 4209 6.271488 TCTAGAACTAAAATTCCGAACGGA 57.729 37.500 12.04 12.04 43.52 4.69
3881 4210 6.327934 TCTAGAACTAAAATTCCGAACGGAG 58.672 40.000 15.34 6.26 46.06 4.63
3882 4211 4.251268 AGAACTAAAATTCCGAACGGAGG 58.749 43.478 15.34 6.50 46.06 4.30
3883 4212 2.981898 ACTAAAATTCCGAACGGAGGG 58.018 47.619 15.34 6.79 46.06 4.30
3884 4213 2.568509 ACTAAAATTCCGAACGGAGGGA 59.431 45.455 15.34 2.49 46.06 4.20
3885 4214 2.109425 AAAATTCCGAACGGAGGGAG 57.891 50.000 15.34 0.00 46.06 4.30
3886 4215 0.981943 AAATTCCGAACGGAGGGAGT 59.018 50.000 15.34 0.00 46.06 3.85
3887 4216 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
4003 4332 7.338800 CACCTCTCTTTTGGTGCATAATAAT 57.661 36.000 0.00 0.00 45.68 1.28
4085 4435 7.666623 TCCTGTTAAATCATTTGAGTTTTCCC 58.333 34.615 0.00 0.00 34.03 3.97
4097 4447 8.624776 CATTTGAGTTTTCCCCTATGATTCTAC 58.375 37.037 0.00 0.00 0.00 2.59
4126 4476 4.398549 TCCAAAACAGCTTAATCGAACG 57.601 40.909 0.00 0.00 0.00 3.95
4127 4477 4.059511 TCCAAAACAGCTTAATCGAACGA 58.940 39.130 0.00 0.00 0.00 3.85
4132 4482 4.842139 ACAGCTTAATCGAACGATTCAC 57.158 40.909 22.44 14.30 43.04 3.18
4133 4483 4.242475 ACAGCTTAATCGAACGATTCACA 58.758 39.130 22.44 6.31 43.04 3.58
4135 4485 4.562789 CAGCTTAATCGAACGATTCACAGA 59.437 41.667 22.44 5.65 43.04 3.41
4137 4487 4.563184 GCTTAATCGAACGATTCACAGACT 59.437 41.667 22.44 2.98 43.04 3.24
4179 6131 4.631377 TCAGGTTGCTAATTTCATGAGACG 59.369 41.667 0.00 0.00 0.00 4.18
4191 6143 7.778470 ATTTCATGAGACGAAGGTAGAATTC 57.222 36.000 0.00 0.00 0.00 2.17
4207 6159 3.769300 AGAATTCCAACAATACCCTTGCC 59.231 43.478 0.65 0.00 0.00 4.52
4220 6172 4.803329 ACCCTTGCCTGAGAATATCATT 57.197 40.909 0.00 0.00 37.28 2.57
4432 6397 2.158593 AGCTAGAGGGCGAGAATCACTA 60.159 50.000 0.00 0.00 37.29 2.74
4485 6450 1.597854 CAAAGCACGTCCCTCTGCA 60.598 57.895 0.00 0.00 35.73 4.41
4496 6461 4.662961 CTCTGCACGACCGCACCA 62.663 66.667 0.00 0.00 36.86 4.17
4499 6464 4.306967 TGCACGACCGCACCATCA 62.307 61.111 0.00 0.00 36.86 3.07
4553 6518 3.356639 ATCATGGTCGTGCGACGCT 62.357 57.895 22.08 5.44 45.41 5.07
4606 6571 2.679336 CGATCATGATGTTGGTGAGCAA 59.321 45.455 14.30 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 198 3.950397 TGTCATGTTTTAAGCTCCCGAT 58.050 40.909 0.00 0.00 0.00 4.18
225 227 3.357079 GCGCAAGTGGTCCCAGTG 61.357 66.667 0.30 0.00 41.68 3.66
249 251 8.081633 TCTGTGCGTAAAGAAATTTTGATCAAT 58.918 29.630 9.40 0.00 0.00 2.57
269 271 5.808042 TGAGAAAGCAATATCTTCTGTGC 57.192 39.130 0.00 0.00 37.26 4.57
271 273 7.066766 GTGGATTGAGAAAGCAATATCTTCTGT 59.933 37.037 0.00 0.00 38.53 3.41
275 277 5.595952 GGGTGGATTGAGAAAGCAATATCTT 59.404 40.000 0.00 0.00 38.53 2.40
325 327 4.402056 TCGGGGCTTTCAAGTATCTAAG 57.598 45.455 0.00 0.00 0.00 2.18
346 348 8.903820 GCCATCTGGTATTGAAACTAGTAAAAT 58.096 33.333 0.00 0.00 37.57 1.82
364 366 4.473444 AGTATTTGGGTAATGCCATCTGG 58.527 43.478 0.00 0.00 39.65 3.86
422 424 1.751437 ATCAGGCGGAAGGTTAAAGC 58.249 50.000 0.00 0.00 0.00 3.51
427 429 1.867363 AGTCTATCAGGCGGAAGGTT 58.133 50.000 0.00 0.00 0.00 3.50
432 434 1.480954 GTCCAAAGTCTATCAGGCGGA 59.519 52.381 0.00 0.00 0.00 5.54
434 436 2.672961 TGTCCAAAGTCTATCAGGCG 57.327 50.000 0.00 0.00 0.00 5.52
440 442 7.496346 TCAGTAAAGGATGTCCAAAGTCTAT 57.504 36.000 1.30 0.00 38.89 1.98
447 449 6.264518 GGTCTTTTTCAGTAAAGGATGTCCAA 59.735 38.462 1.30 0.00 34.77 3.53
500 502 9.342308 ACTGAATTCTTATTGTCAAACTTCAGA 57.658 29.630 16.15 2.10 39.42 3.27
529 531 1.299976 GGCGAGGGAGGTGTCAAAT 59.700 57.895 0.00 0.00 0.00 2.32
581 584 9.781834 CGGTTAATCACTTTTTATTTGCTCATA 57.218 29.630 0.00 0.00 0.00 2.15
584 587 6.530181 CCCGGTTAATCACTTTTTATTTGCTC 59.470 38.462 0.00 0.00 0.00 4.26
596 599 2.587889 CGCCCCCGGTTAATCACT 59.412 61.111 0.00 0.00 0.00 3.41
638 641 1.914700 GAGATCAGTCGTCGCAAGTTC 59.085 52.381 0.00 0.00 39.48 3.01
675 678 3.474034 GCTGAGAGTGCGCGTCAC 61.474 66.667 20.97 20.97 45.98 3.67
676 679 4.724602 GGCTGAGAGTGCGCGTCA 62.725 66.667 8.43 3.08 0.00 4.35
677 680 3.052620 TAGGCTGAGAGTGCGCGTC 62.053 63.158 8.43 1.39 0.00 5.19
678 681 3.062466 TAGGCTGAGAGTGCGCGT 61.062 61.111 8.43 0.00 0.00 6.01
679 682 2.580867 GTAGGCTGAGAGTGCGCG 60.581 66.667 0.00 0.00 0.00 6.86
680 683 2.202810 GGTAGGCTGAGAGTGCGC 60.203 66.667 0.00 0.00 0.00 6.09
681 684 0.037326 TTTGGTAGGCTGAGAGTGCG 60.037 55.000 0.00 0.00 0.00 5.34
684 687 4.971924 AGGATATTTTGGTAGGCTGAGAGT 59.028 41.667 0.00 0.00 0.00 3.24
744 749 1.455773 GGGCTACCCTGGGCAATTC 60.456 63.158 14.08 0.00 41.34 2.17
745 750 1.809939 TTGGGCTACCCTGGGCAATT 61.810 55.000 14.08 0.00 45.70 2.32
1120 1131 2.932614 CGCCGAGACAGAGATGAAAATT 59.067 45.455 0.00 0.00 0.00 1.82
1121 1132 2.544685 CGCCGAGACAGAGATGAAAAT 58.455 47.619 0.00 0.00 0.00 1.82
1139 1150 0.868602 TCGCAGTACGCTAATTCCGC 60.869 55.000 7.82 0.00 43.23 5.54
1147 1158 1.201647 AGTAACACATCGCAGTACGCT 59.798 47.619 7.82 0.00 43.23 5.07
1151 1162 2.414957 CGTGGAGTAACACATCGCAGTA 60.415 50.000 0.00 0.00 41.38 2.74
1170 1181 2.040544 CCTGGCAGGCGAAATTCGT 61.041 57.895 22.68 0.00 42.81 3.85
1443 1456 3.561213 CCTCGCAGCGCACAGATG 61.561 66.667 10.87 0.00 39.70 2.90
1452 1465 4.351192 CATTTTACATTTACCCTCGCAGC 58.649 43.478 0.00 0.00 0.00 5.25
1500 1513 4.168014 CACGCTATGCACATTTCACATTT 58.832 39.130 0.00 0.00 0.00 2.32
1501 1514 3.191162 ACACGCTATGCACATTTCACATT 59.809 39.130 0.00 0.00 0.00 2.71
1503 1516 2.150390 ACACGCTATGCACATTTCACA 58.850 42.857 0.00 0.00 0.00 3.58
1504 1517 2.900122 ACACGCTATGCACATTTCAC 57.100 45.000 0.00 0.00 0.00 3.18
1505 1518 3.855858 TCTACACGCTATGCACATTTCA 58.144 40.909 0.00 0.00 0.00 2.69
1506 1519 4.857871 TTCTACACGCTATGCACATTTC 57.142 40.909 0.00 0.00 0.00 2.17
1507 1520 5.621197 TTTTCTACACGCTATGCACATTT 57.379 34.783 0.00 0.00 0.00 2.32
1508 1521 5.390613 GTTTTTCTACACGCTATGCACATT 58.609 37.500 0.00 0.00 0.00 2.71
1509 1522 4.142687 GGTTTTTCTACACGCTATGCACAT 60.143 41.667 0.00 0.00 0.00 3.21
1510 1523 3.187637 GGTTTTTCTACACGCTATGCACA 59.812 43.478 0.00 0.00 0.00 4.57
1511 1524 3.723835 CGGTTTTTCTACACGCTATGCAC 60.724 47.826 0.00 0.00 0.00 4.57
1512 1525 2.413796 CGGTTTTTCTACACGCTATGCA 59.586 45.455 0.00 0.00 0.00 3.96
1513 1526 2.786700 GCGGTTTTTCTACACGCTATGC 60.787 50.000 0.00 0.00 46.02 3.14
1514 1527 3.034406 GCGGTTTTTCTACACGCTATG 57.966 47.619 0.00 0.00 46.02 2.23
1519 1532 2.073816 AGATGGCGGTTTTTCTACACG 58.926 47.619 0.00 0.00 0.00 4.49
1542 1555 4.536090 TGAGGTCTTAATCAGTGTTCCCAT 59.464 41.667 0.00 0.00 0.00 4.00
1558 1571 0.972883 GTTGGCAGAGAGTGAGGTCT 59.027 55.000 0.00 0.00 0.00 3.85
1559 1572 0.036858 GGTTGGCAGAGAGTGAGGTC 60.037 60.000 0.00 0.00 0.00 3.85
1568 1581 1.593265 GCCCATTTGGTTGGCAGAG 59.407 57.895 0.00 0.00 44.70 3.35
1591 1604 6.114089 TGTAGCCAGTAACAGTGTTAAACAA 58.886 36.000 17.16 0.00 0.00 2.83
1652 1665 1.466167 CACGATGCTCCAACAAGAAGG 59.534 52.381 0.00 0.00 0.00 3.46
1695 1708 0.968405 GCAAGGCAACAAGGGATTGA 59.032 50.000 0.00 0.00 41.41 2.57
1698 1711 0.178953 ACAGCAAGGCAACAAGGGAT 60.179 50.000 0.00 0.00 41.41 3.85
1718 1731 8.986477 ACAAAATTATAGCATCCTTGTTCAAC 57.014 30.769 0.00 0.00 0.00 3.18
1766 1787 4.917415 GCAATACTCATGCGTGTTCTTTTT 59.083 37.500 5.68 0.00 33.57 1.94
1767 1788 4.475944 GCAATACTCATGCGTGTTCTTTT 58.524 39.130 5.68 0.00 33.57 2.27
1768 1789 4.083581 GCAATACTCATGCGTGTTCTTT 57.916 40.909 5.68 0.00 33.57 2.52
1780 1801 4.219944 AGAAGGAGTAACACGCAATACTCA 59.780 41.667 18.19 0.00 46.33 3.41
1830 1851 9.474313 ACAGACTCTTTTCTATCTTAGTGATCT 57.526 33.333 0.00 0.00 36.65 2.75
1841 1862 7.963532 TCTGGTTGTAACAGACTCTTTTCTAT 58.036 34.615 0.00 0.00 39.87 1.98
1848 1869 4.263068 CCCATTCTGGTTGTAACAGACTCT 60.263 45.833 0.00 0.00 44.07 3.24
1862 1883 1.539827 GTGTTCCGTTTCCCATTCTGG 59.460 52.381 0.00 0.00 37.25 3.86
1868 1889 1.149627 CAGGGTGTTCCGTTTCCCA 59.850 57.895 0.00 0.00 42.12 4.37
1869 1890 1.602605 CCAGGGTGTTCCGTTTCCC 60.603 63.158 0.00 0.00 41.52 3.97
1872 1893 2.203437 GGCCAGGGTGTTCCGTTT 60.203 61.111 0.00 0.00 41.52 3.60
1875 1896 2.438434 GATGGCCAGGGTGTTCCG 60.438 66.667 13.05 0.00 41.52 4.30
1876 1897 1.678970 GTGATGGCCAGGGTGTTCC 60.679 63.158 13.05 0.00 0.00 3.62
1877 1898 2.040544 CGTGATGGCCAGGGTGTTC 61.041 63.158 13.05 2.66 0.00 3.18
1886 1907 1.467342 GTGGTTTACTTCGTGATGGCC 59.533 52.381 0.00 0.00 0.00 5.36
1895 1916 5.927115 CAGGAGTAGTTCTGTGGTTTACTTC 59.073 44.000 0.00 0.00 0.00 3.01
1904 1925 6.516739 TTGATAGTCAGGAGTAGTTCTGTG 57.483 41.667 5.74 0.00 33.13 3.66
1921 1942 4.576463 GCAGGGTGGTGTTCTATTTGATAG 59.424 45.833 0.00 0.00 0.00 2.08
1926 1947 2.969821 TGCAGGGTGGTGTTCTATTT 57.030 45.000 0.00 0.00 0.00 1.40
1931 1952 1.203052 CAATGATGCAGGGTGGTGTTC 59.797 52.381 0.00 0.00 0.00 3.18
1933 1954 0.405198 TCAATGATGCAGGGTGGTGT 59.595 50.000 0.00 0.00 0.00 4.16
1950 1971 1.140452 GGAGATCCAGCAGCTTGATCA 59.860 52.381 29.28 0.00 35.79 2.92
1970 1998 2.002586 GATGACATTGGACACGAGTGG 58.997 52.381 8.19 0.00 34.19 4.00
1977 2005 4.635769 GGCCGATGACATTGGACA 57.364 55.556 23.90 0.00 41.94 4.02
1999 2027 1.174078 TACGACTTGGTCCACTGCGA 61.174 55.000 11.98 0.00 0.00 5.10
2000 2028 0.108804 ATACGACTTGGTCCACTGCG 60.109 55.000 0.00 0.00 0.00 5.18
2016 2044 6.546395 GTTGGACATGAGTGTTCATCAATAC 58.454 40.000 0.00 0.00 43.28 1.89
2020 2048 3.066380 CGTTGGACATGAGTGTTCATCA 58.934 45.455 0.00 0.00 43.28 3.07
2030 2058 0.739462 GCCGATGACGTTGGACATGA 60.739 55.000 4.99 0.00 37.88 3.07
2031 2059 1.705337 GGCCGATGACGTTGGACATG 61.705 60.000 4.99 0.00 39.53 3.21
2032 2060 1.449601 GGCCGATGACGTTGGACAT 60.450 57.895 4.99 0.00 39.53 3.06
2033 2061 2.047655 GGCCGATGACGTTGGACA 60.048 61.111 4.99 0.00 39.53 4.02
2034 2062 2.047655 TGGCCGATGACGTTGGAC 60.048 61.111 4.99 1.97 40.28 4.02
2035 2063 2.047655 GTGGCCGATGACGTTGGA 60.048 61.111 4.99 0.00 37.88 3.53
2036 2064 2.047274 AGTGGCCGATGACGTTGG 60.047 61.111 0.00 0.00 37.88 3.77
2037 2065 2.444624 CGAGTGGCCGATGACGTTG 61.445 63.158 0.00 0.00 37.88 4.10
2038 2066 2.126071 CGAGTGGCCGATGACGTT 60.126 61.111 0.00 0.00 37.88 3.99
2039 2067 3.371063 ACGAGTGGCCGATGACGT 61.371 61.111 0.00 2.68 37.88 4.34
2040 2068 2.880879 CACGAGTGGCCGATGACG 60.881 66.667 0.00 1.99 39.43 4.35
2041 2069 1.805945 GACACGAGTGGCCGATGAC 60.806 63.158 8.19 0.00 30.68 3.06
2042 2070 2.571757 GACACGAGTGGCCGATGA 59.428 61.111 8.19 0.00 30.68 2.92
2048 2076 2.024176 AATACATGGACACGAGTGGC 57.976 50.000 8.19 4.14 38.06 5.01
2049 2077 3.426159 GCAAAATACATGGACACGAGTGG 60.426 47.826 8.19 0.00 34.19 4.00
2050 2078 3.188254 TGCAAAATACATGGACACGAGTG 59.812 43.478 0.00 1.13 0.00 3.51
2051 2079 3.407698 TGCAAAATACATGGACACGAGT 58.592 40.909 0.00 0.00 0.00 4.18
2052 2080 4.621068 ATGCAAAATACATGGACACGAG 57.379 40.909 0.00 0.00 0.00 4.18
2053 2081 5.384063 AAATGCAAAATACATGGACACGA 57.616 34.783 0.00 0.00 0.00 4.35
2054 2082 6.365789 AGAAAAATGCAAAATACATGGACACG 59.634 34.615 0.00 0.00 0.00 4.49
2055 2083 7.656707 AGAAAAATGCAAAATACATGGACAC 57.343 32.000 0.00 0.00 0.00 3.67
2102 2131 7.730364 GAGGAAAACTCAAACATGAGAACTA 57.270 36.000 12.46 0.00 45.85 2.24
2122 2151 1.345741 CTCTGCAGTGAAACCTGAGGA 59.654 52.381 14.67 0.00 37.80 3.71
2148 2177 6.071784 ACAAATAGTTGCAGAATTCATGAGCA 60.072 34.615 8.44 9.24 38.39 4.26
2193 2263 9.928236 GCATACAGAGTCTTTTATCAGAATTTC 57.072 33.333 0.00 0.00 0.00 2.17
2196 2266 7.497249 GGTGCATACAGAGTCTTTTATCAGAAT 59.503 37.037 0.00 0.00 0.00 2.40
2221 2291 7.431249 AGCATCACTTAGAAATAATGCAATGG 58.569 34.615 7.75 0.00 41.42 3.16
2222 2292 7.322938 CGAGCATCACTTAGAAATAATGCAATG 59.677 37.037 7.75 0.00 41.42 2.82
2223 2293 7.358066 CGAGCATCACTTAGAAATAATGCAAT 58.642 34.615 7.75 0.00 41.42 3.56
2227 2297 5.237127 TGCCGAGCATCACTTAGAAATAATG 59.763 40.000 0.00 0.00 31.71 1.90
2231 2301 3.266510 TGCCGAGCATCACTTAGAAAT 57.733 42.857 0.00 0.00 31.71 2.17
2268 2344 7.907841 AACTAATGTTTACCCAAGAAAAGGT 57.092 32.000 0.00 0.00 40.31 3.50
2369 2453 5.175856 GCAAATAGCTGGACGACTATAACAG 59.824 44.000 0.00 0.00 41.15 3.16
2371 2455 5.047847 TGCAAATAGCTGGACGACTATAAC 58.952 41.667 0.00 0.00 45.94 1.89
2372 2456 5.047847 GTGCAAATAGCTGGACGACTATAA 58.952 41.667 0.00 0.00 45.94 0.98
2392 2476 7.489757 TGACAAACAAAACAAACTAATAGGTGC 59.510 33.333 0.00 0.00 0.00 5.01
2455 2541 6.558771 TCTTGGATGAACTTGTACACAATG 57.441 37.500 0.00 0.00 35.02 2.82
2577 2663 2.099405 ACAATACAAGGGATTTGCGGG 58.901 47.619 0.00 0.00 40.59 6.13
2579 2665 2.491693 ACCACAATACAAGGGATTTGCG 59.508 45.455 0.00 0.00 40.59 4.85
2591 2677 4.165372 TGGAGGGAGGATAAACCACAATAC 59.835 45.833 0.00 0.00 42.04 1.89
2605 2691 3.089838 TGGCAACATGGAGGGAGG 58.910 61.111 0.00 0.00 46.17 4.30
2642 2728 8.608317 GGAGAGAAAATACTCACTTTGATTAGC 58.392 37.037 0.00 0.00 39.14 3.09
2651 2968 6.019748 TCTGGAAGGAGAGAAAATACTCACT 58.980 40.000 0.00 0.00 39.14 3.41
2760 3077 4.216902 GCATAATAGCATGTGGAAGCATGA 59.783 41.667 9.87 0.00 46.65 3.07
2828 3145 1.541147 CACGCACCATTCCACAGAAAT 59.459 47.619 0.00 0.00 35.09 2.17
2829 3146 0.950836 CACGCACCATTCCACAGAAA 59.049 50.000 0.00 0.00 35.09 2.52
2893 3210 4.667519 AATATGGGACGGACAGAGTAAC 57.332 45.455 0.00 0.00 0.00 2.50
2900 3217 4.373527 CGACAATTAATATGGGACGGACA 58.626 43.478 0.00 0.00 0.00 4.02
2901 3218 3.185797 GCGACAATTAATATGGGACGGAC 59.814 47.826 0.00 0.00 0.00 4.79
2906 3223 3.866703 TGGGCGACAATTAATATGGGA 57.133 42.857 0.00 0.00 0.00 4.37
2907 3224 4.927978 TTTGGGCGACAATTAATATGGG 57.072 40.909 0.00 0.00 39.21 4.00
2911 3228 6.783708 AATCCTTTTGGGCGACAATTAATA 57.216 33.333 0.00 0.00 39.21 0.98
2920 3237 4.134563 GCTAGATAAATCCTTTTGGGCGA 58.865 43.478 0.00 0.00 40.87 5.54
2921 3238 3.882888 TGCTAGATAAATCCTTTTGGGCG 59.117 43.478 0.00 0.00 40.87 6.13
2929 3246 9.694137 GACGTATTTTAGTGCTAGATAAATCCT 57.306 33.333 0.00 0.00 0.00 3.24
2930 3247 9.694137 AGACGTATTTTAGTGCTAGATAAATCC 57.306 33.333 0.00 0.00 0.00 3.01
2937 3254 9.551734 TGTATCTAGACGTATTTTAGTGCTAGA 57.448 33.333 0.00 7.14 37.74 2.43
2940 3257 8.298140 GGATGTATCTAGACGTATTTTAGTGCT 58.702 37.037 0.00 0.00 0.00 4.40
2941 3258 7.270793 CGGATGTATCTAGACGTATTTTAGTGC 59.729 40.741 0.00 0.00 0.00 4.40
2942 3259 8.288208 ACGGATGTATCTAGACGTATTTTAGTG 58.712 37.037 0.00 0.00 32.30 2.74
2944 3261 9.114965 CAACGGATGTATCTAGACGTATTTTAG 57.885 37.037 0.00 0.00 33.85 1.85
2945 3262 8.077991 CCAACGGATGTATCTAGACGTATTTTA 58.922 37.037 0.00 0.00 33.85 1.52
2946 3263 6.921857 CCAACGGATGTATCTAGACGTATTTT 59.078 38.462 0.00 0.00 33.85 1.82
2947 3264 6.263842 TCCAACGGATGTATCTAGACGTATTT 59.736 38.462 0.00 0.00 33.85 1.40
2948 3265 5.766670 TCCAACGGATGTATCTAGACGTATT 59.233 40.000 0.00 0.00 33.85 1.89
2949 3266 5.311265 TCCAACGGATGTATCTAGACGTAT 58.689 41.667 0.00 0.00 33.85 3.06
2953 3270 3.609644 CGCTCCAACGGATGTATCTAGAC 60.610 52.174 0.00 0.00 0.00 2.59
2954 3271 2.552743 CGCTCCAACGGATGTATCTAGA 59.447 50.000 0.00 0.00 0.00 2.43
2955 3272 2.552743 TCGCTCCAACGGATGTATCTAG 59.447 50.000 0.00 0.00 0.00 2.43
2956 3273 2.292569 GTCGCTCCAACGGATGTATCTA 59.707 50.000 0.00 0.00 0.00 1.98
2957 3274 1.067212 GTCGCTCCAACGGATGTATCT 59.933 52.381 0.00 0.00 0.00 1.98
2958 3275 1.202371 TGTCGCTCCAACGGATGTATC 60.202 52.381 0.00 0.00 0.00 2.24
2959 3276 0.821517 TGTCGCTCCAACGGATGTAT 59.178 50.000 0.00 0.00 0.00 2.29
2960 3277 0.604073 TTGTCGCTCCAACGGATGTA 59.396 50.000 0.00 0.00 0.00 2.29
2961 3278 0.036388 ATTGTCGCTCCAACGGATGT 60.036 50.000 0.00 0.00 0.00 3.06
2962 3279 1.086696 AATTGTCGCTCCAACGGATG 58.913 50.000 0.00 0.00 0.00 3.51
2963 3280 2.684001 TAATTGTCGCTCCAACGGAT 57.316 45.000 0.00 0.00 0.00 4.18
2964 3281 2.459060 TTAATTGTCGCTCCAACGGA 57.541 45.000 0.00 0.00 0.00 4.69
2965 3282 4.319477 CCATATTAATTGTCGCTCCAACGG 60.319 45.833 0.00 0.00 0.00 4.44
2966 3283 4.319477 CCCATATTAATTGTCGCTCCAACG 60.319 45.833 0.00 0.00 0.00 4.10
2967 3284 4.819630 TCCCATATTAATTGTCGCTCCAAC 59.180 41.667 0.00 0.00 0.00 3.77
2968 3285 4.819630 GTCCCATATTAATTGTCGCTCCAA 59.180 41.667 0.00 0.00 0.00 3.53
2969 3286 4.385825 GTCCCATATTAATTGTCGCTCCA 58.614 43.478 0.00 0.00 0.00 3.86
2970 3287 3.432252 CGTCCCATATTAATTGTCGCTCC 59.568 47.826 0.00 0.00 0.00 4.70
2971 3288 3.432252 CCGTCCCATATTAATTGTCGCTC 59.568 47.826 0.00 0.00 0.00 5.03
2972 3289 3.070446 TCCGTCCCATATTAATTGTCGCT 59.930 43.478 0.00 0.00 0.00 4.93
2976 3293 5.130477 ACTCACTCCGTCCCATATTAATTGT 59.870 40.000 0.00 0.00 0.00 2.71
2985 3302 0.324368 TGCTACTCACTCCGTCCCAT 60.324 55.000 0.00 0.00 0.00 4.00
2996 3313 7.801716 ATTGTGAAAGTAAAAGTGCTACTCA 57.198 32.000 0.00 0.00 0.00 3.41
3034 3351 6.825721 CCCTTTGTCTTTGCTATCAACTCTAT 59.174 38.462 0.00 0.00 30.75 1.98
3053 3370 0.107654 CGCCCTCCTTAGTCCCTTTG 60.108 60.000 0.00 0.00 0.00 2.77
3057 3377 1.459730 ATCCGCCCTCCTTAGTCCC 60.460 63.158 0.00 0.00 0.00 4.46
3072 3392 7.064490 CCAATAAATAAAGCACCACAAACATCC 59.936 37.037 0.00 0.00 0.00 3.51
3074 3394 7.449247 ACCAATAAATAAAGCACCACAAACAT 58.551 30.769 0.00 0.00 0.00 2.71
3094 3414 9.840427 CACGAATTCAAACTAAAAGATACCAAT 57.160 29.630 6.22 0.00 0.00 3.16
3095 3415 8.293867 CCACGAATTCAAACTAAAAGATACCAA 58.706 33.333 6.22 0.00 0.00 3.67
3111 3431 6.964370 CGCTCAAATTAATTACCACGAATTCA 59.036 34.615 6.22 0.00 31.51 2.57
3117 3437 6.189567 CCTAACGCTCAAATTAATTACCACG 58.810 40.000 0.01 6.59 0.00 4.94
3146 3466 6.851222 TTTTTGAAACAGTGAACAGCAAAA 57.149 29.167 0.00 0.00 33.52 2.44
3168 3488 9.167311 GTGATAGAAATCAGGTACAGATGTTTT 57.833 33.333 0.00 0.00 42.80 2.43
3175 3495 5.812642 GTGTGGTGATAGAAATCAGGTACAG 59.187 44.000 0.00 0.00 42.80 2.74
3176 3496 5.247337 TGTGTGGTGATAGAAATCAGGTACA 59.753 40.000 0.00 0.00 42.80 2.90
3224 3545 6.932960 CAGCTCAAGACATACATCATATTCCA 59.067 38.462 0.00 0.00 0.00 3.53
3228 3549 7.503549 TCAACAGCTCAAGACATACATCATAT 58.496 34.615 0.00 0.00 0.00 1.78
3270 3591 2.979813 CGTGCAAATGTTAAGTTGAGGC 59.020 45.455 0.00 0.00 33.15 4.70
3306 3627 2.172505 TCTGCCTGACCAAAAAGTCTGA 59.827 45.455 0.00 0.00 37.78 3.27
3315 3636 7.716799 AATAAATAACAATCTGCCTGACCAA 57.283 32.000 0.00 0.00 0.00 3.67
3337 3666 2.086869 CAGGTCCGCAACTCATCAAAT 58.913 47.619 0.00 0.00 0.00 2.32
3366 3695 7.304735 TGTGAACAATCAAACCTATTCAATCG 58.695 34.615 0.00 0.00 37.30 3.34
3367 3696 9.474920 TTTGTGAACAATCAAACCTATTCAATC 57.525 29.630 0.00 0.00 37.30 2.67
3369 3698 9.258826 CATTTGTGAACAATCAAACCTATTCAA 57.741 29.630 0.00 0.00 37.30 2.69
3370 3699 7.871973 CCATTTGTGAACAATCAAACCTATTCA 59.128 33.333 0.00 0.00 37.30 2.57
3371 3700 7.148590 GCCATTTGTGAACAATCAAACCTATTC 60.149 37.037 0.00 0.00 37.30 1.75
3372 3701 6.650390 GCCATTTGTGAACAATCAAACCTATT 59.350 34.615 0.00 0.00 37.30 1.73
3373 3702 6.165577 GCCATTTGTGAACAATCAAACCTAT 58.834 36.000 0.00 0.00 37.30 2.57
3374 3703 5.510520 GGCCATTTGTGAACAATCAAACCTA 60.511 40.000 0.00 0.00 37.30 3.08
3375 3704 4.379652 GCCATTTGTGAACAATCAAACCT 58.620 39.130 0.00 0.00 37.30 3.50
3376 3705 3.498018 GGCCATTTGTGAACAATCAAACC 59.502 43.478 0.00 0.00 37.30 3.27
3377 3706 4.379652 AGGCCATTTGTGAACAATCAAAC 58.620 39.130 5.01 0.00 37.30 2.93
3378 3707 4.686191 AGGCCATTTGTGAACAATCAAA 57.314 36.364 5.01 0.00 37.30 2.69
3661 3990 1.237285 ACACGAGTTCAATGCTGGGC 61.237 55.000 0.00 0.00 0.00 5.36
3677 4006 3.202906 TGTGCTACAAGAGGAAACACAC 58.797 45.455 0.00 0.00 32.06 3.82
3727 4056 5.486526 AGATTCAAGTCATTTTCTCGCTCT 58.513 37.500 0.00 0.00 0.00 4.09
3728 4057 5.793026 AGATTCAAGTCATTTTCTCGCTC 57.207 39.130 0.00 0.00 0.00 5.03
3729 4058 6.376978 CAAAGATTCAAGTCATTTTCTCGCT 58.623 36.000 0.00 0.00 0.00 4.93
3730 4059 5.060200 GCAAAGATTCAAGTCATTTTCTCGC 59.940 40.000 0.00 0.00 0.00 5.03
3771 4100 2.683968 GAGCACCACAACAATAGACGA 58.316 47.619 0.00 0.00 0.00 4.20
3772 4101 1.390123 CGAGCACCACAACAATAGACG 59.610 52.381 0.00 0.00 0.00 4.18
3774 4103 2.683968 GACGAGCACCACAACAATAGA 58.316 47.619 0.00 0.00 0.00 1.98
3775 4104 1.390123 CGACGAGCACCACAACAATAG 59.610 52.381 0.00 0.00 0.00 1.73
3776 4105 1.000052 TCGACGAGCACCACAACAATA 60.000 47.619 0.00 0.00 0.00 1.90
3777 4106 0.249699 TCGACGAGCACCACAACAAT 60.250 50.000 0.00 0.00 0.00 2.71
3817 4146 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
3818 4147 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
3819 4148 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
3820 4149 4.243270 AGACAAGTAATTTCGAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
3821 4150 5.404366 TCAAGACAAGTAATTTCGAACGGAG 59.596 40.000 0.00 0.00 0.00 4.63
3822 4151 5.291178 TCAAGACAAGTAATTTCGAACGGA 58.709 37.500 0.00 0.00 0.00 4.69
3823 4152 5.585500 TCAAGACAAGTAATTTCGAACGG 57.415 39.130 0.00 0.00 0.00 4.44
3824 4153 7.886191 TTTTCAAGACAAGTAATTTCGAACG 57.114 32.000 0.00 0.00 0.00 3.95
3825 4154 8.690840 CCATTTTCAAGACAAGTAATTTCGAAC 58.309 33.333 0.00 0.00 0.00 3.95
3826 4155 8.625651 TCCATTTTCAAGACAAGTAATTTCGAA 58.374 29.630 0.00 0.00 0.00 3.71
3827 4156 8.160521 TCCATTTTCAAGACAAGTAATTTCGA 57.839 30.769 0.00 0.00 0.00 3.71
3828 4157 8.853345 CATCCATTTTCAAGACAAGTAATTTCG 58.147 33.333 0.00 0.00 0.00 3.46
3829 4158 9.696917 ACATCCATTTTCAAGACAAGTAATTTC 57.303 29.630 0.00 0.00 0.00 2.17
3833 4162 9.739276 AGATACATCCATTTTCAAGACAAGTAA 57.261 29.630 0.00 0.00 0.00 2.24
3835 4164 9.388506 CTAGATACATCCATTTTCAAGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
3836 4165 9.605275 TCTAGATACATCCATTTTCAAGACAAG 57.395 33.333 0.00 0.00 0.00 3.16
3837 4166 9.958180 TTCTAGATACATCCATTTTCAAGACAA 57.042 29.630 0.00 0.00 0.00 3.18
3838 4167 9.383519 GTTCTAGATACATCCATTTTCAAGACA 57.616 33.333 0.00 0.00 0.00 3.41
3839 4168 9.606631 AGTTCTAGATACATCCATTTTCAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
3848 4177 9.712305 CGGAATTTTAGTTCTAGATACATCCAT 57.288 33.333 0.00 0.00 0.00 3.41
3849 4178 8.920174 TCGGAATTTTAGTTCTAGATACATCCA 58.080 33.333 0.00 0.00 0.00 3.41
3850 4179 9.760077 TTCGGAATTTTAGTTCTAGATACATCC 57.240 33.333 0.00 0.00 0.00 3.51
3852 4181 9.245962 CGTTCGGAATTTTAGTTCTAGATACAT 57.754 33.333 0.00 0.00 0.00 2.29
3853 4182 7.703621 CCGTTCGGAATTTTAGTTCTAGATACA 59.296 37.037 5.19 0.00 0.00 2.29
3854 4183 7.917505 TCCGTTCGGAATTTTAGTTCTAGATAC 59.082 37.037 11.66 0.00 0.00 2.24
3855 4184 7.999679 TCCGTTCGGAATTTTAGTTCTAGATA 58.000 34.615 11.66 0.00 0.00 1.98
3856 4185 6.870769 TCCGTTCGGAATTTTAGTTCTAGAT 58.129 36.000 11.66 0.00 0.00 1.98
3857 4186 6.271488 TCCGTTCGGAATTTTAGTTCTAGA 57.729 37.500 11.66 0.00 0.00 2.43
3858 4187 5.519206 CCTCCGTTCGGAATTTTAGTTCTAG 59.481 44.000 14.79 0.00 33.41 2.43
3859 4188 5.413499 CCTCCGTTCGGAATTTTAGTTCTA 58.587 41.667 14.79 0.00 33.41 2.10
3860 4189 4.251268 CCTCCGTTCGGAATTTTAGTTCT 58.749 43.478 14.79 0.00 33.41 3.01
3861 4190 3.373130 CCCTCCGTTCGGAATTTTAGTTC 59.627 47.826 14.79 0.00 33.41 3.01
3862 4191 3.008266 TCCCTCCGTTCGGAATTTTAGTT 59.992 43.478 14.79 0.00 33.41 2.24
3863 4192 2.568509 TCCCTCCGTTCGGAATTTTAGT 59.431 45.455 14.79 0.00 33.41 2.24
3864 4193 3.195661 CTCCCTCCGTTCGGAATTTTAG 58.804 50.000 14.79 2.64 33.41 1.85
3865 4194 2.568509 ACTCCCTCCGTTCGGAATTTTA 59.431 45.455 14.79 0.00 33.41 1.52
3866 4195 1.350019 ACTCCCTCCGTTCGGAATTTT 59.650 47.619 14.79 0.00 33.41 1.82
3867 4196 0.981943 ACTCCCTCCGTTCGGAATTT 59.018 50.000 14.79 0.00 33.41 1.82
3868 4197 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3869 4198 1.687123 CATACTCCCTCCGTTCGGAAT 59.313 52.381 14.79 2.14 33.41 3.01
3870 4199 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
3871 4200 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
3872 4201 0.102481 CACATACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
3873 4202 0.527817 GCACATACTCCCTCCGTTCG 60.528 60.000 0.00 0.00 0.00 3.95
3874 4203 0.527817 CGCACATACTCCCTCCGTTC 60.528 60.000 0.00 0.00 0.00 3.95
3875 4204 1.515954 CGCACATACTCCCTCCGTT 59.484 57.895 0.00 0.00 0.00 4.44
3876 4205 2.423898 CCGCACATACTCCCTCCGT 61.424 63.158 0.00 0.00 0.00 4.69
3877 4206 2.417516 CCGCACATACTCCCTCCG 59.582 66.667 0.00 0.00 0.00 4.63
3878 4207 2.109181 GCCGCACATACTCCCTCC 59.891 66.667 0.00 0.00 0.00 4.30
3879 4208 1.113517 TAGGCCGCACATACTCCCTC 61.114 60.000 0.00 0.00 0.00 4.30
3880 4209 0.689745 TTAGGCCGCACATACTCCCT 60.690 55.000 0.00 0.00 0.00 4.20
3881 4210 0.249911 CTTAGGCCGCACATACTCCC 60.250 60.000 0.00 0.00 0.00 4.30
3882 4211 0.464452 ACTTAGGCCGCACATACTCC 59.536 55.000 0.00 0.00 0.00 3.85
3883 4212 1.571919 CACTTAGGCCGCACATACTC 58.428 55.000 0.00 0.00 0.00 2.59
3884 4213 0.462047 GCACTTAGGCCGCACATACT 60.462 55.000 0.00 0.00 0.00 2.12
3885 4214 1.436983 GGCACTTAGGCCGCACATAC 61.437 60.000 0.00 0.00 45.40 2.39
3886 4215 1.153249 GGCACTTAGGCCGCACATA 60.153 57.895 0.00 0.00 45.40 2.29
3887 4216 2.438434 GGCACTTAGGCCGCACAT 60.438 61.111 0.00 0.00 45.40 3.21
4003 4332 0.466739 CATGGGCTGCTGCTGGATTA 60.467 55.000 15.64 0.00 39.59 1.75
4097 4447 6.690098 CGATTAAGCTGTTTTGGATGATTCAG 59.310 38.462 0.00 0.00 0.00 3.02
4113 4463 4.563184 GTCTGTGAATCGTTCGATTAAGCT 59.437 41.667 18.20 0.00 35.29 3.74
4126 4476 8.948631 TTGATTCCTTATGTAGTCTGTGAATC 57.051 34.615 0.00 0.00 38.08 2.52
4127 4477 9.739276 TTTTGATTCCTTATGTAGTCTGTGAAT 57.261 29.630 0.00 0.00 0.00 2.57
4132 4482 9.605275 TGAGATTTTGATTCCTTATGTAGTCTG 57.395 33.333 0.00 0.00 0.00 3.51
4133 4483 9.829507 CTGAGATTTTGATTCCTTATGTAGTCT 57.170 33.333 0.00 0.00 0.00 3.24
4135 4485 8.552296 ACCTGAGATTTTGATTCCTTATGTAGT 58.448 33.333 0.00 0.00 0.00 2.73
4137 4487 9.177608 CAACCTGAGATTTTGATTCCTTATGTA 57.822 33.333 0.00 0.00 0.00 2.29
4179 6131 6.424032 AGGGTATTGTTGGAATTCTACCTTC 58.576 40.000 15.22 4.37 31.39 3.46
4191 6143 2.094675 CTCAGGCAAGGGTATTGTTGG 58.905 52.381 0.00 0.00 0.00 3.77
4207 6159 7.425577 TCGTTATTGGCAATGATATTCTCAG 57.574 36.000 22.57 2.90 37.28 3.35
4220 6172 1.199789 CTGCTTTGCTCGTTATTGGCA 59.800 47.619 0.00 0.00 0.00 4.92
4449 6414 1.821332 GCCAGTATGTCAGCAGGCC 60.821 63.158 0.00 0.00 36.17 5.19
4485 6450 2.202743 CGATGATGGTGCGGTCGT 60.203 61.111 0.00 0.00 0.00 4.34
4496 6461 0.107066 TCAGCAATGTGGCCGATGAT 60.107 50.000 0.00 0.00 0.00 2.45
4499 6464 0.322816 AGTTCAGCAATGTGGCCGAT 60.323 50.000 0.00 0.00 0.00 4.18
4606 6571 0.033228 GATCATCTACGCCTGCTGCT 59.967 55.000 0.00 0.00 38.05 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.