Multiple sequence alignment - TraesCS3B01G388700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G388700 chr3B 100.000 5895 0 0 1 5895 611697196 611691302 0.000000e+00 10887.0
1 TraesCS3B01G388700 chr3B 93.079 708 37 10 5198 5895 580068539 580069244 0.000000e+00 1026.0
2 TraesCS3B01G388700 chr3B 94.039 671 37 3 5198 5867 68032349 68031681 0.000000e+00 1014.0
3 TraesCS3B01G388700 chr3B 96.581 117 4 0 4704 4820 607883902 607883786 1.760000e-45 195.0
4 TraesCS3B01G388700 chr3B 94.017 117 7 0 4704 4820 20056566 20056682 1.770000e-40 178.0
5 TraesCS3B01G388700 chr3B 100.000 55 0 0 6126 6180 611691071 611691017 1.100000e-17 102.0
6 TraesCS3B01G388700 chr3B 91.667 48 4 0 202 249 435816887 435816934 4.000000e-07 67.6
7 TraesCS3B01G388700 chr3A 95.052 3052 118 10 1673 4699 603798535 603795492 0.000000e+00 4769.0
8 TraesCS3B01G388700 chr3A 89.149 1152 75 23 546 1671 603799693 603798566 0.000000e+00 1389.0
9 TraesCS3B01G388700 chr3A 90.730 356 29 2 4844 5195 603795479 603795124 7.250000e-129 472.0
10 TraesCS3B01G388700 chr3D 95.411 2506 99 10 1944 4445 461207321 461204828 0.000000e+00 3976.0
11 TraesCS3B01G388700 chr3D 85.012 1688 129 54 276 1865 461209046 461207385 0.000000e+00 1602.0
12 TraesCS3B01G388700 chr3D 92.895 380 23 2 4820 5195 461204459 461204080 3.260000e-152 549.0
13 TraesCS3B01G388700 chr3D 91.154 260 20 2 4444 4701 461204721 461204463 3.540000e-92 350.0
14 TraesCS3B01G388700 chr3D 90.000 50 4 1 201 249 570116480 570116431 5.170000e-06 63.9
15 TraesCS3B01G388700 chr3D 90.698 43 4 0 207 249 571617985 571617943 2.410000e-04 58.4
16 TraesCS3B01G388700 chr3D 92.308 39 3 0 207 245 168173059 168173021 8.650000e-04 56.5
17 TraesCS3B01G388700 chr3D 100.000 30 0 0 251 280 555799913 555799942 8.650000e-04 56.5
18 TraesCS3B01G388700 chr6D 86.638 2814 270 49 1907 4645 461364413 461361631 0.000000e+00 3016.0
19 TraesCS3B01G388700 chr6D 80.168 716 71 33 798 1457 461366080 461365380 2.610000e-128 470.0
20 TraesCS3B01G388700 chr6D 81.769 373 49 8 4820 5191 461361538 461361184 1.680000e-75 294.0
21 TraesCS3B01G388700 chr6D 86.047 129 14 4 1024 1148 11769773 11769901 1.080000e-27 135.0
22 TraesCS3B01G388700 chr6D 92.308 39 3 0 207 245 84620296 84620334 8.650000e-04 56.5
23 TraesCS3B01G388700 chr6D 92.308 39 3 0 207 245 84620395 84620357 8.650000e-04 56.5
24 TraesCS3B01G388700 chr6D 96.970 33 0 1 246 278 2956592 2956561 3.000000e-03 54.7
25 TraesCS3B01G388700 chr6D 100.000 29 0 0 251 279 58433781 58433753 3.000000e-03 54.7
26 TraesCS3B01G388700 chr6D 100.000 29 0 0 251 279 471540030 471540002 3.000000e-03 54.7
27 TraesCS3B01G388700 chr6B 86.130 2819 277 62 1907 4644 702834871 702832086 0.000000e+00 2935.0
28 TraesCS3B01G388700 chr6B 94.583 683 31 6 5198 5878 356706099 356706777 0.000000e+00 1051.0
29 TraesCS3B01G388700 chr6B 94.815 675 31 4 5195 5867 356696216 356696888 0.000000e+00 1050.0
30 TraesCS3B01G388700 chr6B 79.565 690 92 33 798 1457 702836514 702835844 1.220000e-121 448.0
31 TraesCS3B01G388700 chr6B 73.521 1352 284 52 3116 4406 21433761 21432423 4.400000e-121 446.0
32 TraesCS3B01G388700 chr6B 82.933 375 51 6 4820 5190 702831990 702831625 5.970000e-85 326.0
33 TraesCS3B01G388700 chr6A 86.073 1752 160 34 2996 4682 607959941 607958209 0.000000e+00 1807.0
34 TraesCS3B01G388700 chr6A 84.982 1112 114 26 1907 2994 607961112 607960030 0.000000e+00 1079.0
35 TraesCS3B01G388700 chr6A 76.400 750 159 11 3662 4396 13065222 13065968 7.510000e-104 388.0
36 TraesCS3B01G388700 chr6A 81.124 498 45 25 686 1155 607962930 607962454 2.740000e-93 353.0
37 TraesCS3B01G388700 chr6A 84.244 311 39 5 4878 5187 607958131 607957830 1.680000e-75 294.0
38 TraesCS3B01G388700 chr6A 87.826 115 9 5 1031 1141 13063122 13063235 5.030000e-26 130.0
39 TraesCS3B01G388700 chr6A 80.921 152 20 6 798 945 607966173 607966027 1.820000e-20 111.0
40 TraesCS3B01G388700 chr6A 87.013 77 5 3 207 279 585001228 585001303 1.430000e-11 82.4
41 TraesCS3B01G388700 chr1B 95.136 699 32 2 5198 5895 497795062 497795759 0.000000e+00 1101.0
42 TraesCS3B01G388700 chr1B 93.539 681 43 1 5198 5877 25853720 25854400 0.000000e+00 1013.0
43 TraesCS3B01G388700 chr1B 92.727 55 4 0 6126 6180 497796196 497796250 5.140000e-11 80.5
44 TraesCS3B01G388700 chr2B 93.030 703 39 6 5198 5891 571130371 571129670 0.000000e+00 1018.0
45 TraesCS3B01G388700 chr2B 92.063 126 10 0 4698 4823 715868298 715868173 1.770000e-40 178.0
46 TraesCS3B01G388700 chr2B 92.683 123 8 1 4699 4820 96089964 96090086 6.370000e-40 176.0
47 TraesCS3B01G388700 chr5B 93.304 687 36 8 5198 5877 620550609 620551292 0.000000e+00 1005.0
48 TraesCS3B01G388700 chr5B 93.220 118 8 0 4703 4820 407639561 407639444 2.290000e-39 174.0
49 TraesCS3B01G388700 chr4B 92.919 692 44 5 5198 5887 407651233 407650545 0.000000e+00 1002.0
50 TraesCS3B01G388700 chr4B 92.683 41 1 2 251 289 88311162 88311122 2.410000e-04 58.4
51 TraesCS3B01G388700 chr5A 92.188 128 10 0 4700 4827 476640518 476640391 1.370000e-41 182.0
52 TraesCS3B01G388700 chr4A 93.333 120 8 0 4701 4820 727413054 727413173 1.770000e-40 178.0
53 TraesCS3B01G388700 chr7B 92.562 121 9 0 4700 4820 411754682 411754802 2.290000e-39 174.0
54 TraesCS3B01G388700 chr7B 91.129 124 11 0 4701 4824 677755799 677755922 1.070000e-37 169.0
55 TraesCS3B01G388700 chr7B 89.091 55 4 2 196 249 248548875 248548822 4.000000e-07 67.6
56 TraesCS3B01G388700 chr5D 87.342 79 6 3 204 278 549851434 549851356 3.070000e-13 87.9
57 TraesCS3B01G388700 chr5D 85.714 70 10 0 206 275 434034238 434034307 2.390000e-09 75.0
58 TraesCS3B01G388700 chr2A 95.349 43 2 0 207 249 51498639 51498597 1.110000e-07 69.4
59 TraesCS3B01G388700 chr2A 94.737 38 0 2 246 282 161948646 161948682 2.410000e-04 58.4
60 TraesCS3B01G388700 chr2A 97.143 35 0 1 246 280 451815901 451815868 2.410000e-04 58.4
61 TraesCS3B01G388700 chr2A 100.000 31 0 0 251 281 694455360 694455390 2.410000e-04 58.4
62 TraesCS3B01G388700 chr1D 84.722 72 3 3 207 278 458432830 458432767 1.440000e-06 65.8
63 TraesCS3B01G388700 chr1D 92.857 42 3 0 204 245 474453307 474453348 1.860000e-05 62.1
64 TraesCS3B01G388700 chr1D 100.000 30 0 0 250 279 450147822 450147851 8.650000e-04 56.5
65 TraesCS3B01G388700 chr1D 96.970 33 0 1 246 278 212503033 212503064 3.000000e-03 54.7
66 TraesCS3B01G388700 chr1D 100.000 29 0 0 251 279 307349215 307349243 3.000000e-03 54.7
67 TraesCS3B01G388700 chr1D 100.000 28 0 0 251 278 435800480 435800507 1.100000e-02 52.8
68 TraesCS3B01G388700 chrUn 90.000 50 4 1 201 249 287061834 287061785 5.170000e-06 63.9
69 TraesCS3B01G388700 chrUn 96.970 33 0 1 246 278 201356628 201356659 3.000000e-03 54.7
70 TraesCS3B01G388700 chr7D 93.023 43 3 0 207 249 474349146 474349104 5.170000e-06 63.9
71 TraesCS3B01G388700 chr7D 94.872 39 2 0 207 245 530672114 530672076 1.860000e-05 62.1
72 TraesCS3B01G388700 chr7D 87.273 55 5 1 218 270 614671445 614671391 1.860000e-05 62.1
73 TraesCS3B01G388700 chr1A 92.857 42 3 0 204 245 399505737 399505778 1.860000e-05 62.1
74 TraesCS3B01G388700 chr1A 88.462 52 4 1 206 257 562588707 562588756 1.860000e-05 62.1
75 TraesCS3B01G388700 chr1A 96.970 33 0 1 246 278 268916591 268916622 3.000000e-03 54.7
76 TraesCS3B01G388700 chr4D 82.609 69 8 1 207 275 282196988 282196924 2.410000e-04 58.4
77 TraesCS3B01G388700 chr4D 96.970 33 0 1 246 278 48595845 48595876 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G388700 chr3B 611691017 611697196 6179 True 5494.500000 10887 100.000000 1 6180 2 chr3B.!!$R3 6179
1 TraesCS3B01G388700 chr3B 580068539 580069244 705 False 1026.000000 1026 93.079000 5198 5895 1 chr3B.!!$F3 697
2 TraesCS3B01G388700 chr3B 68031681 68032349 668 True 1014.000000 1014 94.039000 5198 5867 1 chr3B.!!$R1 669
3 TraesCS3B01G388700 chr3A 603795124 603799693 4569 True 2210.000000 4769 91.643667 546 5195 3 chr3A.!!$R1 4649
4 TraesCS3B01G388700 chr3D 461204080 461209046 4966 True 1619.250000 3976 91.118000 276 5195 4 chr3D.!!$R4 4919
5 TraesCS3B01G388700 chr6D 461361184 461366080 4896 True 1260.000000 3016 82.858333 798 5191 3 chr6D.!!$R5 4393
6 TraesCS3B01G388700 chr6B 702831625 702836514 4889 True 1236.333333 2935 82.876000 798 5190 3 chr6B.!!$R2 4392
7 TraesCS3B01G388700 chr6B 356706099 356706777 678 False 1051.000000 1051 94.583000 5198 5878 1 chr6B.!!$F2 680
8 TraesCS3B01G388700 chr6B 356696216 356696888 672 False 1050.000000 1050 94.815000 5195 5867 1 chr6B.!!$F1 672
9 TraesCS3B01G388700 chr6B 21432423 21433761 1338 True 446.000000 446 73.521000 3116 4406 1 chr6B.!!$R1 1290
10 TraesCS3B01G388700 chr6A 607957830 607966173 8343 True 728.800000 1807 83.468800 686 5187 5 chr6A.!!$R1 4501
11 TraesCS3B01G388700 chr6A 13063122 13065968 2846 False 259.000000 388 82.113000 1031 4396 2 chr6A.!!$F2 3365
12 TraesCS3B01G388700 chr1B 25853720 25854400 680 False 1013.000000 1013 93.539000 5198 5877 1 chr1B.!!$F1 679
13 TraesCS3B01G388700 chr1B 497795062 497796250 1188 False 590.750000 1101 93.931500 5198 6180 2 chr1B.!!$F2 982
14 TraesCS3B01G388700 chr2B 571129670 571130371 701 True 1018.000000 1018 93.030000 5198 5891 1 chr2B.!!$R1 693
15 TraesCS3B01G388700 chr5B 620550609 620551292 683 False 1005.000000 1005 93.304000 5198 5877 1 chr5B.!!$F1 679
16 TraesCS3B01G388700 chr4B 407650545 407651233 688 True 1002.000000 1002 92.919000 5198 5887 1 chr4B.!!$R2 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.321653 AGCGTTTGGATCACCACTCC 60.322 55.000 0.00 0.00 46.80 3.85 F
663 691 0.597568 CCAAAAGCAATCACCGCTCA 59.402 50.000 0.00 0.00 39.29 4.26 F
2089 5751 0.391130 ACTACGCCGTTCATGTGCAT 60.391 50.000 0.00 0.00 0.00 3.96 F
2329 5994 2.358898 GCATGCCCTTCGAATTGTACAT 59.641 45.455 6.36 0.00 0.00 2.29 F
3299 7125 1.230324 AGTCAAAGAAGCTCGCAACC 58.770 50.000 0.00 0.00 0.00 3.77 F
4328 8236 2.281345 GGGCTGATGGCATCGAGG 60.281 66.667 21.65 14.92 44.01 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 5719 0.389426 ACGGCGTAGTACTTTGCAGG 60.389 55.000 12.58 12.8 0.0 4.85 R
2525 6197 3.473923 AGACGACTACTACTAGGAGCC 57.526 52.381 0.36 0.0 0.0 4.70 R
3282 7096 0.531974 ACGGTTGCGAGCTTCTTTGA 60.532 50.000 0.90 0.0 0.0 2.69 R
4003 7896 1.480789 TAGATGCACGCTGGTTCCTA 58.519 50.000 0.00 0.0 0.0 2.94 R
4701 8787 0.038744 TTTCGGACGGAGGGAGTAGT 59.961 55.000 0.00 0.0 0.0 2.73 R
5404 9500 0.253044 ATGTGGGAGTGTCGGATTGG 59.747 55.000 0.00 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 8.746530 AGAGAGAAAATTATCATGCATGTTTGT 58.253 29.630 25.43 16.14 0.00 2.83
63 64 7.828508 ATCATGCATGTTTGTATATTGAGGT 57.171 32.000 25.43 0.00 0.00 3.85
64 65 7.030075 TCATGCATGTTTGTATATTGAGGTG 57.970 36.000 25.43 0.00 0.00 4.00
65 66 5.833406 TGCATGTTTGTATATTGAGGTGG 57.167 39.130 0.00 0.00 0.00 4.61
67 68 4.644685 GCATGTTTGTATATTGAGGTGGGT 59.355 41.667 0.00 0.00 0.00 4.51
68 69 5.127031 GCATGTTTGTATATTGAGGTGGGTT 59.873 40.000 0.00 0.00 0.00 4.11
69 70 6.320164 GCATGTTTGTATATTGAGGTGGGTTA 59.680 38.462 0.00 0.00 0.00 2.85
71 72 8.912988 CATGTTTGTATATTGAGGTGGGTTATT 58.087 33.333 0.00 0.00 0.00 1.40
73 74 8.962679 TGTTTGTATATTGAGGTGGGTTATTTC 58.037 33.333 0.00 0.00 0.00 2.17
74 75 8.962679 GTTTGTATATTGAGGTGGGTTATTTCA 58.037 33.333 0.00 0.00 0.00 2.69
75 76 9.707957 TTTGTATATTGAGGTGGGTTATTTCAT 57.292 29.630 0.00 0.00 0.00 2.57
79 80 6.655078 ATTGAGGTGGGTTATTTCATATGC 57.345 37.500 0.00 0.00 0.00 3.14
80 81 5.122707 TGAGGTGGGTTATTTCATATGCA 57.877 39.130 0.00 0.00 0.00 3.96
81 82 5.704354 TGAGGTGGGTTATTTCATATGCAT 58.296 37.500 3.79 3.79 0.00 3.96
82 83 6.135454 TGAGGTGGGTTATTTCATATGCATT 58.865 36.000 3.54 0.00 0.00 3.56
83 84 6.040729 TGAGGTGGGTTATTTCATATGCATTG 59.959 38.462 3.54 3.42 0.00 2.82
84 85 4.990426 GGTGGGTTATTTCATATGCATTGC 59.010 41.667 3.54 0.46 0.00 3.56
85 86 5.453057 GGTGGGTTATTTCATATGCATTGCA 60.453 40.000 14.72 14.72 44.86 4.08
97 98 3.224884 TGCATTGCATGTTGATGTGAG 57.775 42.857 7.38 0.00 31.71 3.51
99 100 2.536365 CATTGCATGTTGATGTGAGCC 58.464 47.619 0.00 0.00 31.50 4.70
100 101 1.913778 TTGCATGTTGATGTGAGCCT 58.086 45.000 0.00 0.00 31.50 4.58
101 102 1.913778 TGCATGTTGATGTGAGCCTT 58.086 45.000 0.00 0.00 31.50 4.35
102 103 2.241160 TGCATGTTGATGTGAGCCTTT 58.759 42.857 0.00 0.00 31.50 3.11
104 105 3.069872 TGCATGTTGATGTGAGCCTTTTT 59.930 39.130 0.00 0.00 31.50 1.94
105 106 3.676646 GCATGTTGATGTGAGCCTTTTTC 59.323 43.478 0.00 0.00 31.50 2.29
106 107 4.796946 GCATGTTGATGTGAGCCTTTTTCA 60.797 41.667 0.00 0.00 31.50 2.69
107 108 5.475719 CATGTTGATGTGAGCCTTTTTCAT 58.524 37.500 0.00 0.00 0.00 2.57
108 109 4.873817 TGTTGATGTGAGCCTTTTTCATG 58.126 39.130 0.00 0.00 0.00 3.07
110 111 2.892215 TGATGTGAGCCTTTTTCATGCA 59.108 40.909 0.00 0.00 0.00 3.96
111 112 3.512329 TGATGTGAGCCTTTTTCATGCAT 59.488 39.130 0.00 0.00 0.00 3.96
112 113 3.306917 TGTGAGCCTTTTTCATGCATG 57.693 42.857 21.07 21.07 0.00 4.06
113 114 2.629137 TGTGAGCCTTTTTCATGCATGT 59.371 40.909 25.43 4.14 0.00 3.21
114 115 3.069872 TGTGAGCCTTTTTCATGCATGTT 59.930 39.130 25.43 0.00 0.00 2.71
115 116 3.430895 GTGAGCCTTTTTCATGCATGTTG 59.569 43.478 25.43 12.01 0.00 3.33
146 147 8.751302 TTTGCATGATGATATGTCATATTTGC 57.249 30.769 18.67 18.67 44.96 3.68
147 148 7.455641 TGCATGATGATATGTCATATTTGCA 57.544 32.000 21.78 21.78 44.96 4.08
148 149 7.535139 TGCATGATGATATGTCATATTTGCAG 58.465 34.615 21.78 6.36 44.96 4.41
149 150 6.972901 GCATGATGATATGTCATATTTGCAGG 59.027 38.462 19.73 11.25 44.96 4.85
151 152 8.520351 CATGATGATATGTCATATTTGCAGGTT 58.480 33.333 4.77 0.00 44.96 3.50
152 153 7.878036 TGATGATATGTCATATTTGCAGGTTG 58.122 34.615 4.77 0.00 44.96 3.77
154 155 8.645814 ATGATATGTCATATTTGCAGGTTGAT 57.354 30.769 2.67 0.00 43.18 2.57
156 157 9.571816 TGATATGTCATATTTGCAGGTTGATAA 57.428 29.630 6.79 0.00 0.00 1.75
170 171 8.997323 TGCAGGTTGATAAAAATAATTTTGTGG 58.003 29.630 0.00 0.00 39.09 4.17
171 172 8.450180 GCAGGTTGATAAAAATAATTTTGTGGG 58.550 33.333 0.00 0.00 39.09 4.61
172 173 8.945057 CAGGTTGATAAAAATAATTTTGTGGGG 58.055 33.333 0.00 0.00 39.09 4.96
173 174 7.609918 AGGTTGATAAAAATAATTTTGTGGGGC 59.390 33.333 0.00 0.00 39.09 5.80
174 175 7.609918 GGTTGATAAAAATAATTTTGTGGGGCT 59.390 33.333 0.00 0.00 39.09 5.19
175 176 9.008965 GTTGATAAAAATAATTTTGTGGGGCTT 57.991 29.630 0.00 0.00 39.09 4.35
186 187 8.658840 AATTTTGTGGGGCTTAACTATTTAGA 57.341 30.769 0.00 0.00 0.00 2.10
189 190 9.930158 TTTTGTGGGGCTTAACTATTTAGATAT 57.070 29.630 0.00 0.00 0.00 1.63
192 193 9.610104 TGTGGGGCTTAACTATTTAGATATAGA 57.390 33.333 0.00 0.00 33.31 1.98
243 244 8.506168 AAAGAAATATAAGAGCGTTTGGATCA 57.494 30.769 0.00 0.00 32.03 2.92
244 245 7.484035 AGAAATATAAGAGCGTTTGGATCAC 57.516 36.000 0.00 0.00 32.03 3.06
245 246 6.483640 AGAAATATAAGAGCGTTTGGATCACC 59.516 38.462 0.00 0.00 32.03 4.02
246 247 3.627395 ATAAGAGCGTTTGGATCACCA 57.373 42.857 0.00 0.00 45.34 4.17
247 248 1.523758 AAGAGCGTTTGGATCACCAC 58.476 50.000 0.00 0.00 46.80 4.16
250 251 0.321653 AGCGTTTGGATCACCACTCC 60.322 55.000 0.00 0.00 46.80 3.85
251 252 0.321653 GCGTTTGGATCACCACTCCT 60.322 55.000 0.00 0.00 46.80 3.69
252 253 1.882352 GCGTTTGGATCACCACTCCTT 60.882 52.381 0.00 0.00 46.80 3.36
253 254 2.614481 GCGTTTGGATCACCACTCCTTA 60.614 50.000 0.00 0.00 46.80 2.69
255 256 4.682320 GCGTTTGGATCACCACTCCTTATA 60.682 45.833 0.00 0.00 46.80 0.98
256 257 5.611374 CGTTTGGATCACCACTCCTTATAT 58.389 41.667 0.00 0.00 46.80 0.86
258 259 6.542370 CGTTTGGATCACCACTCCTTATATTT 59.458 38.462 0.00 0.00 46.80 1.40
260 261 7.451731 TTGGATCACCACTCCTTATATTTCT 57.548 36.000 0.00 0.00 46.80 2.52
261 262 7.451731 TGGATCACCACTCCTTATATTTCTT 57.548 36.000 0.00 0.00 41.77 2.52
262 263 7.872138 TGGATCACCACTCCTTATATTTCTTT 58.128 34.615 0.00 0.00 41.77 2.52
263 264 8.998814 TGGATCACCACTCCTTATATTTCTTTA 58.001 33.333 0.00 0.00 41.77 1.85
264 265 9.274206 GGATCACCACTCCTTATATTTCTTTAC 57.726 37.037 0.00 0.00 35.97 2.01
266 267 9.838339 ATCACCACTCCTTATATTTCTTTACAG 57.162 33.333 0.00 0.00 0.00 2.74
267 268 9.042450 TCACCACTCCTTATATTTCTTTACAGA 57.958 33.333 0.00 0.00 0.00 3.41
268 269 9.319143 CACCACTCCTTATATTTCTTTACAGAG 57.681 37.037 0.00 0.00 0.00 3.35
269 270 8.487028 ACCACTCCTTATATTTCTTTACAGAGG 58.513 37.037 0.00 0.00 0.00 3.69
270 271 7.934120 CCACTCCTTATATTTCTTTACAGAGGG 59.066 40.741 0.00 0.00 0.00 4.30
271 272 8.705594 CACTCCTTATATTTCTTTACAGAGGGA 58.294 37.037 0.00 0.00 0.00 4.20
272 273 8.929487 ACTCCTTATATTTCTTTACAGAGGGAG 58.071 37.037 0.00 0.00 39.66 4.30
273 274 8.855804 TCCTTATATTTCTTTACAGAGGGAGT 57.144 34.615 0.00 0.00 0.00 3.85
319 320 3.495434 TTTTGGCTCGGAGTTTTAGGA 57.505 42.857 6.90 0.00 0.00 2.94
335 336 2.397044 AGGATGCCCCAGTTTTGAAA 57.603 45.000 0.00 0.00 37.41 2.69
339 340 4.843516 AGGATGCCCCAGTTTTGAAATTTA 59.156 37.500 0.00 0.00 37.41 1.40
341 342 5.512232 GGATGCCCCAGTTTTGAAATTTACA 60.512 40.000 0.00 0.00 34.14 2.41
363 364 6.947258 ACAAAAATGAGCCTTTTGAATTTCG 58.053 32.000 13.38 0.00 43.42 3.46
373 374 4.621034 CCTTTTGAATTTCGACCAAATCCG 59.379 41.667 0.00 0.00 33.16 4.18
412 435 8.504811 TCCATAGGGATGTACTCATGATAAAA 57.495 34.615 0.00 0.00 38.64 1.52
492 515 7.855545 AGCTCACATATTGAACACGATATTTC 58.144 34.615 0.00 0.00 32.21 2.17
506 532 4.466828 CGATATTTCGTGCATCCCAAATC 58.533 43.478 0.00 0.00 40.53 2.17
520 546 6.912591 GCATCCCAAATCTTAACGTATTTCAG 59.087 38.462 0.00 0.00 0.00 3.02
544 570 7.357206 CAGCATGAAATTTTACACACGTGTAAC 60.357 37.037 22.90 10.34 46.57 2.50
567 593 3.939740 ACATCCCTATGCACATGTCTT 57.060 42.857 0.00 0.00 36.50 3.01
660 688 3.860717 GCCAAAAGCAATCACCGC 58.139 55.556 0.00 0.00 42.97 5.68
661 689 1.290009 GCCAAAAGCAATCACCGCT 59.710 52.632 0.00 0.00 42.98 5.52
662 690 0.733909 GCCAAAAGCAATCACCGCTC 60.734 55.000 0.00 0.00 39.29 5.03
663 691 0.597568 CCAAAAGCAATCACCGCTCA 59.402 50.000 0.00 0.00 39.29 4.26
664 692 1.000385 CCAAAAGCAATCACCGCTCAA 60.000 47.619 0.00 0.00 39.29 3.02
680 708 4.445385 CCGCTCAAAAAGAATGAAAAGGTG 59.555 41.667 0.00 0.00 0.00 4.00
683 711 6.074676 CGCTCAAAAAGAATGAAAAGGTGAAG 60.075 38.462 0.00 0.00 0.00 3.02
1041 3664 0.824109 AGCTGCTCTACATTGCCGTA 59.176 50.000 0.00 0.00 0.00 4.02
1142 3768 2.617274 GCCACGCCTTCAAGGTCAC 61.617 63.158 5.03 0.00 37.80 3.67
1166 3829 2.844348 CCCTTCCCCTCTTTGCTACTTA 59.156 50.000 0.00 0.00 0.00 2.24
1262 3962 3.119136 GCTCGCGTTATACCACGATTAAG 59.881 47.826 5.77 0.00 43.15 1.85
1265 3965 4.035558 TCGCGTTATACCACGATTAAGACT 59.964 41.667 5.77 0.00 43.15 3.24
1282 3986 1.301401 CTTGAGGACGAAACCGCCA 60.301 57.895 0.00 0.00 34.73 5.69
1359 4262 5.181245 GCATAGTGTTCTGGTGCTTTTTCTA 59.819 40.000 0.00 0.00 35.38 2.10
1401 4461 5.670792 TGGTTCGAATGATGTAGTTAGGT 57.329 39.130 0.00 0.00 0.00 3.08
1433 4493 1.005867 TGTTTGGCGGTAGGACGAC 60.006 57.895 0.00 0.00 43.68 4.34
1458 4518 3.244422 TGACATGGGAAGGTGACAACTAC 60.244 47.826 0.00 0.00 0.00 2.73
1459 4519 2.708861 ACATGGGAAGGTGACAACTACA 59.291 45.455 0.00 0.00 0.00 2.74
1460 4520 3.244561 ACATGGGAAGGTGACAACTACAG 60.245 47.826 0.00 0.00 0.00 2.74
1461 4521 2.684943 TGGGAAGGTGACAACTACAGA 58.315 47.619 0.00 0.00 0.00 3.41
1462 4522 3.042682 TGGGAAGGTGACAACTACAGAA 58.957 45.455 0.00 0.00 0.00 3.02
1463 4523 3.181458 TGGGAAGGTGACAACTACAGAAC 60.181 47.826 0.00 0.00 0.00 3.01
1464 4524 3.071167 GGGAAGGTGACAACTACAGAACT 59.929 47.826 0.00 0.00 0.00 3.01
1511 4571 4.000988 GTGTTCATCGGTGTATCCAAACT 58.999 43.478 0.00 0.00 35.57 2.66
1525 4589 1.173913 CAAACTTCCCCCGGATCAAC 58.826 55.000 0.73 0.00 0.00 3.18
1533 4597 1.811266 CCCGGATCAACTCACTGCG 60.811 63.158 0.73 0.00 0.00 5.18
1560 4629 7.912056 TGGATTAGACAGAAAAACTCTCATG 57.088 36.000 0.00 0.00 29.07 3.07
1616 4708 3.993081 GGATTGGATCTGATTCAGCGTAG 59.007 47.826 8.89 0.00 0.00 3.51
1635 4738 4.630069 CGTAGTTCGGATGTCATTCCTTTT 59.370 41.667 0.00 0.00 33.30 2.27
1671 4775 4.818534 TGTTGCAGACTGAATTTGTCTC 57.181 40.909 6.65 7.87 42.21 3.36
1702 4835 4.022416 TCCCGAAATTGTCTTTTGGTGATG 60.022 41.667 3.86 0.00 32.26 3.07
1768 4931 6.071952 TGTGTGAATTGCTATTCCTTTCTTCC 60.072 38.462 16.61 0.00 39.56 3.46
1850 5018 2.037381 TGCCTTGCATGATCTTTTTGCA 59.963 40.909 0.00 8.46 44.12 4.08
1887 5076 6.485984 GCTCTGTATCTTGGAATTGACATGAT 59.514 38.462 0.00 10.84 36.85 2.45
1962 5617 2.306805 TGCATCTTGGAGTTGACCTGAT 59.693 45.455 0.00 0.00 0.00 2.90
2046 5705 3.508762 GCGTATCTTCTTTTCCTCGTCA 58.491 45.455 0.00 0.00 0.00 4.35
2060 5719 4.617959 TCCTCGTCATCCATTTCGATAAC 58.382 43.478 0.00 0.00 0.00 1.89
2089 5751 0.391130 ACTACGCCGTTCATGTGCAT 60.391 50.000 0.00 0.00 0.00 3.96
2274 5936 4.159135 GCATTGGGGAAGATGCTAATATGG 59.841 45.833 1.36 0.00 43.98 2.74
2329 5994 2.358898 GCATGCCCTTCGAATTGTACAT 59.641 45.455 6.36 0.00 0.00 2.29
2546 6218 3.740764 CGGCTCCTAGTAGTAGTCGTCTT 60.741 52.174 8.47 0.00 33.84 3.01
2592 6264 8.137437 GGCTTATGATAAATGTGTGTGCTTAAT 58.863 33.333 0.00 0.00 0.00 1.40
2604 6276 5.920273 GTGTGTGCTTAATGTGCTTTGTTAT 59.080 36.000 0.00 0.00 0.00 1.89
2667 6340 3.548770 AGCACAGTACATGCATTATGCT 58.451 40.909 18.44 0.00 45.92 3.79
2878 6598 9.559958 CTATCATCTTTGTTGGTATGTTGTTTC 57.440 33.333 0.00 0.00 0.00 2.78
3096 6910 3.969287 AACTGATGCTGACTCTTGCTA 57.031 42.857 0.00 0.00 0.00 3.49
3282 7096 3.694072 TGTTGCAGTTGCTAAGTCAAAGT 59.306 39.130 5.62 0.00 42.66 2.66
3299 7125 1.230324 AGTCAAAGAAGCTCGCAACC 58.770 50.000 0.00 0.00 0.00 3.77
3362 7206 5.131642 TGTTAAATCTCATCATGGCTCCTCT 59.868 40.000 0.00 0.00 0.00 3.69
3973 7866 5.157940 AGCAGTTGTATGATCTCAACACT 57.842 39.130 21.28 17.02 44.08 3.55
4003 7896 7.126421 ACTGTTTCTGTAGTGGATGAGGAATAT 59.874 37.037 0.00 0.00 0.00 1.28
4210 8115 3.260632 AGGTTAACCCATCACAAATTGGC 59.739 43.478 21.30 0.00 36.42 4.52
4222 8127 3.074412 ACAAATTGGCAAGGTAGAGTCG 58.926 45.455 5.96 0.00 0.00 4.18
4328 8236 2.281345 GGGCTGATGGCATCGAGG 60.281 66.667 21.65 14.92 44.01 4.63
4343 8251 2.515854 TCGAGGCAGGTGGTAGATATC 58.484 52.381 0.00 0.00 0.00 1.63
4468 8507 6.595682 AGTAGCTGGCTGATGTTATACATTT 58.404 36.000 5.25 0.00 39.27 2.32
4483 8522 9.438228 TGTTATACATTTCCAATCTAACGAACA 57.562 29.630 0.00 0.00 0.00 3.18
4492 8531 5.421056 TCCAATCTAACGAACACTATGTCCT 59.579 40.000 0.00 0.00 0.00 3.85
4493 8532 6.070995 TCCAATCTAACGAACACTATGTCCTT 60.071 38.462 0.00 0.00 0.00 3.36
4494 8533 6.036083 CCAATCTAACGAACACTATGTCCTTG 59.964 42.308 0.00 0.00 0.00 3.61
4495 8534 5.970317 TCTAACGAACACTATGTCCTTGA 57.030 39.130 0.00 0.00 0.00 3.02
4546 8590 3.951775 AGTGAAGAAGAAGCTGACGAT 57.048 42.857 0.00 0.00 0.00 3.73
4547 8591 4.264460 AGTGAAGAAGAAGCTGACGATT 57.736 40.909 0.00 0.00 0.00 3.34
4570 8614 3.754850 CACCTGATGCTGAAACTGATGAA 59.245 43.478 0.00 0.00 0.00 2.57
4597 8641 6.939622 TCTAACTGATGAAGAAAGAGATGCA 58.060 36.000 0.00 0.00 0.00 3.96
4633 8683 6.038161 CGACTATGTTATCCAGCAATTTTCCA 59.962 38.462 0.00 0.00 0.00 3.53
4708 8794 5.206587 TGGACTAACCAGGAATACTACTCC 58.793 45.833 0.00 0.00 44.64 3.85
4709 8795 4.588106 GGACTAACCAGGAATACTACTCCC 59.412 50.000 0.00 0.00 38.79 4.30
4710 8796 5.456779 GACTAACCAGGAATACTACTCCCT 58.543 45.833 0.00 0.00 32.95 4.20
4711 8797 5.456779 ACTAACCAGGAATACTACTCCCTC 58.543 45.833 0.00 0.00 32.95 4.30
4712 8798 3.331718 ACCAGGAATACTACTCCCTCC 57.668 52.381 0.00 0.00 32.95 4.30
4713 8799 2.240279 CCAGGAATACTACTCCCTCCG 58.760 57.143 0.00 0.00 32.95 4.63
4714 8800 2.424523 CCAGGAATACTACTCCCTCCGT 60.425 54.545 0.00 0.00 32.95 4.69
4715 8801 2.885894 CAGGAATACTACTCCCTCCGTC 59.114 54.545 0.00 0.00 32.95 4.79
4716 8802 2.158490 AGGAATACTACTCCCTCCGTCC 60.158 54.545 0.00 0.00 32.95 4.79
4717 8803 1.878734 GAATACTACTCCCTCCGTCCG 59.121 57.143 0.00 0.00 0.00 4.79
4718 8804 1.135094 ATACTACTCCCTCCGTCCGA 58.865 55.000 0.00 0.00 0.00 4.55
4719 8805 0.911769 TACTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
4720 8806 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
4721 8807 1.341778 ACTACTCCCTCCGTCCGAAAT 60.342 52.381 0.00 0.00 0.00 2.17
4722 8808 1.755380 CTACTCCCTCCGTCCGAAATT 59.245 52.381 0.00 0.00 0.00 1.82
4723 8809 1.856629 ACTCCCTCCGTCCGAAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4724 8810 1.479730 ACTCCCTCCGTCCGAAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4725 8811 1.755380 CTCCCTCCGTCCGAAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4726 8812 1.753073 TCCCTCCGTCCGAAATTACTC 59.247 52.381 0.00 0.00 0.00 2.59
4727 8813 1.535437 CCCTCCGTCCGAAATTACTCG 60.535 57.143 0.00 0.00 38.58 4.18
4728 8814 1.133790 CCTCCGTCCGAAATTACTCGT 59.866 52.381 0.00 0.00 37.11 4.18
4729 8815 2.448219 CTCCGTCCGAAATTACTCGTC 58.552 52.381 0.00 0.00 37.11 4.20
4730 8816 1.186030 CCGTCCGAAATTACTCGTCG 58.814 55.000 0.00 3.93 37.11 5.12
4738 8824 5.054780 CGAAATTACTCGTCGGAGAAATG 57.945 43.478 0.00 0.00 43.27 2.32
4739 8825 4.796830 CGAAATTACTCGTCGGAGAAATGA 59.203 41.667 0.00 0.00 43.27 2.57
4740 8826 5.287752 CGAAATTACTCGTCGGAGAAATGAA 59.712 40.000 0.00 0.00 43.27 2.57
4741 8827 6.019801 CGAAATTACTCGTCGGAGAAATGAAT 60.020 38.462 0.00 0.00 43.27 2.57
4742 8828 7.166970 CGAAATTACTCGTCGGAGAAATGAATA 59.833 37.037 0.00 0.00 43.27 1.75
4743 8829 8.712285 AAATTACTCGTCGGAGAAATGAATAA 57.288 30.769 0.00 0.00 43.27 1.40
4744 8830 8.712285 AATTACTCGTCGGAGAAATGAATAAA 57.288 30.769 0.00 0.00 43.27 1.40
4745 8831 8.712285 ATTACTCGTCGGAGAAATGAATAAAA 57.288 30.769 0.00 0.00 43.27 1.52
4746 8832 8.537049 TTACTCGTCGGAGAAATGAATAAAAA 57.463 30.769 0.00 0.00 43.27 1.94
4747 8833 7.611213 ACTCGTCGGAGAAATGAATAAAAAT 57.389 32.000 0.00 0.00 43.27 1.82
4748 8834 7.464358 ACTCGTCGGAGAAATGAATAAAAATG 58.536 34.615 0.00 0.00 43.27 2.32
4749 8835 7.333423 ACTCGTCGGAGAAATGAATAAAAATGA 59.667 33.333 0.00 0.00 43.27 2.57
4750 8836 8.035165 TCGTCGGAGAAATGAATAAAAATGAA 57.965 30.769 0.00 0.00 39.69 2.57
4751 8837 8.673711 TCGTCGGAGAAATGAATAAAAATGAAT 58.326 29.630 0.00 0.00 39.69 2.57
4752 8838 8.736742 CGTCGGAGAAATGAATAAAAATGAATG 58.263 33.333 0.00 0.00 39.69 2.67
4753 8839 9.573133 GTCGGAGAAATGAATAAAAATGAATGT 57.427 29.630 0.00 0.00 39.69 2.71
4792 8878 6.865834 ATGTCTAGATACATCCATTCCTCC 57.134 41.667 0.00 0.00 35.08 4.30
4793 8879 4.767409 TGTCTAGATACATCCATTCCTCCG 59.233 45.833 0.00 0.00 0.00 4.63
4794 8880 5.010933 GTCTAGATACATCCATTCCTCCGA 58.989 45.833 0.00 0.00 0.00 4.55
4795 8881 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
4796 8882 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
4797 8883 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
4798 8884 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
4799 8885 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
4800 8886 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
4801 8887 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
4802 8888 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
4803 8889 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
4804 8890 5.174037 TCCATTCCTCCGACAAGTATTTT 57.826 39.130 0.00 0.00 0.00 1.82
4805 8891 5.566469 TCCATTCCTCCGACAAGTATTTTT 58.434 37.500 0.00 0.00 0.00 1.94
4806 8892 5.414454 TCCATTCCTCCGACAAGTATTTTTG 59.586 40.000 0.00 0.00 0.00 2.44
4807 8893 5.393027 CCATTCCTCCGACAAGTATTTTTGG 60.393 44.000 0.00 0.00 32.32 3.28
4808 8894 4.627284 TCCTCCGACAAGTATTTTTGGA 57.373 40.909 0.00 0.00 32.32 3.53
4809 8895 5.174037 TCCTCCGACAAGTATTTTTGGAT 57.826 39.130 0.00 0.00 32.32 3.41
4810 8896 4.941263 TCCTCCGACAAGTATTTTTGGATG 59.059 41.667 0.00 0.00 32.32 3.51
4811 8897 4.096382 CCTCCGACAAGTATTTTTGGATGG 59.904 45.833 0.00 0.00 32.32 3.51
4812 8898 4.912586 TCCGACAAGTATTTTTGGATGGA 58.087 39.130 0.00 0.00 32.32 3.41
4813 8899 4.941263 TCCGACAAGTATTTTTGGATGGAG 59.059 41.667 0.00 0.00 32.32 3.86
4814 8900 4.096382 CCGACAAGTATTTTTGGATGGAGG 59.904 45.833 0.00 0.00 32.32 4.30
4815 8901 4.096382 CGACAAGTATTTTTGGATGGAGGG 59.904 45.833 0.00 0.00 32.32 4.30
4816 8902 5.261216 GACAAGTATTTTTGGATGGAGGGA 58.739 41.667 0.00 0.00 32.32 4.20
4817 8903 5.264395 ACAAGTATTTTTGGATGGAGGGAG 58.736 41.667 0.00 0.00 32.32 4.30
4818 8904 5.222337 ACAAGTATTTTTGGATGGAGGGAGT 60.222 40.000 0.00 0.00 32.32 3.85
4842 8928 2.019249 TGATAGCTTGCCTCATTGCAC 58.981 47.619 0.00 0.00 41.88 4.57
4883 8971 5.877564 ACCTGAGCTTTCTAGATTGCTAAAC 59.122 40.000 16.68 8.20 35.76 2.01
4902 8990 5.832568 AAACGTTTTCTGAACAAACCAAC 57.167 34.783 7.96 0.00 31.46 3.77
4917 9006 7.169158 ACAAACCAACTTTTCAGATTGAAGA 57.831 32.000 0.00 0.00 37.70 2.87
4984 9073 0.686441 ACCTAGCCATGCAGGACGTA 60.686 55.000 0.00 0.00 41.22 3.57
5014 9106 0.098376 GTAACTGCTCCGACGACGAT 59.902 55.000 9.28 0.00 42.66 3.73
5083 9175 2.447379 ATCCTCGGGGCAGCTGAT 60.447 61.111 20.43 0.00 0.00 2.90
5165 9257 4.314440 ACATGGCTGTCACGCGGT 62.314 61.111 12.47 0.00 0.00 5.68
5195 9287 4.008933 GACGCTGCCACCCAGACT 62.009 66.667 0.00 0.00 44.64 3.24
5196 9288 2.603473 ACGCTGCCACCCAGACTA 60.603 61.111 0.00 0.00 44.64 2.59
5233 9325 9.220767 GATGTAACTTTCCATCTTTGTAACTCT 57.779 33.333 0.00 0.00 35.63 3.24
5271 9365 7.423844 TTCGGCTATGTGATATGATATTCCT 57.576 36.000 0.00 0.00 0.00 3.36
5290 9384 1.478916 CTTCCGTGGTTGGGTTTTGTT 59.521 47.619 0.00 0.00 0.00 2.83
5397 9493 1.000717 CCGAGCATTTTTCCCGTTGTT 60.001 47.619 0.00 0.00 0.00 2.83
5404 9500 2.847959 TTTTCCCGTTGTTCGTTTCC 57.152 45.000 0.00 0.00 37.94 3.13
5425 9521 0.984230 AATCCGACACTCCCACATGT 59.016 50.000 0.00 0.00 0.00 3.21
5502 9600 2.281761 CGAGCCTTGCCAAGTGGT 60.282 61.111 3.37 0.63 37.57 4.16
5558 9656 0.804989 GGGTCATTTGGAGCTCGTTG 59.195 55.000 7.83 2.70 43.58 4.10
5628 9726 0.835971 GCCCAACACCCCTCCAAAAT 60.836 55.000 0.00 0.00 0.00 1.82
5723 9821 3.054802 CCTCATTTGGACACTCCTAGCTT 60.055 47.826 0.00 0.00 37.46 3.74
5836 9936 3.300765 GACACGTCCGGGTCACCT 61.301 66.667 16.62 0.00 46.97 4.00
5839 9939 4.962836 ACGTCCGGGTCACCTCGT 62.963 66.667 0.00 0.00 33.76 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.353431 ACCTCAATATACAAACATGCATGATAA 57.647 29.630 32.75 13.10 0.00 1.75
38 39 8.785946 CACCTCAATATACAAACATGCATGATA 58.214 33.333 32.75 18.76 0.00 2.15
39 40 7.255695 CCACCTCAATATACAAACATGCATGAT 60.256 37.037 32.75 19.24 0.00 2.45
40 41 6.039605 CCACCTCAATATACAAACATGCATGA 59.960 38.462 32.75 10.72 0.00 3.07
41 42 6.210796 CCACCTCAATATACAAACATGCATG 58.789 40.000 25.09 25.09 0.00 4.06
42 43 5.302568 CCCACCTCAATATACAAACATGCAT 59.697 40.000 0.00 0.00 0.00 3.96
43 44 4.644234 CCCACCTCAATATACAAACATGCA 59.356 41.667 0.00 0.00 0.00 3.96
49 50 9.707957 ATGAAATAACCCACCTCAATATACAAA 57.292 29.630 0.00 0.00 0.00 2.83
53 54 9.461312 GCATATGAAATAACCCACCTCAATATA 57.539 33.333 6.97 0.00 29.06 0.86
54 55 7.949565 TGCATATGAAATAACCCACCTCAATAT 59.050 33.333 6.97 0.00 29.06 1.28
55 56 7.293828 TGCATATGAAATAACCCACCTCAATA 58.706 34.615 6.97 0.00 29.06 1.90
56 57 6.135454 TGCATATGAAATAACCCACCTCAAT 58.865 36.000 6.97 0.00 29.06 2.57
57 58 5.514169 TGCATATGAAATAACCCACCTCAA 58.486 37.500 6.97 0.00 29.06 3.02
58 59 5.122707 TGCATATGAAATAACCCACCTCA 57.877 39.130 6.97 0.00 29.06 3.86
59 60 6.449698 CAATGCATATGAAATAACCCACCTC 58.550 40.000 6.97 0.00 29.06 3.85
60 61 5.221501 GCAATGCATATGAAATAACCCACCT 60.222 40.000 6.97 0.00 29.06 4.00
61 62 4.990426 GCAATGCATATGAAATAACCCACC 59.010 41.667 6.97 0.00 29.06 4.61
63 64 5.866159 TGCAATGCATATGAAATAACCCA 57.134 34.783 2.72 0.00 31.71 4.51
80 81 2.453521 AGGCTCACATCAACATGCAAT 58.546 42.857 0.00 0.00 32.57 3.56
81 82 1.913778 AGGCTCACATCAACATGCAA 58.086 45.000 0.00 0.00 32.57 4.08
82 83 1.913778 AAGGCTCACATCAACATGCA 58.086 45.000 0.00 0.00 32.57 3.96
83 84 3.308438 AAAAGGCTCACATCAACATGC 57.692 42.857 0.00 0.00 32.57 4.06
84 85 4.873817 TGAAAAAGGCTCACATCAACATG 58.126 39.130 0.00 0.00 35.92 3.21
85 86 5.475719 CATGAAAAAGGCTCACATCAACAT 58.524 37.500 0.00 0.00 0.00 2.71
86 87 4.796946 GCATGAAAAAGGCTCACATCAACA 60.797 41.667 0.00 0.00 31.20 3.33
88 89 3.321396 TGCATGAAAAAGGCTCACATCAA 59.679 39.130 0.00 0.00 36.25 2.57
89 90 2.892215 TGCATGAAAAAGGCTCACATCA 59.108 40.909 0.00 0.00 36.25 3.07
90 91 3.581024 TGCATGAAAAAGGCTCACATC 57.419 42.857 0.00 0.00 36.25 3.06
91 92 3.259876 ACATGCATGAAAAAGGCTCACAT 59.740 39.130 32.75 2.07 36.25 3.21
92 93 2.629137 ACATGCATGAAAAAGGCTCACA 59.371 40.909 32.75 0.00 36.25 3.58
93 94 3.308438 ACATGCATGAAAAAGGCTCAC 57.692 42.857 32.75 0.00 36.25 3.51
94 95 3.655486 CAACATGCATGAAAAAGGCTCA 58.345 40.909 32.75 0.00 36.25 4.26
96 97 2.419667 GCAACATGCATGAAAAAGGCT 58.580 42.857 32.75 4.93 44.26 4.58
97 98 2.886587 GCAACATGCATGAAAAAGGC 57.113 45.000 32.75 19.84 44.26 4.35
120 121 9.366216 GCAAATATGACATATCATCATGCAAAT 57.634 29.630 8.41 0.00 42.15 2.32
121 122 8.361139 TGCAAATATGACATATCATCATGCAAA 58.639 29.630 14.99 0.00 45.50 3.68
122 123 7.887381 TGCAAATATGACATATCATCATGCAA 58.113 30.769 14.99 4.00 45.50 4.08
123 124 7.362574 CCTGCAAATATGACATATCATCATGCA 60.363 37.037 15.92 15.92 45.86 3.96
124 125 6.972901 CCTGCAAATATGACATATCATCATGC 59.027 38.462 8.41 13.12 42.15 4.06
125 126 8.051901 ACCTGCAAATATGACATATCATCATG 57.948 34.615 8.41 6.50 42.15 3.07
126 127 8.520351 CAACCTGCAAATATGACATATCATCAT 58.480 33.333 8.41 4.74 42.15 2.45
127 128 7.720515 TCAACCTGCAAATATGACATATCATCA 59.279 33.333 8.41 6.02 42.15 3.07
128 129 8.102800 TCAACCTGCAAATATGACATATCATC 57.897 34.615 8.41 2.09 42.15 2.92
144 145 8.997323 CCACAAAATTATTTTTATCAACCTGCA 58.003 29.630 0.00 0.00 33.29 4.41
145 146 8.450180 CCCACAAAATTATTTTTATCAACCTGC 58.550 33.333 0.00 0.00 33.29 4.85
146 147 8.945057 CCCCACAAAATTATTTTTATCAACCTG 58.055 33.333 0.00 0.00 33.29 4.00
147 148 7.609918 GCCCCACAAAATTATTTTTATCAACCT 59.390 33.333 0.00 0.00 33.29 3.50
148 149 7.609918 AGCCCCACAAAATTATTTTTATCAACC 59.390 33.333 0.00 0.00 33.29 3.77
149 150 8.560355 AGCCCCACAAAATTATTTTTATCAAC 57.440 30.769 0.00 0.00 33.29 3.18
163 164 9.930158 ATATCTAAATAGTTAAGCCCCACAAAA 57.070 29.630 0.00 0.00 0.00 2.44
217 218 9.607988 TGATCCAAACGCTCTTATATTTCTTTA 57.392 29.630 0.00 0.00 0.00 1.85
221 222 6.260050 TGGTGATCCAAACGCTCTTATATTTC 59.740 38.462 0.00 0.00 41.25 2.17
222 223 6.038271 GTGGTGATCCAAACGCTCTTATATTT 59.962 38.462 0.00 0.00 46.15 1.40
223 224 5.527582 GTGGTGATCCAAACGCTCTTATATT 59.472 40.000 0.00 0.00 46.15 1.28
225 226 4.161565 AGTGGTGATCCAAACGCTCTTATA 59.838 41.667 0.00 0.00 46.15 0.98
226 227 3.055094 AGTGGTGATCCAAACGCTCTTAT 60.055 43.478 0.00 0.00 46.15 1.73
227 228 2.301870 AGTGGTGATCCAAACGCTCTTA 59.698 45.455 0.00 0.00 46.15 2.10
228 229 1.072331 AGTGGTGATCCAAACGCTCTT 59.928 47.619 0.00 0.00 46.15 2.85
229 230 0.687354 AGTGGTGATCCAAACGCTCT 59.313 50.000 0.00 0.00 46.15 4.09
231 232 0.321653 GGAGTGGTGATCCAAACGCT 60.322 55.000 0.00 0.00 46.15 5.07
232 233 0.321653 AGGAGTGGTGATCCAAACGC 60.322 55.000 0.00 0.00 46.15 4.84
233 234 2.185004 AAGGAGTGGTGATCCAAACG 57.815 50.000 0.00 0.00 46.15 3.60
234 235 7.775561 AGAAATATAAGGAGTGGTGATCCAAAC 59.224 37.037 0.00 0.00 46.15 2.93
235 236 7.872138 AGAAATATAAGGAGTGGTGATCCAAA 58.128 34.615 0.00 0.00 46.15 3.28
237 238 7.451731 AAGAAATATAAGGAGTGGTGATCCA 57.548 36.000 0.00 0.00 39.47 3.41
238 239 9.274206 GTAAAGAAATATAAGGAGTGGTGATCC 57.726 37.037 0.00 0.00 37.07 3.36
239 240 9.832445 TGTAAAGAAATATAAGGAGTGGTGATC 57.168 33.333 0.00 0.00 0.00 2.92
240 241 9.838339 CTGTAAAGAAATATAAGGAGTGGTGAT 57.162 33.333 0.00 0.00 0.00 3.06
241 242 9.042450 TCTGTAAAGAAATATAAGGAGTGGTGA 57.958 33.333 0.00 0.00 0.00 4.02
242 243 9.319143 CTCTGTAAAGAAATATAAGGAGTGGTG 57.681 37.037 0.00 0.00 0.00 4.17
243 244 8.487028 CCTCTGTAAAGAAATATAAGGAGTGGT 58.513 37.037 0.00 0.00 0.00 4.16
244 245 7.934120 CCCTCTGTAAAGAAATATAAGGAGTGG 59.066 40.741 0.00 0.00 0.00 4.00
245 246 8.705594 TCCCTCTGTAAAGAAATATAAGGAGTG 58.294 37.037 0.00 0.00 0.00 3.51
246 247 8.855804 TCCCTCTGTAAAGAAATATAAGGAGT 57.144 34.615 0.00 0.00 0.00 3.85
247 248 8.929487 ACTCCCTCTGTAAAGAAATATAAGGAG 58.071 37.037 0.00 0.00 40.36 3.69
258 259 9.931698 TTGACTAATATACTCCCTCTGTAAAGA 57.068 33.333 0.00 0.00 0.00 2.52
263 264 9.838339 CATTTTTGACTAATATACTCCCTCTGT 57.162 33.333 0.00 0.00 0.00 3.41
308 309 1.285078 ACTGGGGCATCCTAAAACTCC 59.715 52.381 0.00 0.00 36.20 3.85
309 310 2.808906 ACTGGGGCATCCTAAAACTC 57.191 50.000 0.00 0.00 36.20 3.01
314 315 3.534357 TTCAAAACTGGGGCATCCTAA 57.466 42.857 0.00 0.00 36.20 2.69
317 318 3.701205 AATTTCAAAACTGGGGCATCC 57.299 42.857 0.00 0.00 0.00 3.51
319 320 5.559148 TGTAAATTTCAAAACTGGGGCAT 57.441 34.783 0.00 0.00 0.00 4.40
339 340 6.760770 TCGAAATTCAAAAGGCTCATTTTTGT 59.239 30.769 8.73 0.00 42.94 2.83
341 342 6.202762 GGTCGAAATTCAAAAGGCTCATTTTT 59.797 34.615 0.00 0.00 30.01 1.94
363 364 5.764131 TGTGTGTATTTTTCGGATTTGGTC 58.236 37.500 0.00 0.00 0.00 4.02
412 435 6.903883 ATTTTAGCTCGTGTCGAAATGTAT 57.096 33.333 0.00 0.00 34.74 2.29
418 441 5.518847 CAGGATTATTTTAGCTCGTGTCGAA 59.481 40.000 0.00 0.00 34.74 3.71
420 443 5.041287 TCAGGATTATTTTAGCTCGTGTCG 58.959 41.667 0.00 0.00 0.00 4.35
423 446 8.397906 TCATTTTCAGGATTATTTTAGCTCGTG 58.602 33.333 0.00 0.00 0.00 4.35
425 448 9.956720 AATCATTTTCAGGATTATTTTAGCTCG 57.043 29.630 0.00 0.00 32.23 5.03
492 515 2.418628 ACGTTAAGATTTGGGATGCACG 59.581 45.455 0.00 0.00 0.00 5.34
495 518 6.791303 TGAAATACGTTAAGATTTGGGATGC 58.209 36.000 0.00 0.00 0.00 3.91
500 526 7.471721 TCATGCTGAAATACGTTAAGATTTGG 58.528 34.615 0.00 0.00 0.00 3.28
531 557 3.808726 GGGATGTTTGTTACACGTGTGTA 59.191 43.478 30.83 15.81 44.42 2.90
544 570 3.949754 AGACATGTGCATAGGGATGTTTG 59.050 43.478 1.15 0.00 35.30 2.93
611 639 3.825014 CCATGGAGCCTGGATTTTGATAG 59.175 47.826 5.56 0.00 35.70 2.08
613 641 2.674420 CCATGGAGCCTGGATTTTGAT 58.326 47.619 5.56 0.00 35.70 2.57
654 682 4.909696 TTTCATTCTTTTTGAGCGGTGA 57.090 36.364 0.00 0.00 0.00 4.02
655 683 4.445385 CCTTTTCATTCTTTTTGAGCGGTG 59.555 41.667 0.00 0.00 0.00 4.94
656 684 4.099419 ACCTTTTCATTCTTTTTGAGCGGT 59.901 37.500 0.00 0.00 0.00 5.68
657 685 4.445385 CACCTTTTCATTCTTTTTGAGCGG 59.555 41.667 0.00 0.00 0.00 5.52
660 688 7.491682 TCCTTCACCTTTTCATTCTTTTTGAG 58.508 34.615 0.00 0.00 0.00 3.02
661 689 7.416964 TCCTTCACCTTTTCATTCTTTTTGA 57.583 32.000 0.00 0.00 0.00 2.69
662 690 8.491331 TTTCCTTCACCTTTTCATTCTTTTTG 57.509 30.769 0.00 0.00 0.00 2.44
663 691 7.770433 CCTTTCCTTCACCTTTTCATTCTTTTT 59.230 33.333 0.00 0.00 0.00 1.94
664 692 7.125659 TCCTTTCCTTCACCTTTTCATTCTTTT 59.874 33.333 0.00 0.00 0.00 2.27
680 708 3.008049 TCTTGCCTACACTCCTTTCCTTC 59.992 47.826 0.00 0.00 0.00 3.46
683 711 2.567615 TCTCTTGCCTACACTCCTTTCC 59.432 50.000 0.00 0.00 0.00 3.13
1213 3880 2.511452 CGAGGGCCTCCAATCGGAT 61.511 63.158 27.36 0.00 41.79 4.18
1262 3962 1.289800 GGCGGTTTCGTCCTCAAGTC 61.290 60.000 0.00 0.00 38.89 3.01
1265 3965 1.301401 CTGGCGGTTTCGTCCTCAA 60.301 57.895 0.00 0.00 40.82 3.02
1282 3986 3.058639 GCATCTGAAACGAAACAGAAGCT 60.059 43.478 20.28 0.00 46.88 3.74
1359 4262 6.165700 ACCAAGAACAAGCAATTCAAGAAT 57.834 33.333 0.00 0.00 0.00 2.40
1433 4493 2.862541 TGTCACCTTCCCATGTCAAAG 58.137 47.619 0.00 0.00 0.00 2.77
1458 4518 8.532923 TGCTCATCAATTAGCACAGTAGTTCTG 61.533 40.741 0.00 0.00 43.56 3.02
1459 4519 5.814705 GCTCATCAATTAGCACAGTAGTTCT 59.185 40.000 0.00 0.00 38.63 3.01
1460 4520 5.582269 TGCTCATCAATTAGCACAGTAGTTC 59.418 40.000 0.00 0.00 43.56 3.01
1461 4521 5.491070 TGCTCATCAATTAGCACAGTAGTT 58.509 37.500 0.00 0.00 43.56 2.24
1462 4522 5.089970 TGCTCATCAATTAGCACAGTAGT 57.910 39.130 0.00 0.00 43.56 2.73
1499 4559 5.276669 ATCCGGGGGAAGTTTGGATACAC 62.277 52.174 0.00 0.00 40.89 2.90
1501 4561 0.913924 TCCGGGGGAAGTTTGGATAC 59.086 55.000 0.00 0.00 0.00 2.24
1502 4562 1.772453 GATCCGGGGGAAGTTTGGATA 59.228 52.381 0.00 0.00 39.47 2.59
1511 4571 0.546747 AGTGAGTTGATCCGGGGGAA 60.547 55.000 0.00 0.00 34.34 3.97
1525 4589 1.929836 GTCTAATCCAAGCGCAGTGAG 59.070 52.381 11.47 0.62 0.00 3.51
1533 4597 6.428159 TGAGAGTTTTTCTGTCTAATCCAAGC 59.572 38.462 0.00 0.00 37.36 4.01
1560 4629 1.971695 CGGCCCTGTCCAAAAGGAC 60.972 63.158 7.69 7.69 36.91 3.85
1576 4668 3.157932 TCCTTTTGTTGCAAAGAACGG 57.842 42.857 0.00 6.48 0.00 4.44
1616 4708 5.371115 TTGAAAAGGAATGACATCCGAAC 57.629 39.130 0.00 0.00 44.60 3.95
1635 4738 4.821260 TCTGCAACAAGAACAATAGCTTGA 59.179 37.500 9.31 0.00 43.11 3.02
1671 4775 5.824904 AAGACAATTTCGGGATCTTGATG 57.175 39.130 0.00 0.00 0.00 3.07
1702 4835 3.625764 TGATAATGACCCGTAAGCAAAGC 59.374 43.478 0.00 0.00 0.00 3.51
1850 5018 4.615513 AGATACAGAGCTACAGTTCCCTT 58.384 43.478 0.00 0.00 0.00 3.95
1851 5019 4.258457 AGATACAGAGCTACAGTTCCCT 57.742 45.455 0.00 0.00 0.00 4.20
1887 5076 0.898789 GGAGAACCCGACACCAGAGA 60.899 60.000 0.00 0.00 0.00 3.10
1962 5617 2.025226 AGTGAGAACCCGATACCAGAGA 60.025 50.000 0.00 0.00 0.00 3.10
2046 5705 4.949856 ACTTTGCAGGTTATCGAAATGGAT 59.050 37.500 0.00 0.00 0.00 3.41
2060 5719 0.389426 ACGGCGTAGTACTTTGCAGG 60.389 55.000 12.58 12.80 0.00 4.85
2274 5936 4.024387 TGCGTCTGGAATTTCTGTGTTAAC 60.024 41.667 0.00 0.00 0.00 2.01
2329 5994 5.940192 AATAAGAATTGTTGTCTGCGTCA 57.060 34.783 0.00 0.00 0.00 4.35
2525 6197 3.473923 AGACGACTACTACTAGGAGCC 57.526 52.381 0.36 0.00 0.00 4.70
2546 6218 4.072131 GCCTGTTCTGTTGTGGAGATAAA 58.928 43.478 0.00 0.00 0.00 1.40
2592 6264 8.243426 GGAATCATTTGACTATAACAAAGCACA 58.757 33.333 0.00 0.00 39.90 4.57
2604 6276 7.466746 CCTTTTCAAGGGAATCATTTGACTA 57.533 36.000 0.00 0.00 45.27 2.59
2641 6313 6.596703 CATAATGCATGTACTGTGCTCATAC 58.403 40.000 19.60 0.00 42.92 2.39
2695 6369 3.011119 CCCAATGGTTGCAATGAAATGG 58.989 45.455 0.59 8.22 0.00 3.16
2878 6598 5.606348 ATGGCTGAGACTCTTAAGTTAGG 57.394 43.478 3.68 0.00 35.28 2.69
3282 7096 0.531974 ACGGTTGCGAGCTTCTTTGA 60.532 50.000 0.90 0.00 0.00 2.69
3299 7125 2.614057 GCCTCCATTGGTATGAGAAACG 59.386 50.000 1.86 0.00 33.37 3.60
3362 7206 4.607239 ACTCGGTTCTAGGAGGTAAATCA 58.393 43.478 0.00 0.00 34.58 2.57
3440 7287 5.692115 TTAATCTGTCCAGGCTGTCAATA 57.308 39.130 14.43 4.33 0.00 1.90
3616 7465 6.865205 GCTTAGTCAATTCTTCAAAGTGCAAT 59.135 34.615 0.00 0.00 0.00 3.56
3656 7549 9.447279 TTTCCTCATTAGTCCCATCTATTAGAA 57.553 33.333 0.00 0.00 0.00 2.10
3678 7571 7.839680 AATGGTATTATGGAAGGATGTTTCC 57.160 36.000 0.00 0.00 45.59 3.13
3915 7808 2.210116 GACGAAGACAGCTGAAAACCA 58.790 47.619 23.35 0.00 0.00 3.67
3973 7866 6.413783 TCATCCACTACAGAAACAGTGTTA 57.586 37.500 9.37 0.00 40.47 2.41
4003 7896 1.480789 TAGATGCACGCTGGTTCCTA 58.519 50.000 0.00 0.00 0.00 2.94
4155 8048 2.393271 ATCACTGCTTCTACTGCCAC 57.607 50.000 0.00 0.00 0.00 5.01
4210 8115 4.401519 TGGAGATTAACCGACTCTACCTTG 59.598 45.833 0.00 0.00 0.00 3.61
4222 8127 6.605471 AAGGAACCAAATTGGAGATTAACC 57.395 37.500 20.25 10.08 40.96 2.85
4328 8236 3.761752 GAGGAGAGATATCTACCACCTGC 59.238 52.174 22.41 13.67 0.00 4.85
4333 8241 5.015515 CAGCATGAGGAGAGATATCTACCA 58.984 45.833 22.41 10.90 39.69 3.25
4343 8251 1.066358 TGAACTGCAGCATGAGGAGAG 60.066 52.381 15.27 0.00 39.69 3.20
4435 8365 5.355350 ACATCAGCCAGCTACTAACAAAATC 59.645 40.000 0.00 0.00 0.00 2.17
4449 8488 6.698008 TTGGAAATGTATAACATCAGCCAG 57.302 37.500 0.00 0.00 37.97 4.85
4451 8490 7.516198 AGATTGGAAATGTATAACATCAGCC 57.484 36.000 0.00 0.00 37.97 4.85
4468 8507 5.421056 AGGACATAGTGTTCGTTAGATTGGA 59.579 40.000 0.00 0.00 29.06 3.53
4483 8522 4.655649 TCCATATGCTGTCAAGGACATAGT 59.344 41.667 0.00 0.00 41.94 2.12
4486 8525 3.181447 CCTCCATATGCTGTCAAGGACAT 60.181 47.826 0.00 0.00 41.94 3.06
4492 8531 6.840527 TGAATAATCCTCCATATGCTGTCAA 58.159 36.000 0.00 0.00 0.00 3.18
4493 8532 6.043590 ACTGAATAATCCTCCATATGCTGTCA 59.956 38.462 0.00 0.00 0.00 3.58
4494 8533 6.471146 ACTGAATAATCCTCCATATGCTGTC 58.529 40.000 0.00 0.00 0.00 3.51
4495 8534 6.271857 AGACTGAATAATCCTCCATATGCTGT 59.728 38.462 0.00 0.00 0.00 4.40
4570 8614 7.927629 GCATCTCTTTCTTCATCAGTTAGATCT 59.072 37.037 0.00 0.00 33.72 2.75
4597 8641 1.747709 ACATAGTCGCTACCTCGTGT 58.252 50.000 0.00 0.00 0.00 4.49
4633 8683 8.388656 TCCTACTATAGAAACAAATCCCACTT 57.611 34.615 6.78 0.00 0.00 3.16
4652 8708 3.375299 GCAATCAAATGTTCGCTCCTACT 59.625 43.478 0.00 0.00 0.00 2.57
4701 8787 0.038744 TTTCGGACGGAGGGAGTAGT 59.961 55.000 0.00 0.00 0.00 2.73
4703 8789 1.856629 AATTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
4704 8790 1.479730 GTAATTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
4705 8791 1.755380 AGTAATTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4706 8792 1.753073 GAGTAATTTCGGACGGAGGGA 59.247 52.381 0.00 0.00 0.00 4.20
4707 8793 1.535437 CGAGTAATTTCGGACGGAGGG 60.535 57.143 0.00 0.00 36.95 4.30
4708 8794 1.133790 ACGAGTAATTTCGGACGGAGG 59.866 52.381 4.68 0.00 44.57 4.30
4709 8795 2.448219 GACGAGTAATTTCGGACGGAG 58.552 52.381 4.68 0.00 44.57 4.63
4710 8796 1.202065 CGACGAGTAATTTCGGACGGA 60.202 52.381 4.68 0.00 44.57 4.69
4711 8797 1.186030 CGACGAGTAATTTCGGACGG 58.814 55.000 4.68 0.00 44.57 4.79
4716 8802 4.796830 TCATTTCTCCGACGAGTAATTTCG 59.203 41.667 0.00 0.00 45.70 3.46
4717 8803 6.642683 TTCATTTCTCCGACGAGTAATTTC 57.357 37.500 0.00 0.00 34.81 2.17
4718 8804 8.712285 TTATTCATTTCTCCGACGAGTAATTT 57.288 30.769 0.00 0.00 34.81 1.82
4719 8805 8.712285 TTTATTCATTTCTCCGACGAGTAATT 57.288 30.769 0.00 0.00 34.81 1.40
4720 8806 8.712285 TTTTATTCATTTCTCCGACGAGTAAT 57.288 30.769 0.00 0.00 36.77 1.89
4721 8807 8.537049 TTTTTATTCATTTCTCCGACGAGTAA 57.463 30.769 0.00 0.00 37.40 2.24
4722 8808 8.600625 CATTTTTATTCATTTCTCCGACGAGTA 58.399 33.333 0.00 0.00 37.40 2.59
4723 8809 7.333423 TCATTTTTATTCATTTCTCCGACGAGT 59.667 33.333 0.00 0.00 37.40 4.18
4724 8810 7.684670 TCATTTTTATTCATTTCTCCGACGAG 58.315 34.615 0.00 0.00 37.48 4.18
4725 8811 7.603963 TCATTTTTATTCATTTCTCCGACGA 57.396 32.000 0.00 0.00 0.00 4.20
4726 8812 8.736742 CATTCATTTTTATTCATTTCTCCGACG 58.263 33.333 0.00 0.00 0.00 5.12
4727 8813 9.573133 ACATTCATTTTTATTCATTTCTCCGAC 57.427 29.630 0.00 0.00 0.00 4.79
4766 8852 8.986991 GGAGGAATGGATGTATCTAGACATATT 58.013 37.037 0.00 0.00 40.18 1.28
4767 8853 7.286546 CGGAGGAATGGATGTATCTAGACATAT 59.713 40.741 0.00 0.00 40.18 1.78
4768 8854 6.603599 CGGAGGAATGGATGTATCTAGACATA 59.396 42.308 0.00 0.00 40.18 2.29
4769 8855 5.420421 CGGAGGAATGGATGTATCTAGACAT 59.580 44.000 0.00 0.00 42.82 3.06
4770 8856 4.767409 CGGAGGAATGGATGTATCTAGACA 59.233 45.833 0.00 0.00 0.00 3.41
4771 8857 5.010933 TCGGAGGAATGGATGTATCTAGAC 58.989 45.833 0.00 0.00 0.00 2.59
4772 8858 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
4773 8859 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
4774 8860 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
4775 8861 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
4776 8862 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
4777 8863 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
4778 8864 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
4779 8865 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
4780 8866 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
4781 8867 5.373812 AAATACTTGTCGGAGGAATGGAT 57.626 39.130 0.00 0.00 0.00 3.41
4782 8868 4.837093 AAATACTTGTCGGAGGAATGGA 57.163 40.909 0.00 0.00 0.00 3.41
4783 8869 5.393027 CCAAAAATACTTGTCGGAGGAATGG 60.393 44.000 0.00 0.00 0.00 3.16
4784 8870 5.414454 TCCAAAAATACTTGTCGGAGGAATG 59.586 40.000 0.00 0.00 0.00 2.67
4785 8871 5.566469 TCCAAAAATACTTGTCGGAGGAAT 58.434 37.500 0.00 0.00 0.00 3.01
4786 8872 4.975631 TCCAAAAATACTTGTCGGAGGAA 58.024 39.130 0.00 0.00 0.00 3.36
4787 8873 4.627284 TCCAAAAATACTTGTCGGAGGA 57.373 40.909 0.00 0.00 0.00 3.71
4788 8874 4.096382 CCATCCAAAAATACTTGTCGGAGG 59.904 45.833 0.00 0.00 0.00 4.30
4789 8875 4.941263 TCCATCCAAAAATACTTGTCGGAG 59.059 41.667 0.00 0.00 0.00 4.63
4790 8876 4.912586 TCCATCCAAAAATACTTGTCGGA 58.087 39.130 0.00 0.00 0.00 4.55
4791 8877 4.096382 CCTCCATCCAAAAATACTTGTCGG 59.904 45.833 0.00 0.00 0.00 4.79
4792 8878 4.096382 CCCTCCATCCAAAAATACTTGTCG 59.904 45.833 0.00 0.00 0.00 4.35
4793 8879 5.261216 TCCCTCCATCCAAAAATACTTGTC 58.739 41.667 0.00 0.00 0.00 3.18
4794 8880 5.222337 ACTCCCTCCATCCAAAAATACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
4795 8881 5.264395 ACTCCCTCCATCCAAAAATACTTG 58.736 41.667 0.00 0.00 0.00 3.16
4796 8882 5.536497 ACTCCCTCCATCCAAAAATACTT 57.464 39.130 0.00 0.00 0.00 2.24
4797 8883 5.731678 ACTACTCCCTCCATCCAAAAATACT 59.268 40.000 0.00 0.00 0.00 2.12
4798 8884 6.002653 ACTACTCCCTCCATCCAAAAATAC 57.997 41.667 0.00 0.00 0.00 1.89
4799 8885 6.216662 TCAACTACTCCCTCCATCCAAAAATA 59.783 38.462 0.00 0.00 0.00 1.40
4800 8886 5.015178 TCAACTACTCCCTCCATCCAAAAAT 59.985 40.000 0.00 0.00 0.00 1.82
4801 8887 4.352595 TCAACTACTCCCTCCATCCAAAAA 59.647 41.667 0.00 0.00 0.00 1.94
4802 8888 3.913799 TCAACTACTCCCTCCATCCAAAA 59.086 43.478 0.00 0.00 0.00 2.44
4803 8889 3.526899 TCAACTACTCCCTCCATCCAAA 58.473 45.455 0.00 0.00 0.00 3.28
4804 8890 3.199442 TCAACTACTCCCTCCATCCAA 57.801 47.619 0.00 0.00 0.00 3.53
4805 8891 2.940514 TCAACTACTCCCTCCATCCA 57.059 50.000 0.00 0.00 0.00 3.41
4806 8892 3.259625 GCTATCAACTACTCCCTCCATCC 59.740 52.174 0.00 0.00 0.00 3.51
4807 8893 4.156477 AGCTATCAACTACTCCCTCCATC 58.844 47.826 0.00 0.00 0.00 3.51
4808 8894 4.206244 AGCTATCAACTACTCCCTCCAT 57.794 45.455 0.00 0.00 0.00 3.41
4809 8895 3.689872 AGCTATCAACTACTCCCTCCA 57.310 47.619 0.00 0.00 0.00 3.86
4810 8896 3.493524 GCAAGCTATCAACTACTCCCTCC 60.494 52.174 0.00 0.00 0.00 4.30
4811 8897 3.493524 GGCAAGCTATCAACTACTCCCTC 60.494 52.174 0.00 0.00 0.00 4.30
4812 8898 2.436173 GGCAAGCTATCAACTACTCCCT 59.564 50.000 0.00 0.00 0.00 4.20
4813 8899 2.436173 AGGCAAGCTATCAACTACTCCC 59.564 50.000 0.00 0.00 0.00 4.30
4814 8900 3.133003 TGAGGCAAGCTATCAACTACTCC 59.867 47.826 0.00 0.00 0.00 3.85
4815 8901 4.392921 TGAGGCAAGCTATCAACTACTC 57.607 45.455 0.00 0.00 0.00 2.59
4816 8902 5.121811 CAATGAGGCAAGCTATCAACTACT 58.878 41.667 0.00 0.00 0.00 2.57
4817 8903 4.260948 GCAATGAGGCAAGCTATCAACTAC 60.261 45.833 0.00 0.00 0.00 2.73
4818 8904 3.879295 GCAATGAGGCAAGCTATCAACTA 59.121 43.478 0.00 0.00 0.00 2.24
4860 8946 5.006165 CGTTTAGCAATCTAGAAAGCTCAGG 59.994 44.000 21.31 13.18 38.47 3.86
4883 8971 6.144724 TGAAAAGTTGGTTTGTTCAGAAAACG 59.855 34.615 0.00 0.00 38.21 3.60
4902 8990 3.373439 CGAGCCCTCTTCAATCTGAAAAG 59.627 47.826 0.00 0.00 35.73 2.27
4984 9073 2.354805 GGAGCAGTTACCGTTCTCCATT 60.355 50.000 0.00 0.00 42.10 3.16
5014 9106 4.704833 GACCCCGCAGCTTGCTCA 62.705 66.667 6.58 0.00 42.25 4.26
5061 9153 4.247380 CTGCCCCGAGGATGCTCC 62.247 72.222 8.84 0.00 36.58 4.70
5074 9166 0.952280 CATCATCACCATCAGCTGCC 59.048 55.000 9.47 0.00 0.00 4.85
5083 9175 1.377072 CACCACGGCATCATCACCA 60.377 57.895 0.00 0.00 0.00 4.17
5195 9287 5.396660 GGAAAGTTACATCCGGGGTGTTATA 60.397 44.000 19.71 0.00 0.00 0.98
5196 9288 4.520179 GAAAGTTACATCCGGGGTGTTAT 58.480 43.478 19.71 1.94 0.00 1.89
5271 9365 1.558233 AACAAAACCCAACCACGGAA 58.442 45.000 0.00 0.00 0.00 4.30
5296 9390 8.095937 TGCATGACATGAATAAAATGCAAAAA 57.904 26.923 19.76 0.00 45.25 1.94
5349 9445 3.556365 TGAGACGAACACGTATGCAAAAA 59.444 39.130 0.00 0.00 40.41 1.94
5350 9446 3.124560 TGAGACGAACACGTATGCAAAA 58.875 40.909 0.00 0.00 40.41 2.44
5397 9493 0.682852 AGTGTCGGATTGGGAAACGA 59.317 50.000 0.00 0.00 0.00 3.85
5404 9500 0.253044 ATGTGGGAGTGTCGGATTGG 59.747 55.000 0.00 0.00 0.00 3.16
5558 9656 2.609427 GGATAACCGTTGGAGTACCC 57.391 55.000 0.00 0.00 34.81 3.69
5628 9726 4.349930 GGAGTTAGATGGGTTATTGGGCTA 59.650 45.833 0.00 0.00 0.00 3.93
5723 9821 7.683399 AGGGGTCTATATATAGAGGTAGAGGA 58.317 42.308 20.55 0.00 39.87 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.