Multiple sequence alignment - TraesCS3B01G387800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G387800 chr3B 100.000 5594 0 0 1 5594 610502319 610496726 0.000000e+00 10331.0
1 TraesCS3B01G387800 chr3B 92.647 136 9 1 2449 2583 798492080 798492215 1.590000e-45 195.0
2 TraesCS3B01G387800 chr3B 97.647 85 2 0 5454 5538 10622511 10622595 4.520000e-31 147.0
3 TraesCS3B01G387800 chr3B 89.623 106 10 1 5452 5556 753744247 753744142 3.520000e-27 134.0
4 TraesCS3B01G387800 chr3B 95.714 70 2 1 4857 4926 610497396 610497328 1.650000e-20 111.0
5 TraesCS3B01G387800 chr3A 93.828 2900 111 35 2573 5457 602688243 602685397 0.000000e+00 4301.0
6 TraesCS3B01G387800 chr3A 89.960 2251 133 33 263 2459 602690453 602688242 0.000000e+00 2819.0
7 TraesCS3B01G387800 chr3A 90.385 52 5 0 5543 5594 602685394 602685343 1.010000e-07 69.4
8 TraesCS3B01G387800 chr3D 95.109 2147 71 15 3286 5429 460420100 460417985 0.000000e+00 3352.0
9 TraesCS3B01G387800 chr3D 91.193 2112 118 32 383 2459 460422891 460420813 0.000000e+00 2808.0
10 TraesCS3B01G387800 chr3D 96.388 609 18 2 2573 3181 460420814 460420210 0.000000e+00 1000.0
11 TraesCS3B01G387800 chr3D 88.889 63 7 0 5532 5594 460417851 460417789 1.670000e-10 78.7
12 TraesCS3B01G387800 chrUn 100.000 398 0 0 4154 4551 478989335 478989732 0.000000e+00 736.0
13 TraesCS3B01G387800 chr5B 97.600 125 2 1 2458 2582 402870296 402870173 4.390000e-51 213.0
14 TraesCS3B01G387800 chr5B 94.505 91 5 0 5448 5538 17545609 17545699 2.100000e-29 141.0
15 TraesCS3B01G387800 chr4A 96.124 129 3 2 2450 2577 744273208 744273081 5.680000e-50 209.0
16 TraesCS3B01G387800 chr7B 97.500 120 3 0 2458 2577 252178172 252178053 7.350000e-49 206.0
17 TraesCS3B01G387800 chr7B 97.500 120 3 0 2458 2577 462842233 462842114 7.350000e-49 206.0
18 TraesCS3B01G387800 chr7B 95.556 90 4 0 5454 5543 525957319 525957230 1.620000e-30 145.0
19 TraesCS3B01G387800 chr7B 91.346 104 8 1 3159 3261 634299385 634299282 2.100000e-29 141.0
20 TraesCS3B01G387800 chr7B 93.684 95 5 1 5454 5548 701408267 701408174 2.100000e-29 141.0
21 TraesCS3B01G387800 chr7B 95.294 85 4 0 3173 3257 694802482 694802566 9.780000e-28 135.0
22 TraesCS3B01G387800 chr7A 97.521 121 2 1 2458 2578 653631155 653631274 7.350000e-49 206.0
23 TraesCS3B01G387800 chr7A 94.792 96 5 0 5449 5544 682442554 682442459 3.490000e-32 150.0
24 TraesCS3B01G387800 chr5D 97.521 121 2 1 2458 2577 473359767 473359887 7.350000e-49 206.0
25 TraesCS3B01G387800 chr4B 97.521 121 2 1 2455 2574 141456044 141455924 7.350000e-49 206.0
26 TraesCS3B01G387800 chr1D 97.500 120 3 0 2458 2577 284915830 284915949 7.350000e-49 206.0
27 TraesCS3B01G387800 chr1A 94.681 94 5 0 3164 3257 584082907 584082814 4.520000e-31 147.0
28 TraesCS3B01G387800 chr1A 86.957 115 13 2 3146 3260 592121328 592121216 1.640000e-25 128.0
29 TraesCS3B01G387800 chr6B 95.556 90 4 0 5454 5543 269666927 269667016 1.620000e-30 145.0
30 TraesCS3B01G387800 chr2B 95.556 90 4 0 5453 5542 166044481 166044570 1.620000e-30 145.0
31 TraesCS3B01G387800 chr2B 89.815 108 11 0 3158 3265 554296139 554296032 7.560000e-29 139.0
32 TraesCS3B01G387800 chr4D 91.837 98 8 0 3162 3259 270678538 270678635 2.720000e-28 137.0
33 TraesCS3B01G387800 chr6D 89.189 111 8 4 3148 3257 68082968 68082861 9.780000e-28 135.0
34 TraesCS3B01G387800 chr6D 88.991 109 10 1 3166 3272 36675387 36675495 3.520000e-27 134.0
35 TraesCS3B01G387800 chr6A 89.091 110 10 2 3173 3280 609730977 609731086 9.780000e-28 135.0
36 TraesCS3B01G387800 chr5A 89.720 107 7 3 5432 5538 524672171 524672273 3.520000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G387800 chr3B 610496726 610502319 5593 True 10331.000000 10331 100.00000 1 5594 1 chr3B.!!$R1 5593
1 TraesCS3B01G387800 chr3A 602685343 602690453 5110 True 2396.466667 4301 91.39100 263 5594 3 chr3A.!!$R1 5331
2 TraesCS3B01G387800 chr3D 460417789 460422891 5102 True 1809.675000 3352 92.89475 383 5594 4 chr3D.!!$R1 5211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.037734 GGCGGAAAGAAGAAAGGGGA 59.962 55.0 0.00 0.00 0.00 4.81 F
349 350 0.178944 TTCTCCTCGTCCACCTTCCA 60.179 55.0 0.00 0.00 0.00 3.53 F
1531 1594 0.108945 CGAAGAACAGGTCGGGGTAC 60.109 60.0 0.00 0.00 33.62 3.34 F
2477 2557 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.00 44.66 1.40 F
2570 2650 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
2571 2651 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.0 13.64 0.00 46.06 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1111 1168 0.803117 CGAAGCCTCACGACACTAGA 59.197 55.00 0.00 0.00 0.00 2.43 R
2185 2261 1.330234 ATGTGTTTGCAGCCATCACA 58.670 45.00 11.66 11.66 39.03 3.58 R
2457 2537 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.00 13.64 0.00 46.06 2.59 R
3933 4049 0.103937 CTGTCTTCCGGAGCTCATCC 59.896 60.00 17.19 0.00 45.64 3.51 R
4152 4268 4.050553 CAACAATCGCAACTCCATTGTTT 58.949 39.13 6.54 0.00 44.59 2.83 R
4598 4714 0.877743 GCTGAGTTCAAAGACCCTGC 59.122 55.00 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.299190 CCTCGCCCGGATCTCCTC 61.299 72.222 0.73 0.00 0.00 3.71
42 43 3.299190 CTCGCCCGGATCTCCTCC 61.299 72.222 0.73 0.00 41.07 4.30
43 44 4.137615 TCGCCCGGATCTCCTCCA 62.138 66.667 0.73 0.00 45.24 3.86
44 45 3.610669 CGCCCGGATCTCCTCCAG 61.611 72.222 0.73 0.00 45.24 3.86
45 46 3.934962 GCCCGGATCTCCTCCAGC 61.935 72.222 0.73 0.00 45.24 4.85
46 47 2.444706 CCCGGATCTCCTCCAGCA 60.445 66.667 0.73 0.00 45.24 4.41
47 48 2.066393 CCCGGATCTCCTCCAGCAA 61.066 63.158 0.73 0.00 45.24 3.91
48 49 1.144936 CCGGATCTCCTCCAGCAAC 59.855 63.158 0.00 0.00 45.24 4.17
49 50 1.333636 CCGGATCTCCTCCAGCAACT 61.334 60.000 0.00 0.00 45.24 3.16
50 51 0.179089 CGGATCTCCTCCAGCAACTG 60.179 60.000 0.00 0.00 45.24 3.16
51 52 0.463474 GGATCTCCTCCAGCAACTGC 60.463 60.000 0.00 0.00 44.26 4.40
52 53 0.251354 GATCTCCTCCAGCAACTGCA 59.749 55.000 4.22 0.00 45.16 4.41
53 54 0.252479 ATCTCCTCCAGCAACTGCAG 59.748 55.000 13.48 13.48 45.16 4.41
54 55 0.833409 TCTCCTCCAGCAACTGCAGA 60.833 55.000 23.35 0.00 45.16 4.26
55 56 0.673022 CTCCTCCAGCAACTGCAGAC 60.673 60.000 23.35 9.43 45.16 3.51
56 57 2.031516 CCTCCAGCAACTGCAGACG 61.032 63.158 23.35 11.82 45.16 4.18
57 58 2.031012 TCCAGCAACTGCAGACGG 59.969 61.111 23.35 12.50 45.16 4.79
58 59 3.730761 CCAGCAACTGCAGACGGC 61.731 66.667 23.35 19.52 45.16 5.68
78 79 2.878743 CTCCGAAGTGAGCATAGCG 58.121 57.895 0.00 0.00 0.00 4.26
79 80 0.101399 CTCCGAAGTGAGCATAGCGT 59.899 55.000 0.00 0.00 0.00 5.07
80 81 1.333931 CTCCGAAGTGAGCATAGCGTA 59.666 52.381 0.00 0.00 0.00 4.42
81 82 1.333931 TCCGAAGTGAGCATAGCGTAG 59.666 52.381 0.00 0.00 0.00 3.51
82 83 1.600663 CCGAAGTGAGCATAGCGTAGG 60.601 57.143 0.00 0.00 0.00 3.18
83 84 1.065701 CGAAGTGAGCATAGCGTAGGT 59.934 52.381 0.00 0.00 44.89 3.08
85 86 3.607310 CGAAGTGAGCATAGCGTAGGTAG 60.607 52.174 0.00 0.00 46.38 3.18
86 87 2.933573 AGTGAGCATAGCGTAGGTAGT 58.066 47.619 0.00 0.00 46.38 2.73
87 88 2.619177 AGTGAGCATAGCGTAGGTAGTG 59.381 50.000 0.00 0.00 46.38 2.74
88 89 2.617308 GTGAGCATAGCGTAGGTAGTGA 59.383 50.000 0.00 0.00 46.38 3.41
89 90 3.253677 GTGAGCATAGCGTAGGTAGTGAT 59.746 47.826 0.00 0.00 46.38 3.06
90 91 3.889538 TGAGCATAGCGTAGGTAGTGATT 59.110 43.478 0.00 0.00 46.38 2.57
91 92 4.023107 TGAGCATAGCGTAGGTAGTGATTC 60.023 45.833 0.00 0.00 46.38 2.52
92 93 3.058155 AGCATAGCGTAGGTAGTGATTCG 60.058 47.826 0.00 0.00 46.38 3.34
93 94 3.822996 CATAGCGTAGGTAGTGATTCGG 58.177 50.000 0.00 0.00 46.38 4.30
94 95 0.384669 AGCGTAGGTAGTGATTCGGC 59.615 55.000 0.00 0.00 35.08 5.54
95 96 0.933509 GCGTAGGTAGTGATTCGGCG 60.934 60.000 0.00 0.00 0.00 6.46
96 97 0.933509 CGTAGGTAGTGATTCGGCGC 60.934 60.000 0.00 0.00 0.00 6.53
97 98 0.101759 GTAGGTAGTGATTCGGCGCA 59.898 55.000 10.83 0.00 0.00 6.09
98 99 1.037493 TAGGTAGTGATTCGGCGCAT 58.963 50.000 10.83 0.00 0.00 4.73
99 100 0.249489 AGGTAGTGATTCGGCGCATC 60.249 55.000 12.62 12.62 0.00 3.91
100 101 1.548973 GGTAGTGATTCGGCGCATCG 61.549 60.000 14.41 4.34 0.00 3.84
101 102 1.299850 TAGTGATTCGGCGCATCGG 60.300 57.895 14.41 0.00 0.00 4.18
126 127 3.876198 CGGCGGGCGGATTCAAAG 61.876 66.667 16.95 0.00 0.00 2.77
127 128 2.750237 GGCGGGCGGATTCAAAGT 60.750 61.111 0.00 0.00 0.00 2.66
128 129 2.485122 GCGGGCGGATTCAAAGTG 59.515 61.111 0.00 0.00 0.00 3.16
129 130 3.051392 GCGGGCGGATTCAAAGTGG 62.051 63.158 0.00 0.00 0.00 4.00
130 131 2.885113 GGGCGGATTCAAAGTGGC 59.115 61.111 0.00 0.00 0.00 5.01
131 132 2.485122 GGCGGATTCAAAGTGGCG 59.515 61.111 0.00 0.00 0.00 5.69
132 133 2.485122 GCGGATTCAAAGTGGCGG 59.515 61.111 0.00 0.00 0.00 6.13
133 134 2.485122 CGGATTCAAAGTGGCGGC 59.515 61.111 0.00 0.00 0.00 6.53
134 135 2.485122 GGATTCAAAGTGGCGGCG 59.515 61.111 0.51 0.51 0.00 6.46
135 136 2.485122 GATTCAAAGTGGCGGCGG 59.515 61.111 9.78 0.00 0.00 6.13
136 137 3.683587 GATTCAAAGTGGCGGCGGC 62.684 63.158 27.76 27.76 38.90 6.53
147 148 2.740826 CGGCGGCGGAAAGAAGAA 60.741 61.111 25.36 0.00 0.00 2.52
148 149 2.322081 CGGCGGCGGAAAGAAGAAA 61.322 57.895 25.36 0.00 0.00 2.52
149 150 1.502190 GGCGGCGGAAAGAAGAAAG 59.498 57.895 9.78 0.00 0.00 2.62
150 151 1.502190 GCGGCGGAAAGAAGAAAGG 59.498 57.895 9.78 0.00 0.00 3.11
151 152 1.923227 GCGGCGGAAAGAAGAAAGGG 61.923 60.000 9.78 0.00 0.00 3.95
152 153 1.305930 CGGCGGAAAGAAGAAAGGGG 61.306 60.000 0.00 0.00 0.00 4.79
153 154 0.037734 GGCGGAAAGAAGAAAGGGGA 59.962 55.000 0.00 0.00 0.00 4.81
154 155 1.546998 GGCGGAAAGAAGAAAGGGGAA 60.547 52.381 0.00 0.00 0.00 3.97
155 156 2.235891 GCGGAAAGAAGAAAGGGGAAA 58.764 47.619 0.00 0.00 0.00 3.13
156 157 2.826128 GCGGAAAGAAGAAAGGGGAAAT 59.174 45.455 0.00 0.00 0.00 2.17
157 158 4.014406 GCGGAAAGAAGAAAGGGGAAATA 58.986 43.478 0.00 0.00 0.00 1.40
158 159 4.096532 GCGGAAAGAAGAAAGGGGAAATAG 59.903 45.833 0.00 0.00 0.00 1.73
159 160 4.640647 CGGAAAGAAGAAAGGGGAAATAGG 59.359 45.833 0.00 0.00 0.00 2.57
160 161 5.580998 GGAAAGAAGAAAGGGGAAATAGGT 58.419 41.667 0.00 0.00 0.00 3.08
161 162 5.419155 GGAAAGAAGAAAGGGGAAATAGGTG 59.581 44.000 0.00 0.00 0.00 4.00
162 163 4.592997 AGAAGAAAGGGGAAATAGGTGG 57.407 45.455 0.00 0.00 0.00 4.61
163 164 4.183916 AGAAGAAAGGGGAAATAGGTGGA 58.816 43.478 0.00 0.00 0.00 4.02
164 165 4.796265 AGAAGAAAGGGGAAATAGGTGGAT 59.204 41.667 0.00 0.00 0.00 3.41
165 166 5.976870 AGAAGAAAGGGGAAATAGGTGGATA 59.023 40.000 0.00 0.00 0.00 2.59
166 167 5.913946 AGAAAGGGGAAATAGGTGGATAG 57.086 43.478 0.00 0.00 0.00 2.08
167 168 4.665483 AGAAAGGGGAAATAGGTGGATAGG 59.335 45.833 0.00 0.00 0.00 2.57
168 169 3.005529 AGGGGAAATAGGTGGATAGGG 57.994 52.381 0.00 0.00 0.00 3.53
169 170 2.255649 AGGGGAAATAGGTGGATAGGGT 59.744 50.000 0.00 0.00 0.00 4.34
170 171 3.061369 GGGGAAATAGGTGGATAGGGTT 58.939 50.000 0.00 0.00 0.00 4.11
171 172 3.465966 GGGGAAATAGGTGGATAGGGTTT 59.534 47.826 0.00 0.00 0.00 3.27
172 173 4.078805 GGGGAAATAGGTGGATAGGGTTTT 60.079 45.833 0.00 0.00 0.00 2.43
173 174 4.893524 GGGAAATAGGTGGATAGGGTTTTG 59.106 45.833 0.00 0.00 0.00 2.44
174 175 4.893524 GGAAATAGGTGGATAGGGTTTTGG 59.106 45.833 0.00 0.00 0.00 3.28
175 176 3.595190 ATAGGTGGATAGGGTTTTGGC 57.405 47.619 0.00 0.00 0.00 4.52
176 177 1.382914 AGGTGGATAGGGTTTTGGCT 58.617 50.000 0.00 0.00 0.00 4.75
177 178 1.716503 AGGTGGATAGGGTTTTGGCTT 59.283 47.619 0.00 0.00 0.00 4.35
178 179 2.100197 GGTGGATAGGGTTTTGGCTTC 58.900 52.381 0.00 0.00 0.00 3.86
179 180 2.100197 GTGGATAGGGTTTTGGCTTCC 58.900 52.381 0.00 0.00 0.00 3.46
180 181 1.340600 TGGATAGGGTTTTGGCTTCCG 60.341 52.381 0.00 0.00 0.00 4.30
181 182 1.064979 GGATAGGGTTTTGGCTTCCGA 60.065 52.381 0.00 0.00 0.00 4.55
182 183 2.014857 GATAGGGTTTTGGCTTCCGAC 58.985 52.381 0.00 0.00 0.00 4.79
183 184 0.320946 TAGGGTTTTGGCTTCCGACG 60.321 55.000 0.00 0.00 0.00 5.12
184 185 1.895231 GGGTTTTGGCTTCCGACGT 60.895 57.895 0.00 0.00 0.00 4.34
185 186 1.572941 GGTTTTGGCTTCCGACGTC 59.427 57.895 5.18 5.18 0.00 4.34
186 187 0.883370 GGTTTTGGCTTCCGACGTCT 60.883 55.000 14.70 0.00 0.00 4.18
187 188 0.234884 GTTTTGGCTTCCGACGTCTG 59.765 55.000 14.70 7.40 0.00 3.51
188 189 0.882927 TTTTGGCTTCCGACGTCTGG 60.883 55.000 14.70 16.06 0.00 3.86
189 190 3.876589 TTGGCTTCCGACGTCTGGC 62.877 63.158 14.70 13.01 0.00 4.85
190 191 4.070552 GGCTTCCGACGTCTGGCT 62.071 66.667 14.70 0.00 0.00 4.75
191 192 2.048127 GCTTCCGACGTCTGGCTT 60.048 61.111 14.70 0.00 0.00 4.35
192 193 1.214589 GCTTCCGACGTCTGGCTTA 59.785 57.895 14.70 5.13 0.00 3.09
193 194 0.389426 GCTTCCGACGTCTGGCTTAA 60.389 55.000 14.70 6.46 0.00 1.85
194 195 1.938016 GCTTCCGACGTCTGGCTTAAA 60.938 52.381 14.70 6.15 0.00 1.52
195 196 2.618053 CTTCCGACGTCTGGCTTAAAT 58.382 47.619 14.70 0.00 0.00 1.40
196 197 3.777478 CTTCCGACGTCTGGCTTAAATA 58.223 45.455 14.70 0.00 0.00 1.40
197 198 3.431922 TCCGACGTCTGGCTTAAATAG 57.568 47.619 14.70 0.00 0.00 1.73
206 207 3.708013 GCTTAAATAGCCGCCTCCT 57.292 52.632 0.00 0.00 44.48 3.69
207 208 1.968704 GCTTAAATAGCCGCCTCCTT 58.031 50.000 0.00 0.00 44.48 3.36
208 209 1.874231 GCTTAAATAGCCGCCTCCTTC 59.126 52.381 0.00 0.00 44.48 3.46
209 210 2.495084 CTTAAATAGCCGCCTCCTTCC 58.505 52.381 0.00 0.00 0.00 3.46
210 211 1.802553 TAAATAGCCGCCTCCTTCCT 58.197 50.000 0.00 0.00 0.00 3.36
211 212 0.470341 AAATAGCCGCCTCCTTCCTC 59.530 55.000 0.00 0.00 0.00 3.71
212 213 1.749334 AATAGCCGCCTCCTTCCTCG 61.749 60.000 0.00 0.00 0.00 4.63
254 255 2.357034 GCAACGTGAAGCGGAGGA 60.357 61.111 0.00 0.00 46.52 3.71
255 256 2.383527 GCAACGTGAAGCGGAGGAG 61.384 63.158 0.00 0.00 46.52 3.69
256 257 1.738099 CAACGTGAAGCGGAGGAGG 60.738 63.158 0.00 0.00 46.52 4.30
257 258 3.591254 AACGTGAAGCGGAGGAGGC 62.591 63.158 0.00 0.00 46.52 4.70
258 259 4.069232 CGTGAAGCGGAGGAGGCA 62.069 66.667 0.00 0.00 36.85 4.75
259 260 2.435059 GTGAAGCGGAGGAGGCAC 60.435 66.667 0.00 0.00 0.00 5.01
260 261 3.706373 TGAAGCGGAGGAGGCACC 61.706 66.667 0.00 0.00 39.35 5.01
261 262 4.475135 GAAGCGGAGGAGGCACCC 62.475 72.222 0.00 0.00 40.05 4.61
265 266 3.775654 CGGAGGAGGCACCCTGTC 61.776 72.222 3.07 0.00 40.05 3.51
266 267 2.607750 GGAGGAGGCACCCTGTCA 60.608 66.667 3.07 0.00 40.05 3.58
267 268 2.665603 GAGGAGGCACCCTGTCAC 59.334 66.667 3.07 0.00 40.05 3.67
268 269 2.122413 AGGAGGCACCCTGTCACA 60.122 61.111 0.00 0.00 40.05 3.58
278 279 3.509575 GCACCCTGTCACATGGAAAATAA 59.490 43.478 6.05 0.00 0.00 1.40
305 306 2.755655 ACAGGACCTGACAGTCTATTCG 59.244 50.000 28.56 0.00 36.95 3.34
311 312 2.534298 CTGACAGTCTATTCGTGCTGG 58.466 52.381 1.31 0.00 33.62 4.85
315 316 0.537188 AGTCTATTCGTGCTGGTGGG 59.463 55.000 0.00 0.00 0.00 4.61
349 350 0.178944 TTCTCCTCGTCCACCTTCCA 60.179 55.000 0.00 0.00 0.00 3.53
355 356 2.700897 CCTCGTCCACCTTCCATATCTT 59.299 50.000 0.00 0.00 0.00 2.40
358 359 3.637229 TCGTCCACCTTCCATATCTTCTC 59.363 47.826 0.00 0.00 0.00 2.87
372 373 0.742281 CTTCTCCCATGTCACCAGCG 60.742 60.000 0.00 0.00 0.00 5.18
378 379 0.744057 CCATGTCACCAGCGCACATA 60.744 55.000 11.47 0.00 0.00 2.29
411 434 0.527565 ATCAAAAGTGTGCGCATCCC 59.472 50.000 15.91 4.35 0.00 3.85
475 498 1.630244 GCCACTAACAGAGCAGCACG 61.630 60.000 0.00 0.00 0.00 5.34
521 544 1.140852 CCACTAATCCTCGCCCATCAA 59.859 52.381 0.00 0.00 0.00 2.57
530 553 3.061848 GCCCATCAACCCACACCG 61.062 66.667 0.00 0.00 0.00 4.94
547 570 2.825532 CACCGTCCCCAATCAGAAATTT 59.174 45.455 0.00 0.00 0.00 1.82
549 572 3.245264 ACCGTCCCCAATCAGAAATTTCT 60.245 43.478 15.11 15.11 38.25 2.52
652 675 0.976641 TTCCTCTTGGACTCATGCGT 59.023 50.000 0.00 0.00 43.06 5.24
658 681 0.392706 TTGGACTCATGCGTGTGACT 59.607 50.000 14.62 0.00 0.00 3.41
853 896 2.579738 GTTGCCGTCTCCTCCTCC 59.420 66.667 0.00 0.00 0.00 4.30
857 900 2.123640 CCGTCTCCTCCTCCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
858 901 2.684104 CGTCTCCTCCTCCTCCCA 59.316 66.667 0.00 0.00 0.00 4.37
859 902 1.755008 CGTCTCCTCCTCCTCCCAC 60.755 68.421 0.00 0.00 0.00 4.61
860 903 1.388531 GTCTCCTCCTCCTCCCACA 59.611 63.158 0.00 0.00 0.00 4.17
865 908 3.208592 TCCTCCTCCCACACCCCT 61.209 66.667 0.00 0.00 0.00 4.79
879 922 2.652113 CCCCTCCCCTCCTTCCTCT 61.652 68.421 0.00 0.00 0.00 3.69
881 924 1.456705 CCTCCCCTCCTTCCTCTCG 60.457 68.421 0.00 0.00 0.00 4.04
1111 1168 0.611896 CAGGAGCGGAATTGGGGTTT 60.612 55.000 0.00 0.00 0.00 3.27
1116 1173 1.633945 AGCGGAATTGGGGTTTCTAGT 59.366 47.619 0.00 0.00 0.00 2.57
1118 1175 2.878526 GCGGAATTGGGGTTTCTAGTGT 60.879 50.000 0.00 0.00 0.00 3.55
1131 1188 0.179161 CTAGTGTCGTGAGGCTTCGG 60.179 60.000 11.74 0.00 36.07 4.30
1134 1191 3.112709 GTCGTGAGGCTTCGGTGC 61.113 66.667 11.74 0.00 0.00 5.01
1152 1209 4.436050 CGGTGCACTGTACTGATTTGATTC 60.436 45.833 17.96 0.00 0.00 2.52
1492 1555 4.828925 GAGCTGCTCCGGCACCTC 62.829 72.222 18.80 0.00 44.28 3.85
1531 1594 0.108945 CGAAGAACAGGTCGGGGTAC 60.109 60.000 0.00 0.00 33.62 3.34
1599 1662 0.473755 TCCTGACCTCTTTGCTGCAA 59.526 50.000 11.69 11.69 0.00 4.08
1619 1682 2.315925 ATTGCGTGTCCATCTGGTAG 57.684 50.000 0.00 0.00 36.34 3.18
1624 1687 2.418746 GCGTGTCCATCTGGTAGATTGT 60.419 50.000 0.00 0.00 31.32 2.71
1669 1732 1.539827 GTTTGCTGGGTTTGTAGCGAT 59.460 47.619 0.00 0.00 42.74 4.58
1703 1766 2.170607 ACTAGCGCTATGTTTGGTCCAT 59.829 45.455 19.19 0.00 0.00 3.41
1716 1779 7.333528 TGTTTGGTCCATTATCTAGAAATGC 57.666 36.000 16.14 8.30 33.80 3.56
1795 1860 3.302365 TCTTTTGCAATTACCTGCTGC 57.698 42.857 0.00 0.00 43.07 5.25
1811 1876 1.608801 GCTGCTTGGGGGAAAAACATG 60.609 52.381 0.00 0.00 0.00 3.21
1874 1939 4.705991 TGAGTCAGATATTTTGCATTGCCA 59.294 37.500 6.12 0.00 0.00 4.92
1876 1941 4.463539 AGTCAGATATTTTGCATTGCCACA 59.536 37.500 6.12 0.00 0.00 4.17
1877 1942 5.128171 AGTCAGATATTTTGCATTGCCACAT 59.872 36.000 6.12 0.00 0.00 3.21
1909 1974 6.992063 CTCAAGTGAGTAGGTTGCAATTAT 57.008 37.500 0.59 0.00 37.40 1.28
1916 1981 7.553044 AGTGAGTAGGTTGCAATTATTTAGGAC 59.447 37.037 0.59 0.00 0.00 3.85
1918 1983 7.885922 TGAGTAGGTTGCAATTATTTAGGACAA 59.114 33.333 0.59 0.00 0.00 3.18
1949 2020 2.128771 AATATGCGGCCACTTTGAGT 57.871 45.000 2.24 0.00 0.00 3.41
1955 2026 1.429463 CGGCCACTTTGAGTCTGTAC 58.571 55.000 2.24 0.00 0.00 2.90
1965 2036 5.104900 ACTTTGAGTCTGTACAGGTCTTTGT 60.105 40.000 22.48 14.42 35.09 2.83
2035 2109 6.236409 TCAAATCTGTTCTCTTGCTTCTGAT 58.764 36.000 0.00 0.00 0.00 2.90
2097 2171 3.052455 TCAAAGACTGCGCTAATTGGA 57.948 42.857 9.73 0.00 0.00 3.53
2171 2247 5.114764 TGATTGGTGCTTGATCTGGATAA 57.885 39.130 0.00 0.00 0.00 1.75
2185 2261 3.962063 TCTGGATAATTGGCATGCATTGT 59.038 39.130 21.36 9.82 0.00 2.71
2203 2279 0.385029 GTGTGATGGCTGCAAACACA 59.615 50.000 15.20 15.20 40.61 3.72
2242 2318 7.052565 CACATCAAATTTATGTGCCTTTGAC 57.947 36.000 18.95 0.00 45.43 3.18
2256 2332 3.728864 GCCTTTGACGTGTTCTGCATATG 60.729 47.826 0.00 0.00 0.00 1.78
2374 2454 6.790319 ACTGGGGTAATCAGTACTTCATTTT 58.210 36.000 0.00 0.00 42.91 1.82
2462 2542 8.630054 TGTATGTTTATATTGCCCATTACTCC 57.370 34.615 0.00 0.00 0.00 3.85
2463 2543 7.668052 TGTATGTTTATATTGCCCATTACTCCC 59.332 37.037 0.00 0.00 0.00 4.30
2464 2544 6.274322 TGTTTATATTGCCCATTACTCCCT 57.726 37.500 0.00 0.00 0.00 4.20
2465 2545 6.303839 TGTTTATATTGCCCATTACTCCCTC 58.696 40.000 0.00 0.00 0.00 4.30
2466 2546 5.514500 TTATATTGCCCATTACTCCCTCC 57.486 43.478 0.00 0.00 0.00 4.30
2467 2547 0.474184 ATTGCCCATTACTCCCTCCG 59.526 55.000 0.00 0.00 0.00 4.63
2468 2548 0.912487 TTGCCCATTACTCCCTCCGT 60.912 55.000 0.00 0.00 0.00 4.69
2469 2549 1.335132 TGCCCATTACTCCCTCCGTC 61.335 60.000 0.00 0.00 0.00 4.79
2470 2550 2.041206 GCCCATTACTCCCTCCGTCC 62.041 65.000 0.00 0.00 0.00 4.79
2471 2551 1.740285 CCATTACTCCCTCCGTCCG 59.260 63.158 0.00 0.00 0.00 4.79
2472 2552 1.740285 CATTACTCCCTCCGTCCGG 59.260 63.158 0.00 0.00 0.00 5.14
2473 2553 0.754217 CATTACTCCCTCCGTCCGGA 60.754 60.000 0.00 0.00 42.90 5.14
2474 2554 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2475 2555 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
2476 2556 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2477 2557 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2478 2558 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2479 2559 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2480 2560 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2481 2561 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2482 2562 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2483 2563 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2484 2564 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2485 2565 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2486 2566 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
2487 2567 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2488 2568 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
2489 2569 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
2490 2570 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
2491 2571 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
2492 2572 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
2493 2573 3.877508 GGAAATACTTGTCGGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
2494 2574 4.383770 GGAAATACTTGTCGGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
2495 2575 5.368989 GAAATACTTGTCGGAGGAATGGAT 58.631 41.667 0.00 0.00 0.00 3.41
2496 2576 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
2497 2577 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
2498 2578 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
2499 2579 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
2500 2580 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
2501 2581 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
2502 2582 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
2503 2583 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
2504 2584 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
2505 2585 5.010933 TCGGAGGAATGGATGTATCTAGAC 58.989 45.833 0.00 0.00 0.00 2.59
2506 2586 4.142578 CGGAGGAATGGATGTATCTAGACG 60.143 50.000 0.00 0.00 0.00 4.18
2507 2587 4.767928 GGAGGAATGGATGTATCTAGACGT 59.232 45.833 0.00 0.00 0.00 4.34
2508 2588 5.944599 GGAGGAATGGATGTATCTAGACGTA 59.055 44.000 0.00 0.00 0.00 3.57
2509 2589 6.603997 GGAGGAATGGATGTATCTAGACGTAT 59.396 42.308 0.00 0.00 0.00 3.06
2510 2590 7.122948 GGAGGAATGGATGTATCTAGACGTATT 59.877 40.741 0.00 0.00 0.00 1.89
2511 2591 8.423906 AGGAATGGATGTATCTAGACGTATTT 57.576 34.615 0.00 0.00 0.00 1.40
2512 2592 8.871125 AGGAATGGATGTATCTAGACGTATTTT 58.129 33.333 0.00 0.00 0.00 1.82
2544 2624 8.716674 AGATACATCCATTTTTATGCATTCCT 57.283 30.769 3.54 0.00 0.00 3.36
2545 2625 8.800332 AGATACATCCATTTTTATGCATTCCTC 58.200 33.333 3.54 0.00 0.00 3.71
2546 2626 6.165700 ACATCCATTTTTATGCATTCCTCC 57.834 37.500 3.54 0.00 0.00 4.30
2547 2627 4.916983 TCCATTTTTATGCATTCCTCCG 57.083 40.909 3.54 0.00 0.00 4.63
2548 2628 4.531854 TCCATTTTTATGCATTCCTCCGA 58.468 39.130 3.54 0.00 0.00 4.55
2549 2629 4.338118 TCCATTTTTATGCATTCCTCCGAC 59.662 41.667 3.54 0.00 0.00 4.79
2550 2630 4.097741 CCATTTTTATGCATTCCTCCGACA 59.902 41.667 3.54 0.00 0.00 4.35
2551 2631 5.394005 CCATTTTTATGCATTCCTCCGACAA 60.394 40.000 3.54 0.00 0.00 3.18
2552 2632 4.963276 TTTTATGCATTCCTCCGACAAG 57.037 40.909 3.54 0.00 0.00 3.16
2553 2633 3.627395 TTATGCATTCCTCCGACAAGT 57.373 42.857 3.54 0.00 0.00 3.16
2554 2634 4.746535 TTATGCATTCCTCCGACAAGTA 57.253 40.909 3.54 0.00 0.00 2.24
2555 2635 3.845781 ATGCATTCCTCCGACAAGTAT 57.154 42.857 0.00 0.00 0.00 2.12
2556 2636 3.627395 TGCATTCCTCCGACAAGTATT 57.373 42.857 0.00 0.00 0.00 1.89
2557 2637 3.950397 TGCATTCCTCCGACAAGTATTT 58.050 40.909 0.00 0.00 0.00 1.40
2558 2638 3.938963 TGCATTCCTCCGACAAGTATTTC 59.061 43.478 0.00 0.00 0.00 2.17
2559 2639 3.312697 GCATTCCTCCGACAAGTATTTCC 59.687 47.826 0.00 0.00 0.00 3.13
2560 2640 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
2561 2641 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
2562 2642 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
2563 2643 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
2564 2644 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
2565 2645 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2566 2646 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2567 2647 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2568 2648 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2569 2649 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2570 2650 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2571 2651 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2594 2674 8.957466 GGAGTAGTTATGTAGGAAGCAATTTTT 58.043 33.333 0.00 0.00 0.00 1.94
2951 3032 4.991056 TGTGATGTTCTTAGAGCACTTGTC 59.009 41.667 0.00 0.00 0.00 3.18
3029 3110 2.034053 TGTAGCAACAAGGAAAAAGCGG 59.966 45.455 0.00 0.00 30.91 5.52
3047 3128 4.833390 AGCGGGCAGAGGTATTTATATTC 58.167 43.478 0.00 0.00 0.00 1.75
3048 3129 3.617263 GCGGGCAGAGGTATTTATATTCG 59.383 47.826 0.00 0.00 0.00 3.34
3163 3244 8.918202 ACACCTTGTTTTACTAGAATGATCAA 57.082 30.769 0.00 0.00 0.00 2.57
3164 3245 9.349713 ACACCTTGTTTTACTAGAATGATCAAA 57.650 29.630 0.00 0.00 0.00 2.69
3181 3262 7.921041 TGATCAAATATCAACTACTCCCTCT 57.079 36.000 0.00 0.00 0.00 3.69
3183 3264 7.345653 TGATCAAATATCAACTACTCCCTCTGT 59.654 37.037 0.00 0.00 0.00 3.41
3184 3265 8.783660 ATCAAATATCAACTACTCCCTCTGTA 57.216 34.615 0.00 0.00 0.00 2.74
3185 3266 8.603898 TCAAATATCAACTACTCCCTCTGTAA 57.396 34.615 0.00 0.00 0.00 2.41
3186 3267 9.042450 TCAAATATCAACTACTCCCTCTGTAAA 57.958 33.333 0.00 0.00 0.00 2.01
3187 3268 9.099454 CAAATATCAACTACTCCCTCTGTAAAC 57.901 37.037 0.00 0.00 0.00 2.01
3188 3269 8.611051 AATATCAACTACTCCCTCTGTAAACT 57.389 34.615 0.00 0.00 0.00 2.66
3190 3271 9.710818 ATATCAACTACTCCCTCTGTAAACTAA 57.289 33.333 0.00 0.00 0.00 2.24
3199 3280 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3200 3281 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3201 3282 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3202 3283 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3203 3284 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3212 3293 9.900710 ACTAATATAAGAGCGTTTAGATCACTG 57.099 33.333 0.00 0.00 37.82 3.66
3215 3296 9.469807 AATATAAGAGCGTTTAGATCACTGAAG 57.530 33.333 0.00 0.00 37.82 3.02
3217 3298 5.899120 AGAGCGTTTAGATCACTGAAGTA 57.101 39.130 0.00 0.00 37.82 2.24
3218 3299 5.885881 AGAGCGTTTAGATCACTGAAGTAG 58.114 41.667 0.00 0.00 37.82 2.57
3219 3300 5.416326 AGAGCGTTTAGATCACTGAAGTAGT 59.584 40.000 0.00 0.00 41.36 2.73
3223 3304 7.916450 AGCGTTTAGATCACTGAAGTAGTAATC 59.084 37.037 0.00 0.00 37.60 1.75
3224 3305 7.916450 GCGTTTAGATCACTGAAGTAGTAATCT 59.084 37.037 0.00 0.00 44.81 2.40
3231 3312 9.303537 GATCACTGAAGTAGTAATCTAAACACC 57.696 37.037 0.00 0.00 37.60 4.16
3233 3314 7.453752 TCACTGAAGTAGTAATCTAAACACCCT 59.546 37.037 0.00 0.00 37.60 4.34
3234 3315 8.095169 CACTGAAGTAGTAATCTAAACACCCTT 58.905 37.037 0.00 0.00 37.60 3.95
3235 3316 9.317827 ACTGAAGTAGTAATCTAAACACCCTTA 57.682 33.333 0.00 0.00 38.04 2.69
3297 3411 6.428385 ACATTAGCATTCAGTAGAAGTTGC 57.572 37.500 0.00 0.00 39.11 4.17
3333 3448 6.018425 CGATGTACTTCATTTCATCTTCCAGG 60.018 42.308 9.22 0.00 36.83 4.45
3381 3496 9.117183 GTTATACTTACACCTTTTGATTAGGGG 57.883 37.037 0.00 0.00 42.17 4.79
3415 3530 7.873739 AGCAAATGCATTAGAAACAAGTTAC 57.126 32.000 13.39 0.00 45.16 2.50
3417 3532 8.143835 AGCAAATGCATTAGAAACAAGTTACTT 58.856 29.630 13.39 0.00 45.16 2.24
3421 3536 9.683069 AATGCATTAGAAACAAGTTACTTTCTG 57.317 29.630 11.02 0.00 37.32 3.02
3430 3545 7.897575 AACAAGTTACTTTCTGAGCTGATAG 57.102 36.000 0.00 0.00 0.00 2.08
3434 3549 7.049799 AGTTACTTTCTGAGCTGATAGGATC 57.950 40.000 0.00 0.00 0.00 3.36
3462 3577 8.898761 TGTCCAGTATGCGATGTAAATAATTTT 58.101 29.630 0.00 0.00 31.97 1.82
3487 3602 8.812513 TTTAGGCCGCTAATGTATCTAGTATA 57.187 34.615 0.00 0.00 0.00 1.47
3489 3604 7.098074 AGGCCGCTAATGTATCTAGTATAAC 57.902 40.000 0.00 0.00 0.00 1.89
3546 3661 1.462616 TGCTTTGCGCATCAGGTTAT 58.537 45.000 12.75 0.00 45.47 1.89
3548 3663 3.013219 TGCTTTGCGCATCAGGTTATAA 58.987 40.909 12.75 0.00 45.47 0.98
3583 3698 9.382275 ACCTTTTAATTGCATGGTGAAAATATC 57.618 29.630 0.00 0.00 0.00 1.63
3667 3783 7.477144 TCACTCGCCTATTACATGTTTTATG 57.523 36.000 2.30 0.00 0.00 1.90
3675 3791 8.836413 GCCTATTACATGTTTTATGCTTGACTA 58.164 33.333 2.30 0.00 0.00 2.59
3736 3852 6.501781 ACTTACCGTTCTTAATATGGACTCG 58.498 40.000 3.64 0.00 0.00 4.18
3740 3856 4.360563 CGTTCTTAATATGGACTCGCTGT 58.639 43.478 0.00 0.00 0.00 4.40
3741 3857 4.804139 CGTTCTTAATATGGACTCGCTGTT 59.196 41.667 0.00 0.00 0.00 3.16
3742 3858 5.291128 CGTTCTTAATATGGACTCGCTGTTT 59.709 40.000 0.00 0.00 0.00 2.83
4152 4268 3.392947 TCACTGTACCTGGTGGAAATGAA 59.607 43.478 10.23 0.00 37.04 2.57
4551 4667 3.753294 AGCTCCTGGGTTGATAATACG 57.247 47.619 0.00 0.00 0.00 3.06
4620 4736 1.349357 AGGGTCTTTGAACTCAGCCTC 59.651 52.381 0.00 0.00 30.72 4.70
4736 4852 4.699735 TGTACATGAAAATTCCAGATGCGT 59.300 37.500 0.00 0.00 0.00 5.24
4790 4906 6.071952 TCCTTCATTGTACAATTCCTTTCTGC 60.072 38.462 18.50 0.00 0.00 4.26
4900 5016 4.998788 AGTCAGTTGCACTTTTTCTTTCC 58.001 39.130 0.00 0.00 0.00 3.13
5042 5158 7.787028 TGGTATGTATGCATCTACTTGTAACA 58.213 34.615 0.19 0.00 36.58 2.41
5045 5161 6.603237 TGTATGCATCTACTTGTAACATGC 57.397 37.500 0.19 13.34 40.29 4.06
5073 5189 8.454570 TCAACTGCATACATACATTTCATGAT 57.545 30.769 0.00 0.00 0.00 2.45
5189 5305 8.836413 TCTGATAGTTTTTGTTCCTTTACACAG 58.164 33.333 0.00 0.00 0.00 3.66
5192 5308 5.875930 AGTTTTTGTTCCTTTACACAGTCG 58.124 37.500 0.00 0.00 0.00 4.18
5221 5337 6.761312 TCATGTTTTGAGGATGCTGATTTTT 58.239 32.000 0.00 0.00 0.00 1.94
5251 5367 7.040823 GGACTTCTTATGAGGATGCTTTATTGG 60.041 40.741 0.00 0.00 0.00 3.16
5252 5368 7.577303 ACTTCTTATGAGGATGCTTTATTGGA 58.423 34.615 0.00 0.00 0.00 3.53
5253 5369 8.055181 ACTTCTTATGAGGATGCTTTATTGGAA 58.945 33.333 0.00 0.00 0.00 3.53
5254 5370 7.807977 TCTTATGAGGATGCTTTATTGGAAC 57.192 36.000 0.00 0.00 0.00 3.62
5255 5371 7.345691 TCTTATGAGGATGCTTTATTGGAACA 58.654 34.615 0.00 0.00 0.00 3.18
5256 5372 5.841957 ATGAGGATGCTTTATTGGAACAC 57.158 39.130 0.00 0.00 39.29 3.32
5257 5373 4.661222 TGAGGATGCTTTATTGGAACACA 58.339 39.130 0.00 0.00 39.29 3.72
5258 5374 5.263599 TGAGGATGCTTTATTGGAACACAT 58.736 37.500 0.00 0.00 39.29 3.21
5259 5375 6.422333 TGAGGATGCTTTATTGGAACACATA 58.578 36.000 0.00 0.00 39.29 2.29
5260 5376 7.062322 TGAGGATGCTTTATTGGAACACATAT 58.938 34.615 0.00 0.00 39.29 1.78
5261 5377 7.560991 TGAGGATGCTTTATTGGAACACATATT 59.439 33.333 0.00 0.00 39.29 1.28
5262 5378 8.310122 AGGATGCTTTATTGGAACACATATTT 57.690 30.769 0.00 0.00 39.29 1.40
5263 5379 8.761689 AGGATGCTTTATTGGAACACATATTTT 58.238 29.630 0.00 0.00 39.29 1.82
5264 5380 9.382275 GGATGCTTTATTGGAACACATATTTTT 57.618 29.630 0.00 0.00 39.29 1.94
5336 5452 2.936919 TTCTCAATGTGACTGCAGGT 57.063 45.000 19.93 3.31 0.00 4.00
5343 5467 0.753867 TGTGACTGCAGGTTCCGTTA 59.246 50.000 19.93 0.00 0.00 3.18
5354 5478 4.512571 GCAGGTTCCGTTAGTTTTAGTTCA 59.487 41.667 0.00 0.00 0.00 3.18
5369 5493 9.143155 AGTTTTAGTTCATTTACAGAATTGGGT 57.857 29.630 0.00 0.00 0.00 4.51
5370 5494 9.191995 GTTTTAGTTCATTTACAGAATTGGGTG 57.808 33.333 0.00 0.00 0.00 4.61
5464 5588 8.203681 AGTACAAATTGTTTAGTACTCCCTCT 57.796 34.615 3.17 0.00 42.38 3.69
5467 5591 7.970102 ACAAATTGTTTAGTACTCCCTCTGTA 58.030 34.615 0.00 0.00 0.00 2.74
5468 5592 8.434392 ACAAATTGTTTAGTACTCCCTCTGTAA 58.566 33.333 0.00 0.00 0.00 2.41
5469 5593 9.280174 CAAATTGTTTAGTACTCCCTCTGTAAA 57.720 33.333 0.00 0.00 0.00 2.01
5470 5594 8.843885 AATTGTTTAGTACTCCCTCTGTAAAC 57.156 34.615 0.00 2.63 33.11 2.01
5482 5606 9.047947 ACTCCCTCTGTAAACAAATATAAGAGT 57.952 33.333 0.00 0.00 0.00 3.24
5483 5607 9.319143 CTCCCTCTGTAAACAAATATAAGAGTG 57.681 37.037 0.00 0.00 0.00 3.51
5484 5608 8.822805 TCCCTCTGTAAACAAATATAAGAGTGT 58.177 33.333 0.00 0.00 0.00 3.55
5485 5609 9.449719 CCCTCTGTAAACAAATATAAGAGTGTT 57.550 33.333 0.00 0.00 35.77 3.32
5538 5704 7.299246 TCTTATATTTCTTTACGGAGGGAGG 57.701 40.000 0.00 0.00 0.00 4.30
5541 5707 6.765355 ATATTTCTTTACGGAGGGAGGAAT 57.235 37.500 0.00 0.00 0.00 3.01
5553 5719 5.763698 CGGAGGGAGGAATAATTTAAACCTC 59.236 44.000 16.94 16.94 44.21 3.85
5562 5728 7.733047 AGGAATAATTTAAACCTCCCACAGTTT 59.267 33.333 0.00 0.00 39.44 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.749310 AGGCTCGCTTCGCTGTGG 62.749 66.667 0.00 0.00 0.00 4.17
5 6 3.184683 GAGGCTCGCTTCGCTGTG 61.185 66.667 0.00 0.00 0.00 3.66
6 7 4.785512 CGAGGCTCGCTTCGCTGT 62.786 66.667 25.31 0.00 38.59 4.40
24 25 3.299190 GAGGAGATCCGGGCGAGG 61.299 72.222 0.00 0.00 42.08 4.63
25 26 3.299190 GGAGGAGATCCGGGCGAG 61.299 72.222 0.00 0.00 38.67 5.03
32 33 3.126120 TGCAGTTGCTGGAGGAGATCC 62.126 57.143 5.62 0.00 43.24 3.36
33 34 0.251354 TGCAGTTGCTGGAGGAGATC 59.749 55.000 5.62 0.00 42.66 2.75
34 35 0.252479 CTGCAGTTGCTGGAGGAGAT 59.748 55.000 5.25 0.00 44.36 2.75
35 36 1.675801 CTGCAGTTGCTGGAGGAGA 59.324 57.895 5.25 0.00 44.36 3.71
36 37 4.298009 CTGCAGTTGCTGGAGGAG 57.702 61.111 5.25 0.00 44.36 3.69
40 41 2.031012 CCGTCTGCAGTTGCTGGA 59.969 61.111 14.67 4.22 42.66 3.86
41 42 3.730761 GCCGTCTGCAGTTGCTGG 61.731 66.667 14.67 10.40 42.66 4.85
42 43 4.081030 CGCCGTCTGCAGTTGCTG 62.081 66.667 14.67 5.19 42.66 4.41
45 46 3.782244 GAGCGCCGTCTGCAGTTG 61.782 66.667 14.67 7.29 41.33 3.16
60 61 0.101399 ACGCTATGCTCACTTCGGAG 59.899 55.000 0.00 0.00 37.97 4.63
61 62 1.333931 CTACGCTATGCTCACTTCGGA 59.666 52.381 0.00 0.00 0.00 4.55
62 63 1.600663 CCTACGCTATGCTCACTTCGG 60.601 57.143 0.00 0.00 0.00 4.30
63 64 1.065701 ACCTACGCTATGCTCACTTCG 59.934 52.381 0.00 0.00 0.00 3.79
64 65 2.873133 ACCTACGCTATGCTCACTTC 57.127 50.000 0.00 0.00 0.00 3.01
65 66 3.066900 CACTACCTACGCTATGCTCACTT 59.933 47.826 0.00 0.00 0.00 3.16
66 67 2.619177 CACTACCTACGCTATGCTCACT 59.381 50.000 0.00 0.00 0.00 3.41
67 68 2.617308 TCACTACCTACGCTATGCTCAC 59.383 50.000 0.00 0.00 0.00 3.51
68 69 2.927028 TCACTACCTACGCTATGCTCA 58.073 47.619 0.00 0.00 0.00 4.26
69 70 4.477780 GAATCACTACCTACGCTATGCTC 58.522 47.826 0.00 0.00 0.00 4.26
70 71 3.058155 CGAATCACTACCTACGCTATGCT 60.058 47.826 0.00 0.00 0.00 3.79
71 72 3.235195 CGAATCACTACCTACGCTATGC 58.765 50.000 0.00 0.00 0.00 3.14
72 73 3.822996 CCGAATCACTACCTACGCTATG 58.177 50.000 0.00 0.00 0.00 2.23
73 74 2.228343 GCCGAATCACTACCTACGCTAT 59.772 50.000 0.00 0.00 0.00 2.97
74 75 1.605710 GCCGAATCACTACCTACGCTA 59.394 52.381 0.00 0.00 0.00 4.26
75 76 0.384669 GCCGAATCACTACCTACGCT 59.615 55.000 0.00 0.00 0.00 5.07
76 77 0.933509 CGCCGAATCACTACCTACGC 60.934 60.000 0.00 0.00 0.00 4.42
77 78 0.933509 GCGCCGAATCACTACCTACG 60.934 60.000 0.00 0.00 0.00 3.51
78 79 0.101759 TGCGCCGAATCACTACCTAC 59.898 55.000 4.18 0.00 0.00 3.18
79 80 1.000607 GATGCGCCGAATCACTACCTA 60.001 52.381 4.18 0.00 0.00 3.08
80 81 0.249489 GATGCGCCGAATCACTACCT 60.249 55.000 4.18 0.00 0.00 3.08
81 82 1.548973 CGATGCGCCGAATCACTACC 61.549 60.000 4.18 0.00 0.00 3.18
82 83 1.548973 CCGATGCGCCGAATCACTAC 61.549 60.000 4.18 0.00 0.00 2.73
83 84 1.299850 CCGATGCGCCGAATCACTA 60.300 57.895 4.18 0.00 0.00 2.74
84 85 2.586079 CCGATGCGCCGAATCACT 60.586 61.111 4.18 0.00 0.00 3.41
85 86 4.299316 GCCGATGCGCCGAATCAC 62.299 66.667 4.18 0.00 0.00 3.06
109 110 3.876198 CTTTGAATCCGCCCGCCG 61.876 66.667 0.00 0.00 0.00 6.46
110 111 2.750237 ACTTTGAATCCGCCCGCC 60.750 61.111 0.00 0.00 0.00 6.13
111 112 2.485122 CACTTTGAATCCGCCCGC 59.515 61.111 0.00 0.00 0.00 6.13
112 113 3.051392 GCCACTTTGAATCCGCCCG 62.051 63.158 0.00 0.00 0.00 6.13
113 114 2.885113 GCCACTTTGAATCCGCCC 59.115 61.111 0.00 0.00 0.00 6.13
114 115 2.485122 CGCCACTTTGAATCCGCC 59.515 61.111 0.00 0.00 0.00 6.13
115 116 2.485122 CCGCCACTTTGAATCCGC 59.515 61.111 0.00 0.00 0.00 5.54
116 117 2.485122 GCCGCCACTTTGAATCCG 59.515 61.111 0.00 0.00 0.00 4.18
117 118 2.485122 CGCCGCCACTTTGAATCC 59.515 61.111 0.00 0.00 0.00 3.01
118 119 2.485122 CCGCCGCCACTTTGAATC 59.515 61.111 0.00 0.00 0.00 2.52
119 120 3.747976 GCCGCCGCCACTTTGAAT 61.748 61.111 0.00 0.00 0.00 2.57
130 131 2.240612 CTTTCTTCTTTCCGCCGCCG 62.241 60.000 0.00 0.00 0.00 6.46
131 132 1.502190 CTTTCTTCTTTCCGCCGCC 59.498 57.895 0.00 0.00 0.00 6.13
132 133 1.502190 CCTTTCTTCTTTCCGCCGC 59.498 57.895 0.00 0.00 0.00 6.53
133 134 1.305930 CCCCTTTCTTCTTTCCGCCG 61.306 60.000 0.00 0.00 0.00 6.46
134 135 0.037734 TCCCCTTTCTTCTTTCCGCC 59.962 55.000 0.00 0.00 0.00 6.13
135 136 1.905637 TTCCCCTTTCTTCTTTCCGC 58.094 50.000 0.00 0.00 0.00 5.54
136 137 4.640647 CCTATTTCCCCTTTCTTCTTTCCG 59.359 45.833 0.00 0.00 0.00 4.30
137 138 5.419155 CACCTATTTCCCCTTTCTTCTTTCC 59.581 44.000 0.00 0.00 0.00 3.13
138 139 5.419155 CCACCTATTTCCCCTTTCTTCTTTC 59.581 44.000 0.00 0.00 0.00 2.62
139 140 5.075900 TCCACCTATTTCCCCTTTCTTCTTT 59.924 40.000 0.00 0.00 0.00 2.52
140 141 4.606255 TCCACCTATTTCCCCTTTCTTCTT 59.394 41.667 0.00 0.00 0.00 2.52
141 142 4.183916 TCCACCTATTTCCCCTTTCTTCT 58.816 43.478 0.00 0.00 0.00 2.85
142 143 4.586306 TCCACCTATTTCCCCTTTCTTC 57.414 45.455 0.00 0.00 0.00 2.87
143 144 5.134509 CCTATCCACCTATTTCCCCTTTCTT 59.865 44.000 0.00 0.00 0.00 2.52
144 145 4.665483 CCTATCCACCTATTTCCCCTTTCT 59.335 45.833 0.00 0.00 0.00 2.52
145 146 4.202577 CCCTATCCACCTATTTCCCCTTTC 60.203 50.000 0.00 0.00 0.00 2.62
146 147 3.727391 CCCTATCCACCTATTTCCCCTTT 59.273 47.826 0.00 0.00 0.00 3.11
147 148 3.312918 ACCCTATCCACCTATTTCCCCTT 60.313 47.826 0.00 0.00 0.00 3.95
148 149 2.255649 ACCCTATCCACCTATTTCCCCT 59.744 50.000 0.00 0.00 0.00 4.79
149 150 2.714808 ACCCTATCCACCTATTTCCCC 58.285 52.381 0.00 0.00 0.00 4.81
150 151 4.808767 AAACCCTATCCACCTATTTCCC 57.191 45.455 0.00 0.00 0.00 3.97
151 152 4.893524 CCAAAACCCTATCCACCTATTTCC 59.106 45.833 0.00 0.00 0.00 3.13
152 153 4.341235 GCCAAAACCCTATCCACCTATTTC 59.659 45.833 0.00 0.00 0.00 2.17
153 154 4.016572 AGCCAAAACCCTATCCACCTATTT 60.017 41.667 0.00 0.00 0.00 1.40
154 155 3.531814 AGCCAAAACCCTATCCACCTATT 59.468 43.478 0.00 0.00 0.00 1.73
155 156 3.131252 AGCCAAAACCCTATCCACCTAT 58.869 45.455 0.00 0.00 0.00 2.57
156 157 2.568979 AGCCAAAACCCTATCCACCTA 58.431 47.619 0.00 0.00 0.00 3.08
157 158 1.382914 AGCCAAAACCCTATCCACCT 58.617 50.000 0.00 0.00 0.00 4.00
158 159 2.100197 GAAGCCAAAACCCTATCCACC 58.900 52.381 0.00 0.00 0.00 4.61
159 160 2.100197 GGAAGCCAAAACCCTATCCAC 58.900 52.381 0.00 0.00 0.00 4.02
160 161 1.340600 CGGAAGCCAAAACCCTATCCA 60.341 52.381 0.00 0.00 0.00 3.41
161 162 1.064979 TCGGAAGCCAAAACCCTATCC 60.065 52.381 0.00 0.00 0.00 2.59
162 163 2.014857 GTCGGAAGCCAAAACCCTATC 58.985 52.381 0.00 0.00 0.00 2.08
163 164 1.677820 CGTCGGAAGCCAAAACCCTAT 60.678 52.381 0.00 0.00 0.00 2.57
164 165 0.320946 CGTCGGAAGCCAAAACCCTA 60.321 55.000 0.00 0.00 0.00 3.53
165 166 1.599797 CGTCGGAAGCCAAAACCCT 60.600 57.895 0.00 0.00 0.00 4.34
166 167 1.848932 GACGTCGGAAGCCAAAACCC 61.849 60.000 0.00 0.00 0.00 4.11
167 168 0.883370 AGACGTCGGAAGCCAAAACC 60.883 55.000 10.46 0.00 0.00 3.27
168 169 0.234884 CAGACGTCGGAAGCCAAAAC 59.765 55.000 10.41 0.00 0.00 2.43
169 170 0.882927 CCAGACGTCGGAAGCCAAAA 60.883 55.000 17.70 0.00 0.00 2.44
170 171 1.301401 CCAGACGTCGGAAGCCAAA 60.301 57.895 17.70 0.00 0.00 3.28
171 172 2.342279 CCAGACGTCGGAAGCCAA 59.658 61.111 17.70 0.00 0.00 4.52
172 173 4.373116 GCCAGACGTCGGAAGCCA 62.373 66.667 24.32 0.00 0.00 4.75
173 174 2.221906 TAAGCCAGACGTCGGAAGCC 62.222 60.000 24.32 10.66 0.00 4.35
174 175 0.389426 TTAAGCCAGACGTCGGAAGC 60.389 55.000 24.32 18.42 0.00 3.86
175 176 2.074547 TTTAAGCCAGACGTCGGAAG 57.925 50.000 24.32 10.72 0.00 3.46
176 177 2.754946 ATTTAAGCCAGACGTCGGAA 57.245 45.000 24.32 13.11 0.00 4.30
177 178 2.480759 GCTATTTAAGCCAGACGTCGGA 60.481 50.000 24.32 8.39 46.25 4.55
178 179 1.859080 GCTATTTAAGCCAGACGTCGG 59.141 52.381 18.30 18.30 46.25 4.79
189 190 2.104963 AGGAAGGAGGCGGCTATTTAAG 59.895 50.000 13.24 0.00 0.00 1.85
190 191 2.104281 GAGGAAGGAGGCGGCTATTTAA 59.896 50.000 13.24 0.00 0.00 1.52
191 192 1.692519 GAGGAAGGAGGCGGCTATTTA 59.307 52.381 13.24 0.00 0.00 1.40
192 193 0.470341 GAGGAAGGAGGCGGCTATTT 59.530 55.000 13.24 9.53 0.00 1.40
193 194 1.749334 CGAGGAAGGAGGCGGCTATT 61.749 60.000 13.24 10.38 0.00 1.73
194 195 2.203771 CGAGGAAGGAGGCGGCTAT 61.204 63.158 13.24 0.00 0.00 2.97
195 196 2.833582 CGAGGAAGGAGGCGGCTA 60.834 66.667 13.24 0.00 0.00 3.93
199 200 3.532155 CTCCCGAGGAAGGAGGCG 61.532 72.222 0.00 0.00 46.14 5.52
237 238 2.357034 TCCTCCGCTTCACGTTGC 60.357 61.111 0.00 0.00 41.42 4.17
238 239 1.738099 CCTCCTCCGCTTCACGTTG 60.738 63.158 0.00 0.00 41.42 4.10
239 240 2.657237 CCTCCTCCGCTTCACGTT 59.343 61.111 0.00 0.00 41.42 3.99
240 241 4.070552 GCCTCCTCCGCTTCACGT 62.071 66.667 0.00 0.00 41.42 4.49
241 242 4.069232 TGCCTCCTCCGCTTCACG 62.069 66.667 0.00 0.00 43.15 4.35
242 243 2.435059 GTGCCTCCTCCGCTTCAC 60.435 66.667 0.00 0.00 0.00 3.18
243 244 3.706373 GGTGCCTCCTCCGCTTCA 61.706 66.667 0.00 0.00 0.00 3.02
244 245 4.475135 GGGTGCCTCCTCCGCTTC 62.475 72.222 0.00 0.00 36.25 3.86
248 249 3.775654 GACAGGGTGCCTCCTCCG 61.776 72.222 0.00 0.00 34.31 4.63
249 250 2.607750 TGACAGGGTGCCTCCTCC 60.608 66.667 0.00 0.00 34.31 4.30
250 251 1.557269 ATGTGACAGGGTGCCTCCTC 61.557 60.000 0.00 0.00 34.31 3.71
251 252 1.539869 ATGTGACAGGGTGCCTCCT 60.540 57.895 0.00 0.00 37.71 3.69
252 253 1.377725 CATGTGACAGGGTGCCTCC 60.378 63.158 0.00 0.00 0.00 4.30
253 254 1.377725 CCATGTGACAGGGTGCCTC 60.378 63.158 8.33 0.00 29.93 4.70
254 255 1.426251 TTCCATGTGACAGGGTGCCT 61.426 55.000 16.51 0.00 36.61 4.75
255 256 0.539438 TTTCCATGTGACAGGGTGCC 60.539 55.000 16.51 0.00 36.61 5.01
256 257 1.327303 TTTTCCATGTGACAGGGTGC 58.673 50.000 16.51 0.00 36.61 5.01
257 258 5.720371 TTTATTTTCCATGTGACAGGGTG 57.280 39.130 16.51 0.00 36.61 4.61
258 259 6.739331 TTTTTATTTTCCATGTGACAGGGT 57.261 33.333 16.51 0.00 36.61 4.34
278 279 3.456277 AGACTGTCAGGTCCTGTCTTTTT 59.544 43.478 18.65 0.00 37.72 1.94
282 283 3.748645 ATAGACTGTCAGGTCCTGTCT 57.251 47.619 18.65 15.38 41.88 3.41
286 287 2.755655 CACGAATAGACTGTCAGGTCCT 59.244 50.000 10.88 1.21 36.95 3.85
294 295 1.066858 CCACCAGCACGAATAGACTGT 60.067 52.381 0.00 0.00 0.00 3.55
297 298 0.249398 ACCCACCAGCACGAATAGAC 59.751 55.000 0.00 0.00 0.00 2.59
305 306 3.964875 CACGCAACCCACCAGCAC 61.965 66.667 0.00 0.00 0.00 4.40
323 324 3.839432 GACGAGGAGAAGGGCGGG 61.839 72.222 0.00 0.00 0.00 6.13
325 326 3.068691 TGGACGAGGAGAAGGGCG 61.069 66.667 0.00 0.00 0.00 6.13
326 327 2.579738 GTGGACGAGGAGAAGGGC 59.420 66.667 0.00 0.00 0.00 5.19
327 328 0.905337 AAGGTGGACGAGGAGAAGGG 60.905 60.000 0.00 0.00 0.00 3.95
328 329 0.533032 GAAGGTGGACGAGGAGAAGG 59.467 60.000 0.00 0.00 0.00 3.46
329 330 0.533032 GGAAGGTGGACGAGGAGAAG 59.467 60.000 0.00 0.00 0.00 2.85
334 335 2.320781 AGATATGGAAGGTGGACGAGG 58.679 52.381 0.00 0.00 0.00 4.63
349 350 3.072184 GCTGGTGACATGGGAGAAGATAT 59.928 47.826 0.00 0.00 41.51 1.63
355 356 2.981302 CGCTGGTGACATGGGAGA 59.019 61.111 0.00 0.00 41.51 3.71
358 359 3.434319 GTGCGCTGGTGACATGGG 61.434 66.667 9.73 0.00 41.51 4.00
372 373 1.510844 CCCTTTTGGCCGTATGTGC 59.489 57.895 0.00 0.00 38.58 4.57
411 434 2.281070 ACTGTGGCACTTGCGAGG 60.281 61.111 19.83 3.08 43.26 4.63
521 544 2.856988 ATTGGGGACGGTGTGGGT 60.857 61.111 0.00 0.00 0.00 4.51
547 570 6.036300 ACGTTTCGTTTTTGTATTCTGACAGA 59.964 34.615 0.00 0.00 36.35 3.41
549 572 5.960683 CACGTTTCGTTTTTGTATTCTGACA 59.039 36.000 0.00 0.00 38.32 3.58
550 573 5.108891 GCACGTTTCGTTTTTGTATTCTGAC 60.109 40.000 0.00 0.00 38.32 3.51
551 574 4.965158 GCACGTTTCGTTTTTGTATTCTGA 59.035 37.500 0.00 0.00 38.32 3.27
730 772 1.677966 GGGAAAAGCGAAGGGGGTC 60.678 63.158 0.00 0.00 0.00 4.46
731 773 2.439245 GGGAAAAGCGAAGGGGGT 59.561 61.111 0.00 0.00 0.00 4.95
732 774 2.362503 GGGGAAAAGCGAAGGGGG 60.363 66.667 0.00 0.00 0.00 5.40
733 775 1.378646 GAGGGGAAAAGCGAAGGGG 60.379 63.158 0.00 0.00 0.00 4.79
734 776 1.378646 GGAGGGGAAAAGCGAAGGG 60.379 63.158 0.00 0.00 0.00 3.95
735 777 1.745489 CGGAGGGGAAAAGCGAAGG 60.745 63.158 0.00 0.00 0.00 3.46
736 778 2.399356 GCGGAGGGGAAAAGCGAAG 61.399 63.158 0.00 0.00 0.00 3.79
737 779 2.359478 GCGGAGGGGAAAAGCGAA 60.359 61.111 0.00 0.00 0.00 4.70
738 780 3.310860 GAGCGGAGGGGAAAAGCGA 62.311 63.158 0.00 0.00 0.00 4.93
739 781 2.820037 GAGCGGAGGGGAAAAGCG 60.820 66.667 0.00 0.00 0.00 4.68
853 896 4.354943 AGGGGAGGGGTGTGGGAG 62.355 72.222 0.00 0.00 0.00 4.30
857 900 2.204151 AAGGAGGGGAGGGGTGTG 60.204 66.667 0.00 0.00 0.00 3.82
858 901 2.125225 GAAGGAGGGGAGGGGTGT 59.875 66.667 0.00 0.00 0.00 4.16
859 902 2.692741 GGAAGGAGGGGAGGGGTG 60.693 72.222 0.00 0.00 0.00 4.61
860 903 2.882143 AGGAAGGAGGGGAGGGGT 60.882 66.667 0.00 0.00 0.00 4.95
865 908 2.042843 GCGAGAGGAAGGAGGGGA 60.043 66.667 0.00 0.00 0.00 4.81
990 1033 2.746277 GGCAACATCGCGGGAAGT 60.746 61.111 6.13 5.18 0.00 3.01
1052 1098 1.224069 ATGCATCCGAATTCCGAGCG 61.224 55.000 0.00 0.00 41.76 5.03
1090 1136 2.045045 CCCAATTCCGCTCCTGCA 60.045 61.111 0.00 0.00 39.64 4.41
1111 1168 0.803117 CGAAGCCTCACGACACTAGA 59.197 55.000 0.00 0.00 0.00 2.43
1116 1173 2.338620 CACCGAAGCCTCACGACA 59.661 61.111 0.00 0.00 0.00 4.35
1118 1175 3.611674 TGCACCGAAGCCTCACGA 61.612 61.111 0.00 0.00 0.00 4.35
1131 1188 4.436050 CCGAATCAAATCAGTACAGTGCAC 60.436 45.833 9.40 9.40 0.00 4.57
1134 1191 5.862924 AACCGAATCAAATCAGTACAGTG 57.137 39.130 0.00 0.00 0.00 3.66
1152 1209 2.026879 CGCCCAAACACCAAACCG 59.973 61.111 0.00 0.00 0.00 4.44
1599 1662 2.236146 TCTACCAGATGGACACGCAATT 59.764 45.455 5.72 0.00 38.94 2.32
1607 1670 3.742640 GCTCCACAATCTACCAGATGGAC 60.743 52.174 5.72 0.00 34.65 4.02
1611 1674 2.769209 AGGCTCCACAATCTACCAGAT 58.231 47.619 0.00 0.00 36.28 2.90
1669 1732 1.733389 GCGCTAGTACCAAGTACGCAA 60.733 52.381 0.00 0.00 43.05 4.85
1703 1766 6.314018 CACTTTTGCACGCATTTCTAGATAA 58.686 36.000 0.00 0.00 0.00 1.75
1728 1793 7.973944 TGCAGTTCACAACTATACTAGTACATG 59.026 37.037 4.31 4.83 40.46 3.21
1795 1860 5.283457 TGTTAACATGTTTTTCCCCCAAG 57.717 39.130 17.78 0.00 0.00 3.61
1916 1981 6.312426 TGGCCGCATATTTTCTGTAATTTTTG 59.688 34.615 0.00 0.00 0.00 2.44
1918 1983 5.810074 GTGGCCGCATATTTTCTGTAATTTT 59.190 36.000 12.58 0.00 0.00 1.82
1949 2020 5.924356 TCAATCAACAAAGACCTGTACAGA 58.076 37.500 24.68 0.24 0.00 3.41
1955 2026 7.428020 TGAAGAAATCAATCAACAAAGACCTG 58.572 34.615 0.00 0.00 34.30 4.00
2035 2109 6.993079 TCTTATAAACAGACTTGCACTGAGA 58.007 36.000 9.59 0.00 38.55 3.27
2097 2171 6.926630 TTTCCTATTTTGCACCCAGTTTAT 57.073 33.333 0.00 0.00 0.00 1.40
2171 2247 2.419436 CCATCACACAATGCATGCCAAT 60.419 45.455 16.68 0.00 0.00 3.16
2185 2261 1.330234 ATGTGTTTGCAGCCATCACA 58.670 45.000 11.66 11.66 39.03 3.58
2230 2306 1.603802 CAGAACACGTCAAAGGCACAT 59.396 47.619 0.00 0.00 0.00 3.21
2242 2318 1.655484 TCCAGCATATGCAGAACACG 58.345 50.000 28.62 8.52 45.16 4.49
2256 2332 8.164539 GTTCTATTGGAAGCAAGCTATCCAGC 62.165 46.154 18.47 0.00 43.69 4.85
2329 2409 9.581289 CCCAGTTTCACCATTACCATTATATTA 57.419 33.333 0.00 0.00 0.00 0.98
2457 2537 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2458 2538 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2459 2539 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2460 2540 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2461 2541 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2462 2542 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2463 2543 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2464 2544 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2465 2545 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2466 2546 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
2467 2547 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
2468 2548 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
2469 2549 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
2470 2550 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
2471 2551 3.877508 CCATTCCTCCGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
2472 2552 4.766375 TCCATTCCTCCGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
2473 2553 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
2474 2554 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
2475 2555 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
2476 2556 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
2477 2557 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
2478 2558 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
2479 2559 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
2480 2560 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
2481 2561 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
2482 2562 5.010933 GTCTAGATACATCCATTCCTCCGA 58.989 45.833 0.00 0.00 0.00 4.55
2483 2563 4.142578 CGTCTAGATACATCCATTCCTCCG 60.143 50.000 0.00 0.00 0.00 4.63
2484 2564 4.767928 ACGTCTAGATACATCCATTCCTCC 59.232 45.833 0.00 0.00 0.00 4.30
2485 2565 5.968528 ACGTCTAGATACATCCATTCCTC 57.031 43.478 0.00 0.00 0.00 3.71
2486 2566 8.423906 AAATACGTCTAGATACATCCATTCCT 57.576 34.615 0.00 0.00 0.00 3.36
2518 2598 9.812347 AGGAATGCATAAAAATGGATGTATCTA 57.188 29.630 0.00 0.00 32.82 1.98
2519 2599 8.716674 AGGAATGCATAAAAATGGATGTATCT 57.283 30.769 0.00 0.00 32.82 1.98
2520 2600 8.031277 GGAGGAATGCATAAAAATGGATGTATC 58.969 37.037 0.00 0.00 32.82 2.24
2521 2601 7.309377 CGGAGGAATGCATAAAAATGGATGTAT 60.309 37.037 0.00 0.00 32.82 2.29
2522 2602 6.016360 CGGAGGAATGCATAAAAATGGATGTA 60.016 38.462 0.00 0.00 32.82 2.29
2523 2603 5.221303 CGGAGGAATGCATAAAAATGGATGT 60.221 40.000 0.00 0.00 32.82 3.06
2524 2604 5.009911 TCGGAGGAATGCATAAAAATGGATG 59.990 40.000 0.00 0.00 32.82 3.51
2525 2605 5.010012 GTCGGAGGAATGCATAAAAATGGAT 59.990 40.000 0.00 0.00 33.93 3.41
2526 2606 4.338118 GTCGGAGGAATGCATAAAAATGGA 59.662 41.667 0.00 0.00 0.00 3.41
2527 2607 4.097741 TGTCGGAGGAATGCATAAAAATGG 59.902 41.667 0.00 0.00 0.00 3.16
2528 2608 5.247507 TGTCGGAGGAATGCATAAAAATG 57.752 39.130 0.00 0.00 0.00 2.32
2529 2609 5.418840 ACTTGTCGGAGGAATGCATAAAAAT 59.581 36.000 0.00 0.00 0.00 1.82
2530 2610 4.764823 ACTTGTCGGAGGAATGCATAAAAA 59.235 37.500 0.00 0.00 0.00 1.94
2531 2611 4.331968 ACTTGTCGGAGGAATGCATAAAA 58.668 39.130 0.00 0.00 0.00 1.52
2532 2612 3.950397 ACTTGTCGGAGGAATGCATAAA 58.050 40.909 0.00 0.00 0.00 1.40
2533 2613 3.627395 ACTTGTCGGAGGAATGCATAA 57.373 42.857 0.00 0.00 0.00 1.90
2534 2614 4.955811 ATACTTGTCGGAGGAATGCATA 57.044 40.909 0.00 0.00 0.00 3.14
2535 2615 3.845781 ATACTTGTCGGAGGAATGCAT 57.154 42.857 0.00 0.00 0.00 3.96
2536 2616 3.627395 AATACTTGTCGGAGGAATGCA 57.373 42.857 0.00 0.00 0.00 3.96
2537 2617 3.312697 GGAAATACTTGTCGGAGGAATGC 59.687 47.826 0.00 0.00 0.00 3.56
2538 2618 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
2539 2619 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
2540 2620 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
2541 2621 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
2542 2622 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
2543 2623 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2544 2624 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
2545 2625 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2546 2626 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2547 2627 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2548 2628 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2549 2629 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2550 2630 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2551 2631 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2552 2632 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2553 2633 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2554 2634 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2555 2635 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2556 2636 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2557 2637 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2558 2638 0.107017 TAACTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
2559 2639 1.607628 CATAACTACTCCCTCCGTCCG 59.392 57.143 0.00 0.00 0.00 4.79
2560 2640 2.664015 ACATAACTACTCCCTCCGTCC 58.336 52.381 0.00 0.00 0.00 4.79
2561 2641 3.819902 CCTACATAACTACTCCCTCCGTC 59.180 52.174 0.00 0.00 0.00 4.79
2562 2642 3.461085 TCCTACATAACTACTCCCTCCGT 59.539 47.826 0.00 0.00 0.00 4.69
2563 2643 4.096190 TCCTACATAACTACTCCCTCCG 57.904 50.000 0.00 0.00 0.00 4.63
2564 2644 4.281435 GCTTCCTACATAACTACTCCCTCC 59.719 50.000 0.00 0.00 0.00 4.30
2565 2645 4.894114 TGCTTCCTACATAACTACTCCCTC 59.106 45.833 0.00 0.00 0.00 4.30
2566 2646 4.880164 TGCTTCCTACATAACTACTCCCT 58.120 43.478 0.00 0.00 0.00 4.20
2567 2647 5.609533 TTGCTTCCTACATAACTACTCCC 57.390 43.478 0.00 0.00 0.00 4.30
2568 2648 8.507524 AAAATTGCTTCCTACATAACTACTCC 57.492 34.615 0.00 0.00 0.00 3.85
2628 2709 2.159841 CGTGACGTAACATTTCCTGCAG 60.160 50.000 6.78 6.78 0.00 4.41
3029 3110 8.788325 AATAACCGAATATAAATACCTCTGCC 57.212 34.615 0.00 0.00 0.00 4.85
3126 3207 3.508845 ACAAGGTGTAATCAGCAGGTT 57.491 42.857 0.00 0.00 43.57 3.50
3163 3244 8.611051 AGTTTACAGAGGGAGTAGTTGATATT 57.389 34.615 0.00 0.00 0.00 1.28
3164 3245 9.710818 TTAGTTTACAGAGGGAGTAGTTGATAT 57.289 33.333 0.00 0.00 0.00 1.63
3165 3246 9.710818 ATTAGTTTACAGAGGGAGTAGTTGATA 57.289 33.333 0.00 0.00 0.00 2.15
3186 3267 9.900710 CAGTGATCTAAACGCTCTTATATTAGT 57.099 33.333 0.00 0.00 0.00 2.24
3190 3271 8.634444 ACTTCAGTGATCTAAACGCTCTTATAT 58.366 33.333 0.00 0.00 0.00 0.86
3194 3275 5.140747 ACTTCAGTGATCTAAACGCTCTT 57.859 39.130 0.00 0.00 0.00 2.85
3195 3276 4.792521 ACTTCAGTGATCTAAACGCTCT 57.207 40.909 0.00 0.00 0.00 4.09
3197 3278 5.646577 ACTACTTCAGTGATCTAAACGCT 57.353 39.130 0.00 0.00 35.62 5.07
3198 3279 7.988904 ATTACTACTTCAGTGATCTAAACGC 57.011 36.000 0.00 0.00 38.24 4.84
3205 3286 9.303537 GGTGTTTAGATTACTACTTCAGTGATC 57.696 37.037 0.00 1.98 45.99 2.92
3206 3287 8.258708 GGGTGTTTAGATTACTACTTCAGTGAT 58.741 37.037 0.00 0.00 38.24 3.06
3207 3288 7.453752 AGGGTGTTTAGATTACTACTTCAGTGA 59.546 37.037 0.00 0.00 38.24 3.41
3208 3289 7.612677 AGGGTGTTTAGATTACTACTTCAGTG 58.387 38.462 0.00 0.00 38.24 3.66
3209 3290 7.793948 AGGGTGTTTAGATTACTACTTCAGT 57.206 36.000 0.00 0.00 41.62 3.41
3226 3307 9.470399 CCCTTTGTAAACTAATATAAGGGTGTT 57.530 33.333 0.00 0.00 0.00 3.32
3227 3308 8.838741 TCCCTTTGTAAACTAATATAAGGGTGT 58.161 33.333 14.70 0.00 33.70 4.16
3228 3309 9.338622 CTCCCTTTGTAAACTAATATAAGGGTG 57.661 37.037 14.70 9.89 33.70 4.61
3229 3310 9.065722 ACTCCCTTTGTAAACTAATATAAGGGT 57.934 33.333 14.70 0.00 33.70 4.34
3297 3411 5.723492 TGAAGTACATCGCTGATTTGATG 57.277 39.130 0.00 0.93 45.83 3.07
3381 3496 2.303163 TGCATTTGCTTGGATGATGC 57.697 45.000 3.94 0.00 42.48 3.91
3415 3530 4.202101 ACACGATCCTATCAGCTCAGAAAG 60.202 45.833 0.00 0.00 0.00 2.62
3417 3532 3.291584 ACACGATCCTATCAGCTCAGAA 58.708 45.455 0.00 0.00 0.00 3.02
3421 3536 2.715737 GGACACGATCCTATCAGCTC 57.284 55.000 0.00 0.00 45.22 4.09
3434 3549 2.485266 TACATCGCATACTGGACACG 57.515 50.000 0.00 0.00 0.00 4.49
3462 3577 7.713734 ATACTAGATACATTAGCGGCCTAAA 57.286 36.000 0.00 0.00 37.12 1.85
3487 3602 6.180472 ACTGCAGCCTAAGTATTTACATGTT 58.820 36.000 15.27 0.00 0.00 2.71
3489 3604 6.683974 AACTGCAGCCTAAGTATTTACATG 57.316 37.500 15.27 0.00 0.00 3.21
3546 3661 9.853555 CATGCAATTAAAAGGTTAGTCATGTTA 57.146 29.630 0.00 0.00 0.00 2.41
3548 3663 7.039082 ACCATGCAATTAAAAGGTTAGTCATGT 60.039 33.333 0.00 0.00 0.00 3.21
3562 3677 8.219546 TCGAGATATTTTCACCATGCAATTAA 57.780 30.769 0.00 0.00 0.00 1.40
3697 3813 7.867403 AGAACGGTAAGTCGACATTAAGTTTTA 59.133 33.333 19.50 1.86 0.00 1.52
3710 3826 6.501781 AGTCCATATTAAGAACGGTAAGTCG 58.498 40.000 0.00 0.00 0.00 4.18
3933 4049 0.103937 CTGTCTTCCGGAGCTCATCC 59.896 60.000 17.19 0.00 45.64 3.51
4152 4268 4.050553 CAACAATCGCAACTCCATTGTTT 58.949 39.130 6.54 0.00 44.59 2.83
4598 4714 0.877743 GCTGAGTTCAAAGACCCTGC 59.122 55.000 0.00 0.00 0.00 4.85
4605 4721 0.321122 AGGCGAGGCTGAGTTCAAAG 60.321 55.000 0.00 0.00 0.00 2.77
4620 4736 1.741706 ACATTCTCAATTGCAGAGGCG 59.258 47.619 0.00 1.05 45.35 5.52
4770 4886 7.062605 GTCATTGCAGAAAGGAATTGTACAATG 59.937 37.037 21.46 9.27 41.84 2.82
4790 4906 4.621068 AGGTATGCATCGTTTGTCATTG 57.379 40.909 0.19 0.00 0.00 2.82
4900 5016 1.818060 TGATGGCTGGAAAATGGAACG 59.182 47.619 0.00 0.00 0.00 3.95
4964 5080 0.111446 TGGCTGGAAAATGGAACGGA 59.889 50.000 0.00 0.00 0.00 4.69
4966 5082 1.818060 TGATGGCTGGAAAATGGAACG 59.182 47.619 0.00 0.00 0.00 3.95
4967 5083 5.127682 AGTTATGATGGCTGGAAAATGGAAC 59.872 40.000 0.00 0.00 0.00 3.62
4969 5085 4.870636 AGTTATGATGGCTGGAAAATGGA 58.129 39.130 0.00 0.00 0.00 3.41
4971 5087 5.585390 GTGAGTTATGATGGCTGGAAAATG 58.415 41.667 0.00 0.00 0.00 2.32
4972 5088 4.336433 CGTGAGTTATGATGGCTGGAAAAT 59.664 41.667 0.00 0.00 0.00 1.82
5045 5161 7.030075 TGAAATGTATGTATGCAGTTGATGG 57.970 36.000 0.63 0.00 31.25 3.51
5073 5189 1.283905 GGGGCCAGGAGCTTACTTAAA 59.716 52.381 4.39 0.00 43.05 1.52
5139 5255 1.138036 CAGTCGCATTGCCACATGG 59.862 57.895 9.09 0.00 38.53 3.66
5189 5305 3.002791 TCCTCAAAACATGATGCTCGAC 58.997 45.455 0.00 0.00 37.44 4.20
5221 5337 6.753913 AGCATCCTCATAAGAAGTCCATAA 57.246 37.500 0.00 0.00 0.00 1.90
5308 5424 6.265196 TGCAGTCACATTGAGAAAGGTTTTAT 59.735 34.615 0.00 0.00 0.00 1.40
5309 5425 5.592282 TGCAGTCACATTGAGAAAGGTTTTA 59.408 36.000 0.00 0.00 0.00 1.52
5310 5426 4.402155 TGCAGTCACATTGAGAAAGGTTTT 59.598 37.500 0.00 0.00 0.00 2.43
5336 5452 9.545105 TCTGTAAATGAACTAAAACTAACGGAA 57.455 29.630 0.00 0.00 0.00 4.30
5343 5467 9.143155 ACCCAATTCTGTAAATGAACTAAAACT 57.857 29.630 0.00 0.00 0.00 2.66
5354 5478 6.916360 AACATGACACCCAATTCTGTAAAT 57.084 33.333 0.00 0.00 0.00 1.40
5369 5493 3.753815 TCAGCATCCTCAAAACATGACA 58.246 40.909 0.00 0.00 33.47 3.58
5370 5494 4.978083 ATCAGCATCCTCAAAACATGAC 57.022 40.909 0.00 0.00 33.47 3.06
5440 5564 7.876582 ACAGAGGGAGTACTAAACAATTTGTAC 59.123 37.037 1.76 0.00 43.58 2.90
5508 5632 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
5509 5633 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
5511 5635 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
5512 5636 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
5513 5637 7.232941 TCCTCCCTCCGTAAAGAAATATAAGAG 59.767 40.741 0.00 0.00 0.00 2.85
5514 5638 7.071273 TCCTCCCTCCGTAAAGAAATATAAGA 58.929 38.462 0.00 0.00 0.00 2.10
5515 5639 7.299246 TCCTCCCTCCGTAAAGAAATATAAG 57.701 40.000 0.00 0.00 0.00 1.73
5516 5640 7.679732 TTCCTCCCTCCGTAAAGAAATATAA 57.320 36.000 0.00 0.00 0.00 0.98
5517 5641 7.867160 ATTCCTCCCTCCGTAAAGAAATATA 57.133 36.000 0.00 0.00 0.00 0.86
5519 5643 7.679732 TTATTCCTCCCTCCGTAAAGAAATA 57.320 36.000 0.00 0.00 0.00 1.40
5520 5644 6.570654 TTATTCCTCCCTCCGTAAAGAAAT 57.429 37.500 0.00 0.00 0.00 2.17
5521 5645 6.570654 ATTATTCCTCCCTCCGTAAAGAAA 57.429 37.500 0.00 0.00 0.00 2.52
5523 5647 6.570654 AAATTATTCCTCCCTCCGTAAAGA 57.429 37.500 0.00 0.00 0.00 2.52
5524 5648 8.618677 GTTTAAATTATTCCTCCCTCCGTAAAG 58.381 37.037 0.00 0.00 0.00 1.85
5525 5649 7.557358 GGTTTAAATTATTCCTCCCTCCGTAAA 59.443 37.037 0.00 0.00 0.00 2.01
5527 5651 6.387807 AGGTTTAAATTATTCCTCCCTCCGTA 59.612 38.462 0.00 0.00 0.00 4.02
5541 5707 7.040548 CCGTTAAACTGTGGGAGGTTTAAATTA 60.041 37.037 11.02 0.00 44.20 1.40
5553 5719 5.441709 ACAAATTACCGTTAAACTGTGGG 57.558 39.130 0.00 0.00 0.00 4.61
5556 5722 8.161699 AGATCAACAAATTACCGTTAAACTGT 57.838 30.769 0.00 0.00 0.00 3.55
5562 5728 6.938030 AGGACAAGATCAACAAATTACCGTTA 59.062 34.615 0.00 0.00 0.00 3.18
5564 5730 5.181245 CAGGACAAGATCAACAAATTACCGT 59.819 40.000 0.00 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.