Multiple sequence alignment - TraesCS3B01G387500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G387500 chr3B 100.000 4274 0 0 1 4274 609800587 609804860 0.000000e+00 7893.0
1 TraesCS3B01G387500 chr3B 95.146 206 9 1 4070 4274 536445892 536446097 1.480000e-84 324.0
2 TraesCS3B01G387500 chr3B 94.175 206 11 1 4070 4274 28259106 28258901 3.210000e-81 313.0
3 TraesCS3B01G387500 chr3B 95.918 49 1 1 321 369 595425328 595425375 1.270000e-10 78.7
4 TraesCS3B01G387500 chr3A 94.307 3425 131 20 505 3882 602224081 602227488 0.000000e+00 5186.0
5 TraesCS3B01G387500 chr3A 90.722 291 23 4 1 289 602223380 602223668 6.700000e-103 385.0
6 TraesCS3B01G387500 chr3D 94.196 3446 100 25 368 3788 460179071 460182441 0.000000e+00 5164.0
7 TraesCS3B01G387500 chr3D 89.493 276 26 3 1 275 460178685 460178958 3.160000e-91 346.0
8 TraesCS3B01G387500 chr3D 94.845 97 5 0 3951 4047 460191032 460191128 7.400000e-33 152.0
9 TraesCS3B01G387500 chr3D 94.545 55 2 1 325 378 93194882 93194936 2.740000e-12 84.2
10 TraesCS3B01G387500 chr3D 90.741 54 3 2 325 377 41272529 41272581 2.130000e-08 71.3
11 TraesCS3B01G387500 chr1B 78.169 1933 343 70 1386 3274 50204102 50205999 0.000000e+00 1158.0
12 TraesCS3B01G387500 chr1B 95.238 210 9 1 4066 4274 684807743 684807534 8.860000e-87 331.0
13 TraesCS3B01G387500 chr1B 94.146 205 11 1 4071 4274 679333722 679333926 1.150000e-80 311.0
14 TraesCS3B01G387500 chr1D 77.997 1927 351 65 1386 3274 32738153 32740044 0.000000e+00 1142.0
15 TraesCS3B01G387500 chr1D 97.778 45 1 0 325 369 72674977 72674933 1.270000e-10 78.7
16 TraesCS3B01G387500 chr1D 97.727 44 1 0 324 367 371254035 371253992 4.580000e-10 76.8
17 TraesCS3B01G387500 chr1D 97.674 43 1 0 325 367 404241809 404241851 1.650000e-09 75.0
18 TraesCS3B01G387500 chr1A 77.446 1911 359 67 1406 3277 31254298 31252421 0.000000e+00 1075.0
19 TraesCS3B01G387500 chr4B 77.273 1936 356 61 1397 3272 428845424 428847335 0.000000e+00 1061.0
20 TraesCS3B01G387500 chr4B 76.899 1909 363 68 1415 3274 428899330 428901209 0.000000e+00 1011.0
21 TraesCS3B01G387500 chr4B 94.146 205 11 1 4071 4274 643289515 643289311 1.150000e-80 311.0
22 TraesCS3B01G387500 chr4A 76.510 1937 369 57 1397 3272 116852177 116850266 0.000000e+00 977.0
23 TraesCS3B01G387500 chr4A 95.745 47 2 0 325 371 476953402 476953356 4.580000e-10 76.8
24 TraesCS3B01G387500 chr5D 76.567 1882 379 54 1406 3265 102331926 102330085 0.000000e+00 976.0
25 TraesCS3B01G387500 chr5A 76.486 1884 377 57 1406 3265 96983793 96985634 0.000000e+00 965.0
26 TraesCS3B01G387500 chr4D 77.022 1780 344 57 1541 3274 348698405 348700165 0.000000e+00 961.0
27 TraesCS3B01G387500 chr4D 79.079 956 176 20 2329 3272 348565262 348566205 1.680000e-178 636.0
28 TraesCS3B01G387500 chr5B 76.421 1883 380 58 1406 3265 112021367 112019526 0.000000e+00 959.0
29 TraesCS3B01G387500 chr5B 93.897 213 10 3 4063 4274 498221488 498221278 6.900000e-83 318.0
30 TraesCS3B01G387500 chr5B 94.146 205 11 1 4071 4274 358809252 358809456 1.150000e-80 311.0
31 TraesCS3B01G387500 chr5B 94.231 52 0 3 325 375 77852410 77852361 4.580000e-10 76.8
32 TraesCS3B01G387500 chr6B 94.634 205 9 2 4071 4274 123831204 123831407 2.480000e-82 316.0
33 TraesCS3B01G387500 chr7B 94.146 205 11 1 4071 4274 63845466 63845262 1.150000e-80 311.0
34 TraesCS3B01G387500 chr7B 95.833 48 2 0 325 372 556430863 556430816 1.270000e-10 78.7
35 TraesCS3B01G387500 chr2B 77.436 195 42 2 11 204 28153037 28152844 9.710000e-22 115.0
36 TraesCS3B01G387500 chr2A 81.890 127 20 3 52 177 652880536 652880660 2.100000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G387500 chr3B 609800587 609804860 4273 False 7893.0 7893 100.0000 1 4274 1 chr3B.!!$F3 4273
1 TraesCS3B01G387500 chr3A 602223380 602227488 4108 False 2785.5 5186 92.5145 1 3882 2 chr3A.!!$F1 3881
2 TraesCS3B01G387500 chr3D 460178685 460182441 3756 False 2755.0 5164 91.8445 1 3788 2 chr3D.!!$F4 3787
3 TraesCS3B01G387500 chr1B 50204102 50205999 1897 False 1158.0 1158 78.1690 1386 3274 1 chr1B.!!$F1 1888
4 TraesCS3B01G387500 chr1D 32738153 32740044 1891 False 1142.0 1142 77.9970 1386 3274 1 chr1D.!!$F1 1888
5 TraesCS3B01G387500 chr1A 31252421 31254298 1877 True 1075.0 1075 77.4460 1406 3277 1 chr1A.!!$R1 1871
6 TraesCS3B01G387500 chr4B 428845424 428847335 1911 False 1061.0 1061 77.2730 1397 3272 1 chr4B.!!$F1 1875
7 TraesCS3B01G387500 chr4B 428899330 428901209 1879 False 1011.0 1011 76.8990 1415 3274 1 chr4B.!!$F2 1859
8 TraesCS3B01G387500 chr4A 116850266 116852177 1911 True 977.0 977 76.5100 1397 3272 1 chr4A.!!$R1 1875
9 TraesCS3B01G387500 chr5D 102330085 102331926 1841 True 976.0 976 76.5670 1406 3265 1 chr5D.!!$R1 1859
10 TraesCS3B01G387500 chr5A 96983793 96985634 1841 False 965.0 965 76.4860 1406 3265 1 chr5A.!!$F1 1859
11 TraesCS3B01G387500 chr4D 348698405 348700165 1760 False 961.0 961 77.0220 1541 3274 1 chr4D.!!$F2 1733
12 TraesCS3B01G387500 chr4D 348565262 348566205 943 False 636.0 636 79.0790 2329 3272 1 chr4D.!!$F1 943
13 TraesCS3B01G387500 chr5B 112019526 112021367 1841 True 959.0 959 76.4210 1406 3265 1 chr5B.!!$R2 1859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 211 0.037303 AAGGGGTGATCACACTGCAG 59.963 55.0 26.63 13.48 45.32 4.41 F
283 286 1.250840 GGCATTTTTCGCCCCAGAGT 61.251 55.0 0.00 0.00 44.22 3.24 F
464 701 1.400737 CGTTCCCGTTCTCTCCCTAT 58.599 55.0 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 2080 0.742505 GGTCGTGGATGATGTCGGTA 59.257 55.000 0.00 0.0 0.00 4.02 R
2409 2716 3.125376 GCCCAGGCGGATGAGGAAT 62.125 63.158 0.00 0.0 0.00 3.01 R
3281 3594 2.399611 GCTGTACGAATGCACGGC 59.600 61.111 1.59 0.0 39.67 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.684881 GACGTCGATGTACTTTCCCCTA 59.315 50.000 10.95 0.00 0.00 3.53
68 69 4.161001 ACGTCGATGTACTTTCCCCTATTT 59.839 41.667 8.94 0.00 0.00 1.40
69 70 4.506654 CGTCGATGTACTTTCCCCTATTTG 59.493 45.833 0.00 0.00 0.00 2.32
136 137 5.835280 AGGATGAACTGACATTTGTTTCCTT 59.165 36.000 0.00 0.00 32.56 3.36
138 139 5.913137 TGAACTGACATTTGTTTCCTTGT 57.087 34.783 0.00 0.00 0.00 3.16
141 142 7.831753 TGAACTGACATTTGTTTCCTTGTTAA 58.168 30.769 0.00 0.00 0.00 2.01
150 151 9.533253 CATTTGTTTCCTTGTTAAGACAGAAAT 57.467 29.630 1.11 0.00 34.49 2.17
209 211 0.037303 AAGGGGTGATCACACTGCAG 59.963 55.000 26.63 13.48 45.32 4.41
224 226 4.306471 CAGCGCGCAACCAAACGA 62.306 61.111 35.10 0.00 0.00 3.85
281 284 3.693411 GGCATTTTTCGCCCCAGA 58.307 55.556 0.00 0.00 44.22 3.86
282 285 1.512694 GGCATTTTTCGCCCCAGAG 59.487 57.895 0.00 0.00 44.22 3.35
283 286 1.250840 GGCATTTTTCGCCCCAGAGT 61.251 55.000 0.00 0.00 44.22 3.24
284 287 1.459450 GCATTTTTCGCCCCAGAGTA 58.541 50.000 0.00 0.00 0.00 2.59
286 289 1.743394 CATTTTTCGCCCCAGAGTACC 59.257 52.381 0.00 0.00 0.00 3.34
300 535 4.153475 CCAGAGTACCATAACACAAAACCG 59.847 45.833 0.00 0.00 0.00 4.44
350 585 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
351 586 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
387 622 3.751246 CATGTGCGCCCAGGTTGG 61.751 66.667 4.18 0.00 37.25 3.77
404 639 3.068590 GGTTGGATTGGTCAATATGCCAG 59.931 47.826 0.00 0.00 36.00 4.85
405 640 3.668141 TGGATTGGTCAATATGCCAGT 57.332 42.857 0.00 0.00 36.00 4.00
452 689 4.459331 CGCATTGCACCGTTCCCG 62.459 66.667 9.69 0.00 0.00 5.14
464 701 1.400737 CGTTCCCGTTCTCTCCCTAT 58.599 55.000 0.00 0.00 0.00 2.57
559 799 2.100989 TCTTTCTAACTCTCCGCTCCC 58.899 52.381 0.00 0.00 0.00 4.30
672 914 2.476051 GAGACCATGCACGCAACG 59.524 61.111 0.00 0.00 0.00 4.10
714 956 2.287251 CCCGATTCCTCCCCTCCT 59.713 66.667 0.00 0.00 0.00 3.69
780 1022 4.386951 CACCACATCCCGACCGCA 62.387 66.667 0.00 0.00 0.00 5.69
962 1214 2.564062 TGTTACCTTTACGCCAGTAGCT 59.436 45.455 0.00 0.00 40.39 3.32
1419 1675 4.451150 CGGACCAAGGCGCTGCTA 62.451 66.667 7.64 0.00 0.00 3.49
1662 1918 2.756025 CGAGACGCTCTCCTTCGCT 61.756 63.158 8.73 0.00 40.34 4.93
1704 1960 3.049674 CTCTGCGCCGCCAAGAAA 61.050 61.111 6.63 0.00 0.00 2.52
2289 2566 4.379243 CGCGGGAAGCTGGTGTCT 62.379 66.667 0.00 0.00 45.59 3.41
2478 2785 1.625818 ACCGTCTTCTTCAAGCTGGAT 59.374 47.619 0.00 0.00 31.42 3.41
3240 3553 3.053544 TCCGGATCCTCTTCTACTTCAGT 60.054 47.826 10.75 0.00 0.00 3.41
3277 3590 3.971245 AGAACAAGAGGAGGTGATCAC 57.029 47.619 17.91 17.91 0.00 3.06
3278 3591 2.232452 AGAACAAGAGGAGGTGATCACG 59.768 50.000 19.33 5.73 0.00 4.35
3279 3592 0.247736 ACAAGAGGAGGTGATCACGC 59.752 55.000 19.33 13.41 0.00 5.34
3280 3593 0.460987 CAAGAGGAGGTGATCACGCC 60.461 60.000 22.21 22.21 46.05 5.68
3333 3646 2.290464 ACGTTTGATTTGAACCGTCCA 58.710 42.857 0.00 0.00 0.00 4.02
3339 3652 3.556999 TGATTTGAACCGTCCAAGGAAA 58.443 40.909 0.00 0.00 34.73 3.13
3368 3681 7.441760 AGAAGATGATGACATGATTAAGCAGAC 59.558 37.037 0.00 0.00 36.82 3.51
3390 3706 3.305403 CGCCACACTATCATCTATCGGTT 60.305 47.826 0.00 0.00 0.00 4.44
3395 3711 6.461648 CCACACTATCATCTATCGGTTTCTGT 60.462 42.308 0.00 0.00 0.00 3.41
3508 3832 4.141413 ACATATGCTTTCCTATCCACTGCA 60.141 41.667 1.58 0.00 0.00 4.41
3510 3834 1.340017 TGCTTTCCTATCCACTGCACC 60.340 52.381 0.00 0.00 0.00 5.01
3526 3850 3.516615 TGCACCTTTTGTTCCTTTTTCG 58.483 40.909 0.00 0.00 0.00 3.46
3534 3858 6.252655 CCTTTTGTTCCTTTTTCGTAGTGTTG 59.747 38.462 0.00 0.00 0.00 3.33
3535 3859 5.883503 TTGTTCCTTTTTCGTAGTGTTGT 57.116 34.783 0.00 0.00 0.00 3.32
3536 3860 5.224562 TGTTCCTTTTTCGTAGTGTTGTG 57.775 39.130 0.00 0.00 0.00 3.33
3538 3862 5.411977 TGTTCCTTTTTCGTAGTGTTGTGAA 59.588 36.000 0.00 0.00 0.00 3.18
3619 3963 5.643664 GCAATCTGATGCAAAGTAACATGA 58.356 37.500 0.00 0.00 45.70 3.07
3627 3971 9.409312 CTGATGCAAAGTAACATGATTTTGTTA 57.591 29.630 0.00 0.00 40.25 2.41
3658 4005 3.250280 TCGATCTCTTATCCGTTTCTCCG 59.750 47.826 0.00 0.00 0.00 4.63
3679 4026 2.233676 GGCTTCACTTTATTTGGTGGGG 59.766 50.000 0.00 0.00 34.57 4.96
3727 4074 2.530497 GCGCCGTGTTGTTCACTGA 61.530 57.895 0.00 0.00 44.16 3.41
3788 4137 2.683362 CGAATAAAGCAGGACCCCTTTC 59.317 50.000 10.17 0.00 33.64 2.62
3808 4157 2.290367 TCCGAACAACAGAGCACAAATG 59.710 45.455 0.00 0.00 0.00 2.32
3828 4177 7.391554 ACAAATGTGTGCTTATCTCATGTTACT 59.608 33.333 0.00 0.00 36.31 2.24
3859 4208 9.729281 TCCTTTTATTATGTTCTTAACCGAACT 57.271 29.630 8.54 0.00 42.82 3.01
3867 4216 4.994852 TGTTCTTAACCGAACTTCAGATGG 59.005 41.667 8.54 0.00 42.82 3.51
3870 4219 5.717119 TCTTAACCGAACTTCAGATGGTAC 58.283 41.667 0.00 0.00 31.36 3.34
3871 4220 5.479375 TCTTAACCGAACTTCAGATGGTACT 59.521 40.000 0.00 0.00 31.36 2.73
3875 4224 6.388435 ACCGAACTTCAGATGGTACTATAC 57.612 41.667 0.00 0.00 0.00 1.47
3886 4235 9.011095 TCAGATGGTACTATACTAACATAGTGC 57.989 37.037 6.12 4.82 40.96 4.40
3887 4236 8.793592 CAGATGGTACTATACTAACATAGTGCA 58.206 37.037 11.66 0.00 42.56 4.57
3888 4237 9.535170 AGATGGTACTATACTAACATAGTGCAT 57.465 33.333 11.66 5.44 42.56 3.96
3891 4240 8.582437 TGGTACTATACTAACATAGTGCATTCC 58.418 37.037 11.66 5.60 42.56 3.01
3892 4241 8.582437 GGTACTATACTAACATAGTGCATTCCA 58.418 37.037 11.66 0.00 42.56 3.53
3893 4242 9.976511 GTACTATACTAACATAGTGCATTCCAA 57.023 33.333 6.12 0.00 41.26 3.53
3895 4244 6.867662 ATACTAACATAGTGCATTCCAAGC 57.132 37.500 0.00 0.00 39.81 4.01
3896 4245 4.588899 ACTAACATAGTGCATTCCAAGCA 58.411 39.130 0.00 0.00 37.69 3.91
3901 4250 2.282391 TGCATTCCAAGCACGCCT 60.282 55.556 0.00 0.00 37.02 5.52
3902 4251 1.902918 TGCATTCCAAGCACGCCTT 60.903 52.632 0.00 0.00 37.02 4.35
3912 4261 2.866750 CACGCCTTGCAACGCATA 59.133 55.556 18.47 0.00 38.76 3.14
3913 4262 1.429021 CACGCCTTGCAACGCATAT 59.571 52.632 18.47 2.82 38.76 1.78
3914 4263 0.179166 CACGCCTTGCAACGCATATT 60.179 50.000 18.47 0.00 38.76 1.28
3915 4264 1.063321 CACGCCTTGCAACGCATATTA 59.937 47.619 18.47 0.00 38.76 0.98
3916 4265 1.740585 ACGCCTTGCAACGCATATTAA 59.259 42.857 18.47 0.00 38.76 1.40
3917 4266 2.108700 CGCCTTGCAACGCATATTAAC 58.891 47.619 18.47 0.00 38.76 2.01
3918 4267 2.477021 CGCCTTGCAACGCATATTAACA 60.477 45.455 18.47 0.00 38.76 2.41
3919 4268 3.705604 GCCTTGCAACGCATATTAACAT 58.294 40.909 14.51 0.00 38.76 2.71
3920 4269 3.486841 GCCTTGCAACGCATATTAACATG 59.513 43.478 14.51 0.00 38.76 3.21
3921 4270 4.733230 GCCTTGCAACGCATATTAACATGA 60.733 41.667 14.51 0.00 38.76 3.07
3922 4271 5.339177 CCTTGCAACGCATATTAACATGAA 58.661 37.500 0.00 0.00 38.76 2.57
3923 4272 5.804473 CCTTGCAACGCATATTAACATGAAA 59.196 36.000 0.00 0.00 38.76 2.69
3924 4273 6.309980 CCTTGCAACGCATATTAACATGAAAA 59.690 34.615 0.00 0.00 38.76 2.29
3925 4274 7.010367 CCTTGCAACGCATATTAACATGAAAAT 59.990 33.333 0.00 0.94 38.76 1.82
3926 4275 8.917415 TTGCAACGCATATTAACATGAAAATA 57.083 26.923 0.00 3.37 38.76 1.40
3927 4276 9.526713 TTGCAACGCATATTAACATGAAAATAT 57.473 25.926 0.00 5.66 38.76 1.28
3928 4277 9.179552 TGCAACGCATATTAACATGAAAATATC 57.820 29.630 0.00 3.01 31.71 1.63
3929 4278 9.179552 GCAACGCATATTAACATGAAAATATCA 57.820 29.630 0.00 0.00 43.67 2.15
3931 4280 8.933438 ACGCATATTAACATGAAAATATCACG 57.067 30.769 20.20 20.20 41.93 4.35
3932 4281 8.015087 ACGCATATTAACATGAAAATATCACGG 58.985 33.333 22.57 12.75 41.93 4.94
3933 4282 7.007367 CGCATATTAACATGAAAATATCACGGC 59.993 37.037 0.00 7.10 41.93 5.68
3934 4283 8.023128 GCATATTAACATGAAAATATCACGGCT 58.977 33.333 0.00 0.00 41.93 5.52
3937 4286 5.424121 AACATGAAAATATCACGGCTAGC 57.576 39.130 6.04 6.04 41.93 3.42
3938 4287 4.708177 ACATGAAAATATCACGGCTAGCT 58.292 39.130 15.72 0.00 41.93 3.32
3939 4288 5.126067 ACATGAAAATATCACGGCTAGCTT 58.874 37.500 15.72 0.00 41.93 3.74
3940 4289 5.008019 ACATGAAAATATCACGGCTAGCTTG 59.992 40.000 15.72 12.28 41.93 4.01
3941 4290 3.312421 TGAAAATATCACGGCTAGCTTGC 59.688 43.478 15.72 12.01 31.50 4.01
3942 4291 2.620251 AATATCACGGCTAGCTTGCA 57.380 45.000 21.53 1.25 34.04 4.08
3943 4292 2.847327 ATATCACGGCTAGCTTGCAT 57.153 45.000 21.53 8.95 34.04 3.96
3944 4293 1.869774 TATCACGGCTAGCTTGCATG 58.130 50.000 21.53 17.68 34.04 4.06
3945 4294 0.107508 ATCACGGCTAGCTTGCATGT 60.108 50.000 21.53 15.65 34.04 3.21
3946 4295 0.321564 TCACGGCTAGCTTGCATGTT 60.322 50.000 21.53 0.00 34.04 2.71
3947 4296 1.066502 TCACGGCTAGCTTGCATGTTA 60.067 47.619 21.53 8.28 34.04 2.41
3948 4297 1.062587 CACGGCTAGCTTGCATGTTAC 59.937 52.381 21.53 2.33 34.04 2.50
3949 4298 1.066143 ACGGCTAGCTTGCATGTTACT 60.066 47.619 21.53 0.00 34.04 2.24
3950 4299 2.167693 ACGGCTAGCTTGCATGTTACTA 59.832 45.455 21.53 0.00 34.04 1.82
3951 4300 3.181465 ACGGCTAGCTTGCATGTTACTAT 60.181 43.478 21.53 0.00 34.04 2.12
3952 4301 4.038763 ACGGCTAGCTTGCATGTTACTATA 59.961 41.667 21.53 0.00 34.04 1.31
3953 4302 4.988540 CGGCTAGCTTGCATGTTACTATAA 59.011 41.667 21.53 0.00 34.04 0.98
3954 4303 5.107453 CGGCTAGCTTGCATGTTACTATAAC 60.107 44.000 21.53 0.00 34.04 1.89
3955 4304 5.758296 GGCTAGCTTGCATGTTACTATAACA 59.242 40.000 21.53 4.01 34.04 2.41
3956 4305 6.073548 GGCTAGCTTGCATGTTACTATAACAG 60.074 42.308 21.53 0.00 33.18 3.16
3957 4306 6.701841 GCTAGCTTGCATGTTACTATAACAGA 59.298 38.462 15.53 0.00 33.18 3.41
3958 4307 7.095857 GCTAGCTTGCATGTTACTATAACAGAG 60.096 40.741 15.53 4.25 33.18 3.35
3959 4308 6.878317 AGCTTGCATGTTACTATAACAGAGA 58.122 36.000 7.43 0.00 33.18 3.10
3960 4309 6.758886 AGCTTGCATGTTACTATAACAGAGAC 59.241 38.462 7.43 0.00 33.18 3.36
3961 4310 6.758886 GCTTGCATGTTACTATAACAGAGACT 59.241 38.462 7.43 0.00 33.18 3.24
3962 4311 7.254252 GCTTGCATGTTACTATAACAGAGACTG 60.254 40.741 7.43 0.00 37.52 3.51
3963 4312 6.573434 TGCATGTTACTATAACAGAGACTGG 58.427 40.000 7.43 0.00 35.51 4.00
3964 4313 5.986135 GCATGTTACTATAACAGAGACTGGG 59.014 44.000 7.43 0.00 35.51 4.45
3965 4314 6.407074 GCATGTTACTATAACAGAGACTGGGT 60.407 42.308 7.43 0.00 35.51 4.51
3966 4315 7.556844 CATGTTACTATAACAGAGACTGGGTT 58.443 38.462 7.43 0.00 35.51 4.11
3967 4316 8.692710 CATGTTACTATAACAGAGACTGGGTTA 58.307 37.037 7.43 0.00 35.51 2.85
3968 4317 8.289939 TGTTACTATAACAGAGACTGGGTTAG 57.710 38.462 0.00 0.00 35.51 2.34
3969 4318 8.111545 TGTTACTATAACAGAGACTGGGTTAGA 58.888 37.037 0.00 0.00 35.51 2.10
3970 4319 9.134055 GTTACTATAACAGAGACTGGGTTAGAT 57.866 37.037 0.00 0.00 35.51 1.98
3972 4321 8.927675 ACTATAACAGAGACTGGGTTAGATAG 57.072 38.462 0.00 0.00 35.51 2.08
3973 4322 7.945664 ACTATAACAGAGACTGGGTTAGATAGG 59.054 40.741 0.00 0.00 35.51 2.57
3974 4323 4.883021 ACAGAGACTGGGTTAGATAGGA 57.117 45.455 0.00 0.00 35.51 2.94
3975 4324 5.208294 ACAGAGACTGGGTTAGATAGGAA 57.792 43.478 0.00 0.00 35.51 3.36
3976 4325 5.205056 ACAGAGACTGGGTTAGATAGGAAG 58.795 45.833 0.00 0.00 35.51 3.46
3977 4326 4.038642 CAGAGACTGGGTTAGATAGGAAGC 59.961 50.000 0.00 0.00 0.00 3.86
3978 4327 2.959707 AGACTGGGTTAGATAGGAAGCG 59.040 50.000 0.00 0.00 0.00 4.68
3979 4328 2.694109 GACTGGGTTAGATAGGAAGCGT 59.306 50.000 0.00 0.00 0.00 5.07
3980 4329 2.431057 ACTGGGTTAGATAGGAAGCGTG 59.569 50.000 0.00 0.00 0.00 5.34
3981 4330 1.138266 TGGGTTAGATAGGAAGCGTGC 59.862 52.381 0.00 0.00 0.00 5.34
3982 4331 1.488527 GGTTAGATAGGAAGCGTGCG 58.511 55.000 0.00 0.00 0.00 5.34
3983 4332 1.488527 GTTAGATAGGAAGCGTGCGG 58.511 55.000 0.00 0.00 0.00 5.69
3984 4333 0.387929 TTAGATAGGAAGCGTGCGGG 59.612 55.000 0.00 0.00 0.00 6.13
3985 4334 0.466739 TAGATAGGAAGCGTGCGGGA 60.467 55.000 0.00 0.00 0.00 5.14
3986 4335 1.300233 GATAGGAAGCGTGCGGGAG 60.300 63.158 0.00 0.00 0.00 4.30
3987 4336 2.701163 GATAGGAAGCGTGCGGGAGG 62.701 65.000 0.00 0.00 0.00 4.30
3990 4339 4.821589 GAAGCGTGCGGGAGGGAG 62.822 72.222 0.00 0.00 0.00 4.30
3994 4343 3.461773 CGTGCGGGAGGGAGACAT 61.462 66.667 0.00 0.00 0.00 3.06
3995 4344 2.187946 GTGCGGGAGGGAGACATG 59.812 66.667 0.00 0.00 0.00 3.21
3996 4345 3.083349 TGCGGGAGGGAGACATGG 61.083 66.667 0.00 0.00 0.00 3.66
3997 4346 3.866582 GCGGGAGGGAGACATGGG 61.867 72.222 0.00 0.00 0.00 4.00
3998 4347 2.365635 CGGGAGGGAGACATGGGT 60.366 66.667 0.00 0.00 0.00 4.51
3999 4348 1.995626 CGGGAGGGAGACATGGGTT 60.996 63.158 0.00 0.00 0.00 4.11
4000 4349 1.562672 CGGGAGGGAGACATGGGTTT 61.563 60.000 0.00 0.00 0.00 3.27
4001 4350 0.034089 GGGAGGGAGACATGGGTTTG 60.034 60.000 0.00 0.00 0.00 2.93
4002 4351 0.034089 GGAGGGAGACATGGGTTTGG 60.034 60.000 0.00 0.00 0.00 3.28
4003 4352 0.698818 GAGGGAGACATGGGTTTGGT 59.301 55.000 0.00 0.00 0.00 3.67
4004 4353 1.075536 GAGGGAGACATGGGTTTGGTT 59.924 52.381 0.00 0.00 0.00 3.67
4005 4354 1.203050 AGGGAGACATGGGTTTGGTTG 60.203 52.381 0.00 0.00 0.00 3.77
4006 4355 1.256812 GGAGACATGGGTTTGGTTGG 58.743 55.000 0.00 0.00 0.00 3.77
4007 4356 1.256812 GAGACATGGGTTTGGTTGGG 58.743 55.000 0.00 0.00 0.00 4.12
4008 4357 0.560688 AGACATGGGTTTGGTTGGGT 59.439 50.000 0.00 0.00 0.00 4.51
4009 4358 0.678950 GACATGGGTTTGGTTGGGTG 59.321 55.000 0.00 0.00 0.00 4.61
4010 4359 0.263172 ACATGGGTTTGGTTGGGTGA 59.737 50.000 0.00 0.00 0.00 4.02
4011 4360 1.132881 ACATGGGTTTGGTTGGGTGAT 60.133 47.619 0.00 0.00 0.00 3.06
4012 4361 1.275856 CATGGGTTTGGTTGGGTGATG 59.724 52.381 0.00 0.00 0.00 3.07
4013 4362 0.470833 TGGGTTTGGTTGGGTGATGG 60.471 55.000 0.00 0.00 0.00 3.51
4014 4363 0.471022 GGGTTTGGTTGGGTGATGGT 60.471 55.000 0.00 0.00 0.00 3.55
4015 4364 1.419381 GGTTTGGTTGGGTGATGGTT 58.581 50.000 0.00 0.00 0.00 3.67
4016 4365 2.599677 GGTTTGGTTGGGTGATGGTTA 58.400 47.619 0.00 0.00 0.00 2.85
4017 4366 2.560981 GGTTTGGTTGGGTGATGGTTAG 59.439 50.000 0.00 0.00 0.00 2.34
4018 4367 3.492337 GTTTGGTTGGGTGATGGTTAGA 58.508 45.455 0.00 0.00 0.00 2.10
4019 4368 4.086457 GTTTGGTTGGGTGATGGTTAGAT 58.914 43.478 0.00 0.00 0.00 1.98
4020 4369 4.396357 TTGGTTGGGTGATGGTTAGATT 57.604 40.909 0.00 0.00 0.00 2.40
4021 4370 4.396357 TGGTTGGGTGATGGTTAGATTT 57.604 40.909 0.00 0.00 0.00 2.17
4022 4371 5.522315 TGGTTGGGTGATGGTTAGATTTA 57.478 39.130 0.00 0.00 0.00 1.40
4023 4372 5.258051 TGGTTGGGTGATGGTTAGATTTAC 58.742 41.667 0.00 0.00 0.00 2.01
4024 4373 5.014755 TGGTTGGGTGATGGTTAGATTTACT 59.985 40.000 0.00 0.00 0.00 2.24
4025 4374 5.949952 GGTTGGGTGATGGTTAGATTTACTT 59.050 40.000 0.00 0.00 0.00 2.24
4026 4375 7.114095 GGTTGGGTGATGGTTAGATTTACTTA 58.886 38.462 0.00 0.00 0.00 2.24
4027 4376 7.778382 GGTTGGGTGATGGTTAGATTTACTTAT 59.222 37.037 0.00 0.00 0.00 1.73
4028 4377 8.837389 GTTGGGTGATGGTTAGATTTACTTATC 58.163 37.037 0.00 0.00 0.00 1.75
4029 4378 8.096621 TGGGTGATGGTTAGATTTACTTATCA 57.903 34.615 0.00 0.00 0.00 2.15
4030 4379 8.723365 TGGGTGATGGTTAGATTTACTTATCAT 58.277 33.333 0.00 0.00 32.60 2.45
4051 4400 3.471354 CCAAAGGGTCATACGGGTC 57.529 57.895 0.00 0.00 0.00 4.46
4052 4401 0.461339 CCAAAGGGTCATACGGGTCG 60.461 60.000 0.00 0.00 0.00 4.79
4053 4402 0.248289 CAAAGGGTCATACGGGTCGT 59.752 55.000 0.00 0.00 44.35 4.34
4054 4403 1.477700 CAAAGGGTCATACGGGTCGTA 59.522 52.381 2.62 2.62 46.28 3.43
4055 4404 1.851304 AAGGGTCATACGGGTCGTAA 58.149 50.000 4.28 0.00 45.39 3.18
4056 4405 2.077687 AGGGTCATACGGGTCGTAAT 57.922 50.000 4.28 0.00 45.39 1.89
4057 4406 1.684983 AGGGTCATACGGGTCGTAATG 59.315 52.381 4.28 4.52 45.39 1.90
4058 4407 1.682854 GGGTCATACGGGTCGTAATGA 59.317 52.381 4.28 6.43 45.39 2.57
4059 4408 2.101249 GGGTCATACGGGTCGTAATGAA 59.899 50.000 4.28 0.00 45.39 2.57
4060 4409 3.243975 GGGTCATACGGGTCGTAATGAAT 60.244 47.826 4.28 0.00 45.39 2.57
4061 4410 3.739300 GGTCATACGGGTCGTAATGAATG 59.261 47.826 4.28 0.00 45.39 2.67
4062 4411 4.500205 GGTCATACGGGTCGTAATGAATGA 60.500 45.833 4.28 2.18 45.39 2.57
4063 4412 4.443394 GTCATACGGGTCGTAATGAATGAC 59.557 45.833 13.65 13.65 45.39 3.06
4070 4419 3.508762 GTCGTAATGAATGACCACGAGT 58.491 45.455 0.00 0.00 41.75 4.18
4071 4420 4.665212 GTCGTAATGAATGACCACGAGTA 58.335 43.478 0.00 0.00 41.75 2.59
4072 4421 5.279384 GTCGTAATGAATGACCACGAGTAT 58.721 41.667 0.00 0.00 41.75 2.12
4073 4422 6.432936 GTCGTAATGAATGACCACGAGTATA 58.567 40.000 0.00 0.00 41.75 1.47
4074 4423 7.082602 GTCGTAATGAATGACCACGAGTATAT 58.917 38.462 0.00 0.00 41.75 0.86
4075 4424 7.270793 GTCGTAATGAATGACCACGAGTATATC 59.729 40.741 0.00 0.00 41.75 1.63
4076 4425 7.174426 TCGTAATGAATGACCACGAGTATATCT 59.826 37.037 0.00 0.00 36.77 1.98
4077 4426 7.271438 CGTAATGAATGACCACGAGTATATCTG 59.729 40.741 0.00 0.00 34.66 2.90
4078 4427 5.453567 TGAATGACCACGAGTATATCTGG 57.546 43.478 0.00 0.00 34.31 3.86
4079 4428 3.944055 ATGACCACGAGTATATCTGGC 57.056 47.619 0.00 0.00 32.47 4.85
4080 4429 1.961394 TGACCACGAGTATATCTGGCC 59.039 52.381 0.00 0.00 32.47 5.36
4081 4430 1.961394 GACCACGAGTATATCTGGCCA 59.039 52.381 4.71 4.71 32.47 5.36
4082 4431 2.563179 GACCACGAGTATATCTGGCCAT 59.437 50.000 5.51 0.00 32.47 4.40
4083 4432 2.300152 ACCACGAGTATATCTGGCCATG 59.700 50.000 5.51 0.00 32.47 3.66
4084 4433 2.354103 CCACGAGTATATCTGGCCATGG 60.354 54.545 5.51 7.63 0.00 3.66
4085 4434 1.902508 ACGAGTATATCTGGCCATGGG 59.097 52.381 15.13 0.00 0.00 4.00
4127 4476 2.282180 GGCCTGAAAAGCCCACGA 60.282 61.111 0.00 0.00 45.16 4.35
4128 4477 2.626780 GGCCTGAAAAGCCCACGAC 61.627 63.158 0.00 0.00 45.16 4.34
4129 4478 1.896660 GCCTGAAAAGCCCACGACA 60.897 57.895 0.00 0.00 0.00 4.35
4130 4479 1.856265 GCCTGAAAAGCCCACGACAG 61.856 60.000 0.00 0.00 0.00 3.51
4131 4480 0.250295 CCTGAAAAGCCCACGACAGA 60.250 55.000 0.00 0.00 0.00 3.41
4132 4481 1.593196 CTGAAAAGCCCACGACAGAA 58.407 50.000 0.00 0.00 0.00 3.02
4133 4482 1.946768 CTGAAAAGCCCACGACAGAAA 59.053 47.619 0.00 0.00 0.00 2.52
4134 4483 2.357637 CTGAAAAGCCCACGACAGAAAA 59.642 45.455 0.00 0.00 0.00 2.29
4135 4484 2.098443 TGAAAAGCCCACGACAGAAAAC 59.902 45.455 0.00 0.00 0.00 2.43
4136 4485 2.052782 AAAGCCCACGACAGAAAACT 57.947 45.000 0.00 0.00 0.00 2.66
4137 4486 1.308998 AAGCCCACGACAGAAAACTG 58.691 50.000 0.00 0.00 0.00 3.16
4138 4487 0.468226 AGCCCACGACAGAAAACTGA 59.532 50.000 0.00 0.00 0.00 3.41
4139 4488 0.868406 GCCCACGACAGAAAACTGAG 59.132 55.000 0.00 0.00 0.00 3.35
4140 4489 1.512926 CCCACGACAGAAAACTGAGG 58.487 55.000 0.00 0.00 0.00 3.86
4141 4490 0.868406 CCACGACAGAAAACTGAGGC 59.132 55.000 0.00 0.00 0.00 4.70
4142 4491 0.868406 CACGACAGAAAACTGAGGCC 59.132 55.000 0.00 0.00 0.00 5.19
4143 4492 0.250338 ACGACAGAAAACTGAGGCCC 60.250 55.000 0.00 0.00 0.00 5.80
4144 4493 0.250295 CGACAGAAAACTGAGGCCCA 60.250 55.000 0.00 0.00 0.00 5.36
4162 4511 2.778717 GGCCCTCCCAAGCCCTAT 60.779 66.667 0.00 0.00 43.76 2.57
4163 4512 2.835049 GGCCCTCCCAAGCCCTATC 61.835 68.421 0.00 0.00 43.76 2.08
4164 4513 2.078665 GCCCTCCCAAGCCCTATCA 61.079 63.158 0.00 0.00 0.00 2.15
4165 4514 1.839894 CCCTCCCAAGCCCTATCAC 59.160 63.158 0.00 0.00 0.00 3.06
4166 4515 0.695803 CCCTCCCAAGCCCTATCACT 60.696 60.000 0.00 0.00 0.00 3.41
4167 4516 0.471617 CCTCCCAAGCCCTATCACTG 59.528 60.000 0.00 0.00 0.00 3.66
4168 4517 1.500474 CTCCCAAGCCCTATCACTGA 58.500 55.000 0.00 0.00 0.00 3.41
4169 4518 1.415659 CTCCCAAGCCCTATCACTGAG 59.584 57.143 0.00 0.00 0.00 3.35
4170 4519 0.179034 CCCAAGCCCTATCACTGAGC 60.179 60.000 0.00 0.00 0.00 4.26
4171 4520 0.179034 CCAAGCCCTATCACTGAGCC 60.179 60.000 0.00 0.00 0.00 4.70
4172 4521 0.835941 CAAGCCCTATCACTGAGCCT 59.164 55.000 0.00 0.00 0.00 4.58
4173 4522 2.042464 CAAGCCCTATCACTGAGCCTA 58.958 52.381 0.00 0.00 0.00 3.93
4174 4523 1.710816 AGCCCTATCACTGAGCCTAC 58.289 55.000 0.00 0.00 0.00 3.18
4175 4524 1.219213 AGCCCTATCACTGAGCCTACT 59.781 52.381 0.00 0.00 0.00 2.57
4176 4525 2.043227 GCCCTATCACTGAGCCTACTT 58.957 52.381 0.00 0.00 0.00 2.24
4177 4526 2.436173 GCCCTATCACTGAGCCTACTTT 59.564 50.000 0.00 0.00 0.00 2.66
4178 4527 3.118223 GCCCTATCACTGAGCCTACTTTT 60.118 47.826 0.00 0.00 0.00 2.27
4179 4528 4.698575 CCCTATCACTGAGCCTACTTTTC 58.301 47.826 0.00 0.00 0.00 2.29
4180 4529 4.162320 CCCTATCACTGAGCCTACTTTTCA 59.838 45.833 0.00 0.00 0.00 2.69
4181 4530 5.338381 CCCTATCACTGAGCCTACTTTTCAA 60.338 44.000 0.00 0.00 0.00 2.69
4182 4531 5.814705 CCTATCACTGAGCCTACTTTTCAAG 59.185 44.000 0.00 0.00 0.00 3.02
4183 4532 4.689612 TCACTGAGCCTACTTTTCAAGT 57.310 40.909 0.00 0.00 45.40 3.16
4184 4533 4.632153 TCACTGAGCCTACTTTTCAAGTC 58.368 43.478 0.00 0.00 41.77 3.01
4185 4534 3.748568 CACTGAGCCTACTTTTCAAGTCC 59.251 47.826 0.00 0.00 41.77 3.85
4186 4535 3.391296 ACTGAGCCTACTTTTCAAGTCCA 59.609 43.478 0.00 0.00 41.77 4.02
4187 4536 4.141482 ACTGAGCCTACTTTTCAAGTCCAA 60.141 41.667 0.00 0.00 41.77 3.53
4188 4537 4.389374 TGAGCCTACTTTTCAAGTCCAAG 58.611 43.478 0.00 0.00 41.77 3.61
4189 4538 3.149981 AGCCTACTTTTCAAGTCCAAGC 58.850 45.455 0.00 0.00 41.77 4.01
4190 4539 2.229062 GCCTACTTTTCAAGTCCAAGCC 59.771 50.000 0.00 0.00 41.77 4.35
4191 4540 2.820197 CCTACTTTTCAAGTCCAAGCCC 59.180 50.000 0.00 0.00 41.77 5.19
4192 4541 2.452600 ACTTTTCAAGTCCAAGCCCA 57.547 45.000 0.00 0.00 37.02 5.36
4193 4542 2.310538 ACTTTTCAAGTCCAAGCCCAG 58.689 47.619 0.00 0.00 37.02 4.45
4194 4543 1.000171 CTTTTCAAGTCCAAGCCCAGC 60.000 52.381 0.00 0.00 0.00 4.85
4195 4544 0.827507 TTTCAAGTCCAAGCCCAGCC 60.828 55.000 0.00 0.00 0.00 4.85
4196 4545 2.677875 CAAGTCCAAGCCCAGCCC 60.678 66.667 0.00 0.00 0.00 5.19
4197 4546 3.185203 AAGTCCAAGCCCAGCCCA 61.185 61.111 0.00 0.00 0.00 5.36
4198 4547 2.551413 AAGTCCAAGCCCAGCCCAT 61.551 57.895 0.00 0.00 0.00 4.00
4199 4548 2.440980 GTCCAAGCCCAGCCCATC 60.441 66.667 0.00 0.00 0.00 3.51
4200 4549 2.614969 TCCAAGCCCAGCCCATCT 60.615 61.111 0.00 0.00 0.00 2.90
4201 4550 2.441532 CCAAGCCCAGCCCATCTG 60.442 66.667 0.00 0.00 42.49 2.90
4202 4551 2.679092 CAAGCCCAGCCCATCTGA 59.321 61.111 0.00 0.00 45.72 3.27
4203 4552 1.229359 CAAGCCCAGCCCATCTGAT 59.771 57.895 0.00 0.00 45.72 2.90
4204 4553 0.475475 CAAGCCCAGCCCATCTGATA 59.525 55.000 0.00 0.00 45.72 2.15
4205 4554 1.133699 CAAGCCCAGCCCATCTGATAA 60.134 52.381 0.00 0.00 45.72 1.75
4206 4555 1.225373 AGCCCAGCCCATCTGATAAA 58.775 50.000 0.00 0.00 45.72 1.40
4207 4556 1.570501 AGCCCAGCCCATCTGATAAAA 59.429 47.619 0.00 0.00 45.72 1.52
4208 4557 2.024080 AGCCCAGCCCATCTGATAAAAA 60.024 45.455 0.00 0.00 45.72 1.94
4209 4558 2.363359 GCCCAGCCCATCTGATAAAAAG 59.637 50.000 0.00 0.00 45.72 2.27
4210 4559 2.363359 CCCAGCCCATCTGATAAAAAGC 59.637 50.000 0.00 0.00 45.72 3.51
4211 4560 2.363359 CCAGCCCATCTGATAAAAAGCC 59.637 50.000 0.00 0.00 45.72 4.35
4212 4561 2.363359 CAGCCCATCTGATAAAAAGCCC 59.637 50.000 0.00 0.00 45.72 5.19
4213 4562 2.245806 AGCCCATCTGATAAAAAGCCCT 59.754 45.455 0.00 0.00 0.00 5.19
4214 4563 3.463329 AGCCCATCTGATAAAAAGCCCTA 59.537 43.478 0.00 0.00 0.00 3.53
4215 4564 4.079212 AGCCCATCTGATAAAAAGCCCTAA 60.079 41.667 0.00 0.00 0.00 2.69
4216 4565 4.649218 GCCCATCTGATAAAAAGCCCTAAA 59.351 41.667 0.00 0.00 0.00 1.85
4217 4566 5.128663 GCCCATCTGATAAAAAGCCCTAAAA 59.871 40.000 0.00 0.00 0.00 1.52
4218 4567 6.351796 GCCCATCTGATAAAAAGCCCTAAAAA 60.352 38.462 0.00 0.00 0.00 1.94
4219 4568 7.267857 CCCATCTGATAAAAAGCCCTAAAAAG 58.732 38.462 0.00 0.00 0.00 2.27
4220 4569 6.758416 CCATCTGATAAAAAGCCCTAAAAAGC 59.242 38.462 0.00 0.00 0.00 3.51
4221 4570 6.280855 TCTGATAAAAAGCCCTAAAAAGCC 57.719 37.500 0.00 0.00 0.00 4.35
4222 4571 5.186992 TCTGATAAAAAGCCCTAAAAAGCCC 59.813 40.000 0.00 0.00 0.00 5.19
4223 4572 5.090845 TGATAAAAAGCCCTAAAAAGCCCT 58.909 37.500 0.00 0.00 0.00 5.19
4224 4573 5.546110 TGATAAAAAGCCCTAAAAAGCCCTT 59.454 36.000 0.00 0.00 0.00 3.95
4225 4574 6.726764 TGATAAAAAGCCCTAAAAAGCCCTTA 59.273 34.615 0.00 0.00 0.00 2.69
4226 4575 5.483685 AAAAAGCCCTAAAAAGCCCTTAG 57.516 39.130 0.00 0.00 0.00 2.18
4227 4576 2.828661 AGCCCTAAAAAGCCCTTAGG 57.171 50.000 8.49 8.49 43.49 2.69
4258 4607 3.630289 GGCCGAGCCTCTTCCTTA 58.370 61.111 7.58 0.00 46.69 2.69
4259 4608 1.905512 GGCCGAGCCTCTTCCTTAA 59.094 57.895 7.58 0.00 46.69 1.85
4260 4609 0.252197 GGCCGAGCCTCTTCCTTAAA 59.748 55.000 7.58 0.00 46.69 1.52
4261 4610 1.339727 GGCCGAGCCTCTTCCTTAAAA 60.340 52.381 7.58 0.00 46.69 1.52
4262 4611 2.644676 GCCGAGCCTCTTCCTTAAAAT 58.355 47.619 0.00 0.00 0.00 1.82
4263 4612 2.356069 GCCGAGCCTCTTCCTTAAAATG 59.644 50.000 0.00 0.00 0.00 2.32
4264 4613 3.873910 CCGAGCCTCTTCCTTAAAATGA 58.126 45.455 0.00 0.00 0.00 2.57
4265 4614 3.623510 CCGAGCCTCTTCCTTAAAATGAC 59.376 47.826 0.00 0.00 0.00 3.06
4266 4615 4.253685 CGAGCCTCTTCCTTAAAATGACA 58.746 43.478 0.00 0.00 0.00 3.58
4267 4616 4.695455 CGAGCCTCTTCCTTAAAATGACAA 59.305 41.667 0.00 0.00 0.00 3.18
4268 4617 5.355350 CGAGCCTCTTCCTTAAAATGACAAT 59.645 40.000 0.00 0.00 0.00 2.71
4269 4618 6.538742 CGAGCCTCTTCCTTAAAATGACAATA 59.461 38.462 0.00 0.00 0.00 1.90
4270 4619 7.227512 CGAGCCTCTTCCTTAAAATGACAATAT 59.772 37.037 0.00 0.00 0.00 1.28
4271 4620 8.230472 AGCCTCTTCCTTAAAATGACAATATG 57.770 34.615 0.00 0.00 0.00 1.78
4272 4621 6.920210 GCCTCTTCCTTAAAATGACAATATGC 59.080 38.462 0.00 0.00 0.00 3.14
4273 4622 7.428826 CCTCTTCCTTAAAATGACAATATGCC 58.571 38.462 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 6.331572 TCATATGGCTCAAATAGGGGAAAGTA 59.668 38.462 2.13 0.00 0.00 2.24
123 124 7.639113 TCTGTCTTAACAAGGAAACAAATGT 57.361 32.000 0.00 0.00 34.24 2.71
136 137 9.897744 GATTGAAACATCATTTCTGTCTTAACA 57.102 29.630 1.48 0.00 0.00 2.41
141 142 8.027189 CACATGATTGAAACATCATTTCTGTCT 58.973 33.333 0.00 0.00 35.52 3.41
150 151 6.072008 CCTTACCACACATGATTGAAACATCA 60.072 38.462 0.00 0.00 0.00 3.07
255 258 3.454042 GCGAAAAATGCCATTTGGTTC 57.546 42.857 2.91 4.20 37.57 3.62
274 277 1.557832 TGTGTTATGGTACTCTGGGGC 59.442 52.381 0.00 0.00 0.00 5.80
278 281 4.753107 ACGGTTTTGTGTTATGGTACTCTG 59.247 41.667 0.00 0.00 0.00 3.35
279 282 4.964593 ACGGTTTTGTGTTATGGTACTCT 58.035 39.130 0.00 0.00 0.00 3.24
280 283 6.973229 ATACGGTTTTGTGTTATGGTACTC 57.027 37.500 0.00 0.00 0.00 2.59
281 284 7.229106 ACAAATACGGTTTTGTGTTATGGTACT 59.771 33.333 14.71 0.00 45.55 2.73
282 285 7.361894 ACAAATACGGTTTTGTGTTATGGTAC 58.638 34.615 14.71 0.00 45.55 3.34
283 286 7.507733 ACAAATACGGTTTTGTGTTATGGTA 57.492 32.000 14.71 0.00 45.55 3.25
284 287 6.394025 ACAAATACGGTTTTGTGTTATGGT 57.606 33.333 14.71 0.00 45.55 3.55
286 289 8.783999 TGTAACAAATACGGTTTTGTGTTATG 57.216 30.769 15.78 1.40 46.33 1.90
325 560 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
362 597 1.269448 CTGGGCGCACATGTACTTTTT 59.731 47.619 15.47 0.00 0.00 1.94
363 598 0.881118 CTGGGCGCACATGTACTTTT 59.119 50.000 15.47 0.00 0.00 2.27
364 599 0.960364 CCTGGGCGCACATGTACTTT 60.960 55.000 15.47 0.00 0.00 2.66
365 600 1.377202 CCTGGGCGCACATGTACTT 60.377 57.895 15.47 0.00 0.00 2.24
366 601 2.124507 AACCTGGGCGCACATGTACT 62.125 55.000 21.14 3.56 0.00 2.73
377 612 0.541764 TTGACCAATCCAACCTGGGC 60.542 55.000 0.00 0.00 41.60 5.36
387 622 9.463443 GTTATTAAACTGGCATATTGACCAATC 57.537 33.333 0.00 0.00 34.96 2.67
404 639 7.892609 ACAGGATCTTTTGTGGGTTATTAAAC 58.107 34.615 0.00 0.00 34.66 2.01
405 640 7.726291 TGACAGGATCTTTTGTGGGTTATTAAA 59.274 33.333 0.00 0.00 0.00 1.52
494 731 9.184523 TGAACAAGAAAGATAAAGACTTCCAAA 57.815 29.630 0.00 0.00 0.00 3.28
495 732 8.746052 TGAACAAGAAAGATAAAGACTTCCAA 57.254 30.769 0.00 0.00 0.00 3.53
496 733 8.746052 TTGAACAAGAAAGATAAAGACTTCCA 57.254 30.769 0.00 0.00 0.00 3.53
515 752 9.535878 AGACAAACAAACTAAACTTTTTGAACA 57.464 25.926 1.25 0.00 36.41 3.18
559 799 4.035091 TGAGGAAATGTTGACTTTCACACG 59.965 41.667 0.00 0.00 34.90 4.49
788 1030 1.823169 TAAAGAACTCGGCGGCACCT 61.823 55.000 10.53 0.00 35.61 4.00
789 1031 0.952010 TTAAAGAACTCGGCGGCACC 60.952 55.000 10.53 0.00 0.00 5.01
938 1190 1.002773 ACTGGCGTAAAGGTAACAGGG 59.997 52.381 0.00 0.00 41.41 4.45
962 1214 2.284921 ACTCCTGCTGGCTGGCTA 60.285 61.111 12.65 0.00 35.38 3.93
1824 2080 0.742505 GGTCGTGGATGATGTCGGTA 59.257 55.000 0.00 0.00 0.00 4.02
2409 2716 3.125376 GCCCAGGCGGATGAGGAAT 62.125 63.158 0.00 0.00 0.00 3.01
3278 3591 4.218478 GTACGAATGCACGGCGGC 62.218 66.667 13.24 12.77 37.61 6.53
3279 3592 2.798501 CTGTACGAATGCACGGCGG 61.799 63.158 13.24 0.66 37.61 6.13
3280 3593 2.695055 CTGTACGAATGCACGGCG 59.305 61.111 4.80 4.80 37.61 6.46
3281 3594 2.399611 GCTGTACGAATGCACGGC 59.600 61.111 1.59 0.00 39.67 5.68
3333 3646 7.400439 TCATGTCATCATCTTCTTCTTTCCTT 58.600 34.615 0.00 0.00 31.15 3.36
3339 3652 7.991460 TGCTTAATCATGTCATCATCTTCTTCT 59.009 33.333 0.00 0.00 31.15 2.85
3368 3681 2.229062 ACCGATAGATGATAGTGTGGCG 59.771 50.000 0.00 0.00 39.76 5.69
3395 3711 9.243637 GTCAAAAGCACATCTGTTTAACAATTA 57.756 29.630 0.00 0.00 0.00 1.40
3432 3749 9.579932 AAAATCACAAGGAGAAGAAAAGTAGAT 57.420 29.630 0.00 0.00 0.00 1.98
3434 3751 7.592903 GCAAAATCACAAGGAGAAGAAAAGTAG 59.407 37.037 0.00 0.00 0.00 2.57
3508 3832 5.416639 ACACTACGAAAAAGGAACAAAAGGT 59.583 36.000 0.00 0.00 0.00 3.50
3510 3834 6.804783 ACAACACTACGAAAAAGGAACAAAAG 59.195 34.615 0.00 0.00 0.00 2.27
3526 3850 3.800506 AGCACTACGTTTCACAACACTAC 59.199 43.478 0.00 0.00 32.54 2.73
3534 3858 4.663636 AAATAGCAGCACTACGTTTCAC 57.336 40.909 0.00 0.00 32.32 3.18
3535 3859 5.008217 ACAAAAATAGCAGCACTACGTTTCA 59.992 36.000 0.00 0.00 32.32 2.69
3536 3860 5.449304 ACAAAAATAGCAGCACTACGTTTC 58.551 37.500 0.00 0.00 32.32 2.78
3538 3862 5.432885 AACAAAAATAGCAGCACTACGTT 57.567 34.783 0.00 0.00 32.32 3.99
3619 3963 6.655003 AGAGATCGACCACAACATAACAAAAT 59.345 34.615 0.00 0.00 0.00 1.82
3627 3971 4.499865 CGGATAAGAGATCGACCACAACAT 60.500 45.833 0.00 0.00 0.00 2.71
3658 4005 2.233676 CCCCACCAAATAAAGTGAAGCC 59.766 50.000 0.00 0.00 36.01 4.35
3679 4026 2.031683 CGAGTGAAGTTCCAAACCACAC 59.968 50.000 0.00 0.00 37.83 3.82
3727 4074 4.137543 AGGAACGTTCTTCTTTTCTGCAT 58.862 39.130 26.32 0.00 0.00 3.96
3788 4137 2.033299 ACATTTGTGCTCTGTTGTTCGG 59.967 45.455 0.00 0.00 0.00 4.30
3849 4198 5.733620 AGTACCATCTGAAGTTCGGTTAA 57.266 39.130 11.47 0.00 0.00 2.01
3867 4216 9.976511 TTGGAATGCACTATGTTAGTATAGTAC 57.023 33.333 0.00 0.00 40.86 2.73
3870 4219 7.657354 TGCTTGGAATGCACTATGTTAGTATAG 59.343 37.037 0.00 0.00 42.52 1.31
3871 4220 7.505258 TGCTTGGAATGCACTATGTTAGTATA 58.495 34.615 0.00 0.00 42.52 1.47
3884 4233 1.902918 AAGGCGTGCTTGGAATGCA 60.903 52.632 0.00 0.00 45.42 3.96
3885 4234 1.444895 CAAGGCGTGCTTGGAATGC 60.445 57.895 0.00 0.00 37.54 3.56
3886 4235 4.874534 CAAGGCGTGCTTGGAATG 57.125 55.556 0.00 0.00 0.00 2.67
3895 4244 0.179166 AATATGCGTTGCAAGGCGTG 60.179 50.000 36.53 12.32 43.62 5.34
3896 4245 1.374560 TAATATGCGTTGCAAGGCGT 58.625 45.000 33.57 33.57 43.62 5.68
3897 4246 2.108700 GTTAATATGCGTTGCAAGGCG 58.891 47.619 31.85 19.93 43.62 5.52
3898 4247 3.143807 TGTTAATATGCGTTGCAAGGC 57.856 42.857 31.65 31.65 43.62 4.35
3899 4248 4.919206 TCATGTTAATATGCGTTGCAAGG 58.081 39.130 14.70 14.70 43.62 3.61
3900 4249 6.867799 TTTCATGTTAATATGCGTTGCAAG 57.132 33.333 0.00 0.00 43.62 4.01
3901 4250 7.824704 ATTTTCATGTTAATATGCGTTGCAA 57.175 28.000 7.29 0.00 43.62 4.08
3902 4251 9.179552 GATATTTTCATGTTAATATGCGTTGCA 57.820 29.630 15.14 0.00 44.86 4.08
3903 4252 9.179552 TGATATTTTCATGTTAATATGCGTTGC 57.820 29.630 15.14 5.48 29.47 4.17
3905 4254 9.381027 CGTGATATTTTCATGTTAATATGCGTT 57.619 29.630 15.14 0.00 36.72 4.84
3906 4255 8.015087 CCGTGATATTTTCATGTTAATATGCGT 58.985 33.333 15.14 0.00 39.36 5.24
3907 4256 7.007367 GCCGTGATATTTTCATGTTAATATGCG 59.993 37.037 15.14 16.24 39.36 4.73
3908 4257 8.023128 AGCCGTGATATTTTCATGTTAATATGC 58.977 33.333 15.14 12.74 39.36 3.14
3911 4260 8.717821 GCTAGCCGTGATATTTTCATGTTAATA 58.282 33.333 2.29 0.00 39.36 0.98
3912 4261 7.445402 AGCTAGCCGTGATATTTTCATGTTAAT 59.555 33.333 12.13 0.00 39.36 1.40
3913 4262 6.765989 AGCTAGCCGTGATATTTTCATGTTAA 59.234 34.615 12.13 0.00 39.36 2.01
3914 4263 6.288294 AGCTAGCCGTGATATTTTCATGTTA 58.712 36.000 12.13 0.00 39.36 2.41
3915 4264 5.126067 AGCTAGCCGTGATATTTTCATGTT 58.874 37.500 12.13 0.00 39.36 2.71
3916 4265 4.708177 AGCTAGCCGTGATATTTTCATGT 58.292 39.130 12.13 0.00 39.36 3.21
3917 4266 5.446709 CAAGCTAGCCGTGATATTTTCATG 58.553 41.667 12.13 0.00 40.49 3.07
3918 4267 4.023707 GCAAGCTAGCCGTGATATTTTCAT 60.024 41.667 17.88 0.00 36.54 2.57
3919 4268 3.312421 GCAAGCTAGCCGTGATATTTTCA 59.688 43.478 17.88 0.00 0.00 2.69
3920 4269 3.312421 TGCAAGCTAGCCGTGATATTTTC 59.688 43.478 17.88 0.00 0.00 2.29
3921 4270 3.278574 TGCAAGCTAGCCGTGATATTTT 58.721 40.909 17.88 0.00 0.00 1.82
3922 4271 2.917933 TGCAAGCTAGCCGTGATATTT 58.082 42.857 17.88 0.00 0.00 1.40
3923 4272 2.620251 TGCAAGCTAGCCGTGATATT 57.380 45.000 17.88 0.00 0.00 1.28
3924 4273 2.224378 ACATGCAAGCTAGCCGTGATAT 60.224 45.455 17.88 9.37 0.00 1.63
3925 4274 1.138859 ACATGCAAGCTAGCCGTGATA 59.861 47.619 17.88 7.72 0.00 2.15
3926 4275 0.107508 ACATGCAAGCTAGCCGTGAT 60.108 50.000 17.88 7.39 0.00 3.06
3927 4276 0.321564 AACATGCAAGCTAGCCGTGA 60.322 50.000 17.88 5.67 0.00 4.35
3928 4277 1.062587 GTAACATGCAAGCTAGCCGTG 59.937 52.381 12.13 11.41 0.00 4.94
3929 4278 1.066143 AGTAACATGCAAGCTAGCCGT 60.066 47.619 12.13 0.00 0.00 5.68
3930 4279 1.656652 AGTAACATGCAAGCTAGCCG 58.343 50.000 12.13 3.98 0.00 5.52
3931 4280 5.758296 TGTTATAGTAACATGCAAGCTAGCC 59.242 40.000 12.13 0.00 0.00 3.93
3932 4281 6.701841 TCTGTTATAGTAACATGCAAGCTAGC 59.298 38.462 6.62 6.62 0.00 3.42
3933 4282 8.138074 TCTCTGTTATAGTAACATGCAAGCTAG 58.862 37.037 0.00 0.00 0.00 3.42
3934 4283 7.921214 GTCTCTGTTATAGTAACATGCAAGCTA 59.079 37.037 0.00 0.00 0.00 3.32
3935 4284 6.758886 GTCTCTGTTATAGTAACATGCAAGCT 59.241 38.462 0.00 0.00 0.00 3.74
3936 4285 6.758886 AGTCTCTGTTATAGTAACATGCAAGC 59.241 38.462 0.00 0.00 0.00 4.01
3937 4286 7.223582 CCAGTCTCTGTTATAGTAACATGCAAG 59.776 40.741 0.00 0.00 0.00 4.01
3938 4287 7.041721 CCAGTCTCTGTTATAGTAACATGCAA 58.958 38.462 0.00 0.00 0.00 4.08
3939 4288 6.406961 CCCAGTCTCTGTTATAGTAACATGCA 60.407 42.308 3.29 0.00 0.00 3.96
3940 4289 5.986135 CCCAGTCTCTGTTATAGTAACATGC 59.014 44.000 3.29 0.00 0.00 4.06
3941 4290 7.113658 ACCCAGTCTCTGTTATAGTAACATG 57.886 40.000 3.29 0.00 0.00 3.21
3942 4291 7.735326 AACCCAGTCTCTGTTATAGTAACAT 57.265 36.000 3.29 0.00 0.00 2.71
3943 4292 8.111545 TCTAACCCAGTCTCTGTTATAGTAACA 58.888 37.037 2.91 2.91 0.00 2.41
3944 4293 8.517062 TCTAACCCAGTCTCTGTTATAGTAAC 57.483 38.462 0.00 0.00 0.00 2.50
3947 4296 7.945664 CCTATCTAACCCAGTCTCTGTTATAGT 59.054 40.741 0.00 0.00 0.00 2.12
3948 4297 8.164733 TCCTATCTAACCCAGTCTCTGTTATAG 58.835 40.741 0.00 0.00 0.00 1.31
3949 4298 8.053776 TCCTATCTAACCCAGTCTCTGTTATA 57.946 38.462 0.00 0.00 0.00 0.98
3950 4299 6.923670 TCCTATCTAACCCAGTCTCTGTTAT 58.076 40.000 0.00 0.00 0.00 1.89
3951 4300 6.337185 TCCTATCTAACCCAGTCTCTGTTA 57.663 41.667 0.00 0.00 0.00 2.41
3952 4301 5.208294 TCCTATCTAACCCAGTCTCTGTT 57.792 43.478 0.00 0.00 0.00 3.16
3953 4302 4.883021 TCCTATCTAACCCAGTCTCTGT 57.117 45.455 0.00 0.00 0.00 3.41
3954 4303 4.038642 GCTTCCTATCTAACCCAGTCTCTG 59.961 50.000 0.00 0.00 0.00 3.35
3955 4304 4.219919 GCTTCCTATCTAACCCAGTCTCT 58.780 47.826 0.00 0.00 0.00 3.10
3956 4305 3.004944 CGCTTCCTATCTAACCCAGTCTC 59.995 52.174 0.00 0.00 0.00 3.36
3957 4306 2.959707 CGCTTCCTATCTAACCCAGTCT 59.040 50.000 0.00 0.00 0.00 3.24
3958 4307 2.694109 ACGCTTCCTATCTAACCCAGTC 59.306 50.000 0.00 0.00 0.00 3.51
3959 4308 2.431057 CACGCTTCCTATCTAACCCAGT 59.569 50.000 0.00 0.00 0.00 4.00
3960 4309 2.803492 GCACGCTTCCTATCTAACCCAG 60.803 54.545 0.00 0.00 0.00 4.45
3961 4310 1.138266 GCACGCTTCCTATCTAACCCA 59.862 52.381 0.00 0.00 0.00 4.51
3962 4311 1.867166 GCACGCTTCCTATCTAACCC 58.133 55.000 0.00 0.00 0.00 4.11
3963 4312 1.488527 CGCACGCTTCCTATCTAACC 58.511 55.000 0.00 0.00 0.00 2.85
3964 4313 1.488527 CCGCACGCTTCCTATCTAAC 58.511 55.000 0.00 0.00 0.00 2.34
3965 4314 0.387929 CCCGCACGCTTCCTATCTAA 59.612 55.000 0.00 0.00 0.00 2.10
3966 4315 0.466739 TCCCGCACGCTTCCTATCTA 60.467 55.000 0.00 0.00 0.00 1.98
3967 4316 1.739338 CTCCCGCACGCTTCCTATCT 61.739 60.000 0.00 0.00 0.00 1.98
3968 4317 1.300233 CTCCCGCACGCTTCCTATC 60.300 63.158 0.00 0.00 0.00 2.08
3969 4318 2.797278 CCTCCCGCACGCTTCCTAT 61.797 63.158 0.00 0.00 0.00 2.57
3970 4319 3.458163 CCTCCCGCACGCTTCCTA 61.458 66.667 0.00 0.00 0.00 2.94
3973 4322 4.821589 CTCCCTCCCGCACGCTTC 62.822 72.222 0.00 0.00 0.00 3.86
3977 4326 3.461773 ATGTCTCCCTCCCGCACG 61.462 66.667 0.00 0.00 0.00 5.34
3978 4327 2.187946 CATGTCTCCCTCCCGCAC 59.812 66.667 0.00 0.00 0.00 5.34
3979 4328 3.083349 CCATGTCTCCCTCCCGCA 61.083 66.667 0.00 0.00 0.00 5.69
3980 4329 3.866582 CCCATGTCTCCCTCCCGC 61.867 72.222 0.00 0.00 0.00 6.13
3981 4330 1.562672 AAACCCATGTCTCCCTCCCG 61.563 60.000 0.00 0.00 0.00 5.14
3982 4331 0.034089 CAAACCCATGTCTCCCTCCC 60.034 60.000 0.00 0.00 0.00 4.30
3983 4332 0.034089 CCAAACCCATGTCTCCCTCC 60.034 60.000 0.00 0.00 0.00 4.30
3984 4333 0.698818 ACCAAACCCATGTCTCCCTC 59.301 55.000 0.00 0.00 0.00 4.30
3985 4334 1.158007 AACCAAACCCATGTCTCCCT 58.842 50.000 0.00 0.00 0.00 4.20
3986 4335 1.256812 CAACCAAACCCATGTCTCCC 58.743 55.000 0.00 0.00 0.00 4.30
3987 4336 1.256812 CCAACCAAACCCATGTCTCC 58.743 55.000 0.00 0.00 0.00 3.71
3988 4337 1.256812 CCCAACCAAACCCATGTCTC 58.743 55.000 0.00 0.00 0.00 3.36
3989 4338 0.560688 ACCCAACCAAACCCATGTCT 59.439 50.000 0.00 0.00 0.00 3.41
3990 4339 0.678950 CACCCAACCAAACCCATGTC 59.321 55.000 0.00 0.00 0.00 3.06
3991 4340 0.263172 TCACCCAACCAAACCCATGT 59.737 50.000 0.00 0.00 0.00 3.21
3992 4341 1.275856 CATCACCCAACCAAACCCATG 59.724 52.381 0.00 0.00 0.00 3.66
3993 4342 1.643310 CATCACCCAACCAAACCCAT 58.357 50.000 0.00 0.00 0.00 4.00
3994 4343 0.470833 CCATCACCCAACCAAACCCA 60.471 55.000 0.00 0.00 0.00 4.51
3995 4344 0.471022 ACCATCACCCAACCAAACCC 60.471 55.000 0.00 0.00 0.00 4.11
3996 4345 1.419381 AACCATCACCCAACCAAACC 58.581 50.000 0.00 0.00 0.00 3.27
3997 4346 3.492337 TCTAACCATCACCCAACCAAAC 58.508 45.455 0.00 0.00 0.00 2.93
3998 4347 3.885976 TCTAACCATCACCCAACCAAA 57.114 42.857 0.00 0.00 0.00 3.28
3999 4348 4.396357 AATCTAACCATCACCCAACCAA 57.604 40.909 0.00 0.00 0.00 3.67
4000 4349 4.396357 AAATCTAACCATCACCCAACCA 57.604 40.909 0.00 0.00 0.00 3.67
4001 4350 5.506708 AGTAAATCTAACCATCACCCAACC 58.493 41.667 0.00 0.00 0.00 3.77
4002 4351 8.747538 ATAAGTAAATCTAACCATCACCCAAC 57.252 34.615 0.00 0.00 0.00 3.77
4003 4352 8.553153 TGATAAGTAAATCTAACCATCACCCAA 58.447 33.333 0.00 0.00 0.00 4.12
4004 4353 8.096621 TGATAAGTAAATCTAACCATCACCCA 57.903 34.615 0.00 0.00 0.00 4.51
4033 4382 0.461339 CGACCCGTATGACCCTTTGG 60.461 60.000 0.00 0.00 37.80 3.28
4034 4383 0.248289 ACGACCCGTATGACCCTTTG 59.752 55.000 0.00 0.00 38.73 2.77
4035 4384 1.851304 TACGACCCGTATGACCCTTT 58.149 50.000 0.00 0.00 41.54 3.11
4036 4385 1.851304 TTACGACCCGTATGACCCTT 58.149 50.000 0.00 0.00 41.97 3.95
4037 4386 1.684983 CATTACGACCCGTATGACCCT 59.315 52.381 0.00 0.00 41.97 4.34
4038 4387 1.682854 TCATTACGACCCGTATGACCC 59.317 52.381 0.00 0.00 41.97 4.46
4039 4388 3.441496 TTCATTACGACCCGTATGACC 57.559 47.619 0.00 0.00 41.97 4.02
4040 4389 4.443394 GTCATTCATTACGACCCGTATGAC 59.557 45.833 13.11 13.11 41.97 3.06
4041 4390 4.500205 GGTCATTCATTACGACCCGTATGA 60.500 45.833 0.00 4.42 42.87 2.15
4042 4391 3.739300 GGTCATTCATTACGACCCGTATG 59.261 47.826 0.00 2.42 42.87 2.39
4043 4392 3.986277 GGTCATTCATTACGACCCGTAT 58.014 45.455 0.00 0.00 42.87 3.06
4044 4393 3.441496 GGTCATTCATTACGACCCGTA 57.559 47.619 0.00 0.00 42.87 4.02
4045 4394 2.304751 GGTCATTCATTACGACCCGT 57.695 50.000 0.00 0.00 42.87 5.28
4049 4398 3.508762 ACTCGTGGTCATTCATTACGAC 58.491 45.455 0.00 0.00 38.65 4.34
4050 4399 3.861276 ACTCGTGGTCATTCATTACGA 57.139 42.857 0.00 0.00 40.91 3.43
4051 4400 7.271438 CAGATATACTCGTGGTCATTCATTACG 59.729 40.741 0.00 0.00 36.20 3.18
4052 4401 7.542477 CCAGATATACTCGTGGTCATTCATTAC 59.458 40.741 0.00 0.00 0.00 1.89
4053 4402 7.602753 CCAGATATACTCGTGGTCATTCATTA 58.397 38.462 0.00 0.00 0.00 1.90
4054 4403 6.459066 CCAGATATACTCGTGGTCATTCATT 58.541 40.000 0.00 0.00 0.00 2.57
4055 4404 5.567623 GCCAGATATACTCGTGGTCATTCAT 60.568 44.000 0.00 0.00 32.20 2.57
4056 4405 4.262036 GCCAGATATACTCGTGGTCATTCA 60.262 45.833 0.00 0.00 32.20 2.57
4057 4406 4.238514 GCCAGATATACTCGTGGTCATTC 58.761 47.826 0.00 0.00 32.20 2.67
4058 4407 3.006967 GGCCAGATATACTCGTGGTCATT 59.993 47.826 0.00 0.00 34.63 2.57
4059 4408 2.563179 GGCCAGATATACTCGTGGTCAT 59.437 50.000 0.00 0.00 34.63 3.06
4060 4409 1.961394 GGCCAGATATACTCGTGGTCA 59.039 52.381 0.00 0.00 34.63 4.02
4061 4410 1.961394 TGGCCAGATATACTCGTGGTC 59.039 52.381 0.00 0.00 35.10 4.02
4062 4411 2.082140 TGGCCAGATATACTCGTGGT 57.918 50.000 0.00 0.00 32.20 4.16
4063 4412 2.354103 CCATGGCCAGATATACTCGTGG 60.354 54.545 13.05 5.87 0.00 4.94
4064 4413 2.354103 CCCATGGCCAGATATACTCGTG 60.354 54.545 13.05 0.00 0.00 4.35
4065 4414 1.902508 CCCATGGCCAGATATACTCGT 59.097 52.381 13.05 0.00 0.00 4.18
4066 4415 1.406069 GCCCATGGCCAGATATACTCG 60.406 57.143 13.05 0.00 44.06 4.18
4067 4416 2.409948 GCCCATGGCCAGATATACTC 57.590 55.000 13.05 0.00 44.06 2.59
4111 4460 1.856265 CTGTCGTGGGCTTTTCAGGC 61.856 60.000 0.00 0.00 45.20 4.85
4112 4461 0.250295 TCTGTCGTGGGCTTTTCAGG 60.250 55.000 0.00 0.00 0.00 3.86
4113 4462 1.593196 TTCTGTCGTGGGCTTTTCAG 58.407 50.000 0.00 0.00 0.00 3.02
4114 4463 2.045561 TTTCTGTCGTGGGCTTTTCA 57.954 45.000 0.00 0.00 0.00 2.69
4115 4464 2.357952 AGTTTTCTGTCGTGGGCTTTTC 59.642 45.455 0.00 0.00 0.00 2.29
4116 4465 2.099098 CAGTTTTCTGTCGTGGGCTTTT 59.901 45.455 0.00 0.00 42.48 2.27
4117 4466 1.676006 CAGTTTTCTGTCGTGGGCTTT 59.324 47.619 0.00 0.00 42.48 3.51
4118 4467 1.134220 TCAGTTTTCTGTCGTGGGCTT 60.134 47.619 0.00 0.00 46.98 4.35
4119 4468 0.468226 TCAGTTTTCTGTCGTGGGCT 59.532 50.000 0.00 0.00 46.98 5.19
4120 4469 0.868406 CTCAGTTTTCTGTCGTGGGC 59.132 55.000 0.00 0.00 46.98 5.36
4121 4470 1.512926 CCTCAGTTTTCTGTCGTGGG 58.487 55.000 0.00 0.00 46.98 4.61
4122 4471 0.868406 GCCTCAGTTTTCTGTCGTGG 59.132 55.000 0.00 0.00 46.98 4.94
4123 4472 0.868406 GGCCTCAGTTTTCTGTCGTG 59.132 55.000 0.00 0.00 46.98 4.35
4124 4473 0.250338 GGGCCTCAGTTTTCTGTCGT 60.250 55.000 0.84 0.00 46.98 4.34
4125 4474 0.250295 TGGGCCTCAGTTTTCTGTCG 60.250 55.000 4.53 0.00 46.98 4.35
4126 4475 1.528129 CTGGGCCTCAGTTTTCTGTC 58.472 55.000 4.53 0.00 46.98 3.51
4127 4476 0.111253 CCTGGGCCTCAGTTTTCTGT 59.889 55.000 16.96 0.00 46.98 3.41
4128 4477 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
4129 4478 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
4130 4479 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
4146 4495 2.078665 TGATAGGGCTTGGGAGGGC 61.079 63.158 0.00 0.00 0.00 5.19
4147 4496 0.695803 AGTGATAGGGCTTGGGAGGG 60.696 60.000 0.00 0.00 0.00 4.30
4148 4497 0.471617 CAGTGATAGGGCTTGGGAGG 59.528 60.000 0.00 0.00 0.00 4.30
4149 4498 1.415659 CTCAGTGATAGGGCTTGGGAG 59.584 57.143 0.00 0.00 0.00 4.30
4150 4499 1.500474 CTCAGTGATAGGGCTTGGGA 58.500 55.000 0.00 0.00 0.00 4.37
4151 4500 0.179034 GCTCAGTGATAGGGCTTGGG 60.179 60.000 0.00 0.00 0.00 4.12
4152 4501 0.179034 GGCTCAGTGATAGGGCTTGG 60.179 60.000 0.00 0.00 0.00 3.61
4153 4502 0.835941 AGGCTCAGTGATAGGGCTTG 59.164 55.000 0.00 0.00 0.00 4.01
4154 4503 2.043227 GTAGGCTCAGTGATAGGGCTT 58.957 52.381 11.46 2.58 36.11 4.35
4155 4504 1.219213 AGTAGGCTCAGTGATAGGGCT 59.781 52.381 11.05 11.05 38.17 5.19
4156 4505 1.710816 AGTAGGCTCAGTGATAGGGC 58.289 55.000 0.00 0.00 0.00 5.19
4157 4506 4.162320 TGAAAAGTAGGCTCAGTGATAGGG 59.838 45.833 0.00 0.00 0.00 3.53
4158 4507 5.344743 TGAAAAGTAGGCTCAGTGATAGG 57.655 43.478 0.00 0.00 0.00 2.57
4159 4508 6.900568 CTTGAAAAGTAGGCTCAGTGATAG 57.099 41.667 0.00 0.00 39.70 2.08
4175 4524 1.039856 GCTGGGCTTGGACTTGAAAA 58.960 50.000 0.00 0.00 0.00 2.29
4176 4525 0.827507 GGCTGGGCTTGGACTTGAAA 60.828 55.000 0.00 0.00 0.00 2.69
4177 4526 1.228552 GGCTGGGCTTGGACTTGAA 60.229 57.895 0.00 0.00 0.00 2.69
4178 4527 2.436109 GGCTGGGCTTGGACTTGA 59.564 61.111 0.00 0.00 0.00 3.02
4179 4528 2.677875 GGGCTGGGCTTGGACTTG 60.678 66.667 0.00 0.00 0.00 3.16
4180 4529 2.505364 GATGGGCTGGGCTTGGACTT 62.505 60.000 0.00 0.00 0.00 3.01
4181 4530 2.943265 ATGGGCTGGGCTTGGACT 60.943 61.111 0.00 0.00 0.00 3.85
4182 4531 2.440980 GATGGGCTGGGCTTGGAC 60.441 66.667 0.00 0.00 0.00 4.02
4183 4532 2.614969 AGATGGGCTGGGCTTGGA 60.615 61.111 0.00 0.00 0.00 3.53
4184 4533 2.294170 ATCAGATGGGCTGGGCTTGG 62.294 60.000 0.00 0.00 44.98 3.61
4185 4534 0.475475 TATCAGATGGGCTGGGCTTG 59.525 55.000 0.00 0.00 44.98 4.01
4186 4535 1.225373 TTATCAGATGGGCTGGGCTT 58.775 50.000 0.00 0.00 44.98 4.35
4187 4536 1.225373 TTTATCAGATGGGCTGGGCT 58.775 50.000 0.00 0.00 44.98 5.19
4188 4537 2.071778 TTTTATCAGATGGGCTGGGC 57.928 50.000 0.00 0.00 44.98 5.36
4189 4538 2.363359 GCTTTTTATCAGATGGGCTGGG 59.637 50.000 0.00 0.00 44.98 4.45
4190 4539 2.363359 GGCTTTTTATCAGATGGGCTGG 59.637 50.000 0.00 0.00 44.98 4.85
4191 4540 2.363359 GGGCTTTTTATCAGATGGGCTG 59.637 50.000 0.00 0.00 46.31 4.85
4192 4541 2.245806 AGGGCTTTTTATCAGATGGGCT 59.754 45.455 0.00 0.00 0.00 5.19
4193 4542 2.670939 AGGGCTTTTTATCAGATGGGC 58.329 47.619 0.00 0.00 0.00 5.36
4194 4543 6.790232 TTTTAGGGCTTTTTATCAGATGGG 57.210 37.500 0.00 0.00 0.00 4.00
4195 4544 6.758416 GCTTTTTAGGGCTTTTTATCAGATGG 59.242 38.462 0.00 0.00 0.00 3.51
4196 4545 6.758416 GGCTTTTTAGGGCTTTTTATCAGATG 59.242 38.462 0.00 0.00 0.00 2.90
4197 4546 6.127054 GGGCTTTTTAGGGCTTTTTATCAGAT 60.127 38.462 0.00 0.00 0.00 2.90
4198 4547 5.186992 GGGCTTTTTAGGGCTTTTTATCAGA 59.813 40.000 0.00 0.00 0.00 3.27
4199 4548 5.187772 AGGGCTTTTTAGGGCTTTTTATCAG 59.812 40.000 0.00 0.00 0.00 2.90
4200 4549 5.090845 AGGGCTTTTTAGGGCTTTTTATCA 58.909 37.500 0.00 0.00 0.00 2.15
4201 4550 5.677319 AGGGCTTTTTAGGGCTTTTTATC 57.323 39.130 0.00 0.00 0.00 1.75
4202 4551 6.156256 CCTAAGGGCTTTTTAGGGCTTTTTAT 59.844 38.462 12.28 0.00 42.20 1.40
4203 4552 5.482526 CCTAAGGGCTTTTTAGGGCTTTTTA 59.517 40.000 12.28 0.00 42.20 1.52
4204 4553 4.286032 CCTAAGGGCTTTTTAGGGCTTTTT 59.714 41.667 12.28 0.00 42.20 1.94
4205 4554 3.838317 CCTAAGGGCTTTTTAGGGCTTTT 59.162 43.478 12.28 0.00 42.20 2.27
4206 4555 3.441101 CCTAAGGGCTTTTTAGGGCTTT 58.559 45.455 12.28 0.00 42.20 3.51
4207 4556 3.101643 CCTAAGGGCTTTTTAGGGCTT 57.898 47.619 12.28 0.00 42.20 4.35
4208 4557 2.828661 CCTAAGGGCTTTTTAGGGCT 57.171 50.000 12.28 0.00 42.20 5.19
4242 4591 2.109425 TTTTAAGGAAGAGGCTCGGC 57.891 50.000 9.22 4.97 0.00 5.54
4243 4592 3.623510 GTCATTTTAAGGAAGAGGCTCGG 59.376 47.826 9.22 0.00 0.00 4.63
4244 4593 4.253685 TGTCATTTTAAGGAAGAGGCTCG 58.746 43.478 9.22 0.00 0.00 5.03
4245 4594 6.765915 ATTGTCATTTTAAGGAAGAGGCTC 57.234 37.500 6.34 6.34 0.00 4.70
4246 4595 7.201857 GCATATTGTCATTTTAAGGAAGAGGCT 60.202 37.037 0.00 0.00 0.00 4.58
4247 4596 6.920210 GCATATTGTCATTTTAAGGAAGAGGC 59.080 38.462 0.00 0.00 0.00 4.70
4248 4597 7.428826 GGCATATTGTCATTTTAAGGAAGAGG 58.571 38.462 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.