Multiple sequence alignment - TraesCS3B01G386500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G386500 chr3B 100.000 3161 0 0 1 3161 606658572 606655412 0.000000e+00 5838.0
1 TraesCS3B01G386500 chr3B 84.848 198 20 6 560 752 606657818 606658010 1.160000e-44 191.0
2 TraesCS3B01G386500 chr3B 100.000 83 0 0 3013 3095 479988669 479988587 1.520000e-33 154.0
3 TraesCS3B01G386500 chr3B 94.845 97 3 2 633 728 606657845 606657940 1.960000e-32 150.0
4 TraesCS3B01G386500 chr3A 95.276 1990 76 9 633 2605 601412990 601411002 0.000000e+00 3138.0
5 TraesCS3B01G386500 chr3A 93.333 645 29 6 1 631 601413590 601412946 0.000000e+00 941.0
6 TraesCS3B01G386500 chr3A 88.068 352 35 7 965 1310 573140989 573140639 8.160000e-111 411.0
7 TraesCS3B01G386500 chr3A 88.430 121 7 6 638 752 601412895 601413014 4.250000e-29 139.0
8 TraesCS3B01G386500 chr3A 87.288 118 5 3 2604 2721 601410841 601410734 3.310000e-25 126.0
9 TraesCS3B01G386500 chr3A 95.455 44 2 0 2807 2850 601410645 601410602 1.570000e-08 71.3
10 TraesCS3B01G386500 chr3D 95.922 1741 58 5 633 2362 459224439 459222701 0.000000e+00 2809.0
11 TraesCS3B01G386500 chr3D 95.268 317 14 1 1 317 459224996 459224681 4.710000e-138 501.0
12 TraesCS3B01G386500 chr3D 94.406 286 15 1 347 631 459224680 459224395 3.740000e-119 438.0
13 TraesCS3B01G386500 chr3D 93.525 139 5 2 3014 3148 459221630 459221492 1.490000e-48 204.0
14 TraesCS3B01G386500 chr3D 100.000 81 0 0 3013 3093 3302239 3302159 1.960000e-32 150.0
15 TraesCS3B01G386500 chr3D 97.674 86 2 0 3013 3098 368957545 368957460 7.060000e-32 148.0
16 TraesCS3B01G386500 chr7A 87.884 1593 160 26 780 2351 540880988 540879408 0.000000e+00 1842.0
17 TraesCS3B01G386500 chr7A 100.000 84 0 0 3013 3096 618084945 618084862 4.220000e-34 156.0
18 TraesCS3B01G386500 chr7D 87.287 1581 161 23 810 2369 459397624 459399185 0.000000e+00 1770.0
19 TraesCS3B01G386500 chr7B 86.406 1611 172 24 759 2351 481309266 481310847 0.000000e+00 1718.0
20 TraesCS3B01G386500 chr1D 93.314 344 22 1 965 1308 191512246 191511904 1.010000e-139 507.0
21 TraesCS3B01G386500 chr1D 92.571 350 21 5 965 1310 176953991 176954339 6.090000e-137 497.0
22 TraesCS3B01G386500 chr1D 95.370 108 5 0 1462 1569 191510189 191510082 4.190000e-39 172.0
23 TraesCS3B01G386500 chr1D 93.750 112 6 1 1455 1566 176954337 176954447 1.950000e-37 167.0
24 TraesCS3B01G386500 chr1D 97.619 84 2 0 3012 3095 37213514 37213431 9.140000e-31 145.0
25 TraesCS3B01G386500 chr4D 88.393 336 37 2 970 1303 202613106 202612771 1.370000e-108 403.0
26 TraesCS3B01G386500 chr6B 93.043 115 7 1 1455 1569 211960823 211960710 1.950000e-37 167.0
27 TraesCS3B01G386500 chr2A 92.727 110 6 2 1458 1566 309695683 309695791 1.170000e-34 158.0
28 TraesCS3B01G386500 chr5D 100.000 81 0 0 3013 3093 521846311 521846231 1.960000e-32 150.0
29 TraesCS3B01G386500 chr5D 97.701 87 1 1 3009 3094 517436399 517436485 7.060000e-32 148.0
30 TraesCS3B01G386500 chr1A 100.000 81 0 0 3012 3092 553707479 553707399 1.960000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G386500 chr3B 606655412 606658572 3160 True 5838.000 5838 100.00000 1 3161 1 chr3B.!!$R2 3160
1 TraesCS3B01G386500 chr3A 601410602 601413590 2988 True 1069.075 3138 92.83800 1 2850 4 chr3A.!!$R2 2849
2 TraesCS3B01G386500 chr3D 459221492 459224996 3504 True 988.000 2809 94.78025 1 3148 4 chr3D.!!$R3 3147
3 TraesCS3B01G386500 chr7A 540879408 540880988 1580 True 1842.000 1842 87.88400 780 2351 1 chr7A.!!$R1 1571
4 TraesCS3B01G386500 chr7D 459397624 459399185 1561 False 1770.000 1770 87.28700 810 2369 1 chr7D.!!$F1 1559
5 TraesCS3B01G386500 chr7B 481309266 481310847 1581 False 1718.000 1718 86.40600 759 2351 1 chr7B.!!$F1 1592
6 TraesCS3B01G386500 chr1D 191510082 191512246 2164 True 339.500 507 94.34200 965 1569 2 chr1D.!!$R2 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.944386 TTCAGCTGAGTTTTGTCGCC 59.056 50.000 17.43 0.0 0.00 5.54 F
389 391 1.595882 CTCTGAGGTGGTGAGCCTG 59.404 63.158 0.00 0.0 36.29 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 3414 0.250513 CTACACCAAGTGGGCTCTCC 59.749 60.000 1.69 0.0 42.05 3.71 R
2250 3860 2.365293 ACATCCAGGTTTCAACAAAGGC 59.635 45.455 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 6.186420 TGTTGCTCTCTTTATGGGCATATA 57.814 37.500 0.00 0.00 32.87 0.86
130 131 1.330521 TGTTCAGCTGAGTTTTGTCGC 59.669 47.619 17.43 1.26 0.00 5.19
131 132 0.944386 TTCAGCTGAGTTTTGTCGCC 59.056 50.000 17.43 0.00 0.00 5.54
359 360 8.677871 TTTGAATGTCGATTCATGATGAAAAG 57.322 30.769 12.36 9.13 45.91 2.27
383 385 4.363990 ACGCGCTCTGAGGTGGTG 62.364 66.667 5.73 0.00 0.00 4.17
389 391 1.595882 CTCTGAGGTGGTGAGCCTG 59.404 63.158 0.00 0.00 36.29 4.85
401 403 1.882623 GTGAGCCTGGGCATTATTAGC 59.117 52.381 14.39 0.00 44.88 3.09
528 543 3.326836 TGTATGTGTCTTGATGGCGAA 57.673 42.857 0.00 0.00 0.00 4.70
602 617 7.010552 GCTTTAGTGTGGTACATTATGAGTGAG 59.989 40.741 0.00 0.00 44.52 3.51
603 618 7.712204 TTAGTGTGGTACATTATGAGTGAGA 57.288 36.000 0.00 0.00 44.52 3.27
604 619 6.798427 AGTGTGGTACATTATGAGTGAGAT 57.202 37.500 0.00 0.00 44.52 2.75
605 620 7.898014 AGTGTGGTACATTATGAGTGAGATA 57.102 36.000 0.00 0.00 44.52 1.98
606 621 7.946207 AGTGTGGTACATTATGAGTGAGATAG 58.054 38.462 0.00 0.00 44.52 2.08
607 622 7.561722 AGTGTGGTACATTATGAGTGAGATAGT 59.438 37.037 0.00 0.00 44.52 2.12
608 623 8.198109 GTGTGGTACATTATGAGTGAGATAGTT 58.802 37.037 0.00 0.00 44.52 2.24
609 624 8.197439 TGTGGTACATTATGAGTGAGATAGTTG 58.803 37.037 0.00 0.00 44.52 3.16
610 625 8.414003 GTGGTACATTATGAGTGAGATAGTTGA 58.586 37.037 0.00 0.00 44.52 3.18
611 626 8.977412 TGGTACATTATGAGTGAGATAGTTGAA 58.023 33.333 0.00 0.00 0.00 2.69
612 627 9.988815 GGTACATTATGAGTGAGATAGTTGAAT 57.011 33.333 0.00 0.00 0.00 2.57
615 630 9.896645 ACATTATGAGTGAGATAGTTGAATGTT 57.103 29.630 0.00 0.00 31.57 2.71
617 632 8.722480 TTATGAGTGAGATAGTTGAATGTTGG 57.278 34.615 0.00 0.00 0.00 3.77
618 633 6.358974 TGAGTGAGATAGTTGAATGTTGGA 57.641 37.500 0.00 0.00 0.00 3.53
619 634 6.950842 TGAGTGAGATAGTTGAATGTTGGAT 58.049 36.000 0.00 0.00 0.00 3.41
620 635 8.078060 TGAGTGAGATAGTTGAATGTTGGATA 57.922 34.615 0.00 0.00 0.00 2.59
621 636 8.200120 TGAGTGAGATAGTTGAATGTTGGATAG 58.800 37.037 0.00 0.00 0.00 2.08
622 637 6.989169 AGTGAGATAGTTGAATGTTGGATAGC 59.011 38.462 0.00 0.00 0.00 2.97
623 638 5.985530 TGAGATAGTTGAATGTTGGATAGCG 59.014 40.000 0.00 0.00 0.00 4.26
624 639 5.918608 AGATAGTTGAATGTTGGATAGCGT 58.081 37.500 0.00 0.00 0.00 5.07
625 640 6.349300 AGATAGTTGAATGTTGGATAGCGTT 58.651 36.000 0.00 0.00 0.00 4.84
626 641 6.823689 AGATAGTTGAATGTTGGATAGCGTTT 59.176 34.615 0.00 0.00 0.00 3.60
627 642 5.705609 AGTTGAATGTTGGATAGCGTTTT 57.294 34.783 0.00 0.00 0.00 2.43
628 643 6.811253 AGTTGAATGTTGGATAGCGTTTTA 57.189 33.333 0.00 0.00 0.00 1.52
629 644 7.209471 AGTTGAATGTTGGATAGCGTTTTAA 57.791 32.000 0.00 0.00 0.00 1.52
630 645 7.826690 AGTTGAATGTTGGATAGCGTTTTAAT 58.173 30.769 0.00 0.00 0.00 1.40
631 646 7.968405 AGTTGAATGTTGGATAGCGTTTTAATC 59.032 33.333 0.00 0.00 0.00 1.75
632 647 6.482835 TGAATGTTGGATAGCGTTTTAATCG 58.517 36.000 0.00 0.00 0.00 3.34
633 648 4.868450 TGTTGGATAGCGTTTTAATCGG 57.132 40.909 0.00 0.00 0.00 4.18
634 649 4.255301 TGTTGGATAGCGTTTTAATCGGT 58.745 39.130 5.50 5.50 41.68 4.69
635 650 5.417811 TGTTGGATAGCGTTTTAATCGGTA 58.582 37.500 9.26 9.26 43.39 4.02
636 651 5.291614 TGTTGGATAGCGTTTTAATCGGTAC 59.708 40.000 9.07 1.27 42.38 3.34
637 652 5.008619 TGGATAGCGTTTTAATCGGTACA 57.991 39.130 9.07 2.71 42.38 2.90
638 653 5.603596 TGGATAGCGTTTTAATCGGTACAT 58.396 37.500 9.07 0.00 42.38 2.29
639 654 6.050432 TGGATAGCGTTTTAATCGGTACATT 58.950 36.000 9.07 0.00 42.38 2.71
640 655 7.208777 TGGATAGCGTTTTAATCGGTACATTA 58.791 34.615 9.07 0.00 42.38 1.90
641 656 7.874016 TGGATAGCGTTTTAATCGGTACATTAT 59.126 33.333 9.07 0.00 42.38 1.28
642 657 8.166706 GGATAGCGTTTTAATCGGTACATTATG 58.833 37.037 9.07 0.00 42.38 1.90
643 658 8.821147 ATAGCGTTTTAATCGGTACATTATGA 57.179 30.769 9.07 0.00 42.38 2.15
644 659 7.173863 AGCGTTTTAATCGGTACATTATGAG 57.826 36.000 0.00 0.00 37.26 2.90
645 660 6.759827 AGCGTTTTAATCGGTACATTATGAGT 59.240 34.615 0.00 0.00 37.26 3.41
646 661 6.844279 GCGTTTTAATCGGTACATTATGAGTG 59.156 38.462 0.00 0.00 0.00 3.51
647 662 7.254185 GCGTTTTAATCGGTACATTATGAGTGA 60.254 37.037 0.00 0.00 0.00 3.41
665 680 8.991783 ATGAGTGAGATAATTGAATGTTGGAT 57.008 30.769 0.00 0.00 0.00 3.41
681 696 8.460831 AATGTTGGATAGCGTTTTAATTTGAC 57.539 30.769 0.00 0.00 0.00 3.18
684 699 6.671614 TGGATAGCGTTTTAATTTGACGAT 57.328 33.333 10.77 7.68 38.99 3.73
685 700 7.079182 TGGATAGCGTTTTAATTTGACGATT 57.921 32.000 10.77 2.97 38.99 3.34
764 792 7.117236 CGTAAAAGGTTAGCAGTGAATAGTGAA 59.883 37.037 0.00 0.00 0.00 3.18
905 939 6.326375 ACGTGTCTTTCAATTTGTTTTGCTA 58.674 32.000 0.00 0.00 0.00 3.49
906 940 6.978080 ACGTGTCTTTCAATTTGTTTTGCTAT 59.022 30.769 0.00 0.00 0.00 2.97
1056 1091 3.241701 AGTTGTTGAAAAGCGTGTGTTG 58.758 40.909 0.00 0.00 0.00 3.33
1872 3468 5.104024 TGGTTTTCAAGGACTACCAACCTTA 60.104 40.000 0.00 0.00 43.54 2.69
2120 3716 3.339093 GTGCCCCTACTGCCCCTT 61.339 66.667 0.00 0.00 0.00 3.95
2219 3828 0.792640 ACATGCTTCTGTTTCGCTCG 59.207 50.000 0.00 0.00 0.00 5.03
2225 3834 1.192534 CTTCTGTTTCGCTCGTCCAAC 59.807 52.381 0.00 0.00 0.00 3.77
2250 3860 7.094377 ACTGTTTGCCTGTATTATAACCTTGTG 60.094 37.037 0.00 0.00 0.00 3.33
2256 3866 6.680378 GCCTGTATTATAACCTTGTGCCTTTG 60.680 42.308 0.00 0.00 0.00 2.77
2326 3942 8.567285 AAACTATCTCTTGGGAATAAACACAG 57.433 34.615 0.00 0.00 0.00 3.66
2335 3951 7.338449 TCTTGGGAATAAACACAGTAATAAGCC 59.662 37.037 0.00 0.00 0.00 4.35
2356 4002 1.552578 TTCGCTACTGGCTTGGTCTA 58.447 50.000 0.00 0.00 39.13 2.59
2393 4039 2.658285 CTGCTGCTATGGGGAATTTCA 58.342 47.619 0.00 0.00 0.00 2.69
2439 4087 1.708341 ACTGCATGTTTTTCTGCCCT 58.292 45.000 0.00 0.00 37.59 5.19
2440 4088 1.342174 ACTGCATGTTTTTCTGCCCTG 59.658 47.619 0.00 0.00 37.59 4.45
2494 4638 2.291282 ACTCTTGTGGTTGGTTTGTGGA 60.291 45.455 0.00 0.00 0.00 4.02
2560 4704 3.865164 CCAAAAACAGAAAGGCTTGTGAC 59.135 43.478 14.91 2.23 30.46 3.67
2567 4711 0.537371 AAAGGCTTGTGACGGGGAAG 60.537 55.000 0.00 0.00 0.00 3.46
2576 4720 1.221021 GACGGGGAAGGCTGTAAGG 59.779 63.158 0.00 0.00 0.00 2.69
2660 4971 6.599638 AGCAACTCTTTTCTACAAACTCAACT 59.400 34.615 0.00 0.00 0.00 3.16
2665 4976 9.699703 ACTCTTTTCTACAAACTCAACTAGATC 57.300 33.333 0.00 0.00 0.00 2.75
2669 4980 7.891183 TTCTACAAACTCAACTAGATCAAGC 57.109 36.000 0.00 0.00 0.00 4.01
2670 4981 6.398918 TCTACAAACTCAACTAGATCAAGCC 58.601 40.000 0.00 0.00 0.00 4.35
2672 4983 5.564550 ACAAACTCAACTAGATCAAGCCAT 58.435 37.500 0.00 0.00 0.00 4.40
2673 4984 6.006449 ACAAACTCAACTAGATCAAGCCATT 58.994 36.000 0.00 0.00 0.00 3.16
2675 4986 6.506500 AACTCAACTAGATCAAGCCATTTG 57.493 37.500 0.00 0.00 38.17 2.32
2676 4987 5.564550 ACTCAACTAGATCAAGCCATTTGT 58.435 37.500 0.00 0.00 38.01 2.83
2692 5003 3.428413 TTTGTAGCACCTAAACCTCCC 57.572 47.619 0.00 0.00 0.00 4.30
2746 5117 0.676184 TCGTGAGAGCTGTCTTGCTT 59.324 50.000 12.66 0.00 44.17 3.91
2750 5121 2.763933 TGAGAGCTGTCTTGCTTTCAG 58.236 47.619 12.66 0.00 45.25 3.02
2751 5122 2.103771 TGAGAGCTGTCTTGCTTTCAGT 59.896 45.455 12.66 0.00 45.25 3.41
2752 5123 2.479656 GAGAGCTGTCTTGCTTTCAGTG 59.520 50.000 3.06 0.00 44.17 3.66
2753 5124 2.103771 AGAGCTGTCTTGCTTTCAGTGA 59.896 45.455 0.00 0.00 44.17 3.41
2754 5125 3.072944 GAGCTGTCTTGCTTTCAGTGAT 58.927 45.455 0.00 0.00 44.17 3.06
2755 5126 2.812591 AGCTGTCTTGCTTTCAGTGATG 59.187 45.455 0.00 0.00 40.93 3.07
2756 5127 2.667724 GCTGTCTTGCTTTCAGTGATGC 60.668 50.000 10.57 10.57 0.00 3.91
2757 5128 1.881973 TGTCTTGCTTTCAGTGATGCC 59.118 47.619 13.73 2.43 0.00 4.40
2758 5129 1.200948 GTCTTGCTTTCAGTGATGCCC 59.799 52.381 13.73 0.00 0.00 5.36
2759 5130 0.529378 CTTGCTTTCAGTGATGCCCC 59.471 55.000 13.73 0.00 0.00 5.80
2760 5131 1.243342 TTGCTTTCAGTGATGCCCCG 61.243 55.000 13.73 0.00 0.00 5.73
2761 5132 1.377202 GCTTTCAGTGATGCCCCGA 60.377 57.895 0.00 0.00 0.00 5.14
2762 5133 1.372087 GCTTTCAGTGATGCCCCGAG 61.372 60.000 0.00 0.00 0.00 4.63
2763 5134 0.250234 CTTTCAGTGATGCCCCGAGA 59.750 55.000 0.00 0.00 0.00 4.04
2764 5135 0.690192 TTTCAGTGATGCCCCGAGAA 59.310 50.000 0.00 0.00 0.00 2.87
2765 5136 0.250234 TTCAGTGATGCCCCGAGAAG 59.750 55.000 0.00 0.00 0.00 2.85
2766 5137 1.817099 CAGTGATGCCCCGAGAAGC 60.817 63.158 0.00 0.00 0.00 3.86
2767 5138 1.992277 AGTGATGCCCCGAGAAGCT 60.992 57.895 0.00 0.00 0.00 3.74
2768 5139 1.522580 GTGATGCCCCGAGAAGCTC 60.523 63.158 0.00 0.00 0.00 4.09
2769 5140 1.989508 TGATGCCCCGAGAAGCTCA 60.990 57.895 0.00 0.00 0.00 4.26
2770 5141 1.227497 GATGCCCCGAGAAGCTCAG 60.227 63.158 0.00 0.00 0.00 3.35
2771 5142 1.680522 GATGCCCCGAGAAGCTCAGA 61.681 60.000 0.00 0.00 0.00 3.27
2772 5143 1.684386 ATGCCCCGAGAAGCTCAGAG 61.684 60.000 0.00 0.00 0.00 3.35
2773 5144 2.355193 GCCCCGAGAAGCTCAGAGT 61.355 63.158 0.00 0.00 0.00 3.24
2774 5145 1.893919 GCCCCGAGAAGCTCAGAGTT 61.894 60.000 0.00 0.00 0.00 3.01
2775 5146 0.108424 CCCCGAGAAGCTCAGAGTTG 60.108 60.000 0.00 0.00 0.00 3.16
2776 5147 0.891373 CCCGAGAAGCTCAGAGTTGA 59.109 55.000 0.00 0.00 0.00 3.18
2777 5148 1.480137 CCCGAGAAGCTCAGAGTTGAT 59.520 52.381 0.00 0.00 31.68 2.57
2778 5149 2.538437 CCGAGAAGCTCAGAGTTGATG 58.462 52.381 0.00 0.00 31.68 3.07
2779 5150 2.165234 CCGAGAAGCTCAGAGTTGATGA 59.835 50.000 0.00 0.00 31.68 2.92
2780 5151 3.367806 CCGAGAAGCTCAGAGTTGATGAA 60.368 47.826 0.00 0.00 31.68 2.57
2781 5152 3.611986 CGAGAAGCTCAGAGTTGATGAAC 59.388 47.826 0.00 0.00 31.68 3.18
2782 5153 4.617995 CGAGAAGCTCAGAGTTGATGAACT 60.618 45.833 0.00 0.00 45.59 3.01
2783 5154 4.567971 AGAAGCTCAGAGTTGATGAACTG 58.432 43.478 1.00 0.00 42.80 3.16
2803 5174 3.691575 TGGAGTCTACTGAGAGAGTTGG 58.308 50.000 0.00 0.00 35.96 3.77
2804 5175 3.330998 TGGAGTCTACTGAGAGAGTTGGA 59.669 47.826 0.00 0.00 35.96 3.53
2813 5184 2.035961 TGAGAGAGTTGGAGTTGTTCGG 59.964 50.000 0.00 0.00 0.00 4.30
2851 5222 2.213499 CGCTAGGTGAAATGATGGACC 58.787 52.381 0.00 0.00 0.00 4.46
2854 5225 3.622206 GCTAGGTGAAATGATGGACCACA 60.622 47.826 0.00 0.00 0.00 4.17
2855 5226 3.744940 AGGTGAAATGATGGACCACAT 57.255 42.857 0.00 0.00 44.18 3.21
2865 5236 0.611896 TGGACCACATCTGCTCTCGA 60.612 55.000 0.00 0.00 0.00 4.04
2891 5272 1.605058 ATCAGCCTCTACACGCGGTT 61.605 55.000 12.47 0.00 0.00 4.44
2895 5276 0.101759 GCCTCTACACGCGGTTCATA 59.898 55.000 12.47 0.00 0.00 2.15
2905 5286 3.932289 GGTTCATACCGATCGGCG 58.068 61.111 33.62 21.69 39.32 6.46
2906 5287 2.308039 GGTTCATACCGATCGGCGC 61.308 63.158 33.62 16.20 39.32 6.53
2908 5289 0.944311 GTTCATACCGATCGGCGCAT 60.944 55.000 33.62 20.69 39.32 4.73
2909 5290 0.666274 TTCATACCGATCGGCGCATC 60.666 55.000 33.62 3.27 39.32 3.91
2911 5292 2.570284 ATACCGATCGGCGCATCCA 61.570 57.895 33.62 10.56 39.32 3.41
2912 5293 2.765250 ATACCGATCGGCGCATCCAC 62.765 60.000 33.62 0.00 39.32 4.02
2915 5296 4.545706 GATCGGCGCATCCACCCA 62.546 66.667 10.83 0.00 34.01 4.51
2916 5297 4.856801 ATCGGCGCATCCACCCAC 62.857 66.667 10.83 0.00 34.01 4.61
2921 5302 3.124921 CGCATCCACCCACGTTCC 61.125 66.667 0.00 0.00 0.00 3.62
2923 5304 1.378514 GCATCCACCCACGTTCCAT 60.379 57.895 0.00 0.00 0.00 3.41
2924 5305 1.656818 GCATCCACCCACGTTCCATG 61.657 60.000 0.00 0.00 0.00 3.66
2925 5306 1.378514 ATCCACCCACGTTCCATGC 60.379 57.895 0.00 0.00 0.00 4.06
2928 5309 4.715523 ACCCACGTTCCATGCCCG 62.716 66.667 0.00 0.00 0.00 6.13
2931 5312 3.133464 CACGTTCCATGCCCGCAT 61.133 61.111 0.00 0.00 37.08 4.73
2938 5319 3.028130 CATGCCCGCATGCTACTG 58.972 61.111 17.13 0.00 45.71 2.74
2945 5326 3.580193 GCATGCTACTGCCCGCTG 61.580 66.667 11.37 0.00 38.71 5.18
2946 5327 2.898840 CATGCTACTGCCCGCTGG 60.899 66.667 0.00 0.00 38.71 4.85
2956 5337 2.033448 CCCGCTGGGCTAACACAA 59.967 61.111 0.56 0.00 35.35 3.33
2957 5338 2.332654 CCCGCTGGGCTAACACAAC 61.333 63.158 0.56 0.00 35.35 3.32
2958 5339 2.677003 CCGCTGGGCTAACACAACG 61.677 63.158 0.00 0.00 0.00 4.10
2960 5341 2.332654 GCTGGGCTAACACAACGGG 61.333 63.158 0.00 0.00 0.00 5.28
2961 5342 1.072505 CTGGGCTAACACAACGGGT 59.927 57.895 0.00 0.00 0.00 5.28
2962 5343 0.953960 CTGGGCTAACACAACGGGTC 60.954 60.000 0.00 0.00 0.00 4.46
2963 5344 1.673337 GGGCTAACACAACGGGTCC 60.673 63.158 0.00 0.00 0.00 4.46
2964 5345 2.030958 GGCTAACACAACGGGTCCG 61.031 63.158 7.97 7.97 46.03 4.79
2966 5347 2.356075 TAACACAACGGGTCCGCG 60.356 61.111 9.55 0.00 44.19 6.46
2967 5348 3.862394 TAACACAACGGGTCCGCGG 62.862 63.158 22.12 22.12 44.19 6.46
2975 5356 4.144703 GGGTCCGCGGACTCCTTC 62.145 72.222 46.25 33.01 44.04 3.46
2976 5357 3.379445 GGTCCGCGGACTCCTTCA 61.379 66.667 46.25 16.57 44.04 3.02
2977 5358 2.126031 GTCCGCGGACTCCTTCAC 60.126 66.667 43.32 21.20 41.57 3.18
2978 5359 3.744719 TCCGCGGACTCCTTCACG 61.745 66.667 27.28 0.00 0.00 4.35
2985 5366 3.431922 CGGACTCCTTCACGCTATAAA 57.568 47.619 0.00 0.00 0.00 1.40
2986 5367 3.372954 CGGACTCCTTCACGCTATAAAG 58.627 50.000 0.00 0.00 0.00 1.85
2987 5368 3.066342 CGGACTCCTTCACGCTATAAAGA 59.934 47.826 0.00 0.00 0.00 2.52
2988 5369 4.261656 CGGACTCCTTCACGCTATAAAGAT 60.262 45.833 0.00 0.00 0.00 2.40
2989 5370 5.602628 GGACTCCTTCACGCTATAAAGATT 58.397 41.667 0.00 0.00 0.00 2.40
2990 5371 5.692654 GGACTCCTTCACGCTATAAAGATTC 59.307 44.000 0.00 0.00 0.00 2.52
2992 5373 6.043411 ACTCCTTCACGCTATAAAGATTCAC 58.957 40.000 0.00 0.00 0.00 3.18
2993 5374 5.041287 TCCTTCACGCTATAAAGATTCACG 58.959 41.667 0.00 0.00 0.00 4.35
2994 5375 4.209288 CCTTCACGCTATAAAGATTCACGG 59.791 45.833 0.00 0.00 0.00 4.94
2996 5377 2.863740 CACGCTATAAAGATTCACGGCA 59.136 45.455 0.00 0.00 0.00 5.69
2997 5378 3.308595 CACGCTATAAAGATTCACGGCAA 59.691 43.478 0.00 0.00 0.00 4.52
2998 5379 3.308866 ACGCTATAAAGATTCACGGCAAC 59.691 43.478 0.00 0.00 0.00 4.17
2999 5380 3.303132 CGCTATAAAGATTCACGGCAACC 60.303 47.826 0.00 0.00 0.00 3.77
3073 5459 0.246910 GAGAGACCCGGGTTCAAGTC 59.753 60.000 30.89 18.72 0.00 3.01
3115 5505 2.229784 CCCTGTCAGCCATTTTTGTCTC 59.770 50.000 0.00 0.00 0.00 3.36
3134 5524 4.035102 GGCCTGAAGCGTCCCCTT 62.035 66.667 0.00 0.00 45.17 3.95
3136 5526 3.068881 CCTGAAGCGTCCCCTTCA 58.931 61.111 0.00 4.74 46.48 3.02
3148 5538 2.281761 CCTTCAAGCGGGCACACT 60.282 61.111 0.00 0.00 0.00 3.55
3149 5539 2.328099 CCTTCAAGCGGGCACACTC 61.328 63.158 0.00 0.00 0.00 3.51
3150 5540 1.597854 CTTCAAGCGGGCACACTCA 60.598 57.895 0.00 0.00 0.00 3.41
3151 5541 1.845809 CTTCAAGCGGGCACACTCAC 61.846 60.000 0.00 0.00 0.00 3.51
3152 5542 3.716006 CAAGCGGGCACACTCACG 61.716 66.667 0.00 0.00 0.00 4.35
3156 5546 4.363990 CGGGCACACTCACGCTCT 62.364 66.667 0.00 0.00 0.00 4.09
3157 5547 2.433318 GGGCACACTCACGCTCTC 60.433 66.667 0.00 0.00 0.00 3.20
3158 5548 2.433318 GGCACACTCACGCTCTCC 60.433 66.667 0.00 0.00 0.00 3.71
3159 5549 2.653702 GCACACTCACGCTCTCCT 59.346 61.111 0.00 0.00 0.00 3.69
3160 5550 1.445238 GCACACTCACGCTCTCCTC 60.445 63.158 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.119352 GCCCATAAAGAGAGCAACAAAGG 60.119 47.826 0.00 0.00 0.00 3.11
130 131 8.029642 ACAAGTTCATAAGTGATAAAACTCGG 57.970 34.615 0.00 0.00 33.56 4.63
239 240 7.809806 GCATAAGAAAATGTATGTATTGGCTCC 59.190 37.037 0.00 0.00 31.54 4.70
280 281 9.705290 GTCAGTGGGTTATATGAAACAAATTTT 57.295 29.630 0.00 0.00 0.00 1.82
359 360 2.724708 CTCAGAGCGCGTGCAACTC 61.725 63.158 24.79 12.24 46.23 3.01
383 385 2.575805 AGCTAATAATGCCCAGGCTC 57.424 50.000 10.58 0.00 42.51 4.70
389 391 7.334171 ACAATTCACAAAAAGCTAATAATGCCC 59.666 33.333 0.00 0.00 0.00 5.36
401 403 8.955061 ATCATCGTCTAACAATTCACAAAAAG 57.045 30.769 0.00 0.00 0.00 2.27
437 440 9.167311 CTAGAGTAAATAGAAGGCAACAACATT 57.833 33.333 0.00 0.00 41.41 2.71
602 617 6.604735 AACGCTATCCAACATTCAACTATC 57.395 37.500 0.00 0.00 0.00 2.08
603 618 7.391148 AAAACGCTATCCAACATTCAACTAT 57.609 32.000 0.00 0.00 0.00 2.12
604 619 6.811253 AAAACGCTATCCAACATTCAACTA 57.189 33.333 0.00 0.00 0.00 2.24
605 620 5.705609 AAAACGCTATCCAACATTCAACT 57.294 34.783 0.00 0.00 0.00 3.16
606 621 7.044966 CGATTAAAACGCTATCCAACATTCAAC 60.045 37.037 0.00 0.00 0.00 3.18
607 622 6.964370 CGATTAAAACGCTATCCAACATTCAA 59.036 34.615 0.00 0.00 0.00 2.69
608 623 6.457663 CCGATTAAAACGCTATCCAACATTCA 60.458 38.462 0.00 0.00 0.00 2.57
609 624 5.907391 CCGATTAAAACGCTATCCAACATTC 59.093 40.000 0.00 0.00 0.00 2.67
610 625 5.355910 ACCGATTAAAACGCTATCCAACATT 59.644 36.000 0.00 0.00 0.00 2.71
611 626 4.879545 ACCGATTAAAACGCTATCCAACAT 59.120 37.500 0.00 0.00 0.00 2.71
612 627 4.255301 ACCGATTAAAACGCTATCCAACA 58.745 39.130 0.00 0.00 0.00 3.33
613 628 4.870221 ACCGATTAAAACGCTATCCAAC 57.130 40.909 0.00 0.00 0.00 3.77
614 629 5.417811 TGTACCGATTAAAACGCTATCCAA 58.582 37.500 0.00 0.00 0.00 3.53
615 630 5.008619 TGTACCGATTAAAACGCTATCCA 57.991 39.130 0.00 0.00 0.00 3.41
616 631 6.535274 AATGTACCGATTAAAACGCTATCC 57.465 37.500 0.00 0.00 0.00 2.59
617 632 8.918658 TCATAATGTACCGATTAAAACGCTATC 58.081 33.333 0.00 0.00 0.00 2.08
618 633 8.821147 TCATAATGTACCGATTAAAACGCTAT 57.179 30.769 0.00 0.00 0.00 2.97
619 634 7.922278 ACTCATAATGTACCGATTAAAACGCTA 59.078 33.333 0.00 0.00 0.00 4.26
620 635 6.759827 ACTCATAATGTACCGATTAAAACGCT 59.240 34.615 0.00 0.00 0.00 5.07
621 636 6.844279 CACTCATAATGTACCGATTAAAACGC 59.156 38.462 0.00 0.00 0.00 4.84
622 637 8.122306 TCACTCATAATGTACCGATTAAAACG 57.878 34.615 0.00 0.00 0.00 3.60
623 638 9.309516 TCTCACTCATAATGTACCGATTAAAAC 57.690 33.333 0.00 0.00 0.00 2.43
629 644 9.645059 CAATTATCTCACTCATAATGTACCGAT 57.355 33.333 0.00 0.00 0.00 4.18
630 645 8.856103 TCAATTATCTCACTCATAATGTACCGA 58.144 33.333 0.00 0.00 0.00 4.69
631 646 9.476202 TTCAATTATCTCACTCATAATGTACCG 57.524 33.333 0.00 0.00 0.00 4.02
638 653 9.904198 TCCAACATTCAATTATCTCACTCATAA 57.096 29.630 0.00 0.00 0.00 1.90
640 655 8.991783 ATCCAACATTCAATTATCTCACTCAT 57.008 30.769 0.00 0.00 0.00 2.90
641 656 9.551734 CTATCCAACATTCAATTATCTCACTCA 57.448 33.333 0.00 0.00 0.00 3.41
642 657 8.502387 GCTATCCAACATTCAATTATCTCACTC 58.498 37.037 0.00 0.00 0.00 3.51
643 658 7.172190 CGCTATCCAACATTCAATTATCTCACT 59.828 37.037 0.00 0.00 0.00 3.41
644 659 7.041780 ACGCTATCCAACATTCAATTATCTCAC 60.042 37.037 0.00 0.00 0.00 3.51
645 660 6.992123 ACGCTATCCAACATTCAATTATCTCA 59.008 34.615 0.00 0.00 0.00 3.27
646 661 7.426929 ACGCTATCCAACATTCAATTATCTC 57.573 36.000 0.00 0.00 0.00 2.75
647 662 7.807977 AACGCTATCCAACATTCAATTATCT 57.192 32.000 0.00 0.00 0.00 1.98
681 696 6.482835 TGAATGTTGGATAGCGTTTTAATCG 58.517 36.000 0.00 0.00 0.00 3.34
685 700 9.944663 GATAATTGAATGTTGGATAGCGTTTTA 57.055 29.630 0.00 0.00 0.00 1.52
720 740 3.412237 ACGGCTTTAGTGTGGTACATT 57.588 42.857 0.00 0.00 44.52 2.71
764 792 7.981225 AGCAACAAGAAAAATACACAATCAGTT 59.019 29.630 0.00 0.00 0.00 3.16
1056 1091 4.153296 GCTTCCTGAACTTTAGCAGAAGAC 59.847 45.833 6.14 1.70 34.06 3.01
1674 3270 3.482156 GCCATTAGCTTCTGGATCTCA 57.518 47.619 16.27 0.00 38.99 3.27
1818 3414 0.250513 CTACACCAAGTGGGCTCTCC 59.749 60.000 1.69 0.00 42.05 3.71
1872 3468 3.627577 CCATTACCGTGCTTAGCTTCAAT 59.372 43.478 5.60 0.00 0.00 2.57
2219 3828 5.897377 ATAATACAGGCAAACAGTTGGAC 57.103 39.130 0.00 0.00 35.10 4.02
2225 3834 7.250569 CACAAGGTTATAATACAGGCAAACAG 58.749 38.462 0.00 0.00 0.00 3.16
2250 3860 2.365293 ACATCCAGGTTTCAACAAAGGC 59.635 45.455 0.00 0.00 0.00 4.35
2256 3866 6.575162 ACAGATTAACATCCAGGTTTCAAC 57.425 37.500 0.00 0.00 32.29 3.18
2393 4039 5.876357 TCATCTGGTAAAACAGTAAAGCCT 58.124 37.500 0.00 0.00 39.48 4.58
2439 4087 1.357272 ACAGTGGTACTTTGGGCCCA 61.357 55.000 24.45 24.45 0.00 5.36
2440 4088 0.893727 CACAGTGGTACTTTGGGCCC 60.894 60.000 17.59 17.59 0.00 5.80
2560 4704 0.107654 CTTCCTTACAGCCTTCCCCG 60.108 60.000 0.00 0.00 0.00 5.73
2567 4711 1.077429 CAGCCCCTTCCTTACAGCC 60.077 63.158 0.00 0.00 0.00 4.85
2576 4720 0.960364 TGAACAATCGCAGCCCCTTC 60.960 55.000 0.00 0.00 0.00 3.46
2660 4971 4.080356 AGGTGCTACAAATGGCTTGATCTA 60.080 41.667 0.00 0.00 38.50 1.98
2665 4976 4.485163 GTTTAGGTGCTACAAATGGCTTG 58.515 43.478 0.00 0.00 41.19 4.01
2667 4978 3.089284 GGTTTAGGTGCTACAAATGGCT 58.911 45.455 0.00 0.00 32.44 4.75
2668 4979 3.089284 AGGTTTAGGTGCTACAAATGGC 58.911 45.455 0.00 0.00 0.00 4.40
2669 4980 3.694566 GGAGGTTTAGGTGCTACAAATGG 59.305 47.826 0.00 0.00 0.00 3.16
2670 4981 3.694566 GGGAGGTTTAGGTGCTACAAATG 59.305 47.826 0.00 0.00 0.00 2.32
2672 4983 2.983898 AGGGAGGTTTAGGTGCTACAAA 59.016 45.455 0.00 0.00 0.00 2.83
2673 4984 2.304761 CAGGGAGGTTTAGGTGCTACAA 59.695 50.000 0.00 0.00 0.00 2.41
2675 4986 1.407025 GCAGGGAGGTTTAGGTGCTAC 60.407 57.143 0.00 0.00 0.00 3.58
2676 4987 0.909623 GCAGGGAGGTTTAGGTGCTA 59.090 55.000 0.00 0.00 0.00 3.49
2692 5003 3.340727 CGGGAGGTACGTTTAGCAG 57.659 57.895 0.00 0.00 0.00 4.24
2737 5108 1.881973 GGCATCACTGAAAGCAAGACA 59.118 47.619 8.56 0.00 37.60 3.41
2746 5117 0.250234 CTTCTCGGGGCATCACTGAA 59.750 55.000 0.00 0.00 0.00 3.02
2749 5120 1.965754 GAGCTTCTCGGGGCATCACT 61.966 60.000 0.00 0.00 0.00 3.41
2750 5121 1.522580 GAGCTTCTCGGGGCATCAC 60.523 63.158 0.00 0.00 0.00 3.06
2751 5122 1.964608 CTGAGCTTCTCGGGGCATCA 61.965 60.000 0.00 0.00 33.57 3.07
2752 5123 1.227497 CTGAGCTTCTCGGGGCATC 60.227 63.158 0.00 0.00 33.57 3.91
2753 5124 1.684386 CTCTGAGCTTCTCGGGGCAT 61.684 60.000 3.14 0.00 37.46 4.40
2754 5125 2.283894 TCTGAGCTTCTCGGGGCA 60.284 61.111 3.14 0.00 37.46 5.36
2755 5126 1.893919 AACTCTGAGCTTCTCGGGGC 61.894 60.000 4.19 0.00 40.80 5.80
2756 5127 0.108424 CAACTCTGAGCTTCTCGGGG 60.108 60.000 4.19 1.18 42.66 5.73
2757 5128 0.891373 TCAACTCTGAGCTTCTCGGG 59.109 55.000 4.19 0.00 37.46 5.14
2758 5129 2.165234 TCATCAACTCTGAGCTTCTCGG 59.835 50.000 4.19 0.00 38.15 4.63
2759 5130 3.500558 TCATCAACTCTGAGCTTCTCG 57.499 47.619 4.19 0.00 34.23 4.04
2760 5131 4.626604 CAGTTCATCAACTCTGAGCTTCTC 59.373 45.833 4.19 0.00 41.24 2.87
2761 5132 4.563168 CCAGTTCATCAACTCTGAGCTTCT 60.563 45.833 4.19 0.00 41.24 2.85
2762 5133 3.683822 CCAGTTCATCAACTCTGAGCTTC 59.316 47.826 4.19 0.00 41.24 3.86
2763 5134 3.326006 TCCAGTTCATCAACTCTGAGCTT 59.674 43.478 4.19 0.00 41.24 3.74
2764 5135 2.902486 TCCAGTTCATCAACTCTGAGCT 59.098 45.455 4.19 0.00 41.24 4.09
2765 5136 3.260740 CTCCAGTTCATCAACTCTGAGC 58.739 50.000 4.19 0.00 41.24 4.26
2766 5137 4.220382 AGACTCCAGTTCATCAACTCTGAG 59.780 45.833 2.45 2.45 41.24 3.35
2767 5138 4.155709 AGACTCCAGTTCATCAACTCTGA 58.844 43.478 0.00 0.00 41.24 3.27
2768 5139 4.533919 AGACTCCAGTTCATCAACTCTG 57.466 45.455 0.00 0.00 41.24 3.35
2769 5140 5.184864 CAGTAGACTCCAGTTCATCAACTCT 59.815 44.000 0.00 0.00 41.24 3.24
2770 5141 5.184096 TCAGTAGACTCCAGTTCATCAACTC 59.816 44.000 0.00 0.00 41.24 3.01
2771 5142 5.080337 TCAGTAGACTCCAGTTCATCAACT 58.920 41.667 0.00 0.00 44.26 3.16
2772 5143 5.184096 TCTCAGTAGACTCCAGTTCATCAAC 59.816 44.000 0.00 0.00 0.00 3.18
2773 5144 5.325239 TCTCAGTAGACTCCAGTTCATCAA 58.675 41.667 0.00 0.00 0.00 2.57
2774 5145 4.923415 TCTCAGTAGACTCCAGTTCATCA 58.077 43.478 0.00 0.00 0.00 3.07
2775 5146 5.189928 TCTCTCAGTAGACTCCAGTTCATC 58.810 45.833 0.00 0.00 0.00 2.92
2776 5147 5.186256 TCTCTCAGTAGACTCCAGTTCAT 57.814 43.478 0.00 0.00 0.00 2.57
2777 5148 4.042311 ACTCTCTCAGTAGACTCCAGTTCA 59.958 45.833 0.00 0.00 31.37 3.18
2778 5149 4.585879 ACTCTCTCAGTAGACTCCAGTTC 58.414 47.826 0.00 0.00 31.37 3.01
2779 5150 4.650972 ACTCTCTCAGTAGACTCCAGTT 57.349 45.455 0.00 0.00 31.37 3.16
2780 5151 4.331968 CAACTCTCTCAGTAGACTCCAGT 58.668 47.826 0.00 0.00 32.30 4.00
2781 5152 3.694072 CCAACTCTCTCAGTAGACTCCAG 59.306 52.174 0.00 0.00 32.30 3.86
2782 5153 3.330998 TCCAACTCTCTCAGTAGACTCCA 59.669 47.826 0.00 0.00 32.30 3.86
2783 5154 3.945285 CTCCAACTCTCTCAGTAGACTCC 59.055 52.174 0.00 0.00 32.30 3.85
2803 5174 0.388520 GCAATTGGGCCGAACAACTC 60.389 55.000 0.76 0.00 0.00 3.01
2804 5175 1.665442 GCAATTGGGCCGAACAACT 59.335 52.632 0.76 0.00 0.00 3.16
2875 5256 1.605058 ATGAACCGCGTGTAGAGGCT 61.605 55.000 4.92 0.00 44.30 4.58
2891 5272 1.080772 GATGCGCCGATCGGTATGA 60.081 57.895 33.33 16.52 38.94 2.15
2895 5276 4.891727 GTGGATGCGCCGATCGGT 62.892 66.667 33.33 15.53 40.66 4.69
2898 5279 4.545706 TGGGTGGATGCGCCGATC 62.546 66.667 10.99 1.21 40.66 3.69
2899 5280 4.856801 GTGGGTGGATGCGCCGAT 62.857 66.667 10.99 0.00 40.66 4.18
2904 5285 3.124921 GGAACGTGGGTGGATGCG 61.125 66.667 0.00 0.00 0.00 4.73
2905 5286 1.378514 ATGGAACGTGGGTGGATGC 60.379 57.895 0.00 0.00 0.00 3.91
2906 5287 1.656818 GCATGGAACGTGGGTGGATG 61.657 60.000 0.00 0.00 0.00 3.51
2908 5289 2.033448 GCATGGAACGTGGGTGGA 59.967 61.111 0.00 0.00 0.00 4.02
2909 5290 3.061848 GGCATGGAACGTGGGTGG 61.062 66.667 0.00 0.00 0.00 4.61
2911 5292 4.715523 CGGGCATGGAACGTGGGT 62.716 66.667 0.00 0.00 0.00 4.51
2928 5309 3.580193 CAGCGGGCAGTAGCATGC 61.580 66.667 10.51 10.51 45.74 4.06
2930 5311 4.181010 CCCAGCGGGCAGTAGCAT 62.181 66.667 0.00 0.00 44.61 3.79
2941 5322 2.677003 CCGTTGTGTTAGCCCAGCG 61.677 63.158 0.00 0.00 35.44 5.18
2942 5323 2.332654 CCCGTTGTGTTAGCCCAGC 61.333 63.158 0.00 0.00 0.00 4.85
2943 5324 0.953960 GACCCGTTGTGTTAGCCCAG 60.954 60.000 0.00 0.00 0.00 4.45
2944 5325 1.071814 GACCCGTTGTGTTAGCCCA 59.928 57.895 0.00 0.00 0.00 5.36
2945 5326 1.673337 GGACCCGTTGTGTTAGCCC 60.673 63.158 0.00 0.00 0.00 5.19
2946 5327 2.030958 CGGACCCGTTGTGTTAGCC 61.031 63.158 0.00 0.00 34.35 3.93
2947 5328 2.674084 GCGGACCCGTTGTGTTAGC 61.674 63.158 10.37 0.00 42.09 3.09
2948 5329 2.377310 CGCGGACCCGTTGTGTTAG 61.377 63.158 10.37 0.00 42.09 2.34
2958 5339 4.144703 GAAGGAGTCCGCGGACCC 62.145 72.222 45.66 41.32 45.59 4.46
2960 5341 2.126031 GTGAAGGAGTCCGCGGAC 60.126 66.667 43.92 43.92 44.86 4.79
2961 5342 3.744719 CGTGAAGGAGTCCGCGGA 61.745 66.667 27.28 27.28 0.00 5.54
2963 5344 2.337749 ATAGCGTGAAGGAGTCCGCG 62.338 60.000 2.76 0.00 45.18 6.46
2964 5345 0.666913 TATAGCGTGAAGGAGTCCGC 59.333 55.000 2.76 2.85 42.65 5.54
2966 5347 4.650754 TCTTTATAGCGTGAAGGAGTCC 57.349 45.455 0.00 0.00 0.00 3.85
2967 5348 6.199342 GTGAATCTTTATAGCGTGAAGGAGTC 59.801 42.308 1.95 1.95 0.00 3.36
2968 5349 6.043411 GTGAATCTTTATAGCGTGAAGGAGT 58.957 40.000 0.00 0.00 0.00 3.85
2969 5350 5.174035 CGTGAATCTTTATAGCGTGAAGGAG 59.826 44.000 0.00 0.00 0.00 3.69
2970 5351 5.041287 CGTGAATCTTTATAGCGTGAAGGA 58.959 41.667 0.00 0.00 0.00 3.36
2971 5352 4.209288 CCGTGAATCTTTATAGCGTGAAGG 59.791 45.833 0.00 0.00 0.00 3.46
2972 5353 4.318121 GCCGTGAATCTTTATAGCGTGAAG 60.318 45.833 0.00 0.00 0.00 3.02
2973 5354 3.554324 GCCGTGAATCTTTATAGCGTGAA 59.446 43.478 0.00 0.00 0.00 3.18
2974 5355 3.120792 GCCGTGAATCTTTATAGCGTGA 58.879 45.455 0.00 0.00 0.00 4.35
2975 5356 2.863740 TGCCGTGAATCTTTATAGCGTG 59.136 45.455 0.00 0.00 0.00 5.34
2976 5357 3.173668 TGCCGTGAATCTTTATAGCGT 57.826 42.857 0.00 0.00 0.00 5.07
2977 5358 3.303132 GGTTGCCGTGAATCTTTATAGCG 60.303 47.826 0.00 0.00 0.00 4.26
2978 5359 3.303132 CGGTTGCCGTGAATCTTTATAGC 60.303 47.826 0.00 0.00 42.73 2.97
3009 5390 1.146637 CCTAGACTACGACGGATCCG 58.853 60.000 32.20 32.20 46.03 4.18
3010 5391 1.872313 CACCTAGACTACGACGGATCC 59.128 57.143 0.00 0.00 0.00 3.36
3011 5392 1.872313 CCACCTAGACTACGACGGATC 59.128 57.143 0.00 0.00 0.00 3.36
3134 5524 2.280797 GTGAGTGTGCCCGCTTGA 60.281 61.111 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.