Multiple sequence alignment - TraesCS3B01G386200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G386200 chr3B 100.000 2156 0 0 1 2156 606421938 606419783 0.000000e+00 3982.0
1 TraesCS3B01G386200 chr3B 81.538 1040 75 54 330 1296 606559531 606558536 0.000000e+00 749.0
2 TraesCS3B01G386200 chr3B 94.278 367 16 5 1793 2156 670170610 670170246 6.720000e-155 556.0
3 TraesCS3B01G386200 chr3B 94.150 359 17 4 1800 2156 786789964 786789608 5.230000e-151 544.0
4 TraesCS3B01G386200 chr3A 89.268 997 43 26 818 1790 601374708 601373752 0.000000e+00 1190.0
5 TraesCS3B01G386200 chr3A 82.582 1154 92 43 174 1245 601381549 601380423 0.000000e+00 917.0
6 TraesCS3B01G386200 chr3A 80.214 561 56 32 891 1433 601386366 601385843 9.400000e-99 370.0
7 TraesCS3B01G386200 chr3A 89.381 226 17 4 581 804 601375084 601374864 5.860000e-71 278.0
8 TraesCS3B01G386200 chr3A 90.728 151 11 1 1478 1628 601380301 601380154 4.690000e-47 198.0
9 TraesCS3B01G386200 chr3A 75.391 447 60 28 850 1289 601368452 601368049 1.020000e-38 171.0
10 TraesCS3B01G386200 chr3A 72.780 518 80 33 717 1222 601342878 601342410 3.760000e-23 119.0
11 TraesCS3B01G386200 chr3A 85.185 108 13 2 1334 1438 601380408 601380301 8.140000e-20 108.0
12 TraesCS3B01G386200 chr3A 100.000 35 0 0 1627 1661 601380124 601380090 4.970000e-07 65.8
13 TraesCS3B01G386200 chr3A 100.000 29 0 0 1527 1555 601385722 601385694 1.000000e-03 54.7
14 TraesCS3B01G386200 chr3D 84.230 1059 74 33 172 1159 459160897 459159861 0.000000e+00 944.0
15 TraesCS3B01G386200 chr3D 94.476 525 22 3 1227 1751 459159851 459159334 0.000000e+00 802.0
16 TraesCS3B01G386200 chr3D 82.018 773 76 34 676 1433 459195192 459194468 1.100000e-167 599.0
17 TraesCS3B01G386200 chr3D 95.225 356 12 5 1804 2156 484285178 484285531 1.870000e-155 558.0
18 TraesCS3B01G386200 chr3D 81.351 370 36 16 330 675 459195587 459195227 9.810000e-69 270.0
19 TraesCS3B01G386200 chr3D 100.000 29 0 0 1527 1555 459194347 459194319 1.000000e-03 54.7
20 TraesCS3B01G386200 chr5B 95.184 353 13 4 1807 2156 658742473 658742122 2.420000e-154 555.0
21 TraesCS3B01G386200 chr6B 94.134 358 17 4 1802 2156 5039502 5039858 1.880000e-150 542.0
22 TraesCS3B01G386200 chr4B 93.425 365 18 6 1794 2156 393153933 393154293 8.760000e-149 536.0
23 TraesCS3B01G386200 chr7D 93.629 361 17 6 1798 2156 177572417 177572061 3.150000e-148 534.0
24 TraesCS3B01G386200 chrUn 93.188 367 17 7 1793 2156 356305709 356306070 1.130000e-147 532.0
25 TraesCS3B01G386200 chrUn 80.342 117 15 4 59 167 243356732 243356616 4.930000e-12 82.4
26 TraesCS3B01G386200 chr7B 93.169 366 19 6 1795 2156 8924726 8924363 1.130000e-147 532.0
27 TraesCS3B01G386200 chr1B 93.642 173 5 2 1 167 16998470 16998298 9.880000e-64 254.0
28 TraesCS3B01G386200 chr1B 93.064 173 6 2 1 167 424216617 424216789 4.600000e-62 248.0
29 TraesCS3B01G386200 chr5D 80.342 117 15 4 59 167 552104487 552104603 4.930000e-12 82.4
30 TraesCS3B01G386200 chr4A 91.304 46 2 1 125 168 741612265 741612220 6.430000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G386200 chr3B 606419783 606421938 2155 True 3982.00 3982 100.000000 1 2156 1 chr3B.!!$R1 2155
1 TraesCS3B01G386200 chr3B 606558536 606559531 995 True 749.00 749 81.538000 330 1296 1 chr3B.!!$R2 966
2 TraesCS3B01G386200 chr3A 601373752 601375084 1332 True 734.00 1190 89.324500 581 1790 2 chr3A.!!$R3 1209
3 TraesCS3B01G386200 chr3A 601380090 601381549 1459 True 322.20 917 89.623750 174 1661 4 chr3A.!!$R4 1487
4 TraesCS3B01G386200 chr3A 601385694 601386366 672 True 212.35 370 90.107000 891 1555 2 chr3A.!!$R5 664
5 TraesCS3B01G386200 chr3D 459159334 459160897 1563 True 873.00 944 89.353000 172 1751 2 chr3D.!!$R1 1579
6 TraesCS3B01G386200 chr3D 459194319 459195587 1268 True 307.90 599 87.789667 330 1555 3 chr3D.!!$R2 1225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.11153 GCAACGCGTCATCGATGATC 60.112 55.0 29.53 21.88 39.3 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 2314 0.106918 AAACAGGACTGCGGGTTGAA 60.107 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 7.961325 TTTGGAAAATGAAGGCAATAAGAAC 57.039 32.000 0.00 0.00 0.00 3.01
52 53 6.662865 TGGAAAATGAAGGCAATAAGAACA 57.337 33.333 0.00 0.00 0.00 3.18
53 54 7.060383 TGGAAAATGAAGGCAATAAGAACAA 57.940 32.000 0.00 0.00 0.00 2.83
54 55 7.153985 TGGAAAATGAAGGCAATAAGAACAAG 58.846 34.615 0.00 0.00 0.00 3.16
55 56 7.154656 GGAAAATGAAGGCAATAAGAACAAGT 58.845 34.615 0.00 0.00 0.00 3.16
56 57 7.329471 GGAAAATGAAGGCAATAAGAACAAGTC 59.671 37.037 0.00 0.00 0.00 3.01
57 58 6.899393 AATGAAGGCAATAAGAACAAGTCA 57.101 33.333 0.00 0.00 0.00 3.41
58 59 5.689383 TGAAGGCAATAAGAACAAGTCAC 57.311 39.130 0.00 0.00 0.00 3.67
59 60 5.129634 TGAAGGCAATAAGAACAAGTCACA 58.870 37.500 0.00 0.00 0.00 3.58
60 61 5.592282 TGAAGGCAATAAGAACAAGTCACAA 59.408 36.000 0.00 0.00 0.00 3.33
61 62 5.695851 AGGCAATAAGAACAAGTCACAAG 57.304 39.130 0.00 0.00 0.00 3.16
62 63 5.376625 AGGCAATAAGAACAAGTCACAAGA 58.623 37.500 0.00 0.00 0.00 3.02
63 64 5.827797 AGGCAATAAGAACAAGTCACAAGAA 59.172 36.000 0.00 0.00 0.00 2.52
64 65 6.321181 AGGCAATAAGAACAAGTCACAAGAAA 59.679 34.615 0.00 0.00 0.00 2.52
65 66 6.978080 GGCAATAAGAACAAGTCACAAGAAAA 59.022 34.615 0.00 0.00 0.00 2.29
66 67 7.491048 GGCAATAAGAACAAGTCACAAGAAAAA 59.509 33.333 0.00 0.00 0.00 1.94
67 68 8.321005 GCAATAAGAACAAGTCACAAGAAAAAC 58.679 33.333 0.00 0.00 0.00 2.43
68 69 9.352784 CAATAAGAACAAGTCACAAGAAAAACA 57.647 29.630 0.00 0.00 0.00 2.83
69 70 8.911247 ATAAGAACAAGTCACAAGAAAAACAC 57.089 30.769 0.00 0.00 0.00 3.32
70 71 6.325919 AGAACAAGTCACAAGAAAAACACA 57.674 33.333 0.00 0.00 0.00 3.72
71 72 6.744112 AGAACAAGTCACAAGAAAAACACAA 58.256 32.000 0.00 0.00 0.00 3.33
72 73 7.378181 AGAACAAGTCACAAGAAAAACACAAT 58.622 30.769 0.00 0.00 0.00 2.71
73 74 8.519526 AGAACAAGTCACAAGAAAAACACAATA 58.480 29.630 0.00 0.00 0.00 1.90
74 75 8.460831 AACAAGTCACAAGAAAAACACAATAC 57.539 30.769 0.00 0.00 0.00 1.89
75 76 7.826690 ACAAGTCACAAGAAAAACACAATACT 58.173 30.769 0.00 0.00 0.00 2.12
76 77 8.303876 ACAAGTCACAAGAAAAACACAATACTT 58.696 29.630 0.00 0.00 0.00 2.24
77 78 8.586273 CAAGTCACAAGAAAAACACAATACTTG 58.414 33.333 0.00 0.00 39.98 3.16
78 79 8.050778 AGTCACAAGAAAAACACAATACTTGA 57.949 30.769 0.00 0.00 38.30 3.02
79 80 8.686334 AGTCACAAGAAAAACACAATACTTGAT 58.314 29.630 0.00 0.00 38.30 2.57
80 81 9.944663 GTCACAAGAAAAACACAATACTTGATA 57.055 29.630 0.00 0.00 38.30 2.15
81 82 9.944663 TCACAAGAAAAACACAATACTTGATAC 57.055 29.630 0.00 0.00 38.30 2.24
82 83 9.950680 CACAAGAAAAACACAATACTTGATACT 57.049 29.630 0.00 0.00 38.30 2.12
83 84 9.950680 ACAAGAAAAACACAATACTTGATACTG 57.049 29.630 0.00 0.00 38.30 2.74
84 85 9.950680 CAAGAAAAACACAATACTTGATACTGT 57.049 29.630 0.00 0.00 37.49 3.55
87 88 9.543018 GAAAAACACAATACTTGATACTGTAGC 57.457 33.333 0.00 0.00 0.00 3.58
88 89 8.615878 AAAACACAATACTTGATACTGTAGCA 57.384 30.769 0.93 0.93 0.00 3.49
89 90 8.792830 AAACACAATACTTGATACTGTAGCAT 57.207 30.769 6.60 0.00 0.00 3.79
90 91 9.884636 AAACACAATACTTGATACTGTAGCATA 57.115 29.630 6.60 0.00 0.00 3.14
91 92 8.873215 ACACAATACTTGATACTGTAGCATAC 57.127 34.615 6.60 0.00 43.42 2.39
126 127 9.819267 ATAACTAAATACCTTAGCAACTGAGTC 57.181 33.333 0.00 0.00 40.78 3.36
127 128 7.241042 ACTAAATACCTTAGCAACTGAGTCA 57.759 36.000 0.00 0.00 40.78 3.41
128 129 7.676947 ACTAAATACCTTAGCAACTGAGTCAA 58.323 34.615 0.00 0.00 40.78 3.18
129 130 8.154856 ACTAAATACCTTAGCAACTGAGTCAAA 58.845 33.333 0.00 0.00 40.78 2.69
130 131 7.817418 AAATACCTTAGCAACTGAGTCAAAA 57.183 32.000 0.00 0.00 0.00 2.44
131 132 8.409358 AAATACCTTAGCAACTGAGTCAAAAT 57.591 30.769 0.00 0.00 0.00 1.82
132 133 9.515226 AAATACCTTAGCAACTGAGTCAAAATA 57.485 29.630 0.00 0.00 0.00 1.40
133 134 8.723942 ATACCTTAGCAACTGAGTCAAAATAG 57.276 34.615 0.00 0.00 0.00 1.73
134 135 6.769512 ACCTTAGCAACTGAGTCAAAATAGA 58.230 36.000 0.00 0.00 0.00 1.98
135 136 7.398024 ACCTTAGCAACTGAGTCAAAATAGAT 58.602 34.615 0.00 0.00 0.00 1.98
136 137 7.335422 ACCTTAGCAACTGAGTCAAAATAGATG 59.665 37.037 0.00 0.00 0.00 2.90
137 138 7.201679 CCTTAGCAACTGAGTCAAAATAGATGG 60.202 40.741 0.00 0.00 0.00 3.51
138 139 4.946157 AGCAACTGAGTCAAAATAGATGGG 59.054 41.667 0.00 0.00 0.00 4.00
139 140 4.439289 GCAACTGAGTCAAAATAGATGGGC 60.439 45.833 0.00 0.00 0.00 5.36
140 141 3.535561 ACTGAGTCAAAATAGATGGGCG 58.464 45.455 0.00 0.00 0.00 6.13
141 142 2.288666 TGAGTCAAAATAGATGGGCGC 58.711 47.619 0.00 0.00 0.00 6.53
142 143 2.288666 GAGTCAAAATAGATGGGCGCA 58.711 47.619 10.83 5.70 0.00 6.09
143 144 2.289002 GAGTCAAAATAGATGGGCGCAG 59.711 50.000 10.83 0.00 0.00 5.18
157 158 3.478394 GCAGCAACGCGTCATCGA 61.478 61.111 14.44 0.00 39.71 3.59
158 159 2.802667 GCAGCAACGCGTCATCGAT 61.803 57.895 14.44 0.00 39.71 3.59
159 160 1.012998 CAGCAACGCGTCATCGATG 60.013 57.895 19.61 19.61 39.71 3.84
160 161 1.153842 AGCAACGCGTCATCGATGA 60.154 52.632 23.99 23.99 39.71 2.92
161 162 0.528466 AGCAACGCGTCATCGATGAT 60.528 50.000 29.53 12.24 39.30 2.45
162 163 0.111530 GCAACGCGTCATCGATGATC 60.112 55.000 29.53 21.88 39.30 2.92
163 164 1.481240 CAACGCGTCATCGATGATCT 58.519 50.000 29.53 10.69 39.30 2.75
164 165 2.650608 CAACGCGTCATCGATGATCTA 58.349 47.619 29.53 5.87 39.30 1.98
165 166 2.603224 ACGCGTCATCGATGATCTAG 57.397 50.000 29.53 21.69 39.30 2.43
166 167 1.874231 ACGCGTCATCGATGATCTAGT 59.126 47.619 29.53 22.26 39.30 2.57
167 168 2.290916 ACGCGTCATCGATGATCTAGTT 59.709 45.455 29.53 10.70 39.30 2.24
168 169 2.654056 CGCGTCATCGATGATCTAGTTG 59.346 50.000 29.53 14.57 39.30 3.16
169 170 3.633235 GCGTCATCGATGATCTAGTTGT 58.367 45.455 29.53 0.00 39.30 3.32
170 171 3.423536 GCGTCATCGATGATCTAGTTGTG 59.576 47.826 29.53 12.47 39.30 3.33
176 177 5.506686 TCGATGATCTAGTTGTGAGGAAG 57.493 43.478 0.00 0.00 0.00 3.46
220 221 1.747355 CTCACCCACATTCATGCCTTC 59.253 52.381 0.00 0.00 0.00 3.46
231 235 7.412853 CACATTCATGCCTTCTACACTTATTC 58.587 38.462 0.00 0.00 0.00 1.75
252 256 9.794685 TTATTCCGTATATAAAACACACGTACA 57.205 29.630 0.00 0.00 0.00 2.90
254 258 5.736824 TCCGTATATAAAACACACGTACACG 59.263 40.000 0.00 0.00 46.33 4.49
264 268 2.984471 CACACGTACACGCTCTGTAAAT 59.016 45.455 0.85 0.00 44.43 1.40
270 274 7.541783 ACACGTACACGCTCTGTAAATAAATAA 59.458 33.333 0.85 0.00 44.43 1.40
272 276 8.589629 ACGTACACGCTCTGTAAATAAATAAAG 58.410 33.333 0.85 0.00 44.43 1.85
318 327 5.494724 AGAACCGTAAATCTTAGGTTTCCC 58.505 41.667 0.00 0.00 45.88 3.97
319 328 5.250082 AGAACCGTAAATCTTAGGTTTCCCT 59.750 40.000 0.00 0.00 45.88 4.20
320 329 5.509832 ACCGTAAATCTTAGGTTTCCCTT 57.490 39.130 0.00 0.00 42.66 3.95
355 364 0.464452 GAGGCCGTACTAGCAACCAT 59.536 55.000 0.00 0.00 0.00 3.55
388 397 3.594134 GAGGGCGATGATTAATCTGGAG 58.406 50.000 16.24 6.70 32.61 3.86
442 452 1.895131 CAGCAATAAACCCTTGGCTGT 59.105 47.619 0.00 0.00 0.00 4.40
464 478 1.087771 GGCTGGATACGTTGTTCCCG 61.088 60.000 0.00 0.00 42.51 5.14
505 538 5.346181 ACCACTGGTAGCTTTAGATTCTC 57.654 43.478 0.00 0.00 32.11 2.87
604 638 1.639298 AAAGACGCGCTGCAGAATCC 61.639 55.000 20.43 0.00 0.00 3.01
736 817 0.170116 GTGAGAGCCGAGAGTGACAG 59.830 60.000 0.00 0.00 0.00 3.51
759 840 1.968017 CTCTGCACGCACCCACAAT 60.968 57.895 0.00 0.00 0.00 2.71
769 850 1.892474 GCACCCACAATAGGAGCAAAA 59.108 47.619 0.00 0.00 32.18 2.44
791 872 1.129917 TACCCCACACGACTCCAAAA 58.870 50.000 0.00 0.00 0.00 2.44
887 1136 2.967397 GTGCCTAAAAACCCCGCC 59.033 61.111 0.00 0.00 0.00 6.13
952 1216 1.809567 GCCTTCCCTGCAACACAAGG 61.810 60.000 8.42 8.42 37.31 3.61
1006 1303 0.613012 AAAGGGAGGTGCAATGGAGC 60.613 55.000 0.00 0.00 0.00 4.70
1029 1326 0.611896 GGTACCCCTGCAACAGCAAT 60.612 55.000 0.00 0.00 37.91 3.56
1033 1330 0.966875 CCCCTGCAACAGCAATAGCA 60.967 55.000 0.00 0.00 45.49 3.49
1202 1502 1.734465 CAAGCACCTTCTCGACCAATC 59.266 52.381 0.00 0.00 0.00 2.67
1203 1503 1.270907 AGCACCTTCTCGACCAATCT 58.729 50.000 0.00 0.00 0.00 2.40
1204 1504 2.457598 AGCACCTTCTCGACCAATCTA 58.542 47.619 0.00 0.00 0.00 1.98
1205 1505 2.428890 AGCACCTTCTCGACCAATCTAG 59.571 50.000 0.00 0.00 0.00 2.43
1269 1581 1.815003 GGGATTGTGCAGGTTGAAGAG 59.185 52.381 0.00 0.00 0.00 2.85
1342 1655 1.923909 GGTTCCACCTAGCCCCTGT 60.924 63.158 0.00 0.00 34.73 4.00
1363 1676 1.536766 TCGCTTTGAGGTTTGCTGATG 59.463 47.619 0.00 0.00 0.00 3.07
1378 1691 2.224018 GCTGATGAGATCTCGCTTCCTT 60.224 50.000 17.76 0.00 0.00 3.36
1412 1725 4.675404 GTTGTCCACGAGTGAGGG 57.325 61.111 4.59 0.00 0.00 4.30
1441 1757 2.957006 GGAGATTGCAGATCCATGCTTT 59.043 45.455 8.27 0.00 46.63 3.51
1483 1799 6.599638 GCTTCTAATGGGAATTACAGTTCTGT 59.400 38.462 10.33 10.33 0.00 3.41
1690 2095 0.693049 CAGGGCCCCTTAGCGATAAT 59.307 55.000 21.43 0.00 0.00 1.28
1790 2214 4.207891 TGATGTTCCTAGGTGCTTCTTC 57.792 45.455 9.08 4.95 0.00 2.87
1791 2215 3.055094 TGATGTTCCTAGGTGCTTCTTCC 60.055 47.826 9.08 0.00 0.00 3.46
1792 2216 2.621070 TGTTCCTAGGTGCTTCTTCCT 58.379 47.619 9.08 0.00 37.80 3.36
1793 2217 2.979678 TGTTCCTAGGTGCTTCTTCCTT 59.020 45.455 9.08 0.00 35.51 3.36
1794 2218 4.164981 TGTTCCTAGGTGCTTCTTCCTTA 58.835 43.478 9.08 0.00 35.51 2.69
1795 2219 4.783227 TGTTCCTAGGTGCTTCTTCCTTAT 59.217 41.667 9.08 0.00 35.51 1.73
1796 2220 5.104900 TGTTCCTAGGTGCTTCTTCCTTATC 60.105 44.000 9.08 0.00 35.51 1.75
1797 2221 4.884961 TCCTAGGTGCTTCTTCCTTATCT 58.115 43.478 9.08 0.00 35.51 1.98
1798 2222 5.281314 TCCTAGGTGCTTCTTCCTTATCTT 58.719 41.667 9.08 0.00 35.51 2.40
1799 2223 5.726793 TCCTAGGTGCTTCTTCCTTATCTTT 59.273 40.000 9.08 0.00 35.51 2.52
1800 2224 6.901300 TCCTAGGTGCTTCTTCCTTATCTTTA 59.099 38.462 9.08 0.00 35.51 1.85
1801 2225 7.402071 TCCTAGGTGCTTCTTCCTTATCTTTAA 59.598 37.037 9.08 0.00 35.51 1.52
1802 2226 8.214364 CCTAGGTGCTTCTTCCTTATCTTTAAT 58.786 37.037 0.00 0.00 35.51 1.40
1803 2227 9.267084 CTAGGTGCTTCTTCCTTATCTTTAATC 57.733 37.037 0.00 0.00 35.51 1.75
1804 2228 7.866870 AGGTGCTTCTTCCTTATCTTTAATCT 58.133 34.615 0.00 0.00 0.00 2.40
1805 2229 8.332487 AGGTGCTTCTTCCTTATCTTTAATCTT 58.668 33.333 0.00 0.00 0.00 2.40
1806 2230 8.961634 GGTGCTTCTTCCTTATCTTTAATCTTT 58.038 33.333 0.00 0.00 0.00 2.52
1847 2271 9.687210 AATAAAGTAAATTGGGTTTCTTTCGTC 57.313 29.630 0.00 0.00 33.40 4.20
1848 2272 5.700722 AGTAAATTGGGTTTCTTTCGTCC 57.299 39.130 0.00 0.00 0.00 4.79
1849 2273 3.636282 AAATTGGGTTTCTTTCGTCCG 57.364 42.857 0.00 0.00 0.00 4.79
1850 2274 2.265589 ATTGGGTTTCTTTCGTCCGT 57.734 45.000 0.00 0.00 0.00 4.69
1851 2275 1.585297 TTGGGTTTCTTTCGTCCGTC 58.415 50.000 0.00 0.00 0.00 4.79
1852 2276 0.464870 TGGGTTTCTTTCGTCCGTCA 59.535 50.000 0.00 0.00 0.00 4.35
1853 2277 1.071071 TGGGTTTCTTTCGTCCGTCAT 59.929 47.619 0.00 0.00 0.00 3.06
1854 2278 1.463444 GGGTTTCTTTCGTCCGTCATG 59.537 52.381 0.00 0.00 0.00 3.07
1855 2279 2.409975 GGTTTCTTTCGTCCGTCATGA 58.590 47.619 0.00 0.00 0.00 3.07
1856 2280 2.157085 GGTTTCTTTCGTCCGTCATGAC 59.843 50.000 16.21 16.21 0.00 3.06
1857 2281 2.798283 GTTTCTTTCGTCCGTCATGACA 59.202 45.455 24.93 4.12 34.88 3.58
1858 2282 3.313012 TTCTTTCGTCCGTCATGACAT 57.687 42.857 24.93 0.00 34.88 3.06
1859 2283 3.313012 TCTTTCGTCCGTCATGACATT 57.687 42.857 24.93 0.00 34.88 2.71
1860 2284 3.659786 TCTTTCGTCCGTCATGACATTT 58.340 40.909 24.93 0.00 34.88 2.32
1861 2285 4.062293 TCTTTCGTCCGTCATGACATTTT 58.938 39.130 24.93 0.00 34.88 1.82
1862 2286 4.513692 TCTTTCGTCCGTCATGACATTTTT 59.486 37.500 24.93 0.00 34.88 1.94
1884 2308 8.760980 TTTTTCAGAAAAGTCCCTCTATTTCA 57.239 30.769 8.34 0.00 34.91 2.69
1885 2309 7.986085 TTTCAGAAAAGTCCCTCTATTTCAG 57.014 36.000 0.00 0.00 34.91 3.02
1886 2310 6.935240 TCAGAAAAGTCCCTCTATTTCAGA 57.065 37.500 0.00 0.00 34.91 3.27
1887 2311 6.702329 TCAGAAAAGTCCCTCTATTTCAGAC 58.298 40.000 0.00 0.00 34.91 3.51
1888 2312 6.270000 TCAGAAAAGTCCCTCTATTTCAGACA 59.730 38.462 0.00 0.00 34.91 3.41
1889 2313 6.936900 CAGAAAAGTCCCTCTATTTCAGACAA 59.063 38.462 0.00 0.00 34.91 3.18
1890 2314 7.609532 CAGAAAAGTCCCTCTATTTCAGACAAT 59.390 37.037 0.00 0.00 34.91 2.71
1891 2315 8.166726 AGAAAAGTCCCTCTATTTCAGACAATT 58.833 33.333 0.00 0.00 34.91 2.32
1892 2316 7.929941 AAAGTCCCTCTATTTCAGACAATTC 57.070 36.000 0.00 0.00 0.00 2.17
1893 2317 6.627087 AGTCCCTCTATTTCAGACAATTCA 57.373 37.500 0.00 0.00 0.00 2.57
1894 2318 7.020827 AGTCCCTCTATTTCAGACAATTCAA 57.979 36.000 0.00 0.00 0.00 2.69
1895 2319 6.881602 AGTCCCTCTATTTCAGACAATTCAAC 59.118 38.462 0.00 0.00 0.00 3.18
1896 2320 6.094186 GTCCCTCTATTTCAGACAATTCAACC 59.906 42.308 0.00 0.00 0.00 3.77
1897 2321 5.358160 CCCTCTATTTCAGACAATTCAACCC 59.642 44.000 0.00 0.00 0.00 4.11
1898 2322 5.065218 CCTCTATTTCAGACAATTCAACCCG 59.935 44.000 0.00 0.00 0.00 5.28
1899 2323 3.575965 ATTTCAGACAATTCAACCCGC 57.424 42.857 0.00 0.00 0.00 6.13
1900 2324 1.974265 TTCAGACAATTCAACCCGCA 58.026 45.000 0.00 0.00 0.00 5.69
1901 2325 1.522668 TCAGACAATTCAACCCGCAG 58.477 50.000 0.00 0.00 0.00 5.18
1902 2326 1.202758 TCAGACAATTCAACCCGCAGT 60.203 47.619 0.00 0.00 0.00 4.40
1903 2327 1.197721 CAGACAATTCAACCCGCAGTC 59.802 52.381 0.00 0.00 0.00 3.51
1904 2328 0.521735 GACAATTCAACCCGCAGTCC 59.478 55.000 0.00 0.00 0.00 3.85
1905 2329 0.110486 ACAATTCAACCCGCAGTCCT 59.890 50.000 0.00 0.00 0.00 3.85
1906 2330 0.523072 CAATTCAACCCGCAGTCCTG 59.477 55.000 0.00 0.00 0.00 3.86
1907 2331 0.110486 AATTCAACCCGCAGTCCTGT 59.890 50.000 0.00 0.00 0.00 4.00
1908 2332 0.110486 ATTCAACCCGCAGTCCTGTT 59.890 50.000 0.00 0.00 0.00 3.16
1909 2333 0.106918 TTCAACCCGCAGTCCTGTTT 60.107 50.000 0.00 0.00 0.00 2.83
1910 2334 0.106918 TCAACCCGCAGTCCTGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
1911 2335 1.141254 TCAACCCGCAGTCCTGTTTTA 59.859 47.619 0.00 0.00 0.00 1.52
1912 2336 1.535462 CAACCCGCAGTCCTGTTTTAG 59.465 52.381 0.00 0.00 0.00 1.85
1913 2337 0.763035 ACCCGCAGTCCTGTTTTAGT 59.237 50.000 0.00 0.00 0.00 2.24
1914 2338 1.142262 ACCCGCAGTCCTGTTTTAGTT 59.858 47.619 0.00 0.00 0.00 2.24
1915 2339 2.369532 ACCCGCAGTCCTGTTTTAGTTA 59.630 45.455 0.00 0.00 0.00 2.24
1916 2340 3.181452 ACCCGCAGTCCTGTTTTAGTTAA 60.181 43.478 0.00 0.00 0.00 2.01
1917 2341 3.816523 CCCGCAGTCCTGTTTTAGTTAAA 59.183 43.478 0.00 0.00 0.00 1.52
1918 2342 4.457949 CCCGCAGTCCTGTTTTAGTTAAAT 59.542 41.667 0.00 0.00 0.00 1.40
1919 2343 5.390613 CCGCAGTCCTGTTTTAGTTAAATG 58.609 41.667 0.00 0.00 0.00 2.32
1920 2344 5.180492 CCGCAGTCCTGTTTTAGTTAAATGA 59.820 40.000 0.00 0.00 0.00 2.57
1921 2345 6.293735 CCGCAGTCCTGTTTTAGTTAAATGAA 60.294 38.462 0.00 0.00 0.00 2.57
1922 2346 6.797033 CGCAGTCCTGTTTTAGTTAAATGAAG 59.203 38.462 0.00 0.00 0.00 3.02
1923 2347 6.582672 GCAGTCCTGTTTTAGTTAAATGAAGC 59.417 38.462 0.00 0.00 0.00 3.86
1924 2348 6.797033 CAGTCCTGTTTTAGTTAAATGAAGCG 59.203 38.462 0.00 0.00 0.00 4.68
1925 2349 6.485648 AGTCCTGTTTTAGTTAAATGAAGCGT 59.514 34.615 0.00 0.00 0.00 5.07
1926 2350 7.012989 AGTCCTGTTTTAGTTAAATGAAGCGTT 59.987 33.333 0.00 0.00 0.00 4.84
1927 2351 8.284693 GTCCTGTTTTAGTTAAATGAAGCGTTA 58.715 33.333 0.00 0.00 0.00 3.18
1928 2352 9.005777 TCCTGTTTTAGTTAAATGAAGCGTTAT 57.994 29.630 0.00 0.00 0.00 1.89
1929 2353 9.620660 CCTGTTTTAGTTAAATGAAGCGTTATT 57.379 29.630 0.00 0.00 0.00 1.40
1934 2358 9.881529 TTTAGTTAAATGAAGCGTTATTTTCGT 57.118 25.926 7.62 0.00 0.00 3.85
1957 2381 9.715121 TCGTATTTTATACAAAAGTCCTTGTCT 57.285 29.630 0.00 0.00 40.08 3.41
1965 2389 6.834168 ACAAAAGTCCTTGTCTTTTCTTGA 57.166 33.333 0.00 0.00 41.30 3.02
1966 2390 7.227049 ACAAAAGTCCTTGTCTTTTCTTGAA 57.773 32.000 0.00 0.00 41.30 2.69
1967 2391 7.666623 ACAAAAGTCCTTGTCTTTTCTTGAAA 58.333 30.769 0.00 0.00 41.30 2.69
1968 2392 8.314021 ACAAAAGTCCTTGTCTTTTCTTGAAAT 58.686 29.630 0.00 0.00 41.30 2.17
1969 2393 8.811378 CAAAAGTCCTTGTCTTTTCTTGAAATC 58.189 33.333 0.00 0.00 41.30 2.17
1970 2394 7.645058 AAGTCCTTGTCTTTTCTTGAAATCA 57.355 32.000 0.00 0.00 0.00 2.57
1971 2395 7.645058 AGTCCTTGTCTTTTCTTGAAATCAA 57.355 32.000 0.00 0.00 0.00 2.57
1972 2396 7.484140 AGTCCTTGTCTTTTCTTGAAATCAAC 58.516 34.615 0.00 0.00 0.00 3.18
1973 2397 6.697455 GTCCTTGTCTTTTCTTGAAATCAACC 59.303 38.462 0.00 0.00 0.00 3.77
1974 2398 5.985530 CCTTGTCTTTTCTTGAAATCAACCC 59.014 40.000 0.00 0.00 0.00 4.11
1975 2399 5.181690 TGTCTTTTCTTGAAATCAACCCG 57.818 39.130 0.00 0.00 0.00 5.28
1976 2400 3.981416 GTCTTTTCTTGAAATCAACCCGC 59.019 43.478 0.00 0.00 0.00 6.13
1977 2401 3.005367 TCTTTTCTTGAAATCAACCCGCC 59.995 43.478 0.00 0.00 0.00 6.13
1978 2402 0.878416 TTCTTGAAATCAACCCGCCG 59.122 50.000 0.00 0.00 0.00 6.46
1979 2403 0.250553 TCTTGAAATCAACCCGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
1980 2404 0.168128 CTTGAAATCAACCCGCCGTC 59.832 55.000 0.00 0.00 0.00 4.79
1981 2405 1.238625 TTGAAATCAACCCGCCGTCC 61.239 55.000 0.00 0.00 0.00 4.79
1982 2406 2.744709 AAATCAACCCGCCGTCCG 60.745 61.111 0.00 0.00 0.00 4.79
1991 2415 4.507879 CGCCGTCCGGATTTAAGT 57.492 55.556 7.81 0.00 37.50 2.24
1992 2416 2.294728 CGCCGTCCGGATTTAAGTC 58.705 57.895 7.81 0.00 37.50 3.01
1993 2417 0.458889 CGCCGTCCGGATTTAAGTCA 60.459 55.000 7.81 0.00 37.50 3.41
1994 2418 1.004595 GCCGTCCGGATTTAAGTCAC 58.995 55.000 7.81 0.00 37.50 3.67
1995 2419 1.673626 GCCGTCCGGATTTAAGTCACA 60.674 52.381 7.81 0.00 37.50 3.58
1996 2420 1.997606 CCGTCCGGATTTAAGTCACAC 59.002 52.381 7.81 0.00 37.50 3.82
1997 2421 1.997606 CGTCCGGATTTAAGTCACACC 59.002 52.381 7.81 0.00 0.00 4.16
1998 2422 2.353323 GTCCGGATTTAAGTCACACCC 58.647 52.381 7.81 0.00 0.00 4.61
1999 2423 1.066716 TCCGGATTTAAGTCACACCCG 60.067 52.381 0.00 0.00 35.68 5.28
2000 2424 1.066716 CCGGATTTAAGTCACACCCGA 60.067 52.381 0.00 0.00 37.87 5.14
2001 2425 2.613474 CCGGATTTAAGTCACACCCGAA 60.613 50.000 0.00 0.00 37.87 4.30
2002 2426 2.414138 CGGATTTAAGTCACACCCGAAC 59.586 50.000 0.03 0.00 37.87 3.95
2003 2427 2.745821 GGATTTAAGTCACACCCGAACC 59.254 50.000 0.03 0.00 0.00 3.62
2004 2428 1.868469 TTTAAGTCACACCCGAACCG 58.132 50.000 0.00 0.00 0.00 4.44
2005 2429 0.752054 TTAAGTCACACCCGAACCGT 59.248 50.000 0.00 0.00 0.00 4.83
2006 2430 0.752054 TAAGTCACACCCGAACCGTT 59.248 50.000 0.00 0.00 0.00 4.44
2007 2431 0.752054 AAGTCACACCCGAACCGTTA 59.248 50.000 0.00 0.00 0.00 3.18
2008 2432 0.971386 AGTCACACCCGAACCGTTAT 59.029 50.000 0.00 0.00 0.00 1.89
2009 2433 1.345415 AGTCACACCCGAACCGTTATT 59.655 47.619 0.00 0.00 0.00 1.40
2010 2434 2.145536 GTCACACCCGAACCGTTATTT 58.854 47.619 0.00 0.00 0.00 1.40
2011 2435 2.549329 GTCACACCCGAACCGTTATTTT 59.451 45.455 0.00 0.00 0.00 1.82
2012 2436 3.745458 GTCACACCCGAACCGTTATTTTA 59.255 43.478 0.00 0.00 0.00 1.52
2013 2437 3.745458 TCACACCCGAACCGTTATTTTAC 59.255 43.478 0.00 0.00 0.00 2.01
2014 2438 3.497640 CACACCCGAACCGTTATTTTACA 59.502 43.478 0.00 0.00 0.00 2.41
2015 2439 4.154556 CACACCCGAACCGTTATTTTACAT 59.845 41.667 0.00 0.00 0.00 2.29
2016 2440 4.761227 ACACCCGAACCGTTATTTTACATT 59.239 37.500 0.00 0.00 0.00 2.71
2017 2441 5.241285 ACACCCGAACCGTTATTTTACATTT 59.759 36.000 0.00 0.00 0.00 2.32
2018 2442 6.151004 CACCCGAACCGTTATTTTACATTTT 58.849 36.000 0.00 0.00 0.00 1.82
2019 2443 6.641723 CACCCGAACCGTTATTTTACATTTTT 59.358 34.615 0.00 0.00 0.00 1.94
2020 2444 6.862608 ACCCGAACCGTTATTTTACATTTTTC 59.137 34.615 0.00 0.00 0.00 2.29
2021 2445 6.032670 CCCGAACCGTTATTTTACATTTTTCG 59.967 38.462 0.00 0.00 33.62 3.46
2022 2446 6.796072 CCGAACCGTTATTTTACATTTTTCGA 59.204 34.615 0.00 0.00 35.33 3.71
2023 2447 7.323177 CCGAACCGTTATTTTACATTTTTCGAA 59.677 33.333 0.00 0.00 35.33 3.71
2024 2448 8.680261 CGAACCGTTATTTTACATTTTTCGAAA 58.320 29.630 6.47 6.47 35.33 3.46
2025 2449 9.768125 GAACCGTTATTTTACATTTTTCGAAAC 57.232 29.630 10.79 0.00 0.00 2.78
2026 2450 8.284557 ACCGTTATTTTACATTTTTCGAAACC 57.715 30.769 10.79 0.00 0.00 3.27
2027 2451 7.381948 ACCGTTATTTTACATTTTTCGAAACCC 59.618 33.333 10.79 0.00 0.00 4.11
2028 2452 7.148771 CCGTTATTTTACATTTTTCGAAACCCC 60.149 37.037 10.79 0.00 0.00 4.95
2029 2453 7.148771 CGTTATTTTACATTTTTCGAAACCCCC 60.149 37.037 10.79 0.00 0.00 5.40
2049 2473 5.515106 CCCCCTGATGTTTTAGGTAATTCA 58.485 41.667 0.00 0.00 31.99 2.57
2050 2474 6.136155 CCCCCTGATGTTTTAGGTAATTCAT 58.864 40.000 0.00 0.00 31.99 2.57
2051 2475 6.265422 CCCCCTGATGTTTTAGGTAATTCATC 59.735 42.308 0.00 0.00 34.28 2.92
2052 2476 6.265422 CCCCTGATGTTTTAGGTAATTCATCC 59.735 42.308 0.00 0.00 33.20 3.51
2053 2477 6.017109 CCCTGATGTTTTAGGTAATTCATCCG 60.017 42.308 0.00 0.00 33.20 4.18
2054 2478 6.371809 TGATGTTTTAGGTAATTCATCCGC 57.628 37.500 0.00 0.00 33.20 5.54
2055 2479 4.868450 TGTTTTAGGTAATTCATCCGCG 57.132 40.909 0.00 0.00 0.00 6.46
2056 2480 3.623960 TGTTTTAGGTAATTCATCCGCGG 59.376 43.478 22.12 22.12 0.00 6.46
2057 2481 3.823281 TTTAGGTAATTCATCCGCGGA 57.177 42.857 33.12 33.12 0.00 5.54
2058 2482 4.345859 TTTAGGTAATTCATCCGCGGAT 57.654 40.909 34.60 34.60 34.81 4.18
2059 2483 2.457366 AGGTAATTCATCCGCGGATC 57.543 50.000 37.10 23.80 31.62 3.36
2060 2484 1.691976 AGGTAATTCATCCGCGGATCA 59.308 47.619 37.10 24.89 31.62 2.92
2061 2485 2.303022 AGGTAATTCATCCGCGGATCAT 59.697 45.455 37.10 27.22 31.62 2.45
2062 2486 3.513912 AGGTAATTCATCCGCGGATCATA 59.486 43.478 37.10 24.11 31.62 2.15
2063 2487 4.162320 AGGTAATTCATCCGCGGATCATAT 59.838 41.667 37.10 25.16 31.62 1.78
2064 2488 4.876107 GGTAATTCATCCGCGGATCATATT 59.124 41.667 37.10 31.30 31.62 1.28
2065 2489 5.354234 GGTAATTCATCCGCGGATCATATTT 59.646 40.000 37.10 25.24 31.62 1.40
2066 2490 6.537301 GGTAATTCATCCGCGGATCATATTTA 59.463 38.462 37.10 24.37 31.62 1.40
2067 2491 7.065324 GGTAATTCATCCGCGGATCATATTTAA 59.935 37.037 37.10 20.67 31.62 1.52
2068 2492 6.668541 ATTCATCCGCGGATCATATTTAAG 57.331 37.500 37.10 22.01 31.62 1.85
2069 2493 5.147330 TCATCCGCGGATCATATTTAAGT 57.853 39.130 37.10 10.97 31.62 2.24
2070 2494 5.547465 TCATCCGCGGATCATATTTAAGTT 58.453 37.500 37.10 10.74 31.62 2.66
2071 2495 6.693466 TCATCCGCGGATCATATTTAAGTTA 58.307 36.000 37.10 6.02 31.62 2.24
2072 2496 7.156000 TCATCCGCGGATCATATTTAAGTTAA 58.844 34.615 37.10 5.57 31.62 2.01
2073 2497 7.658167 TCATCCGCGGATCATATTTAAGTTAAA 59.342 33.333 37.10 10.39 31.62 1.52
2074 2498 7.181143 TCCGCGGATCATATTTAAGTTAAAC 57.819 36.000 27.28 0.00 0.00 2.01
2075 2499 6.762187 TCCGCGGATCATATTTAAGTTAAACA 59.238 34.615 27.28 0.00 0.00 2.83
2076 2500 7.280428 TCCGCGGATCATATTTAAGTTAAACAA 59.720 33.333 27.28 2.87 0.00 2.83
2077 2501 7.911205 CCGCGGATCATATTTAAGTTAAACAAA 59.089 33.333 24.07 0.52 0.00 2.83
2078 2502 9.445786 CGCGGATCATATTTAAGTTAAACAAAT 57.554 29.630 10.20 2.73 0.00 2.32
2115 2539 9.847224 ATCATCCATATCTTTTAAACCGTAACT 57.153 29.630 0.00 0.00 0.00 2.24
2116 2540 9.675464 TCATCCATATCTTTTAAACCGTAACTT 57.325 29.630 0.00 0.00 0.00 2.66
2117 2541 9.931210 CATCCATATCTTTTAAACCGTAACTTC 57.069 33.333 0.00 0.00 0.00 3.01
2118 2542 8.188531 TCCATATCTTTTAAACCGTAACTTCG 57.811 34.615 0.00 0.00 0.00 3.79
2119 2543 8.034215 TCCATATCTTTTAAACCGTAACTTCGA 58.966 33.333 0.00 0.00 0.00 3.71
2120 2544 8.823818 CCATATCTTTTAAACCGTAACTTCGAT 58.176 33.333 0.00 0.00 0.00 3.59
2123 2547 8.944212 ATCTTTTAAACCGTAACTTCGATTTG 57.056 30.769 0.00 0.00 29.05 2.32
2124 2548 8.140677 TCTTTTAAACCGTAACTTCGATTTGA 57.859 30.769 0.00 0.00 29.05 2.69
2125 2549 8.610896 TCTTTTAAACCGTAACTTCGATTTGAA 58.389 29.630 0.00 0.00 29.05 2.69
2126 2550 8.545749 TTTTAAACCGTAACTTCGATTTGAAC 57.454 30.769 0.00 0.00 29.05 3.18
2127 2551 5.738118 AAACCGTAACTTCGATTTGAACA 57.262 34.783 0.00 0.00 31.87 3.18
2128 2552 5.934935 AACCGTAACTTCGATTTGAACAT 57.065 34.783 0.00 0.00 31.87 2.71
2129 2553 5.277601 ACCGTAACTTCGATTTGAACATG 57.722 39.130 0.00 0.00 31.87 3.21
2130 2554 4.753107 ACCGTAACTTCGATTTGAACATGT 59.247 37.500 0.00 0.00 31.87 3.21
2131 2555 5.237779 ACCGTAACTTCGATTTGAACATGTT 59.762 36.000 11.78 11.78 31.87 2.71
2132 2556 6.424509 ACCGTAACTTCGATTTGAACATGTTA 59.575 34.615 11.95 0.00 31.87 2.41
2133 2557 7.118680 ACCGTAACTTCGATTTGAACATGTTAT 59.881 33.333 11.95 0.98 31.46 1.89
2134 2558 8.597227 CCGTAACTTCGATTTGAACATGTTATA 58.403 33.333 11.95 0.57 31.46 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.002600 GTTCTTATTGCCTTCATTTTCCAAAAT 57.997 29.630 0.00 0.00 39.07 1.82
26 27 7.989741 TGTTCTTATTGCCTTCATTTTCCAAAA 59.010 29.630 0.00 0.00 0.00 2.44
27 28 7.504403 TGTTCTTATTGCCTTCATTTTCCAAA 58.496 30.769 0.00 0.00 0.00 3.28
28 29 7.060383 TGTTCTTATTGCCTTCATTTTCCAA 57.940 32.000 0.00 0.00 0.00 3.53
29 30 6.662865 TGTTCTTATTGCCTTCATTTTCCA 57.337 33.333 0.00 0.00 0.00 3.53
30 31 7.154656 ACTTGTTCTTATTGCCTTCATTTTCC 58.845 34.615 0.00 0.00 0.00 3.13
31 32 7.867403 TGACTTGTTCTTATTGCCTTCATTTTC 59.133 33.333 0.00 0.00 0.00 2.29
32 33 7.653311 GTGACTTGTTCTTATTGCCTTCATTTT 59.347 33.333 0.00 0.00 0.00 1.82
33 34 7.147976 GTGACTTGTTCTTATTGCCTTCATTT 58.852 34.615 0.00 0.00 0.00 2.32
34 35 6.265196 TGTGACTTGTTCTTATTGCCTTCATT 59.735 34.615 0.00 0.00 0.00 2.57
35 36 5.769662 TGTGACTTGTTCTTATTGCCTTCAT 59.230 36.000 0.00 0.00 0.00 2.57
36 37 5.129634 TGTGACTTGTTCTTATTGCCTTCA 58.870 37.500 0.00 0.00 0.00 3.02
37 38 5.689383 TGTGACTTGTTCTTATTGCCTTC 57.311 39.130 0.00 0.00 0.00 3.46
38 39 5.827797 TCTTGTGACTTGTTCTTATTGCCTT 59.172 36.000 0.00 0.00 0.00 4.35
39 40 5.376625 TCTTGTGACTTGTTCTTATTGCCT 58.623 37.500 0.00 0.00 0.00 4.75
40 41 5.689383 TCTTGTGACTTGTTCTTATTGCC 57.311 39.130 0.00 0.00 0.00 4.52
41 42 7.985634 TTTTCTTGTGACTTGTTCTTATTGC 57.014 32.000 0.00 0.00 0.00 3.56
42 43 9.352784 TGTTTTTCTTGTGACTTGTTCTTATTG 57.647 29.630 0.00 0.00 0.00 1.90
43 44 9.353999 GTGTTTTTCTTGTGACTTGTTCTTATT 57.646 29.630 0.00 0.00 0.00 1.40
44 45 8.519526 TGTGTTTTTCTTGTGACTTGTTCTTAT 58.480 29.630 0.00 0.00 0.00 1.73
45 46 7.877003 TGTGTTTTTCTTGTGACTTGTTCTTA 58.123 30.769 0.00 0.00 0.00 2.10
46 47 6.744112 TGTGTTTTTCTTGTGACTTGTTCTT 58.256 32.000 0.00 0.00 0.00 2.52
47 48 6.325919 TGTGTTTTTCTTGTGACTTGTTCT 57.674 33.333 0.00 0.00 0.00 3.01
48 49 7.581011 ATTGTGTTTTTCTTGTGACTTGTTC 57.419 32.000 0.00 0.00 0.00 3.18
49 50 8.303876 AGTATTGTGTTTTTCTTGTGACTTGTT 58.696 29.630 0.00 0.00 0.00 2.83
50 51 7.826690 AGTATTGTGTTTTTCTTGTGACTTGT 58.173 30.769 0.00 0.00 0.00 3.16
51 52 8.586273 CAAGTATTGTGTTTTTCTTGTGACTTG 58.414 33.333 0.00 0.00 42.34 3.16
52 53 8.687824 CAAGTATTGTGTTTTTCTTGTGACTT 57.312 30.769 0.00 0.00 42.34 3.01
66 67 8.474831 TGTATGCTACAGTATCAAGTATTGTGT 58.525 33.333 0.00 0.00 39.62 3.72
67 68 8.871686 TGTATGCTACAGTATCAAGTATTGTG 57.128 34.615 0.00 0.00 39.62 3.33
68 69 9.884636 TTTGTATGCTACAGTATCAAGTATTGT 57.115 29.630 0.00 0.00 42.90 2.71
100 101 9.819267 GACTCAGTTGCTAAGGTATTTAGTTAT 57.181 33.333 0.00 0.00 40.77 1.89
101 102 8.809066 TGACTCAGTTGCTAAGGTATTTAGTTA 58.191 33.333 0.00 0.00 40.77 2.24
102 103 7.676947 TGACTCAGTTGCTAAGGTATTTAGTT 58.323 34.615 0.00 0.00 40.77 2.24
103 104 7.241042 TGACTCAGTTGCTAAGGTATTTAGT 57.759 36.000 0.00 0.00 40.77 2.24
104 105 8.547967 TTTGACTCAGTTGCTAAGGTATTTAG 57.452 34.615 0.00 0.00 41.46 1.85
105 106 8.911918 TTTTGACTCAGTTGCTAAGGTATTTA 57.088 30.769 0.00 0.00 0.00 1.40
106 107 7.817418 TTTTGACTCAGTTGCTAAGGTATTT 57.183 32.000 0.00 0.00 0.00 1.40
107 108 9.167311 CTATTTTGACTCAGTTGCTAAGGTATT 57.833 33.333 0.00 0.00 0.00 1.89
108 109 8.540388 TCTATTTTGACTCAGTTGCTAAGGTAT 58.460 33.333 0.00 0.00 0.00 2.73
109 110 7.903145 TCTATTTTGACTCAGTTGCTAAGGTA 58.097 34.615 0.00 0.00 0.00 3.08
110 111 6.769512 TCTATTTTGACTCAGTTGCTAAGGT 58.230 36.000 0.00 0.00 0.00 3.50
111 112 7.201679 CCATCTATTTTGACTCAGTTGCTAAGG 60.202 40.741 0.00 0.00 0.00 2.69
112 113 7.201679 CCCATCTATTTTGACTCAGTTGCTAAG 60.202 40.741 0.00 0.00 0.00 2.18
113 114 6.599244 CCCATCTATTTTGACTCAGTTGCTAA 59.401 38.462 0.00 0.00 0.00 3.09
114 115 6.115446 CCCATCTATTTTGACTCAGTTGCTA 58.885 40.000 0.00 0.00 0.00 3.49
115 116 4.946157 CCCATCTATTTTGACTCAGTTGCT 59.054 41.667 0.00 0.00 0.00 3.91
116 117 4.439289 GCCCATCTATTTTGACTCAGTTGC 60.439 45.833 0.00 0.00 0.00 4.17
117 118 4.201851 CGCCCATCTATTTTGACTCAGTTG 60.202 45.833 0.00 0.00 0.00 3.16
118 119 3.941483 CGCCCATCTATTTTGACTCAGTT 59.059 43.478 0.00 0.00 0.00 3.16
119 120 3.535561 CGCCCATCTATTTTGACTCAGT 58.464 45.455 0.00 0.00 0.00 3.41
120 121 2.289002 GCGCCCATCTATTTTGACTCAG 59.711 50.000 0.00 0.00 0.00 3.35
121 122 2.288666 GCGCCCATCTATTTTGACTCA 58.711 47.619 0.00 0.00 0.00 3.41
122 123 2.288666 TGCGCCCATCTATTTTGACTC 58.711 47.619 4.18 0.00 0.00 3.36
123 124 2.292267 CTGCGCCCATCTATTTTGACT 58.708 47.619 4.18 0.00 0.00 3.41
124 125 1.268743 GCTGCGCCCATCTATTTTGAC 60.269 52.381 4.18 0.00 0.00 3.18
125 126 1.024271 GCTGCGCCCATCTATTTTGA 58.976 50.000 4.18 0.00 0.00 2.69
126 127 0.740149 TGCTGCGCCCATCTATTTTG 59.260 50.000 4.18 0.00 0.00 2.44
127 128 1.134946 GTTGCTGCGCCCATCTATTTT 59.865 47.619 4.18 0.00 0.00 1.82
128 129 0.740737 GTTGCTGCGCCCATCTATTT 59.259 50.000 4.18 0.00 0.00 1.40
129 130 1.439353 CGTTGCTGCGCCCATCTATT 61.439 55.000 4.18 0.00 0.00 1.73
130 131 1.889105 CGTTGCTGCGCCCATCTAT 60.889 57.895 4.18 0.00 0.00 1.98
131 132 2.511373 CGTTGCTGCGCCCATCTA 60.511 61.111 4.18 0.00 0.00 1.98
140 141 2.802667 ATCGATGACGCGTTGCTGC 61.803 57.895 15.53 0.00 39.58 5.25
141 142 1.012998 CATCGATGACGCGTTGCTG 60.013 57.895 21.02 4.52 39.58 4.41
142 143 0.528466 ATCATCGATGACGCGTTGCT 60.528 50.000 29.49 9.12 40.03 3.91
143 144 0.111530 GATCATCGATGACGCGTTGC 60.112 55.000 29.49 0.97 40.03 4.17
144 145 1.481240 AGATCATCGATGACGCGTTG 58.519 50.000 29.49 6.61 40.03 4.10
145 146 2.290916 ACTAGATCATCGATGACGCGTT 59.709 45.455 29.49 14.11 40.03 4.84
146 147 1.874231 ACTAGATCATCGATGACGCGT 59.126 47.619 29.49 13.85 40.03 6.01
147 148 2.603224 ACTAGATCATCGATGACGCG 57.397 50.000 29.49 19.14 40.03 6.01
148 149 3.423536 CACAACTAGATCATCGATGACGC 59.576 47.826 29.49 22.84 40.03 5.19
149 150 4.848757 TCACAACTAGATCATCGATGACG 58.151 43.478 29.49 19.14 40.03 4.35
150 151 5.009110 TCCTCACAACTAGATCATCGATGAC 59.991 44.000 29.49 21.48 40.03 3.06
151 152 5.133221 TCCTCACAACTAGATCATCGATGA 58.867 41.667 29.09 29.09 41.70 2.92
152 153 5.444663 TCCTCACAACTAGATCATCGATG 57.555 43.478 19.61 19.61 0.00 3.84
153 154 5.830457 TCTTCCTCACAACTAGATCATCGAT 59.170 40.000 0.00 0.00 0.00 3.59
154 155 5.193679 TCTTCCTCACAACTAGATCATCGA 58.806 41.667 0.00 0.00 0.00 3.59
155 156 5.506686 TCTTCCTCACAACTAGATCATCG 57.493 43.478 0.00 0.00 0.00 3.84
156 157 5.596361 TCCTCTTCCTCACAACTAGATCATC 59.404 44.000 0.00 0.00 0.00 2.92
157 158 5.523588 TCCTCTTCCTCACAACTAGATCAT 58.476 41.667 0.00 0.00 0.00 2.45
158 159 4.935578 TCCTCTTCCTCACAACTAGATCA 58.064 43.478 0.00 0.00 0.00 2.92
159 160 5.067283 GTCTCCTCTTCCTCACAACTAGATC 59.933 48.000 0.00 0.00 0.00 2.75
160 161 4.953579 GTCTCCTCTTCCTCACAACTAGAT 59.046 45.833 0.00 0.00 0.00 1.98
161 162 4.337145 GTCTCCTCTTCCTCACAACTAGA 58.663 47.826 0.00 0.00 0.00 2.43
162 163 3.445805 GGTCTCCTCTTCCTCACAACTAG 59.554 52.174 0.00 0.00 0.00 2.57
163 164 3.432378 GGTCTCCTCTTCCTCACAACTA 58.568 50.000 0.00 0.00 0.00 2.24
164 165 2.252714 GGTCTCCTCTTCCTCACAACT 58.747 52.381 0.00 0.00 0.00 3.16
165 166 1.067495 CGGTCTCCTCTTCCTCACAAC 60.067 57.143 0.00 0.00 0.00 3.32
166 167 1.203013 TCGGTCTCCTCTTCCTCACAA 60.203 52.381 0.00 0.00 0.00 3.33
167 168 0.404426 TCGGTCTCCTCTTCCTCACA 59.596 55.000 0.00 0.00 0.00 3.58
168 169 1.099689 CTCGGTCTCCTCTTCCTCAC 58.900 60.000 0.00 0.00 0.00 3.51
169 170 0.992695 TCTCGGTCTCCTCTTCCTCA 59.007 55.000 0.00 0.00 0.00 3.86
170 171 1.064979 AGTCTCGGTCTCCTCTTCCTC 60.065 57.143 0.00 0.00 0.00 3.71
176 177 1.381165 GGCTGAGTCTCGGTCTCCTC 61.381 65.000 10.43 0.00 0.00 3.71
231 235 5.552472 GCGTGTACGTGTGTTTTATATACGG 60.552 44.000 0.00 0.00 42.22 4.02
252 256 7.241376 GTGTGCTTTATTTATTTACAGAGCGT 58.759 34.615 0.00 0.00 0.00 5.07
254 258 7.241376 ACGTGTGCTTTATTTATTTACAGAGC 58.759 34.615 0.00 0.00 0.00 4.09
270 274 5.544650 ACCTGTAAATTAGTACGTGTGCTT 58.455 37.500 0.00 0.00 0.00 3.91
272 276 6.808212 TCTTACCTGTAAATTAGTACGTGTGC 59.192 38.462 0.00 0.00 0.00 4.57
291 300 7.065085 GGAAACCTAAGATTTACGGTTCTTACC 59.935 40.741 0.00 0.00 38.72 2.85
318 327 2.480419 CCTCTTTTGGCAGTACGTCAAG 59.520 50.000 0.00 0.00 41.13 3.02
319 328 2.489971 CCTCTTTTGGCAGTACGTCAA 58.510 47.619 0.00 1.50 37.47 3.18
320 329 2.163818 CCTCTTTTGGCAGTACGTCA 57.836 50.000 0.00 0.00 0.00 4.35
355 364 3.986006 GCCCTCGACCGTGTCACA 61.986 66.667 3.42 0.00 32.09 3.58
388 397 2.508526 ACATGTCAAGGGAAACAGAGC 58.491 47.619 0.00 0.00 0.00 4.09
442 452 1.066430 GGAACAACGTATCCAGCCAGA 60.066 52.381 9.41 0.00 35.71 3.86
464 478 3.560896 TGGTTACACGAAACTAAAGTGGC 59.439 43.478 0.00 0.00 39.95 5.01
505 538 2.125106 GCCGTTAGGTGGAGCTGG 60.125 66.667 0.00 0.00 40.50 4.85
535 568 4.147321 AGTGGACATGCTTTTGAGTTGAT 58.853 39.130 0.00 0.00 0.00 2.57
537 570 3.996150 AGTGGACATGCTTTTGAGTTG 57.004 42.857 0.00 0.00 0.00 3.16
604 638 3.200593 GGAGCCAGATGCACGCTG 61.201 66.667 10.64 10.64 44.83 5.18
736 817 3.044305 GGTGCGTGCAGAGTCACC 61.044 66.667 14.84 14.84 41.66 4.02
759 840 4.083565 GTGTGGGGTAAATTTTGCTCCTA 58.916 43.478 15.95 4.13 36.76 2.94
769 850 1.354101 TGGAGTCGTGTGGGGTAAAT 58.646 50.000 0.00 0.00 0.00 1.40
791 872 2.745821 GTCCGGGAATAAGTTCGCTTTT 59.254 45.455 0.00 0.00 43.09 2.27
833 1051 1.539776 GCGCGTGCTTCTTTGTTTGG 61.540 55.000 15.02 0.00 38.39 3.28
881 1130 0.693049 AGCTGATTTATAGGGCGGGG 59.307 55.000 0.00 0.00 0.00 5.73
952 1216 1.200948 GCTTTCAGATCCAAGTGGTGC 59.799 52.381 0.00 0.00 36.34 5.01
962 1227 1.202009 GCTTGCTCGTGCTTTCAGATC 60.202 52.381 11.19 0.00 40.48 2.75
1019 1316 0.801067 GCTGCTGCTATTGCTGTTGC 60.801 55.000 8.53 8.24 39.81 4.17
1020 1317 0.524414 TGCTGCTGCTATTGCTGTTG 59.476 50.000 17.00 2.95 39.81 3.33
1021 1318 0.809385 CTGCTGCTGCTATTGCTGTT 59.191 50.000 17.00 0.00 39.81 3.16
1022 1319 1.654954 GCTGCTGCTGCTATTGCTGT 61.655 55.000 22.10 0.00 39.81 4.40
1023 1320 1.064296 GCTGCTGCTGCTATTGCTG 59.936 57.895 22.10 0.89 40.48 4.41
1024 1321 0.963856 TTGCTGCTGCTGCTATTGCT 60.964 50.000 27.67 0.00 40.48 3.91
1029 1326 1.239296 CCTTGTTGCTGCTGCTGCTA 61.239 55.000 27.67 19.90 40.48 3.49
1033 1330 0.179009 TTCTCCTTGTTGCTGCTGCT 60.179 50.000 17.00 0.00 40.48 4.24
1202 1502 2.034878 TCACACCATGCTCCTAGCTAG 58.965 52.381 14.20 14.20 42.97 3.42
1203 1503 2.159179 TCACACCATGCTCCTAGCTA 57.841 50.000 0.03 0.00 42.97 3.32
1204 1504 1.504912 ATCACACCATGCTCCTAGCT 58.495 50.000 0.00 0.00 42.97 3.32
1205 1505 2.158842 AGAATCACACCATGCTCCTAGC 60.159 50.000 0.00 0.00 42.82 3.42
1269 1581 4.820173 AGCACACCTAACTAAAACAACTCC 59.180 41.667 0.00 0.00 0.00 3.85
1342 1655 1.674359 TCAGCAAACCTCAAAGCGAA 58.326 45.000 0.00 0.00 0.00 4.70
1363 1676 2.292016 TCGATCAAGGAAGCGAGATCTC 59.708 50.000 13.05 13.05 35.81 2.75
1410 1723 0.463654 TGCAATCTCCGTACATGCCC 60.464 55.000 0.00 0.00 36.20 5.36
1412 1725 1.939974 TCTGCAATCTCCGTACATGC 58.060 50.000 0.00 0.00 37.52 4.06
1441 1757 4.645535 AGAAGCTACAGTGCATTCTGAAA 58.354 39.130 11.03 0.00 38.63 2.69
1483 1799 3.525537 GGAGACGCATCAATCTCAGAAA 58.474 45.455 3.84 0.00 42.73 2.52
1594 1968 2.071778 AGGCAAACTGACAATGTGGT 57.928 45.000 0.00 0.00 0.00 4.16
1821 2245 9.687210 GACGAAAGAAACCCAATTTACTTTATT 57.313 29.630 0.00 0.00 32.50 1.40
1822 2246 8.301720 GGACGAAAGAAACCCAATTTACTTTAT 58.698 33.333 0.00 0.00 32.50 1.40
1823 2247 7.520292 CGGACGAAAGAAACCCAATTTACTTTA 60.520 37.037 0.00 0.00 32.50 1.85
1824 2248 6.509656 GGACGAAAGAAACCCAATTTACTTT 58.490 36.000 0.00 0.00 33.79 2.66
1825 2249 5.278120 CGGACGAAAGAAACCCAATTTACTT 60.278 40.000 0.00 0.00 0.00 2.24
1826 2250 4.214758 CGGACGAAAGAAACCCAATTTACT 59.785 41.667 0.00 0.00 0.00 2.24
1827 2251 4.023792 ACGGACGAAAGAAACCCAATTTAC 60.024 41.667 0.00 0.00 0.00 2.01
1828 2252 4.136051 ACGGACGAAAGAAACCCAATTTA 58.864 39.130 0.00 0.00 0.00 1.40
1829 2253 2.953648 ACGGACGAAAGAAACCCAATTT 59.046 40.909 0.00 0.00 0.00 1.82
1830 2254 2.551032 GACGGACGAAAGAAACCCAATT 59.449 45.455 0.00 0.00 0.00 2.32
1831 2255 2.148768 GACGGACGAAAGAAACCCAAT 58.851 47.619 0.00 0.00 0.00 3.16
1832 2256 1.134461 TGACGGACGAAAGAAACCCAA 60.134 47.619 0.00 0.00 0.00 4.12
1833 2257 0.464870 TGACGGACGAAAGAAACCCA 59.535 50.000 0.00 0.00 0.00 4.51
1834 2258 1.463444 CATGACGGACGAAAGAAACCC 59.537 52.381 0.00 0.00 0.00 4.11
1835 2259 2.157085 GTCATGACGGACGAAAGAAACC 59.843 50.000 10.69 0.00 0.00 3.27
1836 2260 2.798283 TGTCATGACGGACGAAAGAAAC 59.202 45.455 20.54 0.00 40.72 2.78
1837 2261 3.100658 TGTCATGACGGACGAAAGAAA 57.899 42.857 20.54 0.00 40.72 2.52
1838 2262 2.804697 TGTCATGACGGACGAAAGAA 57.195 45.000 20.54 0.00 40.72 2.52
1839 2263 3.313012 AATGTCATGACGGACGAAAGA 57.687 42.857 20.54 0.20 40.72 2.52
1840 2264 4.404507 AAAATGTCATGACGGACGAAAG 57.595 40.909 20.54 0.00 40.72 2.62
1841 2265 4.822036 AAAAATGTCATGACGGACGAAA 57.178 36.364 20.54 1.72 40.72 3.46
1859 2283 8.760980 TGAAATAGAGGGACTTTTCTGAAAAA 57.239 30.769 15.67 0.31 41.55 1.94
1860 2284 8.217799 TCTGAAATAGAGGGACTTTTCTGAAAA 58.782 33.333 14.31 14.31 41.55 2.29
1861 2285 7.661847 GTCTGAAATAGAGGGACTTTTCTGAAA 59.338 37.037 0.00 0.00 41.55 2.69
1862 2286 7.162082 GTCTGAAATAGAGGGACTTTTCTGAA 58.838 38.462 0.00 0.00 41.55 3.02
1863 2287 6.270000 TGTCTGAAATAGAGGGACTTTTCTGA 59.730 38.462 0.00 0.00 41.55 3.27
1864 2288 6.467677 TGTCTGAAATAGAGGGACTTTTCTG 58.532 40.000 0.00 0.00 41.55 3.02
1865 2289 6.688073 TGTCTGAAATAGAGGGACTTTTCT 57.312 37.500 0.00 0.00 41.55 2.52
1866 2290 7.929941 ATTGTCTGAAATAGAGGGACTTTTC 57.070 36.000 0.00 0.00 41.55 2.29
1867 2291 7.944554 TGAATTGTCTGAAATAGAGGGACTTTT 59.055 33.333 0.00 0.00 41.55 2.27
1868 2292 7.461749 TGAATTGTCTGAAATAGAGGGACTTT 58.538 34.615 0.00 0.00 41.55 2.66
1869 2293 7.020827 TGAATTGTCTGAAATAGAGGGACTT 57.979 36.000 0.00 0.00 41.55 3.01
1871 2295 6.094186 GGTTGAATTGTCTGAAATAGAGGGAC 59.906 42.308 0.00 0.00 35.70 4.46
1872 2296 6.180472 GGTTGAATTGTCTGAAATAGAGGGA 58.820 40.000 0.00 0.00 35.70 4.20
1873 2297 5.358160 GGGTTGAATTGTCTGAAATAGAGGG 59.642 44.000 0.00 0.00 35.70 4.30
1874 2298 5.065218 CGGGTTGAATTGTCTGAAATAGAGG 59.935 44.000 0.00 0.00 35.70 3.69
1875 2299 5.447818 GCGGGTTGAATTGTCTGAAATAGAG 60.448 44.000 0.00 0.00 35.70 2.43
1876 2300 4.394920 GCGGGTTGAATTGTCTGAAATAGA 59.605 41.667 0.00 0.00 0.00 1.98
1877 2301 4.155826 TGCGGGTTGAATTGTCTGAAATAG 59.844 41.667 0.00 0.00 0.00 1.73
1878 2302 4.075682 TGCGGGTTGAATTGTCTGAAATA 58.924 39.130 0.00 0.00 0.00 1.40
1879 2303 2.890311 TGCGGGTTGAATTGTCTGAAAT 59.110 40.909 0.00 0.00 0.00 2.17
1880 2304 2.293122 CTGCGGGTTGAATTGTCTGAAA 59.707 45.455 0.00 0.00 0.00 2.69
1881 2305 1.879380 CTGCGGGTTGAATTGTCTGAA 59.121 47.619 0.00 0.00 0.00 3.02
1882 2306 1.202758 ACTGCGGGTTGAATTGTCTGA 60.203 47.619 0.00 0.00 0.00 3.27
1883 2307 1.197721 GACTGCGGGTTGAATTGTCTG 59.802 52.381 0.00 0.00 0.00 3.51
1884 2308 1.523758 GACTGCGGGTTGAATTGTCT 58.476 50.000 0.00 0.00 0.00 3.41
1885 2309 0.521735 GGACTGCGGGTTGAATTGTC 59.478 55.000 0.00 0.00 0.00 3.18
1886 2310 0.110486 AGGACTGCGGGTTGAATTGT 59.890 50.000 0.00 0.00 0.00 2.71
1887 2311 0.523072 CAGGACTGCGGGTTGAATTG 59.477 55.000 0.00 0.00 0.00 2.32
1888 2312 0.110486 ACAGGACTGCGGGTTGAATT 59.890 50.000 0.00 0.00 0.00 2.17
1889 2313 0.110486 AACAGGACTGCGGGTTGAAT 59.890 50.000 0.00 0.00 0.00 2.57
1890 2314 0.106918 AAACAGGACTGCGGGTTGAA 60.107 50.000 0.00 0.00 0.00 2.69
1891 2315 0.106918 AAAACAGGACTGCGGGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
1892 2316 1.535462 CTAAAACAGGACTGCGGGTTG 59.465 52.381 0.00 0.00 0.00 3.77
1893 2317 1.142262 ACTAAAACAGGACTGCGGGTT 59.858 47.619 0.00 0.00 0.00 4.11
1894 2318 0.763035 ACTAAAACAGGACTGCGGGT 59.237 50.000 0.00 0.00 0.00 5.28
1895 2319 1.892209 AACTAAAACAGGACTGCGGG 58.108 50.000 0.00 0.00 0.00 6.13
1896 2320 5.180492 TCATTTAACTAAAACAGGACTGCGG 59.820 40.000 0.00 0.00 0.00 5.69
1897 2321 6.236017 TCATTTAACTAAAACAGGACTGCG 57.764 37.500 0.00 0.00 0.00 5.18
1898 2322 6.582672 GCTTCATTTAACTAAAACAGGACTGC 59.417 38.462 0.00 0.00 0.00 4.40
1899 2323 6.797033 CGCTTCATTTAACTAAAACAGGACTG 59.203 38.462 0.00 0.00 0.00 3.51
1900 2324 6.485648 ACGCTTCATTTAACTAAAACAGGACT 59.514 34.615 0.00 0.00 0.00 3.85
1901 2325 6.665465 ACGCTTCATTTAACTAAAACAGGAC 58.335 36.000 0.00 0.00 0.00 3.85
1902 2326 6.870971 ACGCTTCATTTAACTAAAACAGGA 57.129 33.333 0.00 0.00 0.00 3.86
1903 2327 9.620660 AATAACGCTTCATTTAACTAAAACAGG 57.379 29.630 0.00 0.00 0.00 4.00
1908 2332 9.881529 ACGAAAATAACGCTTCATTTAACTAAA 57.118 25.926 0.00 0.00 0.00 1.85
1931 2355 9.715121 AGACAAGGACTTTTGTATAAAATACGA 57.285 29.630 0.00 0.00 41.15 3.43
1939 2363 9.621629 TCAAGAAAAGACAAGGACTTTTGTATA 57.378 29.630 10.26 0.00 44.20 1.47
1940 2364 8.519799 TCAAGAAAAGACAAGGACTTTTGTAT 57.480 30.769 10.26 0.00 44.20 2.29
1941 2365 7.931578 TCAAGAAAAGACAAGGACTTTTGTA 57.068 32.000 10.26 0.00 44.20 2.41
1942 2366 6.834168 TCAAGAAAAGACAAGGACTTTTGT 57.166 33.333 10.26 4.88 44.20 2.83
1943 2367 8.707938 ATTTCAAGAAAAGACAAGGACTTTTG 57.292 30.769 10.26 0.00 44.20 2.44
1944 2368 8.531146 TGATTTCAAGAAAAGACAAGGACTTTT 58.469 29.630 0.00 0.00 45.95 2.27
1945 2369 8.066612 TGATTTCAAGAAAAGACAAGGACTTT 57.933 30.769 0.00 0.00 38.91 2.66
1946 2370 7.645058 TGATTTCAAGAAAAGACAAGGACTT 57.355 32.000 0.00 0.00 33.56 3.01
1947 2371 7.416777 GGTTGATTTCAAGAAAAGACAAGGACT 60.417 37.037 0.00 0.00 36.39 3.85
1948 2372 6.697455 GGTTGATTTCAAGAAAAGACAAGGAC 59.303 38.462 0.00 0.00 36.39 3.85
1949 2373 6.183360 GGGTTGATTTCAAGAAAAGACAAGGA 60.183 38.462 0.00 0.00 36.39 3.36
1950 2374 5.985530 GGGTTGATTTCAAGAAAAGACAAGG 59.014 40.000 0.00 0.00 36.39 3.61
1951 2375 5.687285 CGGGTTGATTTCAAGAAAAGACAAG 59.313 40.000 0.00 0.00 36.39 3.16
1952 2376 5.587289 CGGGTTGATTTCAAGAAAAGACAA 58.413 37.500 0.00 4.71 36.39 3.18
1953 2377 4.499019 GCGGGTTGATTTCAAGAAAAGACA 60.499 41.667 0.00 0.00 36.39 3.41
1954 2378 3.981416 GCGGGTTGATTTCAAGAAAAGAC 59.019 43.478 0.00 0.00 36.39 3.01
1955 2379 3.005367 GGCGGGTTGATTTCAAGAAAAGA 59.995 43.478 0.00 0.00 36.39 2.52
1956 2380 3.317150 GGCGGGTTGATTTCAAGAAAAG 58.683 45.455 0.00 0.00 36.39 2.27
1957 2381 2.287909 CGGCGGGTTGATTTCAAGAAAA 60.288 45.455 0.00 0.00 36.39 2.29
1958 2382 1.268352 CGGCGGGTTGATTTCAAGAAA 59.732 47.619 0.00 0.00 36.39 2.52
1959 2383 0.878416 CGGCGGGTTGATTTCAAGAA 59.122 50.000 0.00 0.00 36.39 2.52
1960 2384 0.250553 ACGGCGGGTTGATTTCAAGA 60.251 50.000 13.24 0.00 36.39 3.02
1961 2385 0.168128 GACGGCGGGTTGATTTCAAG 59.832 55.000 13.24 0.00 36.39 3.02
1962 2386 1.238625 GGACGGCGGGTTGATTTCAA 61.239 55.000 13.24 0.00 0.00 2.69
1963 2387 1.673009 GGACGGCGGGTTGATTTCA 60.673 57.895 13.24 0.00 0.00 2.69
1964 2388 2.746803 CGGACGGCGGGTTGATTTC 61.747 63.158 13.24 0.00 0.00 2.17
1965 2389 2.744709 CGGACGGCGGGTTGATTT 60.745 61.111 13.24 0.00 0.00 2.17
1966 2390 4.770874 CCGGACGGCGGGTTGATT 62.771 66.667 13.24 0.00 0.00 2.57
1969 2393 2.855880 TAAATCCGGACGGCGGGTTG 62.856 60.000 15.41 0.00 36.04 3.77
1970 2394 2.182732 TTAAATCCGGACGGCGGGTT 62.183 55.000 15.41 3.28 36.04 4.11
1971 2395 2.582734 CTTAAATCCGGACGGCGGGT 62.583 60.000 15.41 0.00 36.04 5.28
1972 2396 1.885850 CTTAAATCCGGACGGCGGG 60.886 63.158 6.12 8.96 35.92 6.13
1973 2397 1.149964 GACTTAAATCCGGACGGCGG 61.150 60.000 6.12 0.00 34.68 6.13
1974 2398 0.458889 TGACTTAAATCCGGACGGCG 60.459 55.000 6.12 4.80 34.68 6.46
1975 2399 1.004595 GTGACTTAAATCCGGACGGC 58.995 55.000 6.12 0.00 34.68 5.68
1976 2400 1.997606 GTGTGACTTAAATCCGGACGG 59.002 52.381 6.12 3.96 0.00 4.79
1977 2401 1.997606 GGTGTGACTTAAATCCGGACG 59.002 52.381 6.12 0.00 0.00 4.79
1978 2402 2.353323 GGGTGTGACTTAAATCCGGAC 58.647 52.381 6.12 0.00 0.00 4.79
1979 2403 1.066716 CGGGTGTGACTTAAATCCGGA 60.067 52.381 6.61 6.61 33.27 5.14
1980 2404 1.066716 TCGGGTGTGACTTAAATCCGG 60.067 52.381 0.00 0.00 36.99 5.14
1981 2405 2.373540 TCGGGTGTGACTTAAATCCG 57.626 50.000 0.00 0.00 37.61 4.18
1982 2406 2.745821 GGTTCGGGTGTGACTTAAATCC 59.254 50.000 0.00 0.00 0.00 3.01
1983 2407 2.414138 CGGTTCGGGTGTGACTTAAATC 59.586 50.000 0.00 0.00 0.00 2.17
1984 2408 2.224354 ACGGTTCGGGTGTGACTTAAAT 60.224 45.455 0.00 0.00 0.00 1.40
1985 2409 1.138661 ACGGTTCGGGTGTGACTTAAA 59.861 47.619 0.00 0.00 0.00 1.52
1986 2410 0.752054 ACGGTTCGGGTGTGACTTAA 59.248 50.000 0.00 0.00 0.00 1.85
1987 2411 0.752054 AACGGTTCGGGTGTGACTTA 59.248 50.000 0.00 0.00 0.00 2.24
1988 2412 0.752054 TAACGGTTCGGGTGTGACTT 59.248 50.000 0.00 0.00 0.00 3.01
1989 2413 0.971386 ATAACGGTTCGGGTGTGACT 59.029 50.000 0.00 0.00 0.00 3.41
1990 2414 1.799544 AATAACGGTTCGGGTGTGAC 58.200 50.000 0.00 0.00 0.00 3.67
1991 2415 2.547299 AAATAACGGTTCGGGTGTGA 57.453 45.000 0.00 0.00 0.00 3.58
1992 2416 3.497640 TGTAAAATAACGGTTCGGGTGTG 59.502 43.478 0.00 0.00 0.00 3.82
1993 2417 3.737850 TGTAAAATAACGGTTCGGGTGT 58.262 40.909 0.00 0.00 0.00 4.16
1994 2418 4.950434 ATGTAAAATAACGGTTCGGGTG 57.050 40.909 0.00 0.00 0.00 4.61
1995 2419 5.963176 AAATGTAAAATAACGGTTCGGGT 57.037 34.783 0.00 0.00 0.00 5.28
1996 2420 6.032670 CGAAAAATGTAAAATAACGGTTCGGG 59.967 38.462 0.00 0.00 32.65 5.14
1997 2421 6.796072 TCGAAAAATGTAAAATAACGGTTCGG 59.204 34.615 0.00 0.00 35.92 4.30
1998 2422 7.763734 TCGAAAAATGTAAAATAACGGTTCG 57.236 32.000 0.00 0.00 36.41 3.95
1999 2423 9.768125 GTTTCGAAAAATGTAAAATAACGGTTC 57.232 29.630 13.10 0.00 0.00 3.62
2000 2424 8.754096 GGTTTCGAAAAATGTAAAATAACGGTT 58.246 29.630 13.10 0.00 0.00 4.44
2001 2425 7.381948 GGGTTTCGAAAAATGTAAAATAACGGT 59.618 33.333 13.10 0.00 0.00 4.83
2002 2426 7.148771 GGGGTTTCGAAAAATGTAAAATAACGG 60.149 37.037 13.10 0.00 0.00 4.44
2003 2427 7.148771 GGGGGTTTCGAAAAATGTAAAATAACG 60.149 37.037 13.10 0.00 0.00 3.18
2004 2428 8.020861 GGGGGTTTCGAAAAATGTAAAATAAC 57.979 34.615 13.10 0.00 0.00 1.89
2026 2450 5.515106 TGAATTACCTAAAACATCAGGGGG 58.485 41.667 0.00 0.00 36.15 5.40
2027 2451 6.265422 GGATGAATTACCTAAAACATCAGGGG 59.735 42.308 0.00 0.00 36.15 4.79
2028 2452 6.017109 CGGATGAATTACCTAAAACATCAGGG 60.017 42.308 0.00 0.00 36.15 4.45
2029 2453 6.513393 GCGGATGAATTACCTAAAACATCAGG 60.513 42.308 0.00 0.00 35.54 3.86
2030 2454 6.430451 GCGGATGAATTACCTAAAACATCAG 58.570 40.000 0.00 0.00 35.54 2.90
2031 2455 5.007234 CGCGGATGAATTACCTAAAACATCA 59.993 40.000 0.00 0.00 35.54 3.07
2032 2456 5.440685 CGCGGATGAATTACCTAAAACATC 58.559 41.667 0.00 0.00 34.37 3.06
2033 2457 4.274950 CCGCGGATGAATTACCTAAAACAT 59.725 41.667 24.07 0.00 0.00 2.71
2034 2458 3.623960 CCGCGGATGAATTACCTAAAACA 59.376 43.478 24.07 0.00 0.00 2.83
2035 2459 3.872771 TCCGCGGATGAATTACCTAAAAC 59.127 43.478 27.28 0.00 0.00 2.43
2036 2460 4.139859 TCCGCGGATGAATTACCTAAAA 57.860 40.909 27.28 0.00 0.00 1.52
2037 2461 3.823281 TCCGCGGATGAATTACCTAAA 57.177 42.857 27.28 0.00 0.00 1.85
2038 2462 3.322541 TGATCCGCGGATGAATTACCTAA 59.677 43.478 43.46 11.52 34.60 2.69
2039 2463 2.894765 TGATCCGCGGATGAATTACCTA 59.105 45.455 43.46 11.76 34.60 3.08
2040 2464 1.691976 TGATCCGCGGATGAATTACCT 59.308 47.619 43.46 19.25 34.60 3.08
2041 2465 2.163818 TGATCCGCGGATGAATTACC 57.836 50.000 43.46 26.73 34.60 2.85
2042 2466 6.422776 AAATATGATCCGCGGATGAATTAC 57.577 37.500 43.46 27.45 34.60 1.89
2043 2467 7.822334 ACTTAAATATGATCCGCGGATGAATTA 59.178 33.333 43.46 28.95 34.60 1.40
2044 2468 6.655003 ACTTAAATATGATCCGCGGATGAATT 59.345 34.615 43.46 31.51 34.60 2.17
2045 2469 6.173339 ACTTAAATATGATCCGCGGATGAAT 58.827 36.000 43.46 33.85 34.60 2.57
2046 2470 5.547465 ACTTAAATATGATCCGCGGATGAA 58.453 37.500 43.46 30.43 34.60 2.57
2047 2471 5.147330 ACTTAAATATGATCCGCGGATGA 57.853 39.130 43.46 36.54 34.60 2.92
2048 2472 5.862924 AACTTAAATATGATCCGCGGATG 57.137 39.130 43.46 26.82 34.60 3.51
2049 2473 7.442969 TGTTTAACTTAAATATGATCCGCGGAT 59.557 33.333 39.64 39.64 37.59 4.18
2050 2474 6.762187 TGTTTAACTTAAATATGATCCGCGGA 59.238 34.615 33.12 33.12 0.00 5.54
2051 2475 6.950545 TGTTTAACTTAAATATGATCCGCGG 58.049 36.000 22.12 22.12 0.00 6.46
2052 2476 8.829514 TTTGTTTAACTTAAATATGATCCGCG 57.170 30.769 0.00 0.00 0.00 6.46
2089 2513 9.847224 AGTTACGGTTTAAAAGATATGGATGAT 57.153 29.630 0.00 0.00 0.00 2.45
2090 2514 9.675464 AAGTTACGGTTTAAAAGATATGGATGA 57.325 29.630 0.00 0.00 0.00 2.92
2091 2515 9.931210 GAAGTTACGGTTTAAAAGATATGGATG 57.069 33.333 0.00 0.00 0.00 3.51
2092 2516 8.823818 CGAAGTTACGGTTTAAAAGATATGGAT 58.176 33.333 0.00 0.00 0.00 3.41
2093 2517 8.034215 TCGAAGTTACGGTTTAAAAGATATGGA 58.966 33.333 0.00 0.00 0.00 3.41
2094 2518 8.188531 TCGAAGTTACGGTTTAAAAGATATGG 57.811 34.615 0.00 0.00 0.00 2.74
2098 2522 8.776470 TCAAATCGAAGTTACGGTTTAAAAGAT 58.224 29.630 0.00 0.00 43.23 2.40
2099 2523 8.140677 TCAAATCGAAGTTACGGTTTAAAAGA 57.859 30.769 0.00 0.00 43.23 2.52
2100 2524 8.675888 GTTCAAATCGAAGTTACGGTTTAAAAG 58.324 33.333 0.00 0.00 43.23 2.27
2101 2525 8.180267 TGTTCAAATCGAAGTTACGGTTTAAAA 58.820 29.630 0.00 0.00 43.23 1.52
2102 2526 7.692088 TGTTCAAATCGAAGTTACGGTTTAAA 58.308 30.769 0.00 0.00 43.23 1.52
2103 2527 7.244166 TGTTCAAATCGAAGTTACGGTTTAA 57.756 32.000 0.00 0.00 43.23 1.52
2104 2528 6.841443 TGTTCAAATCGAAGTTACGGTTTA 57.159 33.333 0.00 0.00 43.23 2.01
2105 2529 5.738118 TGTTCAAATCGAAGTTACGGTTT 57.262 34.783 0.00 0.00 45.40 3.27
2106 2530 5.237779 ACATGTTCAAATCGAAGTTACGGTT 59.762 36.000 0.00 0.00 38.26 4.44
2107 2531 4.753107 ACATGTTCAAATCGAAGTTACGGT 59.247 37.500 0.00 0.00 33.09 4.83
2108 2532 5.277601 ACATGTTCAAATCGAAGTTACGG 57.722 39.130 0.00 0.00 33.09 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.