Multiple sequence alignment - TraesCS3B01G386000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G386000 chr3B 100.000 2219 0 0 1 2219 606276926 606274708 0.000000e+00 4098.0
1 TraesCS3B01G386000 chr3B 91.517 389 31 2 69 457 43968513 43968127 3.240000e-148 534.0
2 TraesCS3B01G386000 chr3B 82.250 631 52 22 609 1225 606172339 606171755 7.120000e-135 490.0
3 TraesCS3B01G386000 chr3A 85.218 1468 84 62 558 1948 601346049 601344638 0.000000e+00 1386.0
4 TraesCS3B01G386000 chr3A 79.430 632 54 34 609 1227 601332031 601331463 5.780000e-101 377.0
5 TraesCS3B01G386000 chr3A 90.942 276 18 5 1542 1810 601330745 601330470 4.500000e-97 364.0
6 TraesCS3B01G386000 chr3A 94.037 218 4 4 1960 2173 601343913 601343701 2.750000e-84 322.0
7 TraesCS3B01G386000 chr3A 78.601 243 16 18 1308 1521 601331315 601331080 6.430000e-26 128.0
8 TraesCS3B01G386000 chr3D 86.986 1168 52 33 859 1948 459092196 459091051 0.000000e+00 1223.0
9 TraesCS3B01G386000 chr3D 91.753 388 30 2 67 454 79378098 79377713 2.510000e-149 538.0
10 TraesCS3B01G386000 chr3D 80.583 618 56 29 1305 1881 459087755 459087161 3.410000e-113 418.0
11 TraesCS3B01G386000 chr3D 88.210 229 9 7 1949 2173 459091012 459090798 7.860000e-65 257.0
12 TraesCS3B01G386000 chr3D 82.650 317 24 16 455 740 459092914 459092598 3.660000e-63 252.0
13 TraesCS3B01G386000 chr3D 100.000 46 0 0 2174 2219 459090353 459090308 3.930000e-13 86.1
14 TraesCS3B01G386000 chr2B 92.040 402 31 1 54 455 406085571 406085971 4.140000e-157 564.0
15 TraesCS3B01G386000 chr2B 91.250 400 30 2 59 458 400304814 400305208 6.970000e-150 540.0
16 TraesCS3B01G386000 chr6A 91.771 401 28 4 59 458 405819793 405819397 8.950000e-154 553.0
17 TraesCS3B01G386000 chr5B 92.670 382 26 1 69 450 298795852 298796231 1.160000e-152 549.0
18 TraesCS3B01G386000 chr4D 91.774 389 29 3 67 454 344233007 344232621 2.510000e-149 538.0
19 TraesCS3B01G386000 chr7B 91.000 400 33 2 67 465 711641855 711642252 9.020000e-149 536.0
20 TraesCS3B01G386000 chr7D 90.750 400 32 3 59 458 497317966 497317572 1.510000e-146 529.0
21 TraesCS3B01G386000 chr2D 100.000 31 0 0 2113 2143 125262873 125262903 8.560000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G386000 chr3B 606274708 606276926 2218 True 4098.000000 4098 100.0000 1 2219 1 chr3B.!!$R3 2218
1 TraesCS3B01G386000 chr3B 606171755 606172339 584 True 490.000000 490 82.2500 609 1225 1 chr3B.!!$R2 616
2 TraesCS3B01G386000 chr3A 601343701 601346049 2348 True 854.000000 1386 89.6275 558 2173 2 chr3A.!!$R2 1615
3 TraesCS3B01G386000 chr3A 601330470 601332031 1561 True 289.666667 377 82.9910 609 1810 3 chr3A.!!$R1 1201
4 TraesCS3B01G386000 chr3D 459087161 459092914 5753 True 447.220000 1223 87.6858 455 2219 5 chr3D.!!$R2 1764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 283 0.106967 GCAGATCCTTCCCCACTTCC 60.107 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 2630 0.031043 TTCGTCAACACGTCGGTCAT 59.969 50.0 0.0 0.0 46.76 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.990257 TCGAACTACTATTGTGGTACAGC 58.010 43.478 0.00 0.00 41.80 4.40
25 26 4.460034 TCGAACTACTATTGTGGTACAGCA 59.540 41.667 0.00 0.00 41.80 4.41
26 27 4.798907 CGAACTACTATTGTGGTACAGCAG 59.201 45.833 0.00 0.00 41.80 4.24
27 28 5.392703 CGAACTACTATTGTGGTACAGCAGA 60.393 44.000 0.00 0.00 41.80 4.26
28 29 5.995565 ACTACTATTGTGGTACAGCAGAA 57.004 39.130 0.00 0.00 41.80 3.02
29 30 6.354794 ACTACTATTGTGGTACAGCAGAAA 57.645 37.500 0.00 0.00 41.80 2.52
30 31 6.398918 ACTACTATTGTGGTACAGCAGAAAG 58.601 40.000 0.00 0.00 41.80 2.62
31 32 5.483685 ACTATTGTGGTACAGCAGAAAGA 57.516 39.130 0.00 0.00 41.80 2.52
32 33 5.865085 ACTATTGTGGTACAGCAGAAAGAA 58.135 37.500 0.00 0.00 41.80 2.52
33 34 5.934625 ACTATTGTGGTACAGCAGAAAGAAG 59.065 40.000 0.00 0.00 41.80 2.85
34 35 2.494059 TGTGGTACAGCAGAAAGAAGC 58.506 47.619 0.00 0.00 41.80 3.86
35 36 1.807142 GTGGTACAGCAGAAAGAAGCC 59.193 52.381 0.00 0.00 41.80 4.35
36 37 1.419762 TGGTACAGCAGAAAGAAGCCA 59.580 47.619 0.00 0.00 0.00 4.75
37 38 2.040278 TGGTACAGCAGAAAGAAGCCAT 59.960 45.455 0.00 0.00 0.00 4.40
38 39 2.421424 GGTACAGCAGAAAGAAGCCATG 59.579 50.000 0.00 0.00 0.00 3.66
39 40 2.283145 ACAGCAGAAAGAAGCCATGT 57.717 45.000 0.00 0.00 0.00 3.21
40 41 3.423539 ACAGCAGAAAGAAGCCATGTA 57.576 42.857 0.00 0.00 0.00 2.29
41 42 3.341823 ACAGCAGAAAGAAGCCATGTAG 58.658 45.455 0.00 0.00 0.00 2.74
42 43 3.244700 ACAGCAGAAAGAAGCCATGTAGT 60.245 43.478 0.00 0.00 0.00 2.73
43 44 3.126514 CAGCAGAAAGAAGCCATGTAGTG 59.873 47.826 0.00 0.00 0.00 2.74
44 45 2.159462 GCAGAAAGAAGCCATGTAGTGC 60.159 50.000 0.00 0.00 0.00 4.40
45 46 3.076621 CAGAAAGAAGCCATGTAGTGCA 58.923 45.455 0.00 0.00 0.00 4.57
46 47 3.126514 CAGAAAGAAGCCATGTAGTGCAG 59.873 47.826 0.00 0.00 0.00 4.41
47 48 3.008375 AGAAAGAAGCCATGTAGTGCAGA 59.992 43.478 0.00 0.00 0.00 4.26
48 49 2.687700 AGAAGCCATGTAGTGCAGAG 57.312 50.000 0.00 0.00 0.00 3.35
49 50 1.905215 AGAAGCCATGTAGTGCAGAGT 59.095 47.619 0.00 0.00 0.00 3.24
50 51 3.099905 AGAAGCCATGTAGTGCAGAGTA 58.900 45.455 0.00 0.00 0.00 2.59
51 52 3.708631 AGAAGCCATGTAGTGCAGAGTAT 59.291 43.478 0.00 0.00 0.00 2.12
52 53 4.163078 AGAAGCCATGTAGTGCAGAGTATT 59.837 41.667 0.00 0.00 0.00 1.89
53 54 5.363868 AGAAGCCATGTAGTGCAGAGTATTA 59.636 40.000 0.00 0.00 0.00 0.98
54 55 5.614324 AGCCATGTAGTGCAGAGTATTAA 57.386 39.130 0.00 0.00 0.00 1.40
55 56 6.179906 AGCCATGTAGTGCAGAGTATTAAT 57.820 37.500 0.00 0.00 0.00 1.40
56 57 6.226787 AGCCATGTAGTGCAGAGTATTAATC 58.773 40.000 0.00 0.00 0.00 1.75
57 58 5.991606 GCCATGTAGTGCAGAGTATTAATCA 59.008 40.000 0.00 0.00 0.00 2.57
58 59 6.483307 GCCATGTAGTGCAGAGTATTAATCAA 59.517 38.462 0.00 0.00 0.00 2.57
59 60 7.012327 GCCATGTAGTGCAGAGTATTAATCAAA 59.988 37.037 0.00 0.00 0.00 2.69
60 61 8.892723 CCATGTAGTGCAGAGTATTAATCAAAA 58.107 33.333 0.00 0.00 0.00 2.44
61 62 9.926751 CATGTAGTGCAGAGTATTAATCAAAAG 57.073 33.333 0.00 0.00 0.00 2.27
62 63 8.492673 TGTAGTGCAGAGTATTAATCAAAAGG 57.507 34.615 0.00 0.00 0.00 3.11
63 64 8.318412 TGTAGTGCAGAGTATTAATCAAAAGGA 58.682 33.333 0.00 0.00 0.00 3.36
64 65 7.617041 AGTGCAGAGTATTAATCAAAAGGAC 57.383 36.000 0.00 0.00 0.00 3.85
65 66 7.398024 AGTGCAGAGTATTAATCAAAAGGACT 58.602 34.615 0.00 0.00 0.00 3.85
66 67 7.885399 AGTGCAGAGTATTAATCAAAAGGACTT 59.115 33.333 0.00 0.00 0.00 3.01
67 68 7.965107 GTGCAGAGTATTAATCAAAAGGACTTG 59.035 37.037 0.00 0.00 0.00 3.16
68 69 7.665559 TGCAGAGTATTAATCAAAAGGACTTGT 59.334 33.333 0.00 0.00 0.00 3.16
69 70 8.515414 GCAGAGTATTAATCAAAAGGACTTGTT 58.485 33.333 0.00 0.00 0.00 2.83
72 73 9.626045 GAGTATTAATCAAAAGGACTTGTTTGG 57.374 33.333 0.00 0.00 35.79 3.28
73 74 9.362151 AGTATTAATCAAAAGGACTTGTTTGGA 57.638 29.630 0.00 0.00 35.79 3.53
76 77 5.728637 ATCAAAAGGACTTGTTTGGATCC 57.271 39.130 4.20 4.20 35.79 3.36
77 78 4.541705 TCAAAAGGACTTGTTTGGATCCA 58.458 39.130 11.44 11.44 35.79 3.41
78 79 5.147032 TCAAAAGGACTTGTTTGGATCCAT 58.853 37.500 17.06 0.00 35.79 3.41
79 80 5.010922 TCAAAAGGACTTGTTTGGATCCATG 59.989 40.000 17.06 6.03 35.79 3.66
80 81 3.091633 AGGACTTGTTTGGATCCATGG 57.908 47.619 17.06 4.97 33.33 3.66
81 82 2.102578 GGACTTGTTTGGATCCATGGG 58.897 52.381 17.06 7.17 0.00 4.00
82 83 2.557452 GGACTTGTTTGGATCCATGGGT 60.557 50.000 17.06 3.70 0.00 4.51
83 84 3.165071 GACTTGTTTGGATCCATGGGTT 58.835 45.455 17.06 0.00 0.00 4.11
84 85 4.340617 GACTTGTTTGGATCCATGGGTTA 58.659 43.478 17.06 0.00 0.00 2.85
85 86 4.344104 ACTTGTTTGGATCCATGGGTTAG 58.656 43.478 17.06 10.83 0.00 2.34
86 87 4.044065 ACTTGTTTGGATCCATGGGTTAGA 59.956 41.667 17.06 0.00 0.00 2.10
87 88 4.235079 TGTTTGGATCCATGGGTTAGAG 57.765 45.455 17.06 0.00 0.00 2.43
88 89 3.591527 TGTTTGGATCCATGGGTTAGAGT 59.408 43.478 17.06 0.00 0.00 3.24
89 90 4.044065 TGTTTGGATCCATGGGTTAGAGTT 59.956 41.667 17.06 0.00 0.00 3.01
90 91 5.251932 TGTTTGGATCCATGGGTTAGAGTTA 59.748 40.000 17.06 0.00 0.00 2.24
91 92 5.630415 TTGGATCCATGGGTTAGAGTTAG 57.370 43.478 17.06 0.00 0.00 2.34
92 93 4.631234 TGGATCCATGGGTTAGAGTTAGT 58.369 43.478 11.44 0.00 0.00 2.24
93 94 5.036916 TGGATCCATGGGTTAGAGTTAGTT 58.963 41.667 11.44 0.00 0.00 2.24
94 95 5.491078 TGGATCCATGGGTTAGAGTTAGTTT 59.509 40.000 11.44 0.00 0.00 2.66
95 96 6.011981 TGGATCCATGGGTTAGAGTTAGTTTT 60.012 38.462 11.44 0.00 0.00 2.43
96 97 6.318900 GGATCCATGGGTTAGAGTTAGTTTTG 59.681 42.308 13.02 0.00 0.00 2.44
97 98 5.566469 TCCATGGGTTAGAGTTAGTTTTGG 58.434 41.667 13.02 0.00 0.00 3.28
98 99 5.073965 TCCATGGGTTAGAGTTAGTTTTGGT 59.926 40.000 13.02 0.00 0.00 3.67
99 100 5.773176 CCATGGGTTAGAGTTAGTTTTGGTT 59.227 40.000 2.85 0.00 0.00 3.67
100 101 6.943718 CCATGGGTTAGAGTTAGTTTTGGTTA 59.056 38.462 2.85 0.00 0.00 2.85
101 102 7.120726 CCATGGGTTAGAGTTAGTTTTGGTTAG 59.879 40.741 2.85 0.00 0.00 2.34
102 103 7.140522 TGGGTTAGAGTTAGTTTTGGTTAGT 57.859 36.000 0.00 0.00 0.00 2.24
103 104 7.576403 TGGGTTAGAGTTAGTTTTGGTTAGTT 58.424 34.615 0.00 0.00 0.00 2.24
104 105 8.054572 TGGGTTAGAGTTAGTTTTGGTTAGTTT 58.945 33.333 0.00 0.00 0.00 2.66
105 106 8.347771 GGGTTAGAGTTAGTTTTGGTTAGTTTG 58.652 37.037 0.00 0.00 0.00 2.93
106 107 8.347771 GGTTAGAGTTAGTTTTGGTTAGTTTGG 58.652 37.037 0.00 0.00 0.00 3.28
107 108 9.112725 GTTAGAGTTAGTTTTGGTTAGTTTGGA 57.887 33.333 0.00 0.00 0.00 3.53
108 109 7.563888 AGAGTTAGTTTTGGTTAGTTTGGAC 57.436 36.000 0.00 0.00 0.00 4.02
109 110 7.344134 AGAGTTAGTTTTGGTTAGTTTGGACT 58.656 34.615 0.00 0.00 39.97 3.85
110 111 7.498239 AGAGTTAGTTTTGGTTAGTTTGGACTC 59.502 37.037 0.00 0.00 37.33 3.36
111 112 7.114095 AGTTAGTTTTGGTTAGTTTGGACTCA 58.886 34.615 0.00 0.00 37.33 3.41
112 113 7.612633 AGTTAGTTTTGGTTAGTTTGGACTCAA 59.387 33.333 0.00 0.00 37.33 3.02
113 114 6.203808 AGTTTTGGTTAGTTTGGACTCAAC 57.796 37.500 0.00 0.00 37.33 3.18
114 115 5.949952 AGTTTTGGTTAGTTTGGACTCAACT 59.050 36.000 0.00 0.00 37.33 3.16
115 116 7.114095 AGTTTTGGTTAGTTTGGACTCAACTA 58.886 34.615 0.00 0.00 37.33 2.24
116 117 7.612633 AGTTTTGGTTAGTTTGGACTCAACTAA 59.387 33.333 1.91 1.91 37.33 2.24
117 118 6.930667 TTGGTTAGTTTGGACTCAACTAAC 57.069 37.500 20.27 20.27 40.96 2.34
118 119 5.936686 GGTTAGTTTGGACTCAACTAACC 57.063 43.478 27.02 27.02 45.82 2.85
119 120 4.758674 GGTTAGTTTGGACTCAACTAACCC 59.241 45.833 28.96 18.18 45.94 4.11
120 121 5.370679 GTTAGTTTGGACTCAACTAACCCA 58.629 41.667 18.70 0.00 38.97 4.51
121 122 4.513406 AGTTTGGACTCAACTAACCCAA 57.487 40.909 0.00 0.00 35.33 4.12
122 123 4.862371 AGTTTGGACTCAACTAACCCAAA 58.138 39.130 0.00 0.00 42.53 3.28
123 124 5.265989 AGTTTGGACTCAACTAACCCAAAA 58.734 37.500 0.00 0.00 45.12 2.44
124 125 5.359860 AGTTTGGACTCAACTAACCCAAAAG 59.640 40.000 0.00 0.00 45.12 2.27
125 126 4.513406 TGGACTCAACTAACCCAAAAGT 57.487 40.909 0.00 0.00 0.00 2.66
126 127 5.633655 TGGACTCAACTAACCCAAAAGTA 57.366 39.130 0.00 0.00 0.00 2.24
127 128 6.195600 TGGACTCAACTAACCCAAAAGTAT 57.804 37.500 0.00 0.00 0.00 2.12
128 129 6.235664 TGGACTCAACTAACCCAAAAGTATC 58.764 40.000 0.00 0.00 0.00 2.24
129 130 5.646793 GGACTCAACTAACCCAAAAGTATCC 59.353 44.000 0.00 0.00 0.00 2.59
130 131 6.195600 ACTCAACTAACCCAAAAGTATCCA 57.804 37.500 0.00 0.00 0.00 3.41
131 132 6.607019 ACTCAACTAACCCAAAAGTATCCAA 58.393 36.000 0.00 0.00 0.00 3.53
132 133 7.064229 ACTCAACTAACCCAAAAGTATCCAAA 58.936 34.615 0.00 0.00 0.00 3.28
133 134 7.013942 ACTCAACTAACCCAAAAGTATCCAAAC 59.986 37.037 0.00 0.00 0.00 2.93
134 135 6.834451 TCAACTAACCCAAAAGTATCCAAACA 59.166 34.615 0.00 0.00 0.00 2.83
135 136 6.894339 ACTAACCCAAAAGTATCCAAACAG 57.106 37.500 0.00 0.00 0.00 3.16
136 137 5.773176 ACTAACCCAAAAGTATCCAAACAGG 59.227 40.000 0.00 0.00 39.47 4.00
148 149 3.827722 TCCAAACAGGAGGGTTAGTTTG 58.172 45.455 9.27 9.27 46.23 2.93
150 151 2.890945 CAAACAGGAGGGTTAGTTTGGG 59.109 50.000 8.55 0.00 44.17 4.12
151 152 1.829138 ACAGGAGGGTTAGTTTGGGT 58.171 50.000 0.00 0.00 0.00 4.51
152 153 2.141067 ACAGGAGGGTTAGTTTGGGTT 58.859 47.619 0.00 0.00 0.00 4.11
153 154 3.329277 ACAGGAGGGTTAGTTTGGGTTA 58.671 45.455 0.00 0.00 0.00 2.85
154 155 3.329814 ACAGGAGGGTTAGTTTGGGTTAG 59.670 47.826 0.00 0.00 0.00 2.34
155 156 3.585732 CAGGAGGGTTAGTTTGGGTTAGA 59.414 47.826 0.00 0.00 0.00 2.10
156 157 4.227527 CAGGAGGGTTAGTTTGGGTTAGAT 59.772 45.833 0.00 0.00 0.00 1.98
157 158 4.227527 AGGAGGGTTAGTTTGGGTTAGATG 59.772 45.833 0.00 0.00 0.00 2.90
158 159 3.945921 GAGGGTTAGTTTGGGTTAGATGC 59.054 47.826 0.00 0.00 0.00 3.91
159 160 3.332485 AGGGTTAGTTTGGGTTAGATGCA 59.668 43.478 0.00 0.00 0.00 3.96
160 161 4.017499 AGGGTTAGTTTGGGTTAGATGCAT 60.017 41.667 0.00 0.00 0.00 3.96
161 162 4.338400 GGGTTAGTTTGGGTTAGATGCATC 59.662 45.833 19.37 19.37 0.00 3.91
162 163 5.193679 GGTTAGTTTGGGTTAGATGCATCT 58.806 41.667 30.85 30.85 40.86 2.90
163 164 6.354130 GGTTAGTTTGGGTTAGATGCATCTA 58.646 40.000 28.69 28.69 38.32 1.98
164 165 6.826741 GGTTAGTTTGGGTTAGATGCATCTAA 59.173 38.462 34.91 34.91 44.63 2.10
195 196 3.739401 AAATCTAACCCACCCAAGAGG 57.261 47.619 0.00 0.00 43.78 3.69
208 209 2.807676 CCAAGAGGTGCTTATTTGGGT 58.192 47.619 0.00 0.00 35.71 4.51
209 210 3.165071 CCAAGAGGTGCTTATTTGGGTT 58.835 45.455 0.00 0.00 35.71 4.11
210 211 4.340617 CCAAGAGGTGCTTATTTGGGTTA 58.659 43.478 0.00 0.00 35.71 2.85
211 212 4.399303 CCAAGAGGTGCTTATTTGGGTTAG 59.601 45.833 0.00 0.00 35.71 2.34
212 213 4.929146 AGAGGTGCTTATTTGGGTTAGT 57.071 40.909 0.00 0.00 0.00 2.24
213 214 5.256806 AGAGGTGCTTATTTGGGTTAGTT 57.743 39.130 0.00 0.00 0.00 2.24
214 215 5.254115 AGAGGTGCTTATTTGGGTTAGTTC 58.746 41.667 0.00 0.00 0.00 3.01
215 216 5.014228 AGAGGTGCTTATTTGGGTTAGTTCT 59.986 40.000 0.00 0.00 0.00 3.01
216 217 5.641155 AGGTGCTTATTTGGGTTAGTTCTT 58.359 37.500 0.00 0.00 0.00 2.52
217 218 5.710567 AGGTGCTTATTTGGGTTAGTTCTTC 59.289 40.000 0.00 0.00 0.00 2.87
218 219 5.710567 GGTGCTTATTTGGGTTAGTTCTTCT 59.289 40.000 0.00 0.00 0.00 2.85
219 220 6.127980 GGTGCTTATTTGGGTTAGTTCTTCTC 60.128 42.308 0.00 0.00 0.00 2.87
220 221 5.944007 TGCTTATTTGGGTTAGTTCTTCTCC 59.056 40.000 0.00 0.00 0.00 3.71
221 222 5.064834 GCTTATTTGGGTTAGTTCTTCTCCG 59.935 44.000 0.00 0.00 0.00 4.63
222 223 3.412237 TTTGGGTTAGTTCTTCTCCGG 57.588 47.619 0.00 0.00 0.00 5.14
223 224 2.314071 TGGGTTAGTTCTTCTCCGGA 57.686 50.000 2.93 2.93 0.00 5.14
224 225 2.176889 TGGGTTAGTTCTTCTCCGGAG 58.823 52.381 26.32 26.32 0.00 4.63
225 226 1.134759 GGGTTAGTTCTTCTCCGGAGC 60.135 57.143 27.39 12.29 0.00 4.70
226 227 1.549170 GGTTAGTTCTTCTCCGGAGCA 59.451 52.381 27.39 15.98 0.00 4.26
227 228 2.608268 GTTAGTTCTTCTCCGGAGCAC 58.392 52.381 27.39 18.59 0.00 4.40
228 229 2.217510 TAGTTCTTCTCCGGAGCACT 57.782 50.000 27.39 23.80 0.00 4.40
229 230 2.217510 AGTTCTTCTCCGGAGCACTA 57.782 50.000 27.39 6.53 0.00 2.74
230 231 2.526432 AGTTCTTCTCCGGAGCACTAA 58.474 47.619 27.39 14.52 0.00 2.24
231 232 2.897969 AGTTCTTCTCCGGAGCACTAAA 59.102 45.455 27.39 14.14 0.00 1.85
232 233 3.323979 AGTTCTTCTCCGGAGCACTAAAA 59.676 43.478 27.39 13.39 0.00 1.52
233 234 4.062991 GTTCTTCTCCGGAGCACTAAAAA 58.937 43.478 27.39 12.65 0.00 1.94
252 253 5.949233 AAAAACACACATTTTTCTCTCGC 57.051 34.783 0.00 0.00 37.21 5.03
253 254 4.900635 AAACACACATTTTTCTCTCGCT 57.099 36.364 0.00 0.00 0.00 4.93
254 255 4.474226 AACACACATTTTTCTCTCGCTC 57.526 40.909 0.00 0.00 0.00 5.03
255 256 3.733337 ACACACATTTTTCTCTCGCTCT 58.267 40.909 0.00 0.00 0.00 4.09
256 257 3.743396 ACACACATTTTTCTCTCGCTCTC 59.257 43.478 0.00 0.00 0.00 3.20
257 258 3.124297 CACACATTTTTCTCTCGCTCTCC 59.876 47.826 0.00 0.00 0.00 3.71
258 259 2.675348 CACATTTTTCTCTCGCTCTCCC 59.325 50.000 0.00 0.00 0.00 4.30
259 260 2.284190 CATTTTTCTCTCGCTCTCCCC 58.716 52.381 0.00 0.00 0.00 4.81
260 261 0.246635 TTTTTCTCTCGCTCTCCCCG 59.753 55.000 0.00 0.00 0.00 5.73
261 262 2.227089 TTTTCTCTCGCTCTCCCCGC 62.227 60.000 0.00 0.00 0.00 6.13
262 263 3.938637 TTCTCTCGCTCTCCCCGCA 62.939 63.158 0.00 0.00 0.00 5.69
263 264 3.898509 CTCTCGCTCTCCCCGCAG 61.899 72.222 0.00 0.00 0.00 5.18
268 269 3.859414 GCTCTCCCCGCAGCAGAT 61.859 66.667 0.00 0.00 35.56 2.90
269 270 2.420890 CTCTCCCCGCAGCAGATC 59.579 66.667 0.00 0.00 0.00 2.75
270 271 3.157252 TCTCCCCGCAGCAGATCC 61.157 66.667 0.00 0.00 0.00 3.36
271 272 3.160047 CTCCCCGCAGCAGATCCT 61.160 66.667 0.00 0.00 0.00 3.24
272 273 2.688666 TCCCCGCAGCAGATCCTT 60.689 61.111 0.00 0.00 0.00 3.36
273 274 2.203126 CCCCGCAGCAGATCCTTC 60.203 66.667 0.00 0.00 0.00 3.46
274 275 2.203126 CCCGCAGCAGATCCTTCC 60.203 66.667 0.00 0.00 0.00 3.46
275 276 2.203126 CCGCAGCAGATCCTTCCC 60.203 66.667 0.00 0.00 0.00 3.97
276 277 2.203126 CGCAGCAGATCCTTCCCC 60.203 66.667 0.00 0.00 0.00 4.81
277 278 3.001514 GCAGCAGATCCTTCCCCA 58.998 61.111 0.00 0.00 0.00 4.96
278 279 1.452833 GCAGCAGATCCTTCCCCAC 60.453 63.158 0.00 0.00 0.00 4.61
279 280 1.919600 GCAGCAGATCCTTCCCCACT 61.920 60.000 0.00 0.00 0.00 4.00
280 281 0.622665 CAGCAGATCCTTCCCCACTT 59.377 55.000 0.00 0.00 0.00 3.16
281 282 0.915364 AGCAGATCCTTCCCCACTTC 59.085 55.000 0.00 0.00 0.00 3.01
282 283 0.106967 GCAGATCCTTCCCCACTTCC 60.107 60.000 0.00 0.00 0.00 3.46
283 284 1.589414 CAGATCCTTCCCCACTTCCT 58.411 55.000 0.00 0.00 0.00 3.36
284 285 1.488393 CAGATCCTTCCCCACTTCCTC 59.512 57.143 0.00 0.00 0.00 3.71
285 286 1.081174 AGATCCTTCCCCACTTCCTCA 59.919 52.381 0.00 0.00 0.00 3.86
286 287 1.916181 GATCCTTCCCCACTTCCTCAA 59.084 52.381 0.00 0.00 0.00 3.02
287 288 1.827792 TCCTTCCCCACTTCCTCAAA 58.172 50.000 0.00 0.00 0.00 2.69
288 289 2.140224 TCCTTCCCCACTTCCTCAAAA 58.860 47.619 0.00 0.00 0.00 2.44
289 290 2.158519 TCCTTCCCCACTTCCTCAAAAC 60.159 50.000 0.00 0.00 0.00 2.43
290 291 2.158460 CCTTCCCCACTTCCTCAAAACT 60.158 50.000 0.00 0.00 0.00 2.66
291 292 3.566351 CTTCCCCACTTCCTCAAAACTT 58.434 45.455 0.00 0.00 0.00 2.66
292 293 3.223674 TCCCCACTTCCTCAAAACTTC 57.776 47.619 0.00 0.00 0.00 3.01
293 294 2.783510 TCCCCACTTCCTCAAAACTTCT 59.216 45.455 0.00 0.00 0.00 2.85
294 295 3.204382 TCCCCACTTCCTCAAAACTTCTT 59.796 43.478 0.00 0.00 0.00 2.52
295 296 3.319122 CCCCACTTCCTCAAAACTTCTTG 59.681 47.826 0.00 0.00 0.00 3.02
296 297 3.954258 CCCACTTCCTCAAAACTTCTTGT 59.046 43.478 0.00 0.00 0.00 3.16
297 298 4.036852 CCCACTTCCTCAAAACTTCTTGTC 59.963 45.833 0.00 0.00 0.00 3.18
298 299 4.036852 CCACTTCCTCAAAACTTCTTGTCC 59.963 45.833 0.00 0.00 0.00 4.02
299 300 4.884164 CACTTCCTCAAAACTTCTTGTCCT 59.116 41.667 0.00 0.00 0.00 3.85
300 301 5.008118 CACTTCCTCAAAACTTCTTGTCCTC 59.992 44.000 0.00 0.00 0.00 3.71
301 302 5.104318 ACTTCCTCAAAACTTCTTGTCCTCT 60.104 40.000 0.00 0.00 0.00 3.69
302 303 5.373812 TCCTCAAAACTTCTTGTCCTCTT 57.626 39.130 0.00 0.00 0.00 2.85
303 304 5.755849 TCCTCAAAACTTCTTGTCCTCTTT 58.244 37.500 0.00 0.00 0.00 2.52
304 305 5.823045 TCCTCAAAACTTCTTGTCCTCTTTC 59.177 40.000 0.00 0.00 0.00 2.62
305 306 5.825151 CCTCAAAACTTCTTGTCCTCTTTCT 59.175 40.000 0.00 0.00 0.00 2.52
306 307 6.017523 CCTCAAAACTTCTTGTCCTCTTTCTC 60.018 42.308 0.00 0.00 0.00 2.87
307 308 5.823045 TCAAAACTTCTTGTCCTCTTTCTCC 59.177 40.000 0.00 0.00 0.00 3.71
308 309 5.638530 AAACTTCTTGTCCTCTTTCTCCT 57.361 39.130 0.00 0.00 0.00 3.69
309 310 5.638530 AACTTCTTGTCCTCTTTCTCCTT 57.361 39.130 0.00 0.00 0.00 3.36
310 311 5.222079 ACTTCTTGTCCTCTTTCTCCTTC 57.778 43.478 0.00 0.00 0.00 3.46
311 312 4.041075 ACTTCTTGTCCTCTTTCTCCTTCC 59.959 45.833 0.00 0.00 0.00 3.46
312 313 2.907042 TCTTGTCCTCTTTCTCCTTCCC 59.093 50.000 0.00 0.00 0.00 3.97
313 314 2.723530 TGTCCTCTTTCTCCTTCCCT 57.276 50.000 0.00 0.00 0.00 4.20
314 315 2.541466 TGTCCTCTTTCTCCTTCCCTC 58.459 52.381 0.00 0.00 0.00 4.30
315 316 2.112691 TGTCCTCTTTCTCCTTCCCTCT 59.887 50.000 0.00 0.00 0.00 3.69
316 317 2.764010 GTCCTCTTTCTCCTTCCCTCTC 59.236 54.545 0.00 0.00 0.00 3.20
317 318 1.754226 CCTCTTTCTCCTTCCCTCTCG 59.246 57.143 0.00 0.00 0.00 4.04
318 319 1.136110 CTCTTTCTCCTTCCCTCTCGC 59.864 57.143 0.00 0.00 0.00 5.03
319 320 0.898320 CTTTCTCCTTCCCTCTCGCA 59.102 55.000 0.00 0.00 0.00 5.10
320 321 1.276421 CTTTCTCCTTCCCTCTCGCAA 59.724 52.381 0.00 0.00 0.00 4.85
321 322 0.608640 TTCTCCTTCCCTCTCGCAAC 59.391 55.000 0.00 0.00 0.00 4.17
322 323 1.153745 CTCCTTCCCTCTCGCAACG 60.154 63.158 0.00 0.00 0.00 4.10
323 324 1.878656 CTCCTTCCCTCTCGCAACGT 61.879 60.000 0.00 0.00 0.00 3.99
324 325 1.446272 CCTTCCCTCTCGCAACGTC 60.446 63.158 0.00 0.00 0.00 4.34
325 326 1.446272 CTTCCCTCTCGCAACGTCC 60.446 63.158 0.00 0.00 0.00 4.79
326 327 3.277211 TTCCCTCTCGCAACGTCCG 62.277 63.158 0.00 0.00 0.00 4.79
327 328 4.052229 CCCTCTCGCAACGTCCGT 62.052 66.667 8.18 0.00 0.00 4.69
328 329 2.805353 CCTCTCGCAACGTCCGTG 60.805 66.667 8.18 6.42 0.00 4.94
329 330 2.254350 CTCTCGCAACGTCCGTGA 59.746 61.111 11.18 11.18 0.00 4.35
330 331 1.371267 CTCTCGCAACGTCCGTGAA 60.371 57.895 12.28 1.36 0.00 3.18
331 332 1.337817 CTCTCGCAACGTCCGTGAAG 61.338 60.000 12.28 3.31 0.00 3.02
332 333 2.355363 TCGCAACGTCCGTGAAGG 60.355 61.111 8.18 0.00 42.97 3.46
333 334 4.072088 CGCAACGTCCGTGAAGGC 62.072 66.667 0.00 0.00 40.77 4.35
334 335 4.072088 GCAACGTCCGTGAAGGCG 62.072 66.667 0.00 0.67 42.45 5.52
335 336 4.072088 CAACGTCCGTGAAGGCGC 62.072 66.667 0.00 0.00 41.16 6.53
352 353 4.564116 CCTCGCCGTATCCGCGTT 62.564 66.667 4.92 0.00 35.88 4.84
353 354 2.581409 CTCGCCGTATCCGCGTTT 60.581 61.111 4.92 0.00 35.88 3.60
354 355 2.574222 CTCGCCGTATCCGCGTTTC 61.574 63.158 4.92 0.00 35.88 2.78
355 356 2.881827 CGCCGTATCCGCGTTTCA 60.882 61.111 4.92 0.00 0.00 2.69
356 357 2.235016 CGCCGTATCCGCGTTTCAT 61.235 57.895 4.92 0.00 0.00 2.57
357 358 1.563173 GCCGTATCCGCGTTTCATC 59.437 57.895 4.92 0.00 0.00 2.92
358 359 0.874607 GCCGTATCCGCGTTTCATCT 60.875 55.000 4.92 0.00 0.00 2.90
359 360 1.601162 GCCGTATCCGCGTTTCATCTA 60.601 52.381 4.92 0.00 0.00 1.98
360 361 2.734670 CCGTATCCGCGTTTCATCTAA 58.265 47.619 4.92 0.00 0.00 2.10
361 362 2.470257 CCGTATCCGCGTTTCATCTAAC 59.530 50.000 4.92 0.00 0.00 2.34
362 363 2.470257 CGTATCCGCGTTTCATCTAACC 59.530 50.000 4.92 0.00 0.00 2.85
363 364 1.949465 ATCCGCGTTTCATCTAACCC 58.051 50.000 4.92 0.00 0.00 4.11
364 365 0.899720 TCCGCGTTTCATCTAACCCT 59.100 50.000 4.92 0.00 0.00 4.34
365 366 1.006832 CCGCGTTTCATCTAACCCTG 58.993 55.000 4.92 0.00 0.00 4.45
366 367 1.674817 CCGCGTTTCATCTAACCCTGT 60.675 52.381 4.92 0.00 0.00 4.00
367 368 1.659098 CGCGTTTCATCTAACCCTGTC 59.341 52.381 0.00 0.00 0.00 3.51
368 369 2.695359 GCGTTTCATCTAACCCTGTCA 58.305 47.619 0.00 0.00 0.00 3.58
369 370 3.270877 GCGTTTCATCTAACCCTGTCAT 58.729 45.455 0.00 0.00 0.00 3.06
370 371 3.309954 GCGTTTCATCTAACCCTGTCATC 59.690 47.826 0.00 0.00 0.00 2.92
371 372 3.871594 CGTTTCATCTAACCCTGTCATCC 59.128 47.826 0.00 0.00 0.00 3.51
372 373 4.622933 CGTTTCATCTAACCCTGTCATCCA 60.623 45.833 0.00 0.00 0.00 3.41
373 374 5.253330 GTTTCATCTAACCCTGTCATCCAA 58.747 41.667 0.00 0.00 0.00 3.53
374 375 5.512942 TTCATCTAACCCTGTCATCCAAA 57.487 39.130 0.00 0.00 0.00 3.28
375 376 4.843728 TCATCTAACCCTGTCATCCAAAC 58.156 43.478 0.00 0.00 0.00 2.93
376 377 4.288366 TCATCTAACCCTGTCATCCAAACA 59.712 41.667 0.00 0.00 0.00 2.83
377 378 4.927267 TCTAACCCTGTCATCCAAACAT 57.073 40.909 0.00 0.00 0.00 2.71
378 379 4.843728 TCTAACCCTGTCATCCAAACATC 58.156 43.478 0.00 0.00 0.00 3.06
379 380 3.814504 AACCCTGTCATCCAAACATCT 57.185 42.857 0.00 0.00 0.00 2.90
380 381 3.356529 ACCCTGTCATCCAAACATCTC 57.643 47.619 0.00 0.00 0.00 2.75
381 382 2.915604 ACCCTGTCATCCAAACATCTCT 59.084 45.455 0.00 0.00 0.00 3.10
382 383 3.331889 ACCCTGTCATCCAAACATCTCTT 59.668 43.478 0.00 0.00 0.00 2.85
383 384 4.202609 ACCCTGTCATCCAAACATCTCTTT 60.203 41.667 0.00 0.00 0.00 2.52
384 385 4.157289 CCCTGTCATCCAAACATCTCTTTG 59.843 45.833 0.00 0.00 0.00 2.77
386 387 3.507233 TGTCATCCAAACATCTCTTTGGC 59.493 43.478 5.91 0.00 46.88 4.52
387 388 3.760684 GTCATCCAAACATCTCTTTGGCT 59.239 43.478 5.91 0.00 46.88 4.75
388 389 4.943705 GTCATCCAAACATCTCTTTGGCTA 59.056 41.667 5.91 0.00 46.88 3.93
389 390 5.065731 GTCATCCAAACATCTCTTTGGCTAG 59.934 44.000 5.91 0.00 46.88 3.42
390 391 4.908601 TCCAAACATCTCTTTGGCTAGA 57.091 40.909 5.91 0.00 46.88 2.43
391 392 4.836825 TCCAAACATCTCTTTGGCTAGAG 58.163 43.478 9.92 9.92 46.88 2.43
392 393 4.287067 TCCAAACATCTCTTTGGCTAGAGT 59.713 41.667 14.12 3.22 46.88 3.24
393 394 5.006386 CCAAACATCTCTTTGGCTAGAGTT 58.994 41.667 14.12 6.18 42.89 3.01
394 395 6.013725 TCCAAACATCTCTTTGGCTAGAGTTA 60.014 38.462 14.12 0.88 46.88 2.24
395 396 6.655003 CCAAACATCTCTTTGGCTAGAGTTAA 59.345 38.462 14.12 0.31 42.89 2.01
396 397 7.337942 CCAAACATCTCTTTGGCTAGAGTTAAT 59.662 37.037 14.12 2.22 42.89 1.40
397 398 8.734386 CAAACATCTCTTTGGCTAGAGTTAATT 58.266 33.333 14.12 6.33 41.91 1.40
398 399 8.499403 AACATCTCTTTGGCTAGAGTTAATTC 57.501 34.615 14.12 0.00 41.91 2.17
399 400 7.624549 ACATCTCTTTGGCTAGAGTTAATTCA 58.375 34.615 14.12 0.00 41.91 2.57
400 401 7.768120 ACATCTCTTTGGCTAGAGTTAATTCAG 59.232 37.037 14.12 0.00 41.91 3.02
401 402 6.644347 TCTCTTTGGCTAGAGTTAATTCAGG 58.356 40.000 14.12 0.00 41.91 3.86
402 403 5.745227 TCTTTGGCTAGAGTTAATTCAGGG 58.255 41.667 0.00 0.00 0.00 4.45
403 404 5.250774 TCTTTGGCTAGAGTTAATTCAGGGT 59.749 40.000 0.00 0.00 0.00 4.34
404 405 5.514500 TTGGCTAGAGTTAATTCAGGGTT 57.486 39.130 0.00 0.00 0.00 4.11
405 406 6.630203 TTGGCTAGAGTTAATTCAGGGTTA 57.370 37.500 0.00 0.00 0.00 2.85
406 407 6.235231 TGGCTAGAGTTAATTCAGGGTTAG 57.765 41.667 0.00 0.00 0.00 2.34
407 408 5.962031 TGGCTAGAGTTAATTCAGGGTTAGA 59.038 40.000 0.00 0.00 0.00 2.10
408 409 6.442564 TGGCTAGAGTTAATTCAGGGTTAGAA 59.557 38.462 0.00 0.00 0.00 2.10
409 410 7.127339 TGGCTAGAGTTAATTCAGGGTTAGAAT 59.873 37.037 0.00 0.00 37.30 2.40
410 411 7.658167 GGCTAGAGTTAATTCAGGGTTAGAATC 59.342 40.741 0.00 0.00 34.78 2.52
411 412 8.425703 GCTAGAGTTAATTCAGGGTTAGAATCT 58.574 37.037 0.00 0.00 34.78 2.40
431 432 9.403583 AGAATCTAACTCTAACCTCTAACTGAG 57.596 37.037 0.00 0.00 42.30 3.35
432 433 9.181061 GAATCTAACTCTAACCTCTAACTGAGT 57.819 37.037 0.00 0.00 41.11 3.41
433 434 9.536510 AATCTAACTCTAACCTCTAACTGAGTT 57.463 33.333 2.37 2.37 43.96 3.01
447 448 8.645814 TCTAACTGAGTTAGAGTATCCAAACA 57.354 34.615 26.45 4.73 46.18 2.83
448 449 8.740906 TCTAACTGAGTTAGAGTATCCAAACAG 58.259 37.037 26.45 3.66 46.18 3.16
449 450 6.287589 ACTGAGTTAGAGTATCCAAACAGG 57.712 41.667 0.00 0.00 34.84 4.00
492 497 2.032178 ACGAGCTGTTTGTTGAGCTTTC 59.968 45.455 0.00 0.00 45.72 2.62
494 499 2.620585 GAGCTGTTTGTTGAGCTTTCCT 59.379 45.455 0.00 0.00 45.72 3.36
495 500 3.815401 GAGCTGTTTGTTGAGCTTTCCTA 59.185 43.478 0.00 0.00 45.72 2.94
501 506 1.202592 TGTTGAGCTTTCCTACGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
502 507 1.194772 GTTGAGCTTTCCTACGTGCAC 59.805 52.381 6.82 6.82 0.00 4.57
503 508 0.320421 TGAGCTTTCCTACGTGCACC 60.320 55.000 12.15 0.00 0.00 5.01
504 509 1.352156 GAGCTTTCCTACGTGCACCG 61.352 60.000 12.15 9.19 44.03 4.94
506 511 1.740296 CTTTCCTACGTGCACCGGG 60.740 63.158 12.15 10.92 42.24 5.73
526 536 2.041922 CCTCCCATCTCCCACCGA 60.042 66.667 0.00 0.00 0.00 4.69
528 538 1.690219 CCTCCCATCTCCCACCGAAG 61.690 65.000 0.00 0.00 0.00 3.79
566 577 2.754658 CGGCTCTACCTCCACCGT 60.755 66.667 0.00 0.00 39.05 4.83
710 751 4.988598 ACCACGGCCTTGACTGCG 62.989 66.667 11.54 0.00 0.00 5.18
716 757 2.280797 GCCTTGACTGCGTGACCA 60.281 61.111 0.00 0.00 0.00 4.02
717 758 1.672356 GCCTTGACTGCGTGACCAT 60.672 57.895 0.00 0.00 0.00 3.55
718 759 0.391130 GCCTTGACTGCGTGACCATA 60.391 55.000 0.00 0.00 0.00 2.74
746 788 2.224621 CCACACTCCAAGTCCAAGTCAT 60.225 50.000 0.00 0.00 0.00 3.06
787 835 1.152247 TCCTCCTCATCCATCCGGG 60.152 63.158 0.00 0.00 38.37 5.73
857 1216 2.844839 CCCCGTCCATCCCTCCTC 60.845 72.222 0.00 0.00 0.00 3.71
865 1224 1.152440 CATCCCTCCTCGGCTACCT 60.152 63.158 0.00 0.00 0.00 3.08
876 1235 1.087501 CGGCTACCTCTTTTGCTTCC 58.912 55.000 0.00 0.00 0.00 3.46
877 1240 1.339151 CGGCTACCTCTTTTGCTTCCT 60.339 52.381 0.00 0.00 0.00 3.36
917 1280 0.804989 GGTGCCAATTTCGTCCTCAG 59.195 55.000 0.00 0.00 0.00 3.35
925 1288 0.318699 TTTCGTCCTCAGAGCACACG 60.319 55.000 7.99 7.99 0.00 4.49
1148 1536 4.400109 GTCGGTGCTCGTCTGCGA 62.400 66.667 0.00 0.00 45.79 5.10
1149 1537 4.400109 TCGGTGCTCGTCTGCGAC 62.400 66.667 0.00 0.00 42.81 5.19
1335 1811 4.619437 TGTTAAGGTTTGTTCGTGTTCC 57.381 40.909 0.00 0.00 0.00 3.62
1389 1867 3.413861 GTCTCGTGCGTGCATGCA 61.414 61.111 29.30 29.30 43.95 3.96
1409 1896 4.041567 TGCAAGGATAACTTTCACTCCTCA 59.958 41.667 0.00 0.00 37.13 3.86
1446 1943 6.494842 TGTTGTTCTGCTATGTTTTGTTCTC 58.505 36.000 0.00 0.00 0.00 2.87
1532 2337 9.078753 TCTTGTTATATGTAATGTGTGTGTACG 57.921 33.333 0.00 0.00 0.00 3.67
1687 2521 3.119602 CGACAGGCTGCTGTTACTACTTA 60.120 47.826 15.89 0.00 37.74 2.24
1738 2581 3.739401 AGAACTTGGGGAAAGGTATGG 57.261 47.619 0.00 0.00 35.31 2.74
1764 2607 6.371825 GGGTTGTTAAGAAAGATCTCGTGAAT 59.628 38.462 0.00 0.00 33.77 2.57
1769 2612 7.544566 TGTTAAGAAAGATCTCGTGAATGGTAC 59.455 37.037 0.00 0.00 33.77 3.34
1820 2665 4.446385 TGTTGACGAAAAGTAGGAACGATG 59.554 41.667 0.00 0.00 0.00 3.84
1857 2702 8.488764 CAAGCTTATACGTTTAGAATTAGCTCC 58.511 37.037 8.69 0.00 35.57 4.70
1884 2735 6.928492 GGTCCACATGTGTTTCAACATAATTT 59.072 34.615 23.79 0.00 41.59 1.82
1885 2736 8.085296 GGTCCACATGTGTTTCAACATAATTTA 58.915 33.333 23.79 0.00 41.59 1.40
1917 2768 5.991606 TCCGATCTGAATATTTACAAGCCAG 59.008 40.000 0.00 0.00 0.00 4.85
1921 2772 7.011389 CGATCTGAATATTTACAAGCCAGAACA 59.989 37.037 5.24 0.00 33.62 3.18
1934 2785 1.065126 CCAGAACAAGATCTCACCCCC 60.065 57.143 0.00 0.00 0.00 5.40
1937 2788 1.909302 GAACAAGATCTCACCCCCTGA 59.091 52.381 0.00 0.00 0.00 3.86
1991 3555 1.153449 GGGACACGCCATCGATCAA 60.153 57.895 0.00 0.00 38.95 2.57
1992 3556 0.532862 GGGACACGCCATCGATCAAT 60.533 55.000 0.00 0.00 38.95 2.57
1993 3557 0.861837 GGACACGCCATCGATCAATC 59.138 55.000 0.00 0.00 39.41 2.67
2037 3601 1.662608 CTGTGTGCTCTCGGTGACT 59.337 57.895 0.00 0.00 0.00 3.41
2045 3609 1.131504 GCTCTCGGTGACTACTGACAG 59.868 57.143 0.00 0.00 37.28 3.51
2063 3627 1.153628 GCGGCCGATGTACTCACTT 60.154 57.895 33.48 0.00 0.00 3.16
2144 3712 6.243216 AGGACTTAAGTTACAGTTTGTGGA 57.757 37.500 10.02 0.00 0.00 4.02
2145 3713 6.838382 AGGACTTAAGTTACAGTTTGTGGAT 58.162 36.000 10.02 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.040878 GCTGTACCACAATAGTAGTTCGAAT 58.959 40.000 0.00 0.00 0.00 3.34
1 2 5.047872 TGCTGTACCACAATAGTAGTTCGAA 60.048 40.000 0.00 0.00 0.00 3.71
2 3 4.460034 TGCTGTACCACAATAGTAGTTCGA 59.540 41.667 0.00 0.00 0.00 3.71
3 4 4.740268 TGCTGTACCACAATAGTAGTTCG 58.260 43.478 0.00 0.00 0.00 3.95
4 5 5.962433 TCTGCTGTACCACAATAGTAGTTC 58.038 41.667 0.00 0.00 0.00 3.01
5 6 5.995565 TCTGCTGTACCACAATAGTAGTT 57.004 39.130 0.00 0.00 0.00 2.24
6 7 5.995565 TTCTGCTGTACCACAATAGTAGT 57.004 39.130 0.00 0.00 0.00 2.73
7 8 6.631016 TCTTTCTGCTGTACCACAATAGTAG 58.369 40.000 0.00 0.00 0.00 2.57
8 9 6.599356 TCTTTCTGCTGTACCACAATAGTA 57.401 37.500 0.00 0.00 0.00 1.82
9 10 5.483685 TCTTTCTGCTGTACCACAATAGT 57.516 39.130 0.00 0.00 0.00 2.12
10 11 5.163814 GCTTCTTTCTGCTGTACCACAATAG 60.164 44.000 0.00 0.00 0.00 1.73
11 12 4.695455 GCTTCTTTCTGCTGTACCACAATA 59.305 41.667 0.00 0.00 0.00 1.90
12 13 3.503748 GCTTCTTTCTGCTGTACCACAAT 59.496 43.478 0.00 0.00 0.00 2.71
13 14 2.878406 GCTTCTTTCTGCTGTACCACAA 59.122 45.455 0.00 0.00 0.00 3.33
14 15 2.494059 GCTTCTTTCTGCTGTACCACA 58.506 47.619 0.00 0.00 0.00 4.17
15 16 1.807142 GGCTTCTTTCTGCTGTACCAC 59.193 52.381 0.00 0.00 0.00 4.16
16 17 1.419762 TGGCTTCTTTCTGCTGTACCA 59.580 47.619 0.00 0.00 0.00 3.25
17 18 2.185004 TGGCTTCTTTCTGCTGTACC 57.815 50.000 0.00 0.00 0.00 3.34
18 19 3.077359 ACATGGCTTCTTTCTGCTGTAC 58.923 45.455 0.00 0.00 0.00 2.90
19 20 3.423539 ACATGGCTTCTTTCTGCTGTA 57.576 42.857 0.00 0.00 0.00 2.74
20 21 2.283145 ACATGGCTTCTTTCTGCTGT 57.717 45.000 0.00 0.00 0.00 4.40
21 22 3.126514 CACTACATGGCTTCTTTCTGCTG 59.873 47.826 0.00 0.00 0.00 4.41
22 23 3.341823 CACTACATGGCTTCTTTCTGCT 58.658 45.455 0.00 0.00 0.00 4.24
23 24 2.159462 GCACTACATGGCTTCTTTCTGC 60.159 50.000 0.00 0.00 0.00 4.26
24 25 3.076621 TGCACTACATGGCTTCTTTCTG 58.923 45.455 0.00 0.00 0.00 3.02
25 26 3.008375 TCTGCACTACATGGCTTCTTTCT 59.992 43.478 0.00 0.00 0.00 2.52
26 27 3.338249 TCTGCACTACATGGCTTCTTTC 58.662 45.455 0.00 0.00 0.00 2.62
27 28 3.244700 ACTCTGCACTACATGGCTTCTTT 60.245 43.478 0.00 0.00 0.00 2.52
28 29 2.304180 ACTCTGCACTACATGGCTTCTT 59.696 45.455 0.00 0.00 0.00 2.52
29 30 1.905215 ACTCTGCACTACATGGCTTCT 59.095 47.619 0.00 0.00 0.00 2.85
30 31 2.393271 ACTCTGCACTACATGGCTTC 57.607 50.000 0.00 0.00 0.00 3.86
31 32 4.494091 AATACTCTGCACTACATGGCTT 57.506 40.909 0.00 0.00 0.00 4.35
32 33 5.614324 TTAATACTCTGCACTACATGGCT 57.386 39.130 0.00 0.00 0.00 4.75
33 34 5.991606 TGATTAATACTCTGCACTACATGGC 59.008 40.000 0.00 0.00 0.00 4.40
34 35 8.437360 TTTGATTAATACTCTGCACTACATGG 57.563 34.615 0.00 0.00 0.00 3.66
35 36 9.926751 CTTTTGATTAATACTCTGCACTACATG 57.073 33.333 0.00 0.00 0.00 3.21
36 37 9.113838 CCTTTTGATTAATACTCTGCACTACAT 57.886 33.333 0.00 0.00 0.00 2.29
37 38 8.318412 TCCTTTTGATTAATACTCTGCACTACA 58.682 33.333 0.00 0.00 0.00 2.74
38 39 8.604890 GTCCTTTTGATTAATACTCTGCACTAC 58.395 37.037 0.00 0.00 0.00 2.73
39 40 8.540388 AGTCCTTTTGATTAATACTCTGCACTA 58.460 33.333 0.00 0.00 0.00 2.74
40 41 7.398024 AGTCCTTTTGATTAATACTCTGCACT 58.602 34.615 0.00 0.00 0.00 4.40
41 42 7.617041 AGTCCTTTTGATTAATACTCTGCAC 57.383 36.000 0.00 0.00 0.00 4.57
42 43 7.665559 ACAAGTCCTTTTGATTAATACTCTGCA 59.334 33.333 0.00 0.00 0.00 4.41
43 44 8.045176 ACAAGTCCTTTTGATTAATACTCTGC 57.955 34.615 0.00 0.00 0.00 4.26
46 47 9.626045 CCAAACAAGTCCTTTTGATTAATACTC 57.374 33.333 0.00 0.00 35.13 2.59
47 48 9.362151 TCCAAACAAGTCCTTTTGATTAATACT 57.638 29.630 0.00 0.00 35.13 2.12
50 51 8.314021 GGATCCAAACAAGTCCTTTTGATTAAT 58.686 33.333 6.95 0.00 35.13 1.40
51 52 7.288852 TGGATCCAAACAAGTCCTTTTGATTAA 59.711 33.333 13.46 0.00 35.13 1.40
52 53 6.780031 TGGATCCAAACAAGTCCTTTTGATTA 59.220 34.615 13.46 0.00 35.13 1.75
53 54 5.602145 TGGATCCAAACAAGTCCTTTTGATT 59.398 36.000 13.46 0.00 35.13 2.57
54 55 5.147032 TGGATCCAAACAAGTCCTTTTGAT 58.853 37.500 13.46 0.00 35.13 2.57
55 56 4.541705 TGGATCCAAACAAGTCCTTTTGA 58.458 39.130 13.46 0.00 35.13 2.69
56 57 4.935352 TGGATCCAAACAAGTCCTTTTG 57.065 40.909 13.46 0.00 33.30 2.44
57 58 4.284234 CCATGGATCCAAACAAGTCCTTTT 59.716 41.667 20.67 0.00 0.00 2.27
58 59 3.834231 CCATGGATCCAAACAAGTCCTTT 59.166 43.478 20.67 0.00 0.00 3.11
59 60 3.434309 CCATGGATCCAAACAAGTCCTT 58.566 45.455 20.67 0.00 0.00 3.36
60 61 2.291800 CCCATGGATCCAAACAAGTCCT 60.292 50.000 20.67 0.00 0.00 3.85
61 62 2.102578 CCCATGGATCCAAACAAGTCC 58.897 52.381 20.67 0.00 0.00 3.85
62 63 2.807676 ACCCATGGATCCAAACAAGTC 58.192 47.619 20.67 0.00 0.00 3.01
63 64 2.999185 ACCCATGGATCCAAACAAGT 57.001 45.000 20.67 9.37 0.00 3.16
64 65 4.599041 TCTAACCCATGGATCCAAACAAG 58.401 43.478 20.67 11.61 0.00 3.16
65 66 4.044065 ACTCTAACCCATGGATCCAAACAA 59.956 41.667 20.67 1.64 0.00 2.83
66 67 3.591527 ACTCTAACCCATGGATCCAAACA 59.408 43.478 20.67 0.00 0.00 2.83
67 68 4.236527 ACTCTAACCCATGGATCCAAAC 57.763 45.455 20.67 0.00 0.00 2.93
68 69 4.946160 AACTCTAACCCATGGATCCAAA 57.054 40.909 20.67 0.00 0.00 3.28
69 70 5.036916 ACTAACTCTAACCCATGGATCCAA 58.963 41.667 20.67 1.96 0.00 3.53
70 71 4.631234 ACTAACTCTAACCCATGGATCCA 58.369 43.478 18.88 18.88 0.00 3.41
71 72 5.632034 AACTAACTCTAACCCATGGATCC 57.368 43.478 15.22 4.20 0.00 3.36
72 73 6.318900 CCAAAACTAACTCTAACCCATGGATC 59.681 42.308 15.22 0.00 0.00 3.36
73 74 6.187682 CCAAAACTAACTCTAACCCATGGAT 58.812 40.000 15.22 4.04 0.00 3.41
74 75 5.073965 ACCAAAACTAACTCTAACCCATGGA 59.926 40.000 15.22 0.00 0.00 3.41
75 76 5.321927 ACCAAAACTAACTCTAACCCATGG 58.678 41.667 4.14 4.14 0.00 3.66
76 77 6.894339 AACCAAAACTAACTCTAACCCATG 57.106 37.500 0.00 0.00 0.00 3.66
77 78 7.752638 ACTAACCAAAACTAACTCTAACCCAT 58.247 34.615 0.00 0.00 0.00 4.00
78 79 7.140522 ACTAACCAAAACTAACTCTAACCCA 57.859 36.000 0.00 0.00 0.00 4.51
79 80 8.347771 CAAACTAACCAAAACTAACTCTAACCC 58.652 37.037 0.00 0.00 0.00 4.11
80 81 8.347771 CCAAACTAACCAAAACTAACTCTAACC 58.652 37.037 0.00 0.00 0.00 2.85
81 82 9.112725 TCCAAACTAACCAAAACTAACTCTAAC 57.887 33.333 0.00 0.00 0.00 2.34
82 83 9.112725 GTCCAAACTAACCAAAACTAACTCTAA 57.887 33.333 0.00 0.00 0.00 2.10
83 84 8.488668 AGTCCAAACTAACCAAAACTAACTCTA 58.511 33.333 0.00 0.00 32.59 2.43
84 85 7.344134 AGTCCAAACTAACCAAAACTAACTCT 58.656 34.615 0.00 0.00 32.59 3.24
85 86 7.281549 TGAGTCCAAACTAACCAAAACTAACTC 59.718 37.037 0.00 0.00 35.28 3.01
86 87 7.114095 TGAGTCCAAACTAACCAAAACTAACT 58.886 34.615 0.00 0.00 35.28 2.24
87 88 7.324354 TGAGTCCAAACTAACCAAAACTAAC 57.676 36.000 0.00 0.00 35.28 2.34
88 89 7.612633 AGTTGAGTCCAAACTAACCAAAACTAA 59.387 33.333 0.00 0.00 35.28 2.24
89 90 7.114095 AGTTGAGTCCAAACTAACCAAAACTA 58.886 34.615 0.00 0.00 35.28 2.24
90 91 5.949952 AGTTGAGTCCAAACTAACCAAAACT 59.050 36.000 0.00 0.00 35.28 2.66
91 92 6.203808 AGTTGAGTCCAAACTAACCAAAAC 57.796 37.500 0.00 0.00 35.28 2.43
92 93 7.764331 GTTAGTTGAGTCCAAACTAACCAAAA 58.236 34.615 23.39 3.70 38.75 2.44
93 94 7.324354 GTTAGTTGAGTCCAAACTAACCAAA 57.676 36.000 23.39 4.22 38.75 3.28
94 95 6.930667 GTTAGTTGAGTCCAAACTAACCAA 57.069 37.500 23.39 4.49 38.75 3.67
96 97 5.936686 GGTTAGTTGAGTCCAAACTAACC 57.063 43.478 30.41 30.41 45.68 2.85
97 98 5.370679 TGGGTTAGTTGAGTCCAAACTAAC 58.629 41.667 24.68 24.68 40.76 2.34
98 99 5.633655 TGGGTTAGTTGAGTCCAAACTAA 57.366 39.130 10.32 10.32 35.28 2.24
99 100 5.633655 TTGGGTTAGTTGAGTCCAAACTA 57.366 39.130 0.15 0.15 35.28 2.24
100 101 4.513406 TTGGGTTAGTTGAGTCCAAACT 57.487 40.909 1.87 1.87 38.88 2.66
101 102 5.126545 ACTTTTGGGTTAGTTGAGTCCAAAC 59.873 40.000 5.46 0.00 44.18 2.93
102 103 5.265989 ACTTTTGGGTTAGTTGAGTCCAAA 58.734 37.500 0.00 0.00 43.23 3.28
103 104 4.862371 ACTTTTGGGTTAGTTGAGTCCAA 58.138 39.130 0.00 0.00 35.91 3.53
104 105 4.513406 ACTTTTGGGTTAGTTGAGTCCA 57.487 40.909 0.00 0.00 0.00 4.02
105 106 5.646793 GGATACTTTTGGGTTAGTTGAGTCC 59.353 44.000 0.00 0.00 0.00 3.85
106 107 6.235664 TGGATACTTTTGGGTTAGTTGAGTC 58.764 40.000 0.00 0.00 37.61 3.36
107 108 6.195600 TGGATACTTTTGGGTTAGTTGAGT 57.804 37.500 0.00 0.00 37.61 3.41
108 109 7.013846 TGTTTGGATACTTTTGGGTTAGTTGAG 59.986 37.037 0.00 0.00 37.61 3.02
109 110 6.834451 TGTTTGGATACTTTTGGGTTAGTTGA 59.166 34.615 0.00 0.00 37.61 3.18
110 111 7.045126 TGTTTGGATACTTTTGGGTTAGTTG 57.955 36.000 0.00 0.00 37.61 3.16
111 112 6.266786 CCTGTTTGGATACTTTTGGGTTAGTT 59.733 38.462 0.00 0.00 38.35 2.24
112 113 5.773176 CCTGTTTGGATACTTTTGGGTTAGT 59.227 40.000 0.00 0.00 38.35 2.24
113 114 6.007703 TCCTGTTTGGATACTTTTGGGTTAG 58.992 40.000 0.00 0.00 40.56 2.34
114 115 5.954757 TCCTGTTTGGATACTTTTGGGTTA 58.045 37.500 0.00 0.00 40.56 2.85
115 116 4.810345 TCCTGTTTGGATACTTTTGGGTT 58.190 39.130 0.00 0.00 40.56 4.11
116 117 4.407365 CTCCTGTTTGGATACTTTTGGGT 58.593 43.478 0.00 0.00 45.16 4.51
117 118 3.763897 CCTCCTGTTTGGATACTTTTGGG 59.236 47.826 0.00 0.00 45.16 4.12
118 119 3.763897 CCCTCCTGTTTGGATACTTTTGG 59.236 47.826 0.00 0.00 45.16 3.28
119 120 4.407365 ACCCTCCTGTTTGGATACTTTTG 58.593 43.478 0.00 0.00 45.16 2.44
120 121 4.741928 ACCCTCCTGTTTGGATACTTTT 57.258 40.909 0.00 0.00 45.16 2.27
121 122 4.741928 AACCCTCCTGTTTGGATACTTT 57.258 40.909 0.00 0.00 45.16 2.66
122 123 4.850386 ACTAACCCTCCTGTTTGGATACTT 59.150 41.667 0.00 0.00 45.16 2.24
123 124 4.436079 ACTAACCCTCCTGTTTGGATACT 58.564 43.478 0.00 0.00 45.16 2.12
124 125 4.838904 ACTAACCCTCCTGTTTGGATAC 57.161 45.455 0.00 0.00 45.16 2.24
125 126 5.566469 CAAACTAACCCTCCTGTTTGGATA 58.434 41.667 8.90 0.00 45.16 2.59
126 127 4.407365 CAAACTAACCCTCCTGTTTGGAT 58.593 43.478 8.90 0.00 45.16 3.41
127 128 3.827722 CAAACTAACCCTCCTGTTTGGA 58.172 45.455 8.90 0.00 42.93 3.53
129 130 2.890945 CCCAAACTAACCCTCCTGTTTG 59.109 50.000 9.59 9.59 44.90 2.93
130 131 2.516702 ACCCAAACTAACCCTCCTGTTT 59.483 45.455 0.00 0.00 33.56 2.83
131 132 2.141067 ACCCAAACTAACCCTCCTGTT 58.859 47.619 0.00 0.00 0.00 3.16
132 133 1.829138 ACCCAAACTAACCCTCCTGT 58.171 50.000 0.00 0.00 0.00 4.00
133 134 2.971901 AACCCAAACTAACCCTCCTG 57.028 50.000 0.00 0.00 0.00 3.86
134 135 3.878086 TCTAACCCAAACTAACCCTCCT 58.122 45.455 0.00 0.00 0.00 3.69
135 136 4.524053 CATCTAACCCAAACTAACCCTCC 58.476 47.826 0.00 0.00 0.00 4.30
136 137 3.945921 GCATCTAACCCAAACTAACCCTC 59.054 47.826 0.00 0.00 0.00 4.30
137 138 3.332485 TGCATCTAACCCAAACTAACCCT 59.668 43.478 0.00 0.00 0.00 4.34
138 139 3.692690 TGCATCTAACCCAAACTAACCC 58.307 45.455 0.00 0.00 0.00 4.11
139 140 5.193679 AGATGCATCTAACCCAAACTAACC 58.806 41.667 27.73 0.00 34.85 2.85
140 141 7.859325 TTAGATGCATCTAACCCAAACTAAC 57.141 36.000 34.91 4.14 42.66 2.34
173 174 4.416516 CCTCTTGGGTGGGTTAGATTTTT 58.583 43.478 0.00 0.00 0.00 1.94
174 175 4.047627 CCTCTTGGGTGGGTTAGATTTT 57.952 45.455 0.00 0.00 0.00 1.82
175 176 3.739401 CCTCTTGGGTGGGTTAGATTT 57.261 47.619 0.00 0.00 0.00 2.17
188 189 2.807676 ACCCAAATAAGCACCTCTTGG 58.192 47.619 0.00 0.00 36.25 3.61
189 190 5.010282 ACTAACCCAAATAAGCACCTCTTG 58.990 41.667 0.00 0.00 36.25 3.02
190 191 5.256806 ACTAACCCAAATAAGCACCTCTT 57.743 39.130 0.00 0.00 38.79 2.85
191 192 4.929146 ACTAACCCAAATAAGCACCTCT 57.071 40.909 0.00 0.00 0.00 3.69
192 193 5.254115 AGAACTAACCCAAATAAGCACCTC 58.746 41.667 0.00 0.00 0.00 3.85
193 194 5.256806 AGAACTAACCCAAATAAGCACCT 57.743 39.130 0.00 0.00 0.00 4.00
194 195 5.710567 AGAAGAACTAACCCAAATAAGCACC 59.289 40.000 0.00 0.00 0.00 5.01
195 196 6.127980 GGAGAAGAACTAACCCAAATAAGCAC 60.128 42.308 0.00 0.00 0.00 4.40
196 197 5.944007 GGAGAAGAACTAACCCAAATAAGCA 59.056 40.000 0.00 0.00 0.00 3.91
197 198 5.064834 CGGAGAAGAACTAACCCAAATAAGC 59.935 44.000 0.00 0.00 0.00 3.09
198 199 5.585047 CCGGAGAAGAACTAACCCAAATAAG 59.415 44.000 0.00 0.00 0.00 1.73
199 200 5.248934 TCCGGAGAAGAACTAACCCAAATAA 59.751 40.000 0.00 0.00 0.00 1.40
200 201 4.778958 TCCGGAGAAGAACTAACCCAAATA 59.221 41.667 0.00 0.00 0.00 1.40
201 202 3.585732 TCCGGAGAAGAACTAACCCAAAT 59.414 43.478 0.00 0.00 0.00 2.32
202 203 2.974099 TCCGGAGAAGAACTAACCCAAA 59.026 45.455 0.00 0.00 0.00 3.28
203 204 2.565834 CTCCGGAGAAGAACTAACCCAA 59.434 50.000 28.21 0.00 0.00 4.12
204 205 2.176889 CTCCGGAGAAGAACTAACCCA 58.823 52.381 28.21 0.00 0.00 4.51
205 206 1.134759 GCTCCGGAGAAGAACTAACCC 60.135 57.143 35.69 8.63 0.00 4.11
206 207 1.549170 TGCTCCGGAGAAGAACTAACC 59.451 52.381 35.69 13.26 0.00 2.85
207 208 2.231721 AGTGCTCCGGAGAAGAACTAAC 59.768 50.000 35.69 14.02 0.00 2.34
208 209 2.526432 AGTGCTCCGGAGAAGAACTAA 58.474 47.619 35.69 6.08 0.00 2.24
209 210 2.217510 AGTGCTCCGGAGAAGAACTA 57.782 50.000 35.69 8.23 0.00 2.24
210 211 2.217510 TAGTGCTCCGGAGAAGAACT 57.782 50.000 35.69 28.46 0.00 3.01
211 212 3.314541 TTTAGTGCTCCGGAGAAGAAC 57.685 47.619 35.69 23.78 0.00 3.01
212 213 4.345859 TTTTTAGTGCTCCGGAGAAGAA 57.654 40.909 35.69 18.59 0.00 2.52
230 231 5.650543 AGCGAGAGAAAAATGTGTGTTTTT 58.349 33.333 0.00 0.00 42.29 1.94
231 232 5.066505 AGAGCGAGAGAAAAATGTGTGTTTT 59.933 36.000 0.00 0.00 32.94 2.43
232 233 4.576463 AGAGCGAGAGAAAAATGTGTGTTT 59.424 37.500 0.00 0.00 0.00 2.83
233 234 4.130118 AGAGCGAGAGAAAAATGTGTGTT 58.870 39.130 0.00 0.00 0.00 3.32
234 235 3.733337 AGAGCGAGAGAAAAATGTGTGT 58.267 40.909 0.00 0.00 0.00 3.72
235 236 3.124297 GGAGAGCGAGAGAAAAATGTGTG 59.876 47.826 0.00 0.00 0.00 3.82
236 237 3.330267 GGAGAGCGAGAGAAAAATGTGT 58.670 45.455 0.00 0.00 0.00 3.72
237 238 2.675348 GGGAGAGCGAGAGAAAAATGTG 59.325 50.000 0.00 0.00 0.00 3.21
238 239 2.355209 GGGGAGAGCGAGAGAAAAATGT 60.355 50.000 0.00 0.00 0.00 2.71
239 240 2.284190 GGGGAGAGCGAGAGAAAAATG 58.716 52.381 0.00 0.00 0.00 2.32
240 241 1.134670 CGGGGAGAGCGAGAGAAAAAT 60.135 52.381 0.00 0.00 0.00 1.82
241 242 0.246635 CGGGGAGAGCGAGAGAAAAA 59.753 55.000 0.00 0.00 0.00 1.94
242 243 1.890894 CGGGGAGAGCGAGAGAAAA 59.109 57.895 0.00 0.00 0.00 2.29
243 244 2.711922 GCGGGGAGAGCGAGAGAAA 61.712 63.158 0.00 0.00 0.00 2.52
244 245 3.141488 GCGGGGAGAGCGAGAGAA 61.141 66.667 0.00 0.00 0.00 2.87
245 246 4.426313 TGCGGGGAGAGCGAGAGA 62.426 66.667 0.00 0.00 37.44 3.10
246 247 3.898509 CTGCGGGGAGAGCGAGAG 61.899 72.222 0.00 0.00 37.44 3.20
251 252 3.805891 GATCTGCTGCGGGGAGAGC 62.806 68.421 8.89 0.00 45.27 4.09
252 253 2.420890 GATCTGCTGCGGGGAGAG 59.579 66.667 8.89 0.00 45.27 3.20
253 254 3.157252 GGATCTGCTGCGGGGAGA 61.157 66.667 8.89 0.00 46.08 3.71
254 255 2.657102 GAAGGATCTGCTGCGGGGAG 62.657 65.000 8.89 0.00 34.52 4.30
255 256 2.688666 AAGGATCTGCTGCGGGGA 60.689 61.111 8.89 0.33 0.00 4.81
256 257 2.203126 GAAGGATCTGCTGCGGGG 60.203 66.667 8.89 0.00 0.00 5.73
257 258 2.203126 GGAAGGATCTGCTGCGGG 60.203 66.667 8.89 0.00 0.00 6.13
258 259 2.203126 GGGAAGGATCTGCTGCGG 60.203 66.667 0.95 0.95 0.00 5.69
259 260 2.203126 GGGGAAGGATCTGCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
260 261 1.452833 GTGGGGAAGGATCTGCTGC 60.453 63.158 0.00 0.00 0.00 5.25
261 262 0.622665 AAGTGGGGAAGGATCTGCTG 59.377 55.000 0.00 0.00 0.00 4.41
262 263 0.915364 GAAGTGGGGAAGGATCTGCT 59.085 55.000 0.00 0.00 0.00 4.24
263 264 0.106967 GGAAGTGGGGAAGGATCTGC 60.107 60.000 0.00 0.00 0.00 4.26
264 265 1.488393 GAGGAAGTGGGGAAGGATCTG 59.512 57.143 0.00 0.00 0.00 2.90
265 266 1.081174 TGAGGAAGTGGGGAAGGATCT 59.919 52.381 0.00 0.00 0.00 2.75
266 267 1.584724 TGAGGAAGTGGGGAAGGATC 58.415 55.000 0.00 0.00 0.00 3.36
267 268 2.059756 TTGAGGAAGTGGGGAAGGAT 57.940 50.000 0.00 0.00 0.00 3.24
268 269 1.827792 TTTGAGGAAGTGGGGAAGGA 58.172 50.000 0.00 0.00 0.00 3.36
269 270 2.158460 AGTTTTGAGGAAGTGGGGAAGG 60.158 50.000 0.00 0.00 0.00 3.46
270 271 3.229697 AGTTTTGAGGAAGTGGGGAAG 57.770 47.619 0.00 0.00 0.00 3.46
271 272 3.204382 AGAAGTTTTGAGGAAGTGGGGAA 59.796 43.478 0.00 0.00 0.00 3.97
272 273 2.783510 AGAAGTTTTGAGGAAGTGGGGA 59.216 45.455 0.00 0.00 0.00 4.81
273 274 3.229697 AGAAGTTTTGAGGAAGTGGGG 57.770 47.619 0.00 0.00 0.00 4.96
274 275 3.954258 ACAAGAAGTTTTGAGGAAGTGGG 59.046 43.478 5.24 0.00 0.00 4.61
275 276 4.036852 GGACAAGAAGTTTTGAGGAAGTGG 59.963 45.833 5.24 0.00 0.00 4.00
276 277 4.884164 AGGACAAGAAGTTTTGAGGAAGTG 59.116 41.667 5.24 0.00 0.00 3.16
277 278 5.104318 AGAGGACAAGAAGTTTTGAGGAAGT 60.104 40.000 5.24 0.00 0.00 3.01
278 279 5.372373 AGAGGACAAGAAGTTTTGAGGAAG 58.628 41.667 5.24 0.00 0.00 3.46
279 280 5.373812 AGAGGACAAGAAGTTTTGAGGAA 57.626 39.130 5.24 0.00 0.00 3.36
280 281 5.373812 AAGAGGACAAGAAGTTTTGAGGA 57.626 39.130 5.24 0.00 0.00 3.71
281 282 5.825151 AGAAAGAGGACAAGAAGTTTTGAGG 59.175 40.000 5.24 0.00 0.00 3.86
282 283 6.017523 GGAGAAAGAGGACAAGAAGTTTTGAG 60.018 42.308 5.24 0.00 0.00 3.02
283 284 5.823045 GGAGAAAGAGGACAAGAAGTTTTGA 59.177 40.000 5.24 0.00 0.00 2.69
284 285 5.825151 AGGAGAAAGAGGACAAGAAGTTTTG 59.175 40.000 0.00 0.00 0.00 2.44
285 286 6.007485 AGGAGAAAGAGGACAAGAAGTTTT 57.993 37.500 0.00 0.00 0.00 2.43
286 287 5.638530 AGGAGAAAGAGGACAAGAAGTTT 57.361 39.130 0.00 0.00 0.00 2.66
287 288 5.455469 GGAAGGAGAAAGAGGACAAGAAGTT 60.455 44.000 0.00 0.00 0.00 2.66
288 289 4.041075 GGAAGGAGAAAGAGGACAAGAAGT 59.959 45.833 0.00 0.00 0.00 3.01
289 290 4.564613 GGGAAGGAGAAAGAGGACAAGAAG 60.565 50.000 0.00 0.00 0.00 2.85
290 291 3.328050 GGGAAGGAGAAAGAGGACAAGAA 59.672 47.826 0.00 0.00 0.00 2.52
291 292 2.907042 GGGAAGGAGAAAGAGGACAAGA 59.093 50.000 0.00 0.00 0.00 3.02
292 293 2.909662 AGGGAAGGAGAAAGAGGACAAG 59.090 50.000 0.00 0.00 0.00 3.16
293 294 2.907042 GAGGGAAGGAGAAAGAGGACAA 59.093 50.000 0.00 0.00 0.00 3.18
294 295 2.112691 AGAGGGAAGGAGAAAGAGGACA 59.887 50.000 0.00 0.00 0.00 4.02
295 296 2.764010 GAGAGGGAAGGAGAAAGAGGAC 59.236 54.545 0.00 0.00 0.00 3.85
296 297 2.621929 CGAGAGGGAAGGAGAAAGAGGA 60.622 54.545 0.00 0.00 0.00 3.71
297 298 1.754226 CGAGAGGGAAGGAGAAAGAGG 59.246 57.143 0.00 0.00 0.00 3.69
298 299 1.136110 GCGAGAGGGAAGGAGAAAGAG 59.864 57.143 0.00 0.00 0.00 2.85
299 300 1.187087 GCGAGAGGGAAGGAGAAAGA 58.813 55.000 0.00 0.00 0.00 2.52
300 301 0.898320 TGCGAGAGGGAAGGAGAAAG 59.102 55.000 0.00 0.00 0.00 2.62
301 302 1.002087 GTTGCGAGAGGGAAGGAGAAA 59.998 52.381 0.00 0.00 0.00 2.52
302 303 0.608640 GTTGCGAGAGGGAAGGAGAA 59.391 55.000 0.00 0.00 0.00 2.87
303 304 1.595993 CGTTGCGAGAGGGAAGGAGA 61.596 60.000 0.00 0.00 34.23 3.71
304 305 1.153745 CGTTGCGAGAGGGAAGGAG 60.154 63.158 0.00 0.00 34.23 3.69
305 306 1.874345 GACGTTGCGAGAGGGAAGGA 61.874 60.000 0.00 0.00 35.68 3.36
306 307 1.446272 GACGTTGCGAGAGGGAAGG 60.446 63.158 0.00 0.00 37.78 3.46
307 308 1.446272 GGACGTTGCGAGAGGGAAG 60.446 63.158 0.00 0.00 0.00 3.46
308 309 2.654877 GGACGTTGCGAGAGGGAA 59.345 61.111 0.00 0.00 0.00 3.97
309 310 3.744719 CGGACGTTGCGAGAGGGA 61.745 66.667 0.00 0.00 30.86 4.20
310 311 4.052229 ACGGACGTTGCGAGAGGG 62.052 66.667 5.99 0.00 34.49 4.30
311 312 2.742710 TTCACGGACGTTGCGAGAGG 62.743 60.000 5.99 0.00 32.38 3.69
312 313 1.337817 CTTCACGGACGTTGCGAGAG 61.338 60.000 5.99 0.00 32.38 3.20
313 314 1.371267 CTTCACGGACGTTGCGAGA 60.371 57.895 5.99 1.30 34.49 4.04
314 315 2.372690 CCTTCACGGACGTTGCGAG 61.373 63.158 5.99 0.00 34.49 5.03
315 316 2.355363 CCTTCACGGACGTTGCGA 60.355 61.111 5.99 0.00 34.49 5.10
316 317 4.072088 GCCTTCACGGACGTTGCG 62.072 66.667 0.00 0.00 37.19 4.85
317 318 4.072088 CGCCTTCACGGACGTTGC 62.072 66.667 0.00 0.00 33.16 4.17
318 319 4.072088 GCGCCTTCACGGACGTTG 62.072 66.667 0.00 0.00 35.59 4.10
342 343 2.798847 GGGTTAGATGAAACGCGGATAC 59.201 50.000 12.47 0.00 33.39 2.24
343 344 2.696707 AGGGTTAGATGAAACGCGGATA 59.303 45.455 12.47 0.00 44.50 2.59
344 345 1.485066 AGGGTTAGATGAAACGCGGAT 59.515 47.619 12.47 0.00 44.50 4.18
345 346 0.899720 AGGGTTAGATGAAACGCGGA 59.100 50.000 12.47 0.00 44.50 5.54
346 347 1.006832 CAGGGTTAGATGAAACGCGG 58.993 55.000 12.47 0.00 44.50 6.46
347 348 1.659098 GACAGGGTTAGATGAAACGCG 59.341 52.381 3.53 3.53 44.50 6.01
348 349 2.695359 TGACAGGGTTAGATGAAACGC 58.305 47.619 0.00 0.00 41.29 4.84
349 350 3.871594 GGATGACAGGGTTAGATGAAACG 59.128 47.826 0.00 0.00 0.00 3.60
350 351 4.843728 TGGATGACAGGGTTAGATGAAAC 58.156 43.478 0.00 0.00 0.00 2.78
351 352 5.512942 TTGGATGACAGGGTTAGATGAAA 57.487 39.130 0.00 0.00 0.00 2.69
352 353 5.222027 TGTTTGGATGACAGGGTTAGATGAA 60.222 40.000 0.00 0.00 0.00 2.57
353 354 4.288366 TGTTTGGATGACAGGGTTAGATGA 59.712 41.667 0.00 0.00 0.00 2.92
354 355 4.588899 TGTTTGGATGACAGGGTTAGATG 58.411 43.478 0.00 0.00 0.00 2.90
355 356 4.927267 TGTTTGGATGACAGGGTTAGAT 57.073 40.909 0.00 0.00 0.00 1.98
356 357 4.536090 AGATGTTTGGATGACAGGGTTAGA 59.464 41.667 0.00 0.00 0.00 2.10
357 358 4.848357 AGATGTTTGGATGACAGGGTTAG 58.152 43.478 0.00 0.00 0.00 2.34
358 359 4.536090 AGAGATGTTTGGATGACAGGGTTA 59.464 41.667 0.00 0.00 0.00 2.85
359 360 3.331889 AGAGATGTTTGGATGACAGGGTT 59.668 43.478 0.00 0.00 0.00 4.11
360 361 2.915604 AGAGATGTTTGGATGACAGGGT 59.084 45.455 0.00 0.00 0.00 4.34
361 362 3.641434 AGAGATGTTTGGATGACAGGG 57.359 47.619 0.00 0.00 0.00 4.45
362 363 5.306532 CAAAGAGATGTTTGGATGACAGG 57.693 43.478 0.00 0.00 34.34 4.00
371 372 7.672983 TTAACTCTAGCCAAAGAGATGTTTG 57.327 36.000 13.61 0.00 44.93 2.93
372 373 8.870075 AATTAACTCTAGCCAAAGAGATGTTT 57.130 30.769 13.61 2.57 44.93 2.83
373 374 8.103305 TGAATTAACTCTAGCCAAAGAGATGTT 58.897 33.333 13.61 3.53 44.93 2.71
374 375 7.624549 TGAATTAACTCTAGCCAAAGAGATGT 58.375 34.615 13.61 3.47 44.93 3.06
375 376 7.226325 CCTGAATTAACTCTAGCCAAAGAGATG 59.774 40.741 13.61 0.00 44.93 2.90
376 377 7.278875 CCTGAATTAACTCTAGCCAAAGAGAT 58.721 38.462 13.61 5.99 44.93 2.75
377 378 6.352222 CCCTGAATTAACTCTAGCCAAAGAGA 60.352 42.308 13.61 0.00 44.93 3.10
379 380 5.250774 ACCCTGAATTAACTCTAGCCAAAGA 59.749 40.000 0.00 0.00 0.00 2.52
380 381 5.501156 ACCCTGAATTAACTCTAGCCAAAG 58.499 41.667 0.00 0.00 0.00 2.77
381 382 5.514500 ACCCTGAATTAACTCTAGCCAAA 57.486 39.130 0.00 0.00 0.00 3.28
382 383 5.514500 AACCCTGAATTAACTCTAGCCAA 57.486 39.130 0.00 0.00 0.00 4.52
383 384 5.962031 TCTAACCCTGAATTAACTCTAGCCA 59.038 40.000 0.00 0.00 0.00 4.75
384 385 6.481434 TCTAACCCTGAATTAACTCTAGCC 57.519 41.667 0.00 0.00 0.00 3.93
385 386 8.425703 AGATTCTAACCCTGAATTAACTCTAGC 58.574 37.037 0.00 0.00 34.67 3.42
405 406 9.403583 CTCAGTTAGAGGTTAGAGTTAGATTCT 57.596 37.037 0.00 0.00 40.84 2.40
407 408 9.536510 AACTCAGTTAGAGGTTAGAGTTAGATT 57.463 33.333 0.00 0.00 43.38 2.40
423 424 7.976734 CCTGTTTGGATACTCTAACTCAGTTAG 59.023 40.741 17.42 17.42 41.36 2.34
424 425 7.672660 TCCTGTTTGGATACTCTAACTCAGTTA 59.327 37.037 0.00 0.00 40.56 2.24
425 426 6.497259 TCCTGTTTGGATACTCTAACTCAGTT 59.503 38.462 0.00 0.00 40.56 3.16
426 427 6.017192 TCCTGTTTGGATACTCTAACTCAGT 58.983 40.000 0.00 0.00 40.56 3.41
427 428 6.531503 TCCTGTTTGGATACTCTAACTCAG 57.468 41.667 0.00 0.00 40.56 3.35
440 441 4.038642 GCATAAACTTTGGTCCTGTTTGGA 59.961 41.667 14.23 0.00 43.86 3.53
441 442 4.202202 TGCATAAACTTTGGTCCTGTTTGG 60.202 41.667 14.23 9.61 35.77 3.28
442 443 4.744631 GTGCATAAACTTTGGTCCTGTTTG 59.255 41.667 14.23 5.16 35.77 2.93
443 444 4.499019 CGTGCATAAACTTTGGTCCTGTTT 60.499 41.667 0.00 11.09 37.60 2.83
444 445 3.004315 CGTGCATAAACTTTGGTCCTGTT 59.996 43.478 0.00 0.00 0.00 3.16
445 446 2.552315 CGTGCATAAACTTTGGTCCTGT 59.448 45.455 0.00 0.00 0.00 4.00
446 447 2.095263 CCGTGCATAAACTTTGGTCCTG 60.095 50.000 0.00 0.00 0.00 3.86
447 448 2.159382 CCGTGCATAAACTTTGGTCCT 58.841 47.619 0.00 0.00 0.00 3.85
448 449 1.201414 CCCGTGCATAAACTTTGGTCC 59.799 52.381 0.00 0.00 0.00 4.46
449 450 1.402325 GCCCGTGCATAAACTTTGGTC 60.402 52.381 0.00 0.00 37.47 4.02
450 451 0.601057 GCCCGTGCATAAACTTTGGT 59.399 50.000 0.00 0.00 37.47 3.67
451 452 0.108851 GGCCCGTGCATAAACTTTGG 60.109 55.000 0.00 0.00 40.13 3.28
452 453 0.600557 TGGCCCGTGCATAAACTTTG 59.399 50.000 0.00 0.00 40.13 2.77
453 454 0.601057 GTGGCCCGTGCATAAACTTT 59.399 50.000 0.00 0.00 40.13 2.66
480 485 1.871039 GCACGTAGGAAAGCTCAACAA 59.129 47.619 0.00 0.00 0.00 2.83
481 486 1.202592 TGCACGTAGGAAAGCTCAACA 60.203 47.619 0.00 0.00 0.00 3.33
506 511 4.554036 GTGGGAGATGGGAGGCGC 62.554 72.222 0.00 0.00 0.00 6.53
515 525 1.003233 GGTTCAACTTCGGTGGGAGAT 59.997 52.381 0.00 0.00 0.00 2.75
521 531 0.179029 AGGGTGGTTCAACTTCGGTG 60.179 55.000 0.00 0.00 0.00 4.94
526 536 0.755327 GGTGCAGGGTGGTTCAACTT 60.755 55.000 0.00 0.00 0.00 2.66
528 538 2.551912 CGGTGCAGGGTGGTTCAAC 61.552 63.158 0.00 0.00 0.00 3.18
549 559 2.754658 ACGGTGGAGGTAGAGCCG 60.755 66.667 0.00 0.00 46.83 5.52
553 563 1.553706 GAAAGGACGGTGGAGGTAGA 58.446 55.000 0.00 0.00 0.00 2.59
566 577 3.616560 GCGTTCTCACTACATGGAAAGGA 60.617 47.826 0.00 0.00 0.00 3.36
662 688 3.462483 TGTTTTACTCGAGTGGCAAGA 57.538 42.857 28.12 12.75 0.00 3.02
710 751 2.501723 AGTGTGGACTGGATATGGTCAC 59.498 50.000 0.00 0.00 34.49 3.67
716 757 3.452627 GACTTGGAGTGTGGACTGGATAT 59.547 47.826 0.00 0.00 30.16 1.63
717 758 2.832129 GACTTGGAGTGTGGACTGGATA 59.168 50.000 0.00 0.00 30.16 2.59
718 759 1.625818 GACTTGGAGTGTGGACTGGAT 59.374 52.381 0.00 0.00 30.16 3.41
763 811 0.473501 ATGGATGAGGAGGAGAGGCC 60.474 60.000 0.00 0.00 0.00 5.19
766 814 1.255882 CGGATGGATGAGGAGGAGAG 58.744 60.000 0.00 0.00 0.00 3.20
857 1216 1.087501 GGAAGCAAAAGAGGTAGCCG 58.912 55.000 0.00 0.00 0.00 5.52
865 1224 6.785466 AGGGGTTTAAATAAGGAAGCAAAAGA 59.215 34.615 0.00 0.00 0.00 2.52
876 1235 4.887655 CCAGCTGGTAGGGGTTTAAATAAG 59.112 45.833 25.53 0.00 0.00 1.73
877 1240 4.862371 CCAGCTGGTAGGGGTTTAAATAA 58.138 43.478 25.53 0.00 0.00 1.40
917 1280 0.318762 AGGAAGGAGTTCGTGTGCTC 59.681 55.000 0.00 0.00 32.92 4.26
925 1288 1.611936 GGCTTGGTGAGGAAGGAGTTC 60.612 57.143 0.00 0.00 0.00 3.01
955 1343 2.166579 GCTGCTTGCTCGCTCTCTC 61.167 63.158 0.00 0.00 38.95 3.20
979 1367 1.591703 CGGACTTGCAGCAGAGGTA 59.408 57.895 0.00 0.00 0.00 3.08
1335 1811 3.589988 GTCAAGGTGGTGATCACTACAG 58.410 50.000 34.41 25.22 43.51 2.74
1389 1867 4.822026 CGTGAGGAGTGAAAGTTATCCTT 58.178 43.478 0.00 0.00 42.27 3.36
1409 1896 1.400494 GAACAACAAGACAAGTGCCGT 59.600 47.619 0.00 0.00 0.00 5.68
1446 1943 2.019951 CCCTGACGACGGAACAACG 61.020 63.158 0.00 0.00 40.31 4.10
1532 2337 3.761752 ACCACCAAAACACTGTATATGCC 59.238 43.478 0.00 0.00 0.00 4.40
1687 2521 6.663093 TGTTGGCATGGATAACTTCTTTACAT 59.337 34.615 0.00 0.00 0.00 2.29
1738 2581 4.392138 CACGAGATCTTTCTTAACAACCCC 59.608 45.833 0.00 0.00 30.30 4.95
1764 2607 5.936187 TCATGTTTTATACTCCCGTACCA 57.064 39.130 0.00 0.00 0.00 3.25
1769 2612 5.050363 CGGTCATTCATGTTTTATACTCCCG 60.050 44.000 0.00 0.00 0.00 5.14
1787 2630 0.031043 TTCGTCAACACGTCGGTCAT 59.969 50.000 0.00 0.00 46.76 3.06
1857 2702 1.001815 GTTGAAACACATGTGGACCGG 60.002 52.381 28.64 0.00 34.19 5.28
1900 2751 7.994425 TCTTGTTCTGGCTTGTAAATATTCA 57.006 32.000 0.00 0.00 0.00 2.57
1908 2759 4.563580 GGTGAGATCTTGTTCTGGCTTGTA 60.564 45.833 0.00 0.00 0.00 2.41
1917 2768 1.909302 TCAGGGGGTGAGATCTTGTTC 59.091 52.381 0.00 0.00 0.00 3.18
1921 2772 0.978146 CGGTCAGGGGGTGAGATCTT 60.978 60.000 0.00 0.00 35.13 2.40
1934 2785 7.518052 CGAGGTACTAGTATTACTTTCGGTCAG 60.518 44.444 5.75 0.00 41.55 3.51
1937 2788 6.349300 TCGAGGTACTAGTATTACTTTCGGT 58.651 40.000 5.75 0.34 41.55 4.69
2037 3601 1.033202 TACATCGGCCGCTGTCAGTA 61.033 55.000 35.46 17.51 0.00 2.74
2045 3609 1.153628 AAGTGAGTACATCGGCCGC 60.154 57.895 23.51 5.81 0.00 6.53
2063 3627 5.640357 ACTTTTGTCGAGTACACTTTTGACA 59.360 36.000 0.00 0.00 38.00 3.58
2119 3687 7.439381 TCCACAAACTGTAACTTAAGTCCTAG 58.561 38.462 8.95 9.57 0.00 3.02
2144 3712 3.535561 AGCAAAACGAGTAGCAGCATAT 58.464 40.909 0.00 0.00 0.00 1.78
2145 3713 2.930040 GAGCAAAACGAGTAGCAGCATA 59.070 45.455 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.