Multiple sequence alignment - TraesCS3B01G385800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G385800 chr3B 100.000 3316 0 0 946 4261 605912628 605909313 0.000000e+00 6124.0
1 TraesCS3B01G385800 chr3B 78.362 2246 329 85 946 3110 727740745 727742914 0.000000e+00 1310.0
2 TraesCS3B01G385800 chr3B 79.256 2015 275 70 1075 3050 728617857 728615947 0.000000e+00 1273.0
3 TraesCS3B01G385800 chr3B 100.000 563 0 0 1 563 605913573 605913011 0.000000e+00 1040.0
4 TraesCS3B01G385800 chr3B 81.217 1150 175 25 946 2073 728890575 728889445 0.000000e+00 889.0
5 TraesCS3B01G385800 chr3B 79.293 1357 186 48 946 2261 728753904 728752602 0.000000e+00 861.0
6 TraesCS3B01G385800 chr3B 81.745 745 113 11 1170 1904 727794138 727794869 6.100000e-168 601.0
7 TraesCS3B01G385800 chr3B 81.818 286 45 4 2134 2416 728584572 728584291 2.560000e-57 233.0
8 TraesCS3B01G385800 chr3B 78.841 345 50 17 3449 3782 728583327 728582995 1.200000e-50 211.0
9 TraesCS3B01G385800 chr3B 80.000 270 20 20 311 563 728890886 728890634 7.330000e-38 169.0
10 TraesCS3B01G385800 chr3B 86.538 156 12 4 1006 1152 727792808 727792963 3.410000e-36 163.0
11 TraesCS3B01G385800 chr3B 87.586 145 13 4 3151 3294 775523290 775523430 3.410000e-36 163.0
12 TraesCS3B01G385800 chr3D 93.934 3264 143 29 946 4202 458885801 458882586 0.000000e+00 4879.0
13 TraesCS3B01G385800 chr3D 80.608 2403 315 85 946 3294 549061816 549059511 0.000000e+00 1716.0
14 TraesCS3B01G385800 chr3D 79.974 2282 293 74 1072 3297 549109532 549107359 0.000000e+00 1531.0
15 TraesCS3B01G385800 chr3D 79.353 1763 238 74 946 2646 549127073 549125375 0.000000e+00 1123.0
16 TraesCS3B01G385800 chr3D 78.784 1744 254 60 946 2633 548694481 548696164 0.000000e+00 1064.0
17 TraesCS3B01G385800 chr3D 81.540 1208 176 28 946 2131 549349658 549348476 0.000000e+00 952.0
18 TraesCS3B01G385800 chr3D 79.946 1107 134 50 1969 3027 549052533 549051467 0.000000e+00 734.0
19 TraesCS3B01G385800 chr3D 84.551 479 57 14 2609 3080 548727327 548727795 3.880000e-125 459.0
20 TraesCS3B01G385800 chr3D 78.470 562 77 25 946 1471 549056720 549056167 1.140000e-85 327.0
21 TraesCS3B01G385800 chr3D 79.601 451 69 11 2089 2532 549463997 549463563 6.920000e-78 302.0
22 TraesCS3B01G385800 chr3D 97.600 125 2 1 439 563 458885983 458885860 3.340000e-51 213.0
23 TraesCS3B01G385800 chr3D 79.930 284 31 8 283 563 549349977 549349717 7.280000e-43 185.0
24 TraesCS3B01G385800 chr3D 83.163 196 20 10 3434 3625 549065823 549065637 2.640000e-37 167.0
25 TraesCS3B01G385800 chr3D 81.183 186 26 4 946 1122 549109712 549109527 1.600000e-29 141.0
26 TraesCS3B01G385800 chr3D 85.965 114 8 5 454 563 549468029 549467920 9.680000e-22 115.0
27 TraesCS3B01G385800 chr3D 85.714 98 8 3 466 563 548694331 548694422 9.750000e-17 99.0
28 TraesCS3B01G385800 chr3D 95.556 45 2 0 3944 3988 549106440 549106396 5.910000e-09 73.1
29 TraesCS3B01G385800 chr3D 97.143 35 1 0 529 563 549109805 549109771 4.600000e-05 60.2
30 TraesCS3B01G385800 chr3A 95.751 1812 68 6 946 2752 601133816 601132009 0.000000e+00 2911.0
31 TraesCS3B01G385800 chr3A 80.366 2404 316 76 949 3294 686539107 686536802 0.000000e+00 1681.0
32 TraesCS3B01G385800 chr3A 93.138 1093 52 11 2748 3838 601131968 601130897 0.000000e+00 1581.0
33 TraesCS3B01G385800 chr3A 80.397 1561 230 37 946 2467 686183223 686184746 0.000000e+00 1118.0
34 TraesCS3B01G385800 chr3A 77.477 1776 264 71 946 2646 686617290 686615576 0.000000e+00 939.0
35 TraesCS3B01G385800 chr3A 84.564 894 103 15 2418 3297 686583632 686582760 0.000000e+00 854.0
36 TraesCS3B01G385800 chr3A 84.580 869 100 19 2443 3290 686708925 686708070 0.000000e+00 832.0
37 TraesCS3B01G385800 chr3A 80.295 1152 180 31 946 2073 686749702 686748574 0.000000e+00 826.0
38 TraesCS3B01G385800 chr3A 82.649 853 109 26 1600 2439 686549832 686549006 0.000000e+00 719.0
39 TraesCS3B01G385800 chr3A 77.917 1037 153 47 946 1928 686535198 686534184 1.030000e-160 577.0
40 TraesCS3B01G385800 chr3A 80.464 819 106 32 2516 3297 686548981 686548180 1.030000e-160 577.0
41 TraesCS3B01G385800 chr3A 77.766 967 122 42 1970 2890 686533975 686533056 3.800000e-140 508.0
42 TraesCS3B01G385800 chr3A 93.092 304 21 0 258 561 601134180 601133877 3.020000e-121 446.0
43 TraesCS3B01G385800 chr3A 81.081 555 75 16 2099 2641 686748508 686747972 2.370000e-112 416.0
44 TraesCS3B01G385800 chr3A 85.714 315 20 7 3947 4260 601130573 601130283 4.140000e-80 309.0
45 TraesCS3B01G385800 chr3A 79.357 373 58 14 3437 3797 686708030 686707665 1.180000e-60 244.0
46 TraesCS3B01G385800 chr3A 93.000 100 6 1 3835 3934 601130775 601130677 1.230000e-30 145.0
47 TraesCS3B01G385800 chr3A 88.000 125 12 2 442 563 686551653 686551529 1.230000e-30 145.0
48 TraesCS3B01G385800 chr3A 87.273 110 11 2 3299 3407 484995070 484995177 5.790000e-24 122.0
49 TraesCS3B01G385800 chr3A 86.842 114 7 5 454 563 686749870 686749761 2.080000e-23 121.0
50 TraesCS3B01G385800 chr3A 86.869 99 7 6 466 563 686183071 686183164 5.830000e-19 106.0
51 TraesCS3B01G385800 chr7B 79.757 2218 346 61 946 3100 543187137 543189314 0.000000e+00 1513.0
52 TraesCS3B01G385800 chr7B 92.982 57 4 0 3146 3202 543190454 543190510 2.730000e-12 84.2
53 TraesCS3B01G385800 chrUn 82.292 192 22 9 3434 3623 361109898 361109717 5.700000e-34 156.0
54 TraesCS3B01G385800 chr6A 82.796 186 20 9 3431 3614 471745675 471745850 5.700000e-34 156.0
55 TraesCS3B01G385800 chr6A 91.818 110 8 1 3294 3403 538105617 538105509 7.380000e-33 152.0
56 TraesCS3B01G385800 chr5A 82.383 193 21 10 3434 3623 103311015 103310833 5.700000e-34 156.0
57 TraesCS3B01G385800 chr1A 82.888 187 19 10 3431 3614 20730610 20730786 5.700000e-34 156.0
58 TraesCS3B01G385800 chr1A 85.965 114 11 2 3299 3412 429490097 429490205 2.690000e-22 117.0
59 TraesCS3B01G385800 chr1D 91.743 109 9 0 3295 3403 335588902 335588794 7.380000e-33 152.0
60 TraesCS3B01G385800 chr1B 90.826 109 10 0 3295 3403 451736561 451736453 3.430000e-31 147.0
61 TraesCS3B01G385800 chr1B 87.500 120 10 2 3293 3412 446634063 446634177 2.670000e-27 134.0
62 TraesCS3B01G385800 chr6D 92.929 99 6 1 3294 3392 392280708 392280611 4.440000e-30 143.0
63 TraesCS3B01G385800 chr6B 87.805 82 10 0 3294 3375 143466366 143466447 3.510000e-16 97.1
64 TraesCS3B01G385800 chr6B 96.226 53 1 1 4 56 166253101 166253050 7.590000e-13 86.1
65 TraesCS3B01G385800 chr2B 95.833 48 2 0 153 200 648808598 648808645 1.270000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G385800 chr3B 605909313 605913573 4260 True 3582.000000 6124 100.000000 1 4261 2 chr3B.!!$R3 4260
1 TraesCS3B01G385800 chr3B 727740745 727742914 2169 False 1310.000000 1310 78.362000 946 3110 1 chr3B.!!$F1 2164
2 TraesCS3B01G385800 chr3B 728615947 728617857 1910 True 1273.000000 1273 79.256000 1075 3050 1 chr3B.!!$R1 1975
3 TraesCS3B01G385800 chr3B 728752602 728753904 1302 True 861.000000 861 79.293000 946 2261 1 chr3B.!!$R2 1315
4 TraesCS3B01G385800 chr3B 728889445 728890886 1441 True 529.000000 889 80.608500 311 2073 2 chr3B.!!$R5 1762
5 TraesCS3B01G385800 chr3B 727792808 727794869 2061 False 382.000000 601 84.141500 1006 1904 2 chr3B.!!$F3 898
6 TraesCS3B01G385800 chr3B 728582995 728584572 1577 True 222.000000 233 80.329500 2134 3782 2 chr3B.!!$R4 1648
7 TraesCS3B01G385800 chr3D 458882586 458885983 3397 True 2546.000000 4879 95.767000 439 4202 2 chr3D.!!$R2 3763
8 TraesCS3B01G385800 chr3D 549125375 549127073 1698 True 1123.000000 1123 79.353000 946 2646 1 chr3D.!!$R1 1700
9 TraesCS3B01G385800 chr3D 549051467 549065823 14356 True 736.000000 1716 80.546750 946 3625 4 chr3D.!!$R3 2679
10 TraesCS3B01G385800 chr3D 548694331 548696164 1833 False 581.500000 1064 82.249000 466 2633 2 chr3D.!!$F2 2167
11 TraesCS3B01G385800 chr3D 549348476 549349977 1501 True 568.500000 952 80.735000 283 2131 2 chr3D.!!$R5 1848
12 TraesCS3B01G385800 chr3D 549106396 549109805 3409 True 451.325000 1531 88.464000 529 3988 4 chr3D.!!$R4 3459
13 TraesCS3B01G385800 chr3D 549463563 549468029 4466 True 208.500000 302 82.783000 454 2532 2 chr3D.!!$R6 2078
14 TraesCS3B01G385800 chr3A 601130283 601134180 3897 True 1078.400000 2911 92.139000 258 4260 5 chr3A.!!$R3 4002
15 TraesCS3B01G385800 chr3A 686615576 686617290 1714 True 939.000000 939 77.477000 946 2646 1 chr3A.!!$R2 1700
16 TraesCS3B01G385800 chr3A 686533056 686539107 6051 True 922.000000 1681 78.683000 946 3294 3 chr3A.!!$R4 2348
17 TraesCS3B01G385800 chr3A 686582760 686583632 872 True 854.000000 854 84.564000 2418 3297 1 chr3A.!!$R1 879
18 TraesCS3B01G385800 chr3A 686183071 686184746 1675 False 612.000000 1118 83.633000 466 2467 2 chr3A.!!$F2 2001
19 TraesCS3B01G385800 chr3A 686707665 686708925 1260 True 538.000000 832 81.968500 2443 3797 2 chr3A.!!$R6 1354
20 TraesCS3B01G385800 chr3A 686548180 686551653 3473 True 480.333333 719 83.704333 442 3297 3 chr3A.!!$R5 2855
21 TraesCS3B01G385800 chr3A 686747972 686749870 1898 True 454.333333 826 82.739333 454 2641 3 chr3A.!!$R7 2187
22 TraesCS3B01G385800 chr7B 543187137 543190510 3373 False 798.600000 1513 86.369500 946 3202 2 chr7B.!!$F1 2256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.905357 TGCTCCTCTACTTTCTGCCC 59.095 55.000 0.0 0.0 0.00 5.36 F
253 254 1.117150 TATTTTCGGAGGACGGAGGG 58.883 55.000 0.0 0.0 44.45 4.30 F
981 9140 1.531748 GCCGATCCCCAATTCCAGA 59.468 57.895 0.0 0.0 0.00 3.86 F
1443 10857 1.741525 CCACAACCCAGCACTTTGG 59.258 57.895 0.0 0.0 38.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 15122 0.035458 CCAAAGTGAGGAAGTCGCCT 59.965 55.0 0.00 0.0 42.17 5.52 R
1991 18266 5.065602 TCAATCATCAGCATAACACTCAAGC 59.934 40.0 0.00 0.0 0.00 4.01 R
2413 18803 1.448985 GCGGTCCAGTGCTGAAAATA 58.551 50.0 0.02 0.0 0.00 1.40 R
3294 21053 1.046204 ATTCCGGACGGAGGGATTAC 58.954 55.0 13.64 0.0 46.06 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.952935 AAGATAATTGTTGTCGAGTCACTC 57.047 37.500 0.00 0.00 0.00 3.51
45 46 6.025749 AGATAATTGTTGTCGAGTCACTCA 57.974 37.500 5.45 0.00 0.00 3.41
47 48 6.929049 AGATAATTGTTGTCGAGTCACTCAAA 59.071 34.615 5.45 0.00 0.00 2.69
48 49 7.604164 AGATAATTGTTGTCGAGTCACTCAAAT 59.396 33.333 5.45 0.00 0.00 2.32
50 51 7.672983 AATTGTTGTCGAGTCACTCAAATAT 57.327 32.000 5.45 0.00 0.00 1.28
54 55 6.255670 TGTTGTCGAGTCACTCAAATATATGC 59.744 38.462 5.45 0.00 0.00 3.14
55 56 5.901552 TGTCGAGTCACTCAAATATATGCA 58.098 37.500 5.45 0.00 0.00 3.96
56 57 5.748630 TGTCGAGTCACTCAAATATATGCAC 59.251 40.000 5.45 0.00 0.00 4.57
58 59 5.979517 TCGAGTCACTCAAATATATGCACTG 59.020 40.000 5.45 0.00 0.00 3.66
59 60 5.750547 CGAGTCACTCAAATATATGCACTGT 59.249 40.000 5.45 0.00 0.00 3.55
61 62 7.114106 CGAGTCACTCAAATATATGCACTGTAG 59.886 40.741 5.45 0.00 0.00 2.74
62 63 6.703607 AGTCACTCAAATATATGCACTGTAGC 59.296 38.462 0.00 0.00 0.00 3.58
63 64 5.991606 TCACTCAAATATATGCACTGTAGCC 59.008 40.000 0.00 0.00 0.00 3.93
66 67 5.928976 TCAAATATATGCACTGTAGCCTGT 58.071 37.500 0.00 0.00 0.00 4.00
67 68 7.061566 TCAAATATATGCACTGTAGCCTGTA 57.938 36.000 0.00 0.00 0.00 2.74
68 69 7.154656 TCAAATATATGCACTGTAGCCTGTAG 58.845 38.462 0.00 0.00 0.00 2.74
69 70 2.890808 TATGCACTGTAGCCTGTAGC 57.109 50.000 0.00 0.00 44.25 3.58
78 79 2.048222 GCCTGTAGCAGTCGCACA 60.048 61.111 0.00 0.00 42.97 4.57
80 81 1.586541 CCTGTAGCAGTCGCACAGA 59.413 57.895 14.43 0.00 43.80 3.41
95 96 4.095932 TCGCACAGACATTGTACTAGTAGG 59.904 45.833 1.87 0.00 38.16 3.18
96 97 4.095932 CGCACAGACATTGTACTAGTAGGA 59.904 45.833 1.87 0.00 38.16 2.94
97 98 5.221067 CGCACAGACATTGTACTAGTAGGAT 60.221 44.000 1.87 0.00 38.16 3.24
98 99 6.574350 GCACAGACATTGTACTAGTAGGATT 58.426 40.000 1.87 0.00 38.16 3.01
100 101 8.195436 GCACAGACATTGTACTAGTAGGATTAA 58.805 37.037 1.87 0.00 38.16 1.40
108 109 9.847224 ATTGTACTAGTAGGATTAATTGGTTGG 57.153 33.333 1.87 0.00 0.00 3.77
110 111 9.220906 TGTACTAGTAGGATTAATTGGTTGGAT 57.779 33.333 1.87 0.00 0.00 3.41
111 112 9.490379 GTACTAGTAGGATTAATTGGTTGGATG 57.510 37.037 1.87 0.00 0.00 3.51
112 113 6.998673 ACTAGTAGGATTAATTGGTTGGATGC 59.001 38.462 1.45 0.00 0.00 3.91
113 114 6.018433 AGTAGGATTAATTGGTTGGATGCT 57.982 37.500 0.00 0.00 0.00 3.79
114 115 6.064717 AGTAGGATTAATTGGTTGGATGCTC 58.935 40.000 0.00 0.00 0.00 4.26
115 116 4.218312 AGGATTAATTGGTTGGATGCTCC 58.782 43.478 0.00 0.00 36.96 4.70
116 117 4.078980 AGGATTAATTGGTTGGATGCTCCT 60.079 41.667 4.21 0.00 37.46 3.69
117 118 4.279420 GGATTAATTGGTTGGATGCTCCTC 59.721 45.833 4.21 0.00 37.46 3.71
119 120 5.708736 TTAATTGGTTGGATGCTCCTCTA 57.291 39.130 4.21 0.00 37.46 2.43
120 121 3.567478 ATTGGTTGGATGCTCCTCTAC 57.433 47.619 4.21 1.06 37.46 2.59
121 122 2.254152 TGGTTGGATGCTCCTCTACT 57.746 50.000 4.21 0.00 37.46 2.57
123 124 2.912956 TGGTTGGATGCTCCTCTACTTT 59.087 45.455 4.21 0.00 37.46 2.66
124 125 3.055094 TGGTTGGATGCTCCTCTACTTTC 60.055 47.826 4.21 0.00 37.46 2.62
125 126 3.198853 GGTTGGATGCTCCTCTACTTTCT 59.801 47.826 4.21 0.00 37.46 2.52
126 127 4.187694 GTTGGATGCTCCTCTACTTTCTG 58.812 47.826 4.21 0.00 37.46 3.02
128 129 2.484594 GGATGCTCCTCTACTTTCTGCC 60.485 54.545 0.00 0.00 32.53 4.85
129 130 0.905357 TGCTCCTCTACTTTCTGCCC 59.095 55.000 0.00 0.00 0.00 5.36
130 131 1.199615 GCTCCTCTACTTTCTGCCCT 58.800 55.000 0.00 0.00 0.00 5.19
131 132 1.138069 GCTCCTCTACTTTCTGCCCTC 59.862 57.143 0.00 0.00 0.00 4.30
133 134 3.904717 CTCCTCTACTTTCTGCCCTCTA 58.095 50.000 0.00 0.00 0.00 2.43
134 135 4.479158 CTCCTCTACTTTCTGCCCTCTAT 58.521 47.826 0.00 0.00 0.00 1.98
136 137 6.027025 TCCTCTACTTTCTGCCCTCTATAA 57.973 41.667 0.00 0.00 0.00 0.98
137 138 6.441222 TCCTCTACTTTCTGCCCTCTATAAA 58.559 40.000 0.00 0.00 0.00 1.40
138 139 6.901300 TCCTCTACTTTCTGCCCTCTATAAAA 59.099 38.462 0.00 0.00 0.00 1.52
140 141 8.871125 CCTCTACTTTCTGCCCTCTATAAAATA 58.129 37.037 0.00 0.00 0.00 1.40
141 142 9.699703 CTCTACTTTCTGCCCTCTATAAAATAC 57.300 37.037 0.00 0.00 0.00 1.89
142 143 9.435570 TCTACTTTCTGCCCTCTATAAAATACT 57.564 33.333 0.00 0.00 0.00 2.12
143 144 9.699703 CTACTTTCTGCCCTCTATAAAATACTC 57.300 37.037 0.00 0.00 0.00 2.59
144 145 8.090788 ACTTTCTGCCCTCTATAAAATACTCA 57.909 34.615 0.00 0.00 0.00 3.41
145 146 7.988028 ACTTTCTGCCCTCTATAAAATACTCAC 59.012 37.037 0.00 0.00 0.00 3.51
146 147 7.676683 TTCTGCCCTCTATAAAATACTCACT 57.323 36.000 0.00 0.00 0.00 3.41
147 148 7.291411 TCTGCCCTCTATAAAATACTCACTC 57.709 40.000 0.00 0.00 0.00 3.51
148 149 6.267928 TCTGCCCTCTATAAAATACTCACTCC 59.732 42.308 0.00 0.00 0.00 3.85
149 150 5.010719 TGCCCTCTATAAAATACTCACTCCG 59.989 44.000 0.00 0.00 0.00 4.63
150 151 5.010820 GCCCTCTATAAAATACTCACTCCGT 59.989 44.000 0.00 0.00 0.00 4.69
151 152 6.679843 CCCTCTATAAAATACTCACTCCGTC 58.320 44.000 0.00 0.00 0.00 4.79
155 156 8.289939 TCTATAAAATACTCACTCCGTCAGTT 57.710 34.615 0.00 0.00 30.26 3.16
156 157 8.404000 TCTATAAAATACTCACTCCGTCAGTTC 58.596 37.037 0.00 0.00 30.26 3.01
157 158 5.470047 AAAATACTCACTCCGTCAGTTCT 57.530 39.130 0.00 0.00 30.26 3.01
158 159 6.585695 AAAATACTCACTCCGTCAGTTCTA 57.414 37.500 0.00 0.00 30.26 2.10
159 160 5.821516 AATACTCACTCCGTCAGTTCTAG 57.178 43.478 0.00 0.00 30.26 2.43
162 163 5.100344 ACTCACTCCGTCAGTTCTAGATA 57.900 43.478 0.00 0.00 30.26 1.98
164 165 4.840271 TCACTCCGTCAGTTCTAGATACA 58.160 43.478 0.00 0.00 30.26 2.29
166 167 5.527951 TCACTCCGTCAGTTCTAGATACATC 59.472 44.000 0.00 0.00 30.26 3.06
167 168 4.822896 ACTCCGTCAGTTCTAGATACATCC 59.177 45.833 0.00 0.00 26.56 3.51
168 169 4.142790 TCCGTCAGTTCTAGATACATCCC 58.857 47.826 0.00 0.00 0.00 3.85
169 170 4.141228 TCCGTCAGTTCTAGATACATCCCT 60.141 45.833 0.00 0.00 0.00 4.20
170 171 4.585162 CCGTCAGTTCTAGATACATCCCTT 59.415 45.833 0.00 0.00 0.00 3.95
172 173 6.407074 CCGTCAGTTCTAGATACATCCCTTTT 60.407 42.308 0.00 0.00 0.00 2.27
173 174 7.042335 CGTCAGTTCTAGATACATCCCTTTTT 58.958 38.462 0.00 0.00 0.00 1.94
174 175 8.195436 CGTCAGTTCTAGATACATCCCTTTTTA 58.805 37.037 0.00 0.00 0.00 1.52
208 209 9.935682 TGATGACAAATATTTTCGAAATAGCTC 57.064 29.630 12.12 1.65 0.00 4.09
247 248 9.760077 TTTAGATGATAAGTATTTTCGGAGGAC 57.240 33.333 0.00 0.00 0.00 3.85
248 249 6.448006 AGATGATAAGTATTTTCGGAGGACG 58.552 40.000 0.00 0.00 46.11 4.79
249 250 4.940463 TGATAAGTATTTTCGGAGGACGG 58.060 43.478 0.00 0.00 44.45 4.79
250 251 4.646040 TGATAAGTATTTTCGGAGGACGGA 59.354 41.667 0.00 0.00 44.45 4.69
251 252 3.521947 AAGTATTTTCGGAGGACGGAG 57.478 47.619 0.00 0.00 44.45 4.63
252 253 1.755380 AGTATTTTCGGAGGACGGAGG 59.245 52.381 0.00 0.00 44.45 4.30
253 254 1.117150 TATTTTCGGAGGACGGAGGG 58.883 55.000 0.00 0.00 44.45 4.30
256 257 2.436596 TTTCGGAGGACGGAGGGAGT 62.437 60.000 0.00 0.00 44.45 3.85
264 265 2.022934 GGACGGAGGGAGTAGTTAGTG 58.977 57.143 0.00 0.00 0.00 2.74
267 268 3.354467 ACGGAGGGAGTAGTTAGTGAAG 58.646 50.000 0.00 0.00 0.00 3.02
275 276 3.262420 AGTAGTTAGTGAAGCATTGCCG 58.738 45.455 4.70 0.00 0.00 5.69
303 304 2.876368 AAGCAATCCCCTCGCTTCCG 62.876 60.000 0.00 0.00 42.11 4.30
981 9140 1.531748 GCCGATCCCCAATTCCAGA 59.468 57.895 0.00 0.00 0.00 3.86
1352 10760 4.406069 CATTATGCACAAGAGTTTCGGTG 58.594 43.478 0.00 0.00 32.36 4.94
1375 10783 2.197577 GCTTTACTCATCAGAGACCGC 58.802 52.381 0.00 0.00 44.98 5.68
1376 10784 2.417379 GCTTTACTCATCAGAGACCGCA 60.417 50.000 0.00 0.00 44.98 5.69
1443 10857 1.741525 CCACAACCCAGCACTTTGG 59.258 57.895 0.00 0.00 38.00 3.28
1725 15114 5.630415 TGAATTCGGGGAACTTAGATCAT 57.370 39.130 0.04 0.00 0.00 2.45
1733 15122 4.949856 GGGGAACTTAGATCATCTTGCAAA 59.050 41.667 0.00 0.00 0.00 3.68
1991 18266 9.961265 ATTAGTTGCTCAAATGAATGTCATATG 57.039 29.630 0.00 0.00 35.76 1.78
2413 18803 5.197451 TCTTGCGGGAATAATGTTATGGTT 58.803 37.500 0.00 0.00 0.00 3.67
2416 18890 7.504238 TCTTGCGGGAATAATGTTATGGTTATT 59.496 33.333 0.00 0.00 34.23 1.40
2456 18942 4.260784 GGTTCTCTTGACAATGTGACACAC 60.261 45.833 11.22 0.00 34.56 3.82
2489 18983 8.533569 AAAACTGGAAGAGAACTTAATGGAAA 57.466 30.769 0.00 0.00 37.43 3.13
2587 19088 6.024552 TGGAAGCTGAAACCAATTGAATAC 57.975 37.500 7.12 0.00 0.00 1.89
2683 19210 5.643379 TCATGGCTCAGTGTTATTTTTCC 57.357 39.130 0.00 0.00 0.00 3.13
2925 19524 6.505272 ACGTAACTTTATCTCCTAGACATGC 58.495 40.000 0.00 0.00 0.00 4.06
3091 19723 8.979574 CGGAACATAAGTAATTCAGAATCCTAC 58.020 37.037 0.00 0.00 0.00 3.18
3127 20873 6.427853 TCTCGTTACTACACACTGCTAAGTAA 59.572 38.462 0.00 0.00 33.79 2.24
3128 20874 6.969366 TCGTTACTACACACTGCTAAGTAAA 58.031 36.000 0.00 0.00 35.17 2.01
3129 20875 6.857964 TCGTTACTACACACTGCTAAGTAAAC 59.142 38.462 0.00 0.00 35.17 2.01
3134 20880 2.484264 CACACTGCTAAGTAAACCCAGC 59.516 50.000 0.00 0.00 33.79 4.85
3136 20882 1.702957 ACTGCTAAGTAAACCCAGCCA 59.297 47.619 0.00 0.00 33.79 4.75
3137 20883 2.107552 ACTGCTAAGTAAACCCAGCCAA 59.892 45.455 0.00 0.00 33.79 4.52
3138 20884 2.749621 CTGCTAAGTAAACCCAGCCAAG 59.250 50.000 0.00 0.00 32.97 3.61
3139 20885 2.107552 TGCTAAGTAAACCCAGCCAAGT 59.892 45.455 0.00 0.00 32.97 3.16
3140 20886 2.747989 GCTAAGTAAACCCAGCCAAGTC 59.252 50.000 0.00 0.00 0.00 3.01
3141 20887 3.809324 GCTAAGTAAACCCAGCCAAGTCA 60.809 47.826 0.00 0.00 0.00 3.41
3142 20888 2.271944 AGTAAACCCAGCCAAGTCAC 57.728 50.000 0.00 0.00 0.00 3.67
3143 20889 1.774856 AGTAAACCCAGCCAAGTCACT 59.225 47.619 0.00 0.00 0.00 3.41
3317 21076 1.797320 TCCCTCCGTCCGGAATTAAT 58.203 50.000 5.23 0.00 44.66 1.40
3322 21081 3.431766 CCTCCGTCCGGAATTAATTGTCT 60.432 47.826 5.23 0.00 44.66 3.41
3335 21094 8.734386 GGAATTAATTGTCTCTGAAATGAGTGT 58.266 33.333 5.17 0.00 35.68 3.55
3341 21100 9.593134 AATTGTCTCTGAAATGAGTGTATCTAC 57.407 33.333 0.00 0.00 35.68 2.59
3342 21101 7.703058 TGTCTCTGAAATGAGTGTATCTACA 57.297 36.000 0.00 0.00 35.68 2.74
3380 21139 4.820897 AGATACACTCATTTCAGCGACAA 58.179 39.130 0.00 0.00 0.00 3.18
3447 21206 3.405823 AAAATGGTGGTCAAAGGCATG 57.594 42.857 0.00 0.00 0.00 4.06
3456 21215 1.135460 GTCAAAGGCATGAAGCTCTGC 60.135 52.381 0.00 7.21 44.79 4.26
3653 21816 7.072177 TCTGTTGTCTTGCTATTTATTTCCG 57.928 36.000 0.00 0.00 0.00 4.30
3814 22259 3.750130 CGATGATCCATTCCCATCTGAAC 59.250 47.826 0.00 0.00 35.71 3.18
3833 22278 5.785243 TGAACATTGATCCGTTGTAGTGTA 58.215 37.500 0.00 0.00 0.00 2.90
3852 22422 5.749109 AGTGTATACTTATCAAGCGTGAAGC 59.251 40.000 6.39 0.00 39.30 3.86
3864 22434 2.113774 TGAAGCACACCTGCAGGG 59.886 61.111 35.42 25.43 46.97 4.45
3867 22437 2.680974 GAAGCACACCTGCAGGGACA 62.681 60.000 35.42 0.00 46.97 4.02
3874 22444 0.466189 ACCTGCAGGGACAAACTGTG 60.466 55.000 35.42 7.17 40.27 3.66
3888 22458 7.362315 GGGACAAACTGTGTAACTTGTTAGTTT 60.362 37.037 6.40 6.40 44.07 2.66
4014 22846 3.322541 TCCGTTGTAGACTGAATCCACAA 59.677 43.478 0.00 0.00 0.00 3.33
4015 22847 4.020573 TCCGTTGTAGACTGAATCCACAAT 60.021 41.667 0.00 0.00 32.27 2.71
4049 23565 2.976692 AATGATCTGATCGCGGCGCA 62.977 55.000 32.61 19.09 0.00 6.09
4053 23569 3.323136 CTGATCGCGGCGCACTAC 61.323 66.667 32.61 18.93 0.00 2.73
4061 23577 2.436115 GGCGCACTACAGAACCCC 60.436 66.667 10.83 0.00 0.00 4.95
4062 23578 2.345991 GCGCACTACAGAACCCCA 59.654 61.111 0.30 0.00 0.00 4.96
4152 23696 2.036933 GAGCGCAAAAGAAACACTTCG 58.963 47.619 11.47 0.00 37.93 3.79
4189 25009 1.959282 GATTCCATGTGGATTCTGGCC 59.041 52.381 13.89 0.00 44.98 5.36
4195 25015 1.303317 GTGGATTCTGGCCGTGGTT 60.303 57.895 0.00 0.00 0.00 3.67
4197 25017 2.700773 GGATTCTGGCCGTGGTTGC 61.701 63.158 0.00 0.00 0.00 4.17
4240 25061 1.650912 GCGGTGGTGATGATGCATC 59.349 57.895 20.14 20.14 40.88 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.731819 GAGTGACTCGACAACAATTATCTTATA 57.268 33.333 0.00 0.00 0.00 0.98
19 20 8.251026 TGAGTGACTCGACAACAATTATCTTAT 58.749 33.333 8.23 0.00 32.35 1.73
20 21 7.599171 TGAGTGACTCGACAACAATTATCTTA 58.401 34.615 8.23 0.00 32.35 2.10
21 22 6.455647 TGAGTGACTCGACAACAATTATCTT 58.544 36.000 8.23 0.00 32.35 2.40
22 23 6.025749 TGAGTGACTCGACAACAATTATCT 57.974 37.500 8.23 0.00 32.35 1.98
23 24 6.706055 TTGAGTGACTCGACAACAATTATC 57.294 37.500 8.23 0.00 32.35 1.75
24 25 7.672983 ATTTGAGTGACTCGACAACAATTAT 57.327 32.000 8.23 0.00 32.35 1.28
26 27 7.672983 ATATTTGAGTGACTCGACAACAATT 57.327 32.000 8.23 0.00 32.35 2.32
28 29 7.201522 GCATATATTTGAGTGACTCGACAACAA 60.202 37.037 8.23 0.00 32.35 2.83
30 31 6.255670 TGCATATATTTGAGTGACTCGACAAC 59.744 38.462 8.23 0.00 32.35 3.32
31 32 6.255670 GTGCATATATTTGAGTGACTCGACAA 59.744 38.462 8.23 1.28 32.35 3.18
34 35 5.979517 CAGTGCATATATTTGAGTGACTCGA 59.020 40.000 8.23 2.78 32.35 4.04
36 37 7.095857 GCTACAGTGCATATATTTGAGTGACTC 60.096 40.741 5.47 5.47 0.00 3.36
37 38 6.703607 GCTACAGTGCATATATTTGAGTGACT 59.296 38.462 0.00 0.00 0.00 3.41
39 40 5.991606 GGCTACAGTGCATATATTTGAGTGA 59.008 40.000 0.00 0.00 34.04 3.41
40 41 5.994054 AGGCTACAGTGCATATATTTGAGTG 59.006 40.000 0.00 0.00 34.04 3.51
42 43 5.994054 ACAGGCTACAGTGCATATATTTGAG 59.006 40.000 0.00 0.00 34.04 3.02
43 44 5.928976 ACAGGCTACAGTGCATATATTTGA 58.071 37.500 0.00 0.00 34.04 2.69
44 45 6.128445 GCTACAGGCTACAGTGCATATATTTG 60.128 42.308 0.00 0.00 38.06 2.32
45 46 5.934625 GCTACAGGCTACAGTGCATATATTT 59.065 40.000 0.00 0.00 38.06 1.40
47 48 4.528206 TGCTACAGGCTACAGTGCATATAT 59.472 41.667 0.00 0.00 42.39 0.86
48 49 3.895041 TGCTACAGGCTACAGTGCATATA 59.105 43.478 0.00 0.00 42.39 0.86
50 51 2.101415 CTGCTACAGGCTACAGTGCATA 59.899 50.000 0.00 0.00 42.39 3.14
54 55 1.468224 CGACTGCTACAGGCTACAGTG 60.468 57.143 14.07 0.00 43.16 3.66
55 56 0.811915 CGACTGCTACAGGCTACAGT 59.188 55.000 10.32 10.32 45.66 3.55
56 57 0.526524 GCGACTGCTACAGGCTACAG 60.527 60.000 0.00 0.00 37.36 2.74
58 59 0.802607 GTGCGACTGCTACAGGCTAC 60.803 60.000 0.00 0.00 37.36 3.58
59 60 1.248101 TGTGCGACTGCTACAGGCTA 61.248 55.000 0.00 0.00 37.36 3.93
61 62 2.048222 TGTGCGACTGCTACAGGC 60.048 61.111 0.00 0.00 43.34 4.85
62 63 0.734253 GTCTGTGCGACTGCTACAGG 60.734 60.000 14.95 3.43 43.88 4.00
63 64 0.039165 TGTCTGTGCGACTGCTACAG 60.039 55.000 11.17 11.17 44.48 2.74
66 67 1.000843 ACAATGTCTGTGCGACTGCTA 59.999 47.619 0.00 0.00 43.25 3.49
67 68 0.250038 ACAATGTCTGTGCGACTGCT 60.250 50.000 0.00 0.00 43.25 4.24
68 69 1.126846 GTACAATGTCTGTGCGACTGC 59.873 52.381 0.00 0.00 43.25 4.40
69 70 2.677199 AGTACAATGTCTGTGCGACTG 58.323 47.619 0.00 0.00 44.70 3.51
70 71 3.506455 ACTAGTACAATGTCTGTGCGACT 59.494 43.478 0.00 0.00 44.70 4.18
71 72 3.834610 ACTAGTACAATGTCTGTGCGAC 58.165 45.455 0.00 0.00 44.70 5.19
72 73 4.095932 CCTACTAGTACAATGTCTGTGCGA 59.904 45.833 0.00 0.00 44.70 5.10
73 74 4.095932 TCCTACTAGTACAATGTCTGTGCG 59.904 45.833 0.00 0.00 44.70 5.34
74 75 5.578005 TCCTACTAGTACAATGTCTGTGC 57.422 43.478 0.00 0.00 39.20 4.57
85 86 9.490379 CATCCAACCAATTAATCCTACTAGTAC 57.510 37.037 0.00 0.00 0.00 2.73
88 89 7.227156 AGCATCCAACCAATTAATCCTACTAG 58.773 38.462 0.00 0.00 0.00 2.57
89 90 7.149202 AGCATCCAACCAATTAATCCTACTA 57.851 36.000 0.00 0.00 0.00 1.82
108 109 2.484594 GGGCAGAAAGTAGAGGAGCATC 60.485 54.545 0.00 0.00 0.00 3.91
110 111 0.905357 GGGCAGAAAGTAGAGGAGCA 59.095 55.000 0.00 0.00 0.00 4.26
111 112 1.138069 GAGGGCAGAAAGTAGAGGAGC 59.862 57.143 0.00 0.00 0.00 4.70
112 113 2.745968 AGAGGGCAGAAAGTAGAGGAG 58.254 52.381 0.00 0.00 0.00 3.69
113 114 2.930109 AGAGGGCAGAAAGTAGAGGA 57.070 50.000 0.00 0.00 0.00 3.71
114 115 6.732896 TTTATAGAGGGCAGAAAGTAGAGG 57.267 41.667 0.00 0.00 0.00 3.69
115 116 9.699703 GTATTTTATAGAGGGCAGAAAGTAGAG 57.300 37.037 0.00 0.00 0.00 2.43
116 117 9.435570 AGTATTTTATAGAGGGCAGAAAGTAGA 57.564 33.333 0.00 0.00 0.00 2.59
117 118 9.699703 GAGTATTTTATAGAGGGCAGAAAGTAG 57.300 37.037 0.00 0.00 0.00 2.57
119 120 7.988028 GTGAGTATTTTATAGAGGGCAGAAAGT 59.012 37.037 0.00 0.00 0.00 2.66
120 121 8.207545 AGTGAGTATTTTATAGAGGGCAGAAAG 58.792 37.037 0.00 0.00 0.00 2.62
121 122 8.090788 AGTGAGTATTTTATAGAGGGCAGAAA 57.909 34.615 0.00 0.00 0.00 2.52
123 124 6.267928 GGAGTGAGTATTTTATAGAGGGCAGA 59.732 42.308 0.00 0.00 0.00 4.26
124 125 6.459923 GGAGTGAGTATTTTATAGAGGGCAG 58.540 44.000 0.00 0.00 0.00 4.85
125 126 5.010719 CGGAGTGAGTATTTTATAGAGGGCA 59.989 44.000 0.00 0.00 0.00 5.36
126 127 5.010820 ACGGAGTGAGTATTTTATAGAGGGC 59.989 44.000 0.00 0.00 42.51 5.19
145 146 4.216687 GGGATGTATCTAGAACTGACGGAG 59.783 50.000 0.00 0.00 0.00 4.63
146 147 4.141228 AGGGATGTATCTAGAACTGACGGA 60.141 45.833 0.00 0.00 0.00 4.69
147 148 4.145807 AGGGATGTATCTAGAACTGACGG 58.854 47.826 0.00 0.00 0.00 4.79
148 149 5.776173 AAGGGATGTATCTAGAACTGACG 57.224 43.478 0.00 0.00 0.00 4.35
221 222 9.760077 GTCCTCCGAAAATACTTATCATCTAAA 57.240 33.333 0.00 0.00 0.00 1.85
222 223 8.080417 CGTCCTCCGAAAATACTTATCATCTAA 58.920 37.037 0.00 0.00 39.56 2.10
223 224 7.309012 CCGTCCTCCGAAAATACTTATCATCTA 60.309 40.741 0.00 0.00 39.56 1.98
224 225 6.448006 CGTCCTCCGAAAATACTTATCATCT 58.552 40.000 0.00 0.00 39.56 2.90
225 226 5.634020 CCGTCCTCCGAAAATACTTATCATC 59.366 44.000 0.00 0.00 39.56 2.92
226 227 5.303589 TCCGTCCTCCGAAAATACTTATCAT 59.696 40.000 0.00 0.00 39.56 2.45
228 229 5.192327 TCCGTCCTCCGAAAATACTTATC 57.808 43.478 0.00 0.00 39.56 1.75
230 231 3.382546 CCTCCGTCCTCCGAAAATACTTA 59.617 47.826 0.00 0.00 39.56 2.24
231 232 2.167900 CCTCCGTCCTCCGAAAATACTT 59.832 50.000 0.00 0.00 39.56 2.24
232 233 1.755380 CCTCCGTCCTCCGAAAATACT 59.245 52.381 0.00 0.00 39.56 2.12
233 234 1.202498 CCCTCCGTCCTCCGAAAATAC 60.202 57.143 0.00 0.00 39.56 1.89
234 235 1.117150 CCCTCCGTCCTCCGAAAATA 58.883 55.000 0.00 0.00 39.56 1.40
235 236 0.616679 TCCCTCCGTCCTCCGAAAAT 60.617 55.000 0.00 0.00 39.56 1.82
237 238 1.681327 CTCCCTCCGTCCTCCGAAA 60.681 63.158 0.00 0.00 39.56 3.46
238 239 1.565390 TACTCCCTCCGTCCTCCGAA 61.565 60.000 0.00 0.00 39.56 4.30
239 240 1.980784 CTACTCCCTCCGTCCTCCGA 61.981 65.000 0.00 0.00 39.56 4.55
240 241 1.526455 CTACTCCCTCCGTCCTCCG 60.526 68.421 0.00 0.00 0.00 4.63
242 243 2.092484 ACTAACTACTCCCTCCGTCCTC 60.092 54.545 0.00 0.00 0.00 3.71
243 244 1.921748 ACTAACTACTCCCTCCGTCCT 59.078 52.381 0.00 0.00 0.00 3.85
244 245 2.022934 CACTAACTACTCCCTCCGTCC 58.977 57.143 0.00 0.00 0.00 4.79
245 246 2.996631 TCACTAACTACTCCCTCCGTC 58.003 52.381 0.00 0.00 0.00 4.79
246 247 3.354467 CTTCACTAACTACTCCCTCCGT 58.646 50.000 0.00 0.00 0.00 4.69
247 248 2.099427 GCTTCACTAACTACTCCCTCCG 59.901 54.545 0.00 0.00 0.00 4.63
248 249 3.097614 TGCTTCACTAACTACTCCCTCC 58.902 50.000 0.00 0.00 0.00 4.30
249 250 5.112686 CAATGCTTCACTAACTACTCCCTC 58.887 45.833 0.00 0.00 0.00 4.30
250 251 4.624125 GCAATGCTTCACTAACTACTCCCT 60.624 45.833 0.00 0.00 0.00 4.20
251 252 3.623510 GCAATGCTTCACTAACTACTCCC 59.376 47.826 0.00 0.00 0.00 4.30
252 253 3.623510 GGCAATGCTTCACTAACTACTCC 59.376 47.826 4.82 0.00 0.00 3.85
253 254 3.307242 CGGCAATGCTTCACTAACTACTC 59.693 47.826 4.82 0.00 0.00 2.59
256 257 3.603158 TCGGCAATGCTTCACTAACTA 57.397 42.857 4.82 0.00 0.00 2.24
264 265 0.726827 TGACGATTCGGCAATGCTTC 59.273 50.000 13.21 0.00 44.01 3.86
275 276 2.356069 GAGGGGATTGCTTTGACGATTC 59.644 50.000 0.00 0.00 0.00 2.52
439 442 2.259818 CAGCGCAACTCCTCTCGT 59.740 61.111 11.47 0.00 0.00 4.18
996 9158 3.959991 GAGGAGGCTTGCCGTGGTC 62.960 68.421 5.95 0.00 0.00 4.02
1352 10760 3.526534 GGTCTCTGATGAGTAAAGCCAC 58.473 50.000 0.00 0.00 40.98 5.01
1375 10783 2.684881 GAGTTGATGTTGCCCCATACTG 59.315 50.000 0.00 0.00 0.00 2.74
1376 10784 2.308570 TGAGTTGATGTTGCCCCATACT 59.691 45.455 0.00 0.00 0.00 2.12
1443 10857 2.368548 ACCAGCAAAAGGAATTCCCAAC 59.631 45.455 21.22 6.67 37.41 3.77
1725 15114 0.108585 AGGAAGTCGCCTTTGCAAGA 59.891 50.000 0.00 0.00 33.46 3.02
1733 15122 0.035458 CCAAAGTGAGGAAGTCGCCT 59.965 55.000 0.00 0.00 42.17 5.52
1991 18266 5.065602 TCAATCATCAGCATAACACTCAAGC 59.934 40.000 0.00 0.00 0.00 4.01
2041 18320 7.972832 TCTTTTAAAGAACTCATTAAGCGGA 57.027 32.000 4.77 0.00 33.83 5.54
2378 18751 4.124851 TCCCGCAAGAGAAAAGATACTC 57.875 45.455 0.00 0.00 43.02 2.59
2413 18803 1.448985 GCGGTCCAGTGCTGAAAATA 58.551 50.000 0.02 0.00 0.00 1.40
2416 18890 2.664851 CGCGGTCCAGTGCTGAAA 60.665 61.111 0.00 0.00 0.00 2.69
2456 18942 8.889717 TAAGTTCTCTTCCAGTTTTAACTGTTG 58.110 33.333 18.41 9.86 42.85 3.33
2468 18962 8.340618 TCAATTTCCATTAAGTTCTCTTCCAG 57.659 34.615 0.00 0.00 35.36 3.86
2489 18983 2.649531 TCGGTTGTTTGGGTCTCAAT 57.350 45.000 0.00 0.00 34.98 2.57
2656 19181 7.472334 AAAATAACACTGAGCCATGAAGAAT 57.528 32.000 0.00 0.00 0.00 2.40
2683 19210 6.763355 AGAGGTGCATAGTTATGTAATCTGG 58.237 40.000 0.00 0.00 36.11 3.86
2960 19573 3.458163 CAGCCAAGCCCATGCAGG 61.458 66.667 0.00 0.00 41.13 4.85
3091 19723 9.059485 GTGTGTAGTAACGAGAATTGTACTAAG 57.941 37.037 0.00 0.00 27.90 2.18
3100 19732 4.785511 AGCAGTGTGTAGTAACGAGAAT 57.214 40.909 0.00 0.00 0.00 2.40
3104 19736 6.558771 TTACTTAGCAGTGTGTAGTAACGA 57.441 37.500 0.00 0.00 34.06 3.85
3127 20873 1.774856 ACTTAGTGACTTGGCTGGGTT 59.225 47.619 0.00 0.00 0.00 4.11
3128 20874 1.348036 GACTTAGTGACTTGGCTGGGT 59.652 52.381 0.00 0.00 0.00 4.51
3129 20875 1.347707 TGACTTAGTGACTTGGCTGGG 59.652 52.381 0.00 0.00 0.00 4.45
3134 20880 4.153117 GCAACATCTGACTTAGTGACTTGG 59.847 45.833 0.00 0.00 0.00 3.61
3136 20882 5.220710 AGCAACATCTGACTTAGTGACTT 57.779 39.130 0.00 0.00 0.00 3.01
3137 20883 4.881019 AGCAACATCTGACTTAGTGACT 57.119 40.909 0.00 0.00 0.00 3.41
3138 20884 5.931441 AAAGCAACATCTGACTTAGTGAC 57.069 39.130 0.00 0.00 0.00 3.67
3139 20885 5.822519 ACAAAAGCAACATCTGACTTAGTGA 59.177 36.000 0.00 0.00 0.00 3.41
3140 20886 6.064846 ACAAAAGCAACATCTGACTTAGTG 57.935 37.500 0.00 0.00 0.00 2.74
3141 20887 6.699575 AACAAAAGCAACATCTGACTTAGT 57.300 33.333 0.00 0.00 0.00 2.24
3142 20888 7.992180 AAAACAAAAGCAACATCTGACTTAG 57.008 32.000 0.00 0.00 0.00 2.18
3294 21053 1.046204 ATTCCGGACGGAGGGATTAC 58.954 55.000 13.64 0.00 46.06 1.89
3297 21056 1.797320 TTAATTCCGGACGGAGGGAT 58.203 50.000 13.64 2.10 46.06 3.85
3317 21076 8.122472 TGTAGATACACTCATTTCAGAGACAA 57.878 34.615 0.00 0.00 38.98 3.18
3335 21094 5.324784 AGACGCATTTCAGTGTGTAGATA 57.675 39.130 0.00 0.00 42.45 1.98
3336 21095 4.193826 AGACGCATTTCAGTGTGTAGAT 57.806 40.909 0.00 0.00 42.45 1.98
3337 21096 3.660501 AGACGCATTTCAGTGTGTAGA 57.339 42.857 0.00 0.00 42.45 2.59
3338 21097 4.733850 TCTAGACGCATTTCAGTGTGTAG 58.266 43.478 5.72 5.72 43.35 2.74
3339 21098 4.776795 TCTAGACGCATTTCAGTGTGTA 57.223 40.909 0.00 0.00 42.45 2.90
3340 21099 3.660501 TCTAGACGCATTTCAGTGTGT 57.339 42.857 0.00 0.00 44.85 3.72
3341 21100 5.004821 GTGTATCTAGACGCATTTCAGTGTG 59.995 44.000 0.00 0.00 35.76 3.82
3342 21101 5.103000 GTGTATCTAGACGCATTTCAGTGT 58.897 41.667 0.00 0.00 34.40 3.55
3343 21102 5.344066 AGTGTATCTAGACGCATTTCAGTG 58.656 41.667 0.00 0.00 32.03 3.66
3344 21103 5.125578 TGAGTGTATCTAGACGCATTTCAGT 59.874 40.000 0.00 0.00 32.03 3.41
3345 21104 5.582550 TGAGTGTATCTAGACGCATTTCAG 58.417 41.667 0.00 0.00 32.03 3.02
3346 21105 5.576447 TGAGTGTATCTAGACGCATTTCA 57.424 39.130 0.00 3.52 32.03 2.69
3351 21110 5.576447 TGAAATGAGTGTATCTAGACGCA 57.424 39.130 0.00 0.00 34.21 5.24
3380 21139 4.569719 ACAACCTCTGTCCGGAATTAAT 57.430 40.909 5.23 0.00 29.87 1.40
3447 21206 4.448537 TTAGAAGTCAGAGCAGAGCTTC 57.551 45.455 0.00 0.00 39.88 3.86
3626 21789 9.860898 GGAAATAAATAGCAAGACAACAGAAAT 57.139 29.630 0.00 0.00 0.00 2.17
3653 21816 5.554636 GCAGTATAATGCAAGTATCATCGC 58.445 41.667 19.67 0.00 45.77 4.58
3681 22040 4.401202 TGCAACTGTCTAGAATATCACGGA 59.599 41.667 0.00 0.00 0.00 4.69
3814 22259 9.692749 ATAAGTATACACTACAACGGATCAATG 57.307 33.333 5.50 0.00 33.48 2.82
3833 22278 4.330074 GTGTGCTTCACGCTTGATAAGTAT 59.670 41.667 0.00 0.00 41.09 2.12
3852 22422 0.466189 AGTTTGTCCCTGCAGGTGTG 60.466 55.000 30.63 16.20 36.75 3.82
3864 22434 7.695201 GGAAACTAACAAGTTACACAGTTTGTC 59.305 37.037 13.35 4.08 39.91 3.18
3867 22437 6.660094 TGGGAAACTAACAAGTTACACAGTTT 59.340 34.615 9.93 9.93 0.00 2.66
3940 22681 0.177604 GACCATCACTGCTAGCTGCT 59.822 55.000 20.35 7.57 43.37 4.24
4014 22846 5.710567 CAGATCATTCACATAAGGCCATCAT 59.289 40.000 5.01 0.00 0.00 2.45
4015 22847 5.067954 CAGATCATTCACATAAGGCCATCA 58.932 41.667 5.01 0.00 0.00 3.07
4049 23565 1.923909 GGGGCTGGGGTTCTGTAGT 60.924 63.158 0.00 0.00 0.00 2.73
4053 23569 4.748144 GCTGGGGCTGGGGTTCTG 62.748 72.222 0.00 0.00 35.22 3.02
4152 23696 2.015736 ATCATCGACCTGTTGCTGAC 57.984 50.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.