Multiple sequence alignment - TraesCS3B01G385200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G385200 chr3B 100.000 5832 0 0 1 5832 605440023 605445854 0.000000e+00 10770.0
1 TraesCS3B01G385200 chr3B 92.500 800 56 2 5033 5832 612315141 612314346 0.000000e+00 1142.0
2 TraesCS3B01G385200 chr3B 90.274 802 77 1 5031 5832 62529794 62530594 0.000000e+00 1048.0
3 TraesCS3B01G385200 chr3B 91.707 205 9 2 4824 5020 605481934 605482138 1.600000e-70 278.0
4 TraesCS3B01G385200 chr3A 93.394 2407 113 23 2642 5031 600673040 600675417 0.000000e+00 3522.0
5 TraesCS3B01G385200 chr3A 86.847 2106 132 67 567 2575 600670983 600673040 0.000000e+00 2220.0
6 TraesCS3B01G385200 chr3A 83.507 479 27 8 1 459 600670534 600670980 3.270000e-107 399.0
7 TraesCS3B01G385200 chr3A 95.098 102 5 0 459 560 686240813 686240712 1.680000e-35 161.0
8 TraesCS3B01G385200 chr3D 94.250 2313 108 8 2660 4959 458178419 458176119 0.000000e+00 3511.0
9 TraesCS3B01G385200 chr3D 87.825 1232 82 34 1341 2557 458179733 458178555 0.000000e+00 1382.0
10 TraesCS3B01G385200 chr3D 84.986 706 42 30 605 1272 458180431 458179752 0.000000e+00 658.0
11 TraesCS3B01G385200 chr3D 78.656 506 54 19 1 456 458180963 458180462 2.660000e-73 287.0
12 TraesCS3B01G385200 chr3D 91.463 82 4 1 4942 5020 458176093 458176012 6.180000e-20 110.0
13 TraesCS3B01G385200 chr1D 92.674 819 56 4 5015 5832 467474952 467475767 0.000000e+00 1177.0
14 TraesCS3B01G385200 chr1D 89.916 119 10 2 455 571 352815530 352815412 1.010000e-32 152.0
15 TraesCS3B01G385200 chr1B 92.643 802 55 2 5031 5832 199667122 199667919 0.000000e+00 1151.0
16 TraesCS3B01G385200 chr1B 95.098 102 5 0 459 560 413985364 413985465 1.680000e-35 161.0
17 TraesCS3B01G385200 chr4B 91.532 803 65 3 5031 5832 575617064 575617864 0.000000e+00 1103.0
18 TraesCS3B01G385200 chr7A 91.521 802 63 4 5031 5832 641402654 641403450 0.000000e+00 1099.0
19 TraesCS3B01G385200 chr7A 83.271 269 27 10 2209 2471 653361280 653361536 1.260000e-56 231.0
20 TraesCS3B01G385200 chr7A 100.000 99 0 0 458 556 134976577 134976479 3.590000e-42 183.0
21 TraesCS3B01G385200 chr4D 91.147 802 64 4 5031 5832 379506977 379507771 0.000000e+00 1081.0
22 TraesCS3B01G385200 chr1A 90.274 802 73 2 5031 5832 520788890 520788094 0.000000e+00 1044.0
23 TraesCS3B01G385200 chr1A 95.098 102 5 0 459 560 148610332 148610433 1.680000e-35 161.0
24 TraesCS3B01G385200 chr5B 90.368 789 73 3 5021 5809 695845595 695846380 0.000000e+00 1033.0
25 TraesCS3B01G385200 chr5B 92.727 55 3 1 1621 1674 189153095 189153149 1.740000e-10 78.7
26 TraesCS3B01G385200 chr7D 81.250 304 39 12 2620 2918 34966431 34966141 4.550000e-56 230.0
27 TraesCS3B01G385200 chr7B 83.740 246 26 10 2213 2457 619897420 619897188 2.740000e-53 220.0
28 TraesCS3B01G385200 chr7B 87.234 141 15 2 2339 2478 619884813 619884675 2.180000e-34 158.0
29 TraesCS3B01G385200 chr4A 95.146 103 5 0 458 560 695807616 695807718 4.680000e-36 163.0
30 TraesCS3B01G385200 chr2B 95.098 102 5 0 459 560 693737130 693737231 1.680000e-35 161.0
31 TraesCS3B01G385200 chr2A 95.098 102 5 0 459 560 39407509 39407408 1.680000e-35 161.0
32 TraesCS3B01G385200 chr6B 83.598 189 11 12 567 755 195887662 195887494 6.050000e-35 159.0
33 TraesCS3B01G385200 chrUn 90.517 116 7 4 459 571 135217611 135217497 3.640000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G385200 chr3B 605440023 605445854 5831 False 10770.0 10770 100.000 1 5832 1 chr3B.!!$F2 5831
1 TraesCS3B01G385200 chr3B 612314346 612315141 795 True 1142.0 1142 92.500 5033 5832 1 chr3B.!!$R1 799
2 TraesCS3B01G385200 chr3B 62529794 62530594 800 False 1048.0 1048 90.274 5031 5832 1 chr3B.!!$F1 801
3 TraesCS3B01G385200 chr3A 600670534 600675417 4883 False 2047.0 3522 87.916 1 5031 3 chr3A.!!$F1 5030
4 TraesCS3B01G385200 chr3D 458176012 458180963 4951 True 1189.6 3511 87.436 1 5020 5 chr3D.!!$R1 5019
5 TraesCS3B01G385200 chr1D 467474952 467475767 815 False 1177.0 1177 92.674 5015 5832 1 chr1D.!!$F1 817
6 TraesCS3B01G385200 chr1B 199667122 199667919 797 False 1151.0 1151 92.643 5031 5832 1 chr1B.!!$F1 801
7 TraesCS3B01G385200 chr4B 575617064 575617864 800 False 1103.0 1103 91.532 5031 5832 1 chr4B.!!$F1 801
8 TraesCS3B01G385200 chr7A 641402654 641403450 796 False 1099.0 1099 91.521 5031 5832 1 chr7A.!!$F1 801
9 TraesCS3B01G385200 chr4D 379506977 379507771 794 False 1081.0 1081 91.147 5031 5832 1 chr4D.!!$F1 801
10 TraesCS3B01G385200 chr1A 520788094 520788890 796 True 1044.0 1044 90.274 5031 5832 1 chr1A.!!$R1 801
11 TraesCS3B01G385200 chr5B 695845595 695846380 785 False 1033.0 1033 90.368 5021 5809 1 chr5B.!!$F2 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 533 0.108756 GTGCTACTCCCTCCGTTCAC 60.109 60.0 0.00 0.00 0.00 3.18 F
1391 1533 0.035439 TTCGAACTTCCCTCCATGGC 60.035 55.0 6.96 0.00 0.00 4.40 F
2597 2814 0.096281 TTCGCATCGTTTCATTCGGC 59.904 50.0 0.00 0.00 0.00 5.54 F
2640 2881 0.173481 GAAAGGAAATCTTGCCCGGC 59.827 55.0 1.04 1.04 35.55 6.13 F
2842 3083 0.884514 TGGTCTGTCTCGCTCTTGAG 59.115 55.0 0.00 0.00 37.33 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1728 0.103572 TTTATAGCCGCCCAGACGAC 59.896 55.000 0.00 0.0 34.06 4.34 R
2622 2863 0.251787 AGCCGGGCAAGATTTCCTTT 60.252 50.000 23.09 0.0 31.42 3.11 R
4267 4525 1.847328 TCTGGTCCATGAGCTCGTAA 58.153 50.000 8.44 0.0 0.00 3.18 R
4813 5071 2.098117 GCCTCATTTCTTCCACATTCCG 59.902 50.000 0.00 0.0 0.00 4.30 R
4841 5099 2.977914 ACTTGACATCAGTTGATCGGG 58.022 47.619 0.00 0.0 31.21 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.733443 TTCTTCTTTCCTTTTGCTGGC 57.267 42.857 0.00 0.00 0.00 4.85
38 39 2.408835 CGCGCTTTGGCTAATGGG 59.591 61.111 5.56 8.11 36.09 4.00
44 45 2.456577 GCTTTGGCTAATGGGAAGGAA 58.543 47.619 0.00 0.00 35.22 3.36
53 54 4.584743 GCTAATGGGAAGGAAATTAGGTGG 59.415 45.833 0.00 0.00 35.39 4.61
55 56 2.364190 TGGGAAGGAAATTAGGTGGGT 58.636 47.619 0.00 0.00 0.00 4.51
56 57 2.042433 TGGGAAGGAAATTAGGTGGGTG 59.958 50.000 0.00 0.00 0.00 4.61
68 69 7.739498 AATTAGGTGGGTGCGTATTTAATAG 57.261 36.000 0.00 0.00 0.00 1.73
106 112 4.201783 GGATGTACACGTACTTGCCATTTC 60.202 45.833 0.00 0.00 37.00 2.17
108 114 1.153353 ACACGTACTTGCCATTTCGG 58.847 50.000 0.00 0.00 38.11 4.30
119 125 2.008752 CCATTTCGGCCAACCATTTC 57.991 50.000 2.24 0.00 34.57 2.17
127 133 1.560505 GCCAACCATTTCTCCACCAT 58.439 50.000 0.00 0.00 0.00 3.55
128 134 1.901833 GCCAACCATTTCTCCACCATT 59.098 47.619 0.00 0.00 0.00 3.16
129 135 2.354003 GCCAACCATTTCTCCACCATTG 60.354 50.000 0.00 0.00 0.00 2.82
130 136 2.899256 CCAACCATTTCTCCACCATTGT 59.101 45.455 0.00 0.00 0.00 2.71
131 137 3.306225 CCAACCATTTCTCCACCATTGTG 60.306 47.826 0.00 0.00 42.39 3.33
193 211 1.224870 GGGGAGCTTGAGTAAGGGC 59.775 63.158 0.00 0.00 34.40 5.19
201 219 2.882324 CTTGAGTAAGGGCGAAGAGAC 58.118 52.381 0.00 0.00 0.00 3.36
202 235 0.809385 TGAGTAAGGGCGAAGAGACG 59.191 55.000 0.00 0.00 0.00 4.18
229 262 1.793414 AAACAAAAGGGCAAGCCTCT 58.207 45.000 11.40 3.71 36.10 3.69
364 418 3.365291 GACGCATGGTAGACGGCCA 62.365 63.158 2.24 0.00 40.68 5.36
460 520 3.070159 TGATGCCTCCTGATTAGTGCTAC 59.930 47.826 0.00 0.00 0.00 3.58
461 521 2.752030 TGCCTCCTGATTAGTGCTACT 58.248 47.619 0.00 0.00 0.00 2.57
462 522 2.695666 TGCCTCCTGATTAGTGCTACTC 59.304 50.000 0.00 0.00 0.00 2.59
463 523 2.036604 GCCTCCTGATTAGTGCTACTCC 59.963 54.545 0.00 0.00 0.00 3.85
464 524 2.630580 CCTCCTGATTAGTGCTACTCCC 59.369 54.545 0.00 0.00 0.00 4.30
465 525 3.571590 CTCCTGATTAGTGCTACTCCCT 58.428 50.000 0.00 0.00 0.00 4.20
466 526 3.567397 TCCTGATTAGTGCTACTCCCTC 58.433 50.000 0.00 0.00 0.00 4.30
467 527 2.630580 CCTGATTAGTGCTACTCCCTCC 59.369 54.545 0.00 0.00 0.00 4.30
468 528 2.294791 CTGATTAGTGCTACTCCCTCCG 59.705 54.545 0.00 0.00 0.00 4.63
469 529 2.308690 GATTAGTGCTACTCCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
470 530 2.226962 TTAGTGCTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
471 531 1.760192 TAGTGCTACTCCCTCCGTTC 58.240 55.000 0.00 0.00 0.00 3.95
472 532 0.251653 AGTGCTACTCCCTCCGTTCA 60.252 55.000 0.00 0.00 0.00 3.18
473 533 0.108756 GTGCTACTCCCTCCGTTCAC 60.109 60.000 0.00 0.00 0.00 3.18
474 534 0.251653 TGCTACTCCCTCCGTTCACT 60.252 55.000 0.00 0.00 0.00 3.41
475 535 0.896226 GCTACTCCCTCCGTTCACTT 59.104 55.000 0.00 0.00 0.00 3.16
476 536 1.275573 GCTACTCCCTCCGTTCACTTT 59.724 52.381 0.00 0.00 0.00 2.66
477 537 2.289506 GCTACTCCCTCCGTTCACTTTT 60.290 50.000 0.00 0.00 0.00 2.27
478 538 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
479 539 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
480 540 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
481 541 3.326880 ACTCCCTCCGTTCACTTTTGTAT 59.673 43.478 0.00 0.00 0.00 2.29
482 542 3.670625 TCCCTCCGTTCACTTTTGTATG 58.329 45.455 0.00 0.00 0.00 2.39
483 543 3.071892 TCCCTCCGTTCACTTTTGTATGT 59.928 43.478 0.00 0.00 0.00 2.29
484 544 3.435671 CCCTCCGTTCACTTTTGTATGTC 59.564 47.826 0.00 0.00 0.00 3.06
485 545 3.122948 CCTCCGTTCACTTTTGTATGTCG 59.877 47.826 0.00 0.00 0.00 4.35
486 546 3.719924 TCCGTTCACTTTTGTATGTCGT 58.280 40.909 0.00 0.00 0.00 4.34
487 547 4.121317 TCCGTTCACTTTTGTATGTCGTT 58.879 39.130 0.00 0.00 0.00 3.85
488 548 4.571580 TCCGTTCACTTTTGTATGTCGTTT 59.428 37.500 0.00 0.00 0.00 3.60
489 549 4.901881 CCGTTCACTTTTGTATGTCGTTTC 59.098 41.667 0.00 0.00 0.00 2.78
490 550 5.494618 CGTTCACTTTTGTATGTCGTTTCA 58.505 37.500 0.00 0.00 0.00 2.69
491 551 5.615581 CGTTCACTTTTGTATGTCGTTTCAG 59.384 40.000 0.00 0.00 0.00 3.02
492 552 6.508880 CGTTCACTTTTGTATGTCGTTTCAGA 60.509 38.462 0.00 0.00 0.00 3.27
493 553 6.281848 TCACTTTTGTATGTCGTTTCAGAC 57.718 37.500 0.00 0.00 41.30 3.51
507 567 8.832521 TGTCGTTTCAGACAACTTAAAATATGT 58.167 29.630 0.00 0.00 46.81 2.29
508 568 9.659830 GTCGTTTCAGACAACTTAAAATATGTT 57.340 29.630 0.00 0.00 40.65 2.71
509 569 9.658475 TCGTTTCAGACAACTTAAAATATGTTG 57.342 29.630 12.09 12.09 44.62 3.33
524 584 8.436046 AAAATATGTTGTTTTGCACATTGTCT 57.564 26.923 0.00 0.00 34.43 3.41
525 585 7.410800 AATATGTTGTTTTGCACATTGTCTG 57.589 32.000 0.00 0.00 34.43 3.51
526 586 4.446994 TGTTGTTTTGCACATTGTCTGA 57.553 36.364 0.00 0.00 34.43 3.27
527 587 4.814147 TGTTGTTTTGCACATTGTCTGAA 58.186 34.783 0.00 0.00 34.43 3.02
528 588 5.233225 TGTTGTTTTGCACATTGTCTGAAA 58.767 33.333 0.00 0.00 34.43 2.69
529 589 5.873712 TGTTGTTTTGCACATTGTCTGAAAT 59.126 32.000 0.00 0.00 34.43 2.17
530 590 7.038048 TGTTGTTTTGCACATTGTCTGAAATA 58.962 30.769 0.00 0.00 34.43 1.40
531 591 7.710044 TGTTGTTTTGCACATTGTCTGAAATAT 59.290 29.630 0.00 0.00 34.43 1.28
532 592 7.872163 TGTTTTGCACATTGTCTGAAATATC 57.128 32.000 0.00 0.00 0.00 1.63
533 593 7.660112 TGTTTTGCACATTGTCTGAAATATCT 58.340 30.769 0.00 0.00 0.00 1.98
534 594 8.143193 TGTTTTGCACATTGTCTGAAATATCTT 58.857 29.630 0.00 0.00 0.00 2.40
535 595 8.642020 GTTTTGCACATTGTCTGAAATATCTTC 58.358 33.333 0.00 0.00 0.00 2.87
536 596 7.451501 TTGCACATTGTCTGAAATATCTTCA 57.548 32.000 0.00 1.96 0.00 3.02
537 597 7.451501 TGCACATTGTCTGAAATATCTTCAA 57.548 32.000 0.00 0.00 0.00 2.69
538 598 7.532571 TGCACATTGTCTGAAATATCTTCAAG 58.467 34.615 0.00 0.00 0.00 3.02
539 599 6.971184 GCACATTGTCTGAAATATCTTCAAGG 59.029 38.462 0.00 0.00 0.00 3.61
540 600 7.362401 GCACATTGTCTGAAATATCTTCAAGGT 60.362 37.037 0.00 0.00 31.40 3.50
541 601 8.180267 CACATTGTCTGAAATATCTTCAAGGTC 58.820 37.037 0.00 0.00 30.13 3.85
542 602 8.105829 ACATTGTCTGAAATATCTTCAAGGTCT 58.894 33.333 0.00 0.00 0.00 3.85
543 603 8.954350 CATTGTCTGAAATATCTTCAAGGTCTT 58.046 33.333 0.00 0.00 0.00 3.01
557 617 8.726988 TCTTCAAGGTCTTATAAAAATGAACGG 58.273 33.333 0.00 0.00 0.00 4.44
558 618 8.624367 TTCAAGGTCTTATAAAAATGAACGGA 57.376 30.769 0.00 0.00 0.00 4.69
559 619 8.263940 TCAAGGTCTTATAAAAATGAACGGAG 57.736 34.615 0.00 0.00 0.00 4.63
560 620 8.098286 TCAAGGTCTTATAAAAATGAACGGAGA 58.902 33.333 0.00 0.00 0.00 3.71
561 621 8.726988 CAAGGTCTTATAAAAATGAACGGAGAA 58.273 33.333 0.00 0.00 0.00 2.87
562 622 8.857694 AGGTCTTATAAAAATGAACGGAGAAA 57.142 30.769 0.00 0.00 0.00 2.52
563 623 9.462606 AGGTCTTATAAAAATGAACGGAGAAAT 57.537 29.630 0.00 0.00 0.00 2.17
619 679 2.353011 GCTAAGTGGTTGCGGTACACTA 60.353 50.000 0.00 0.00 44.08 2.74
668 728 2.512355 GGCTAGCCTAGTCCAGCCC 61.512 68.421 27.17 0.00 46.47 5.19
695 755 3.005472 GGGAATGATGCGCTAGTAGTACA 59.995 47.826 9.73 0.00 0.00 2.90
750 821 1.067565 TCGTGCATGTGGAGAGAAGAC 60.068 52.381 5.68 0.00 0.00 3.01
770 841 2.302157 ACAGTGGTACTACAAAGAGCCC 59.698 50.000 12.29 0.00 0.00 5.19
902 990 1.536073 GCCCTTTTCTGCTTGTCCCC 61.536 60.000 0.00 0.00 0.00 4.81
1030 1129 1.737793 CCAAGACAAGGTATGTTCCGC 59.262 52.381 0.00 0.00 44.12 5.54
1046 1153 2.434185 GCTCGTTCGTGCCATCCA 60.434 61.111 7.83 0.00 0.00 3.41
1047 1154 2.032634 GCTCGTTCGTGCCATCCAA 61.033 57.895 7.83 0.00 0.00 3.53
1051 1158 2.359354 TTCGTGCCATCCAACCCG 60.359 61.111 0.00 0.00 0.00 5.28
1094 1209 1.314534 CCATCCATGTGCCGCTTGAA 61.315 55.000 0.00 0.00 0.00 2.69
1141 1257 3.807538 GGCGTCATGTGCTGCTGG 61.808 66.667 11.43 0.00 0.00 4.85
1142 1258 3.052082 GCGTCATGTGCTGCTGGT 61.052 61.111 0.00 0.00 0.00 4.00
1143 1259 1.741401 GCGTCATGTGCTGCTGGTA 60.741 57.895 0.00 0.00 0.00 3.25
1144 1260 1.699656 GCGTCATGTGCTGCTGGTAG 61.700 60.000 0.00 0.00 0.00 3.18
1157 1273 5.586243 TGCTGCTGGTAGTATTTGATTCTTC 59.414 40.000 0.00 0.00 0.00 2.87
1159 1275 5.116180 TGCTGGTAGTATTTGATTCTTCCG 58.884 41.667 0.00 0.00 0.00 4.30
1176 1318 4.764823 TCTTCCGTCCATGCTTTGTTTATT 59.235 37.500 0.00 0.00 0.00 1.40
1266 1408 0.599060 CAGTCAATGTGCATGCACCA 59.401 50.000 40.01 29.61 45.63 4.17
1276 1418 4.078537 TGTGCATGCACCAGTTTTACTAT 58.921 39.130 40.01 0.00 45.63 2.12
1283 1425 7.576856 GCATGCACCAGTTTTACTATTACCTTT 60.577 37.037 14.21 0.00 0.00 3.11
1291 1433 9.462606 CAGTTTTACTATTACCTTTCCCTTGAT 57.537 33.333 0.00 0.00 0.00 2.57
1302 1444 1.217244 CCCTTGATGCCAAAGCTGC 59.783 57.895 0.00 0.00 40.80 5.25
1306 1448 1.544691 CTTGATGCCAAAGCTGCTCTT 59.455 47.619 1.00 0.00 40.80 2.85
1308 1450 0.098376 GATGCCAAAGCTGCTCTTCG 59.902 55.000 1.00 0.00 40.80 3.79
1326 1468 1.666234 GATCTCGCCTTCATCCGGC 60.666 63.158 0.00 0.00 44.11 6.13
1337 1479 1.557099 TCATCCGGCTACTGTTCTGT 58.443 50.000 0.00 0.00 0.00 3.41
1370 1512 5.036117 AGTTTTGAGCAGAGTTAACCTGA 57.964 39.130 21.28 4.78 33.65 3.86
1379 1521 4.796618 GCAGAGTTAACCTGAGTTCGAACT 60.797 45.833 30.12 30.12 43.16 3.01
1385 1527 1.619332 ACCTGAGTTCGAACTTCCCTC 59.381 52.381 30.22 18.10 39.88 4.30
1389 1531 2.028112 TGAGTTCGAACTTCCCTCCATG 60.028 50.000 30.22 0.00 39.88 3.66
1390 1532 1.279271 AGTTCGAACTTCCCTCCATGG 59.721 52.381 24.93 4.97 35.21 3.66
1391 1533 0.035439 TTCGAACTTCCCTCCATGGC 60.035 55.000 6.96 0.00 0.00 4.40
1393 1535 0.462759 CGAACTTCCCTCCATGGCTC 60.463 60.000 6.96 0.00 0.00 4.70
1394 1536 0.106967 GAACTTCCCTCCATGGCTCC 60.107 60.000 6.96 0.00 0.00 4.70
1396 1538 0.625683 ACTTCCCTCCATGGCTCCAT 60.626 55.000 6.96 0.00 37.08 3.41
1398 1540 0.624206 TTCCCTCCATGGCTCCATCA 60.624 55.000 6.96 0.00 33.90 3.07
1400 1542 0.481567 CCCTCCATGGCTCCATCAAT 59.518 55.000 6.96 0.00 33.90 2.57
1401 1543 1.617322 CCTCCATGGCTCCATCAATG 58.383 55.000 6.96 0.00 33.90 2.82
1402 1544 1.133575 CCTCCATGGCTCCATCAATGT 60.134 52.381 6.96 0.00 33.90 2.71
1403 1545 2.107031 CCTCCATGGCTCCATCAATGTA 59.893 50.000 6.96 0.00 33.90 2.29
1405 1547 1.884579 CCATGGCTCCATCAATGTAGC 59.115 52.381 0.00 0.00 38.81 3.58
1407 1549 2.042686 TGGCTCCATCAATGTAGCAC 57.957 50.000 9.40 0.97 40.99 4.40
1408 1550 1.561076 TGGCTCCATCAATGTAGCACT 59.439 47.619 9.40 0.00 40.99 4.40
1409 1551 1.945394 GGCTCCATCAATGTAGCACTG 59.055 52.381 9.40 0.00 40.99 3.66
1410 1552 1.332997 GCTCCATCAATGTAGCACTGC 59.667 52.381 3.00 0.00 39.28 4.40
1447 1600 0.927029 AGGGGGATTAAACAGAGGCC 59.073 55.000 0.00 0.00 0.00 5.19
1496 1649 1.798223 GAGCACCAATCGCGCATATTA 59.202 47.619 8.75 0.00 0.00 0.98
1500 1653 2.058798 ACCAATCGCGCATATTAGTCG 58.941 47.619 8.75 0.00 0.00 4.18
1543 1696 6.914259 TCTTAATAGAGATGATCAATCGCGT 58.086 36.000 5.77 0.00 39.84 6.01
1549 1702 6.459257 AGAGATGATCAATCGCGTTAATTC 57.541 37.500 5.77 0.00 39.84 2.17
1572 1725 1.271163 CCCCGTGACATGTTAACCAGT 60.271 52.381 0.00 1.20 0.00 4.00
1573 1726 2.073816 CCCGTGACATGTTAACCAGTC 58.926 52.381 16.39 16.39 0.00 3.51
1574 1727 2.549134 CCCGTGACATGTTAACCAGTCA 60.549 50.000 20.06 20.06 38.56 3.41
1575 1728 2.736721 CCGTGACATGTTAACCAGTCAG 59.263 50.000 22.86 17.64 41.20 3.51
1580 1733 3.650139 ACATGTTAACCAGTCAGTCGTC 58.350 45.455 2.48 0.00 0.00 4.20
1596 1749 0.179094 CGTCTGGGCGGCTATAAACA 60.179 55.000 9.56 0.00 0.00 2.83
1631 1784 2.124411 AGTTCCTTACACACCACCACT 58.876 47.619 0.00 0.00 0.00 4.00
1718 1876 2.036604 TGACCGTGACTGTTTGCAGATA 59.963 45.455 1.30 0.00 45.28 1.98
1884 2047 1.819305 GCTTGCATATCACGGGGGATT 60.819 52.381 0.00 0.00 0.00 3.01
1938 2101 3.082701 GCTCCTGCCTGCCTCTCT 61.083 66.667 0.00 0.00 0.00 3.10
1939 2102 3.092780 GCTCCTGCCTGCCTCTCTC 62.093 68.421 0.00 0.00 0.00 3.20
1940 2103 1.381599 CTCCTGCCTGCCTCTCTCT 60.382 63.158 0.00 0.00 0.00 3.10
1941 2104 1.381056 TCCTGCCTGCCTCTCTCTC 60.381 63.158 0.00 0.00 0.00 3.20
1942 2105 2.433994 CCTGCCTGCCTCTCTCTCC 61.434 68.421 0.00 0.00 0.00 3.71
1943 2106 2.364842 TGCCTGCCTCTCTCTCCC 60.365 66.667 0.00 0.00 0.00 4.30
1944 2107 2.042025 GCCTGCCTCTCTCTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
1945 2108 2.133641 GCCTGCCTCTCTCTCCCTC 61.134 68.421 0.00 0.00 0.00 4.30
1946 2109 1.457455 CCTGCCTCTCTCTCCCTCC 60.457 68.421 0.00 0.00 0.00 4.30
1947 2110 1.457455 CTGCCTCTCTCTCCCTCCC 60.457 68.421 0.00 0.00 0.00 4.30
1948 2111 1.938596 TGCCTCTCTCTCCCTCCCT 60.939 63.158 0.00 0.00 0.00 4.20
1949 2112 1.152546 GCCTCTCTCTCCCTCCCTC 60.153 68.421 0.00 0.00 0.00 4.30
1950 2113 1.655114 GCCTCTCTCTCCCTCCCTCT 61.655 65.000 0.00 0.00 0.00 3.69
2040 2237 3.966665 TCTTTGTTTCCCCATTGCTTCTT 59.033 39.130 0.00 0.00 0.00 2.52
2069 2266 1.829849 TCCTCTCTGCATCTGGTTCAG 59.170 52.381 0.00 0.00 0.00 3.02
2086 2283 1.445238 AGTTCGCTCGAGCTGAAGC 60.445 57.895 30.91 25.63 39.32 3.86
2087 2284 1.734477 GTTCGCTCGAGCTGAAGCA 60.734 57.895 30.91 16.81 45.16 3.91
2131 2330 3.601435 GGTTCTCTAGTTTGCTTCCTCC 58.399 50.000 0.00 0.00 0.00 4.30
2160 2359 3.257127 ACTTTGGAGTTCTTCTCTCTCGG 59.743 47.826 0.00 0.00 42.40 4.63
2164 2363 3.005897 TGGAGTTCTTCTCTCTCGGTTTG 59.994 47.826 0.00 0.00 42.40 2.93
2165 2364 3.256136 GGAGTTCTTCTCTCTCGGTTTGA 59.744 47.826 0.00 0.00 42.40 2.69
2167 2366 3.892588 AGTTCTTCTCTCTCGGTTTGACT 59.107 43.478 0.00 0.00 0.00 3.41
2184 2383 3.765381 TGACTCTGCATTTGGGATGAAA 58.235 40.909 0.00 0.00 0.00 2.69
2258 2460 8.401490 AGATGCATTTTCTGAGGTTATATTCC 57.599 34.615 0.00 0.00 0.00 3.01
2568 2785 3.619233 GAGAGGTACGAATCTCTGCTC 57.381 52.381 11.92 0.00 40.12 4.26
2577 2794 2.793790 CGAATCTCTGCTCTCAATTCGG 59.206 50.000 7.67 0.00 42.88 4.30
2582 2799 0.371645 CTGCTCTCAATTCGGTTCGC 59.628 55.000 0.00 0.00 0.00 4.70
2586 2803 1.256376 CTCTCAATTCGGTTCGCATCG 59.744 52.381 0.00 0.00 0.00 3.84
2589 2806 1.801771 TCAATTCGGTTCGCATCGTTT 59.198 42.857 0.00 0.00 0.00 3.60
2590 2807 2.159761 TCAATTCGGTTCGCATCGTTTC 60.160 45.455 0.00 0.00 0.00 2.78
2591 2808 1.434555 ATTCGGTTCGCATCGTTTCA 58.565 45.000 0.00 0.00 0.00 2.69
2592 2809 1.434555 TTCGGTTCGCATCGTTTCAT 58.565 45.000 0.00 0.00 0.00 2.57
2593 2810 1.434555 TCGGTTCGCATCGTTTCATT 58.565 45.000 0.00 0.00 0.00 2.57
2594 2811 1.392168 TCGGTTCGCATCGTTTCATTC 59.608 47.619 0.00 0.00 0.00 2.67
2595 2812 1.797964 GGTTCGCATCGTTTCATTCG 58.202 50.000 0.00 0.00 0.00 3.34
2596 2813 1.529010 GGTTCGCATCGTTTCATTCGG 60.529 52.381 0.00 0.00 0.00 4.30
2597 2814 0.096281 TTCGCATCGTTTCATTCGGC 59.904 50.000 0.00 0.00 0.00 5.54
2598 2815 0.739462 TCGCATCGTTTCATTCGGCT 60.739 50.000 0.00 0.00 0.00 5.52
2599 2816 0.927537 CGCATCGTTTCATTCGGCTA 59.072 50.000 0.00 0.00 0.00 3.93
2600 2817 1.326245 CGCATCGTTTCATTCGGCTAA 59.674 47.619 0.00 0.00 0.00 3.09
2601 2818 2.597505 CGCATCGTTTCATTCGGCTAAG 60.598 50.000 0.00 0.00 0.00 2.18
2602 2819 2.351726 GCATCGTTTCATTCGGCTAAGT 59.648 45.455 0.00 0.00 0.00 2.24
2603 2820 3.554324 GCATCGTTTCATTCGGCTAAGTA 59.446 43.478 0.00 0.00 0.00 2.24
2604 2821 4.211374 GCATCGTTTCATTCGGCTAAGTAT 59.789 41.667 0.00 0.00 0.00 2.12
2605 2822 5.670097 CATCGTTTCATTCGGCTAAGTATG 58.330 41.667 0.00 0.00 0.00 2.39
2607 2824 5.172934 TCGTTTCATTCGGCTAAGTATGTT 58.827 37.500 0.00 0.00 0.00 2.71
2608 2825 5.290158 TCGTTTCATTCGGCTAAGTATGTTC 59.710 40.000 0.00 0.00 0.00 3.18
2609 2826 5.062934 CGTTTCATTCGGCTAAGTATGTTCA 59.937 40.000 0.00 0.00 0.00 3.18
2610 2827 6.238103 CGTTTCATTCGGCTAAGTATGTTCAT 60.238 38.462 0.00 0.00 0.00 2.57
2611 2828 6.603237 TTCATTCGGCTAAGTATGTTCATG 57.397 37.500 0.00 0.00 0.00 3.07
2615 2856 5.585820 TCGGCTAAGTATGTTCATGTGTA 57.414 39.130 0.00 0.00 0.00 2.90
2617 2858 5.983118 TCGGCTAAGTATGTTCATGTGTATG 59.017 40.000 0.00 0.00 35.57 2.39
2618 2859 5.983118 CGGCTAAGTATGTTCATGTGTATGA 59.017 40.000 0.00 0.00 41.44 2.15
2633 2874 9.246670 TCATGTGTATGAATGAAAGGAAATCTT 57.753 29.630 0.00 0.00 40.26 2.40
2634 2875 9.297586 CATGTGTATGAATGAAAGGAAATCTTG 57.702 33.333 0.00 0.00 36.36 3.02
2638 2879 3.193267 TGAATGAAAGGAAATCTTGCCCG 59.807 43.478 0.00 0.00 35.55 6.13
2640 2881 0.173481 GAAAGGAAATCTTGCCCGGC 59.827 55.000 1.04 1.04 35.55 6.13
2648 2889 1.917872 ATCTTGCCCGGCTTGTTTTA 58.082 45.000 11.61 0.00 0.00 1.52
2649 2890 1.693627 TCTTGCCCGGCTTGTTTTAA 58.306 45.000 11.61 0.00 0.00 1.52
2650 2891 2.243810 TCTTGCCCGGCTTGTTTTAAT 58.756 42.857 11.61 0.00 0.00 1.40
2651 2892 2.230266 TCTTGCCCGGCTTGTTTTAATC 59.770 45.455 11.61 0.00 0.00 1.75
2653 2894 2.243810 TGCCCGGCTTGTTTTAATCTT 58.756 42.857 11.61 0.00 0.00 2.40
2654 2895 3.422796 TGCCCGGCTTGTTTTAATCTTA 58.577 40.909 11.61 0.00 0.00 2.10
2743 2984 2.083774 GTTCTTGAATGCCACCGATGA 58.916 47.619 0.00 0.00 0.00 2.92
2760 3001 4.277258 CGATGATTTCTCTCATTTTGCCG 58.723 43.478 0.00 0.00 36.01 5.69
2807 3048 6.096282 TGTCCATGTTGATACTGTCTCGATTA 59.904 38.462 0.00 0.00 0.00 1.75
2842 3083 0.884514 TGGTCTGTCTCGCTCTTGAG 59.115 55.000 0.00 0.00 37.33 3.02
2885 3126 3.238441 CGAGTACTCTGAAACAGACAGC 58.762 50.000 20.34 0.00 35.39 4.40
2918 3159 4.693566 CCGGTAGCTAAAATGAAGTGTTCA 59.306 41.667 0.00 0.00 45.01 3.18
2919 3160 5.180492 CCGGTAGCTAAAATGAAGTGTTCAA 59.820 40.000 0.00 0.00 43.95 2.69
2964 3205 8.135382 ACTAACAGTTGTCCTAGTAATCATGT 57.865 34.615 0.00 0.00 0.00 3.21
2967 3208 5.178061 CAGTTGTCCTAGTAATCATGTGCA 58.822 41.667 0.00 0.00 0.00 4.57
2980 3221 2.097036 CATGTGCACTGTGGGATCATT 58.903 47.619 19.41 0.00 0.00 2.57
2987 3228 3.678806 GCACTGTGGGATCATTCGAGTAA 60.679 47.826 10.21 0.00 0.00 2.24
3143 3386 7.201705 GGTTAAGCCAAGCTAATTAAGTACCTG 60.202 40.741 0.00 0.00 38.25 4.00
3162 3405 5.238583 ACCTGTAGAGCACACAAAATACTC 58.761 41.667 0.00 0.00 32.33 2.59
3186 3429 5.163754 CCGTTCTTACTTGGTCAAATGATCC 60.164 44.000 0.00 0.00 0.00 3.36
3216 3462 2.666022 GCTAATGTTCGCGCCAATTTTT 59.334 40.909 0.00 0.00 0.00 1.94
3237 3483 2.699954 ACAAATCCGTGCTTCGATTCT 58.300 42.857 3.69 0.00 42.86 2.40
3279 3529 6.430616 TCTTACAATGTGATGATGCAAAGTGA 59.569 34.615 0.00 0.00 0.00 3.41
3349 3603 5.438117 CAGTAATGCATAGCAAGACAATCG 58.562 41.667 0.00 0.00 43.62 3.34
3425 3680 4.974368 TTGTTGAAAGTGAAACCACGAT 57.026 36.364 0.00 0.00 39.45 3.73
3451 3706 1.336440 TGTTGATTGGAGTTTGGCACG 59.664 47.619 0.00 0.00 0.00 5.34
3550 3805 4.724602 TCGCAGCTGCAGGACGAC 62.725 66.667 36.03 6.57 42.21 4.34
3601 3856 1.587054 CGAGAACTCCAGGAAGCGT 59.413 57.895 0.00 0.00 0.00 5.07
3697 3952 3.894947 GCCGAGCTCTCCTCCGTC 61.895 72.222 12.85 0.00 37.27 4.79
3922 4177 3.749064 GTCGACGAGCTCAGGGCA 61.749 66.667 15.40 0.00 44.79 5.36
4369 4627 1.067295 AGGTCATGTTCCTCAAGGCA 58.933 50.000 6.43 0.00 34.44 4.75
4537 4795 2.872557 CGGCAGTACGAGTCCGAA 59.127 61.111 14.19 0.00 44.23 4.30
4675 4933 3.058160 GCCATGGCGTTGCTCACT 61.058 61.111 23.48 0.00 0.00 3.41
4841 5099 1.601430 GGAAGAAATGAGGCTGATCGC 59.399 52.381 0.00 1.55 38.13 4.58
4886 5144 1.359475 GTGGCTCGATCGTAGGGAC 59.641 63.158 15.94 6.99 0.00 4.46
4902 5166 3.562182 AGGGACCGAGTTGTTCATTTTT 58.438 40.909 0.00 0.00 0.00 1.94
4937 5201 1.370051 GTTTTGCCGGTTCTCGTGC 60.370 57.895 1.90 0.00 37.11 5.34
5056 5363 1.270571 TGACTAGTTGCGCCAATGACA 60.271 47.619 4.18 0.00 0.00 3.58
5064 5371 1.805428 GCGCCAATGACACAAAGGGT 61.805 55.000 0.00 0.00 0.00 4.34
5144 5451 1.194781 AACACTCCCGCATCCTCTGT 61.195 55.000 0.00 0.00 0.00 3.41
5171 5478 1.944430 GCCGTCTTTTCTCACCGGATT 60.944 52.381 9.46 0.00 41.08 3.01
5218 5525 9.850628 TCAAGAGCAAATTTCAGAGAAAATATG 57.149 29.630 0.00 0.00 0.00 1.78
5254 5561 6.035758 GGCTTTAAGTTGTACTATTGAGACCG 59.964 42.308 0.00 0.00 0.00 4.79
5255 5562 6.810182 GCTTTAAGTTGTACTATTGAGACCGA 59.190 38.462 0.00 0.00 0.00 4.69
5395 5702 2.378038 TGAAAGCCACAAAGAAGCAGT 58.622 42.857 0.00 0.00 0.00 4.40
5417 5724 2.445316 CAGATCTCTCGTTGTAGTGCG 58.555 52.381 0.00 0.00 0.00 5.34
5438 5745 3.134081 CGGGTACATGTCCTTAATCCTGT 59.866 47.826 0.00 0.00 0.00 4.00
5465 5772 6.549364 TCCACAGTCCATAATTTTTCAACACT 59.451 34.615 0.00 0.00 0.00 3.55
5490 5797 4.730949 ATCTACGAAATCCAACCGAAGA 57.269 40.909 0.00 0.00 0.00 2.87
5522 5829 1.312371 AAACATGCGCCGTGGCTTAT 61.312 50.000 4.18 0.16 39.32 1.73
5564 5871 1.940752 GCATTTTTGCGCAGGTTGGAT 60.941 47.619 11.31 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.278142 CATTAGCCAAAGCGCGCC 60.278 61.111 30.33 12.43 46.67 6.53
21 22 1.653094 TTCCCATTAGCCAAAGCGCG 61.653 55.000 0.00 0.00 46.67 6.86
38 39 1.743394 CGCACCCACCTAATTTCCTTC 59.257 52.381 0.00 0.00 0.00 3.46
44 45 6.206048 GCTATTAAATACGCACCCACCTAATT 59.794 38.462 0.00 0.00 0.00 1.40
53 54 3.564225 AGCTTGGCTATTAAATACGCACC 59.436 43.478 0.00 0.00 36.99 5.01
55 56 5.607477 AGTAGCTTGGCTATTAAATACGCA 58.393 37.500 0.00 0.00 43.30 5.24
56 57 7.384387 AGTTAGTAGCTTGGCTATTAAATACGC 59.616 37.037 13.34 4.63 42.10 4.42
68 69 3.268023 ACATCCAGTTAGTAGCTTGGC 57.732 47.619 0.00 0.00 0.00 4.52
106 112 1.595093 GGTGGAGAAATGGTTGGCCG 61.595 60.000 0.00 0.00 37.67 6.13
108 114 1.560505 ATGGTGGAGAAATGGTTGGC 58.439 50.000 0.00 0.00 0.00 4.52
127 133 1.231221 GCACATGAACCGTACCACAA 58.769 50.000 0.00 0.00 0.00 3.33
128 134 0.106894 TGCACATGAACCGTACCACA 59.893 50.000 0.00 0.00 0.00 4.17
129 135 0.515564 GTGCACATGAACCGTACCAC 59.484 55.000 13.17 0.00 0.00 4.16
130 136 0.604243 GGTGCACATGAACCGTACCA 60.604 55.000 20.43 0.00 33.24 3.25
131 137 2.168054 GGTGCACATGAACCGTACC 58.832 57.895 20.43 0.14 33.24 3.34
193 211 1.192534 GTTTTGCTCACCGTCTCTTCG 59.807 52.381 0.00 0.00 0.00 3.79
201 219 1.851658 CCCTTTTGTTTTGCTCACCG 58.148 50.000 0.00 0.00 0.00 4.94
202 235 1.134551 TGCCCTTTTGTTTTGCTCACC 60.135 47.619 0.00 0.00 0.00 4.02
229 262 1.297968 ATCCACCACCATCACCATGA 58.702 50.000 0.00 0.00 30.57 3.07
280 334 2.368875 ACTACAACCACCAGACTTGAGG 59.631 50.000 0.00 0.00 0.00 3.86
321 375 2.378038 GCATGGTCCCTTGCAAGATAA 58.622 47.619 28.05 9.51 43.68 1.75
353 407 0.753262 ATGATCACTGGCCGTCTACC 59.247 55.000 0.00 0.00 0.00 3.18
364 418 4.592192 CGGGCGGCGATGATCACT 62.592 66.667 12.98 0.00 0.00 3.41
460 520 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
461 521 3.071892 ACATACAAAAGTGAACGGAGGGA 59.928 43.478 0.00 0.00 0.00 4.20
462 522 3.408634 ACATACAAAAGTGAACGGAGGG 58.591 45.455 0.00 0.00 0.00 4.30
463 523 3.122948 CGACATACAAAAGTGAACGGAGG 59.877 47.826 0.00 0.00 0.00 4.30
464 524 3.739300 ACGACATACAAAAGTGAACGGAG 59.261 43.478 0.00 0.00 0.00 4.63
465 525 3.719924 ACGACATACAAAAGTGAACGGA 58.280 40.909 0.00 0.00 0.00 4.69
466 526 4.461992 AACGACATACAAAAGTGAACGG 57.538 40.909 0.00 0.00 0.00 4.44
467 527 5.494618 TGAAACGACATACAAAAGTGAACG 58.505 37.500 0.00 0.00 0.00 3.95
468 528 6.627671 GTCTGAAACGACATACAAAAGTGAAC 59.372 38.462 0.00 0.00 34.11 3.18
469 529 6.314152 TGTCTGAAACGACATACAAAAGTGAA 59.686 34.615 0.00 0.00 38.89 3.18
470 530 5.813157 TGTCTGAAACGACATACAAAAGTGA 59.187 36.000 0.00 0.00 38.89 3.41
471 531 6.043327 TGTCTGAAACGACATACAAAAGTG 57.957 37.500 0.00 0.00 38.89 3.16
472 532 6.315393 AGTTGTCTGAAACGACATACAAAAGT 59.685 34.615 11.53 0.00 43.77 2.66
473 533 6.715464 AGTTGTCTGAAACGACATACAAAAG 58.285 36.000 11.53 0.00 43.77 2.27
474 534 6.671614 AGTTGTCTGAAACGACATACAAAA 57.328 33.333 11.53 0.00 43.77 2.44
475 535 6.671614 AAGTTGTCTGAAACGACATACAAA 57.328 33.333 11.53 0.44 43.77 2.83
476 536 7.773864 TTAAGTTGTCTGAAACGACATACAA 57.226 32.000 0.00 0.00 43.77 2.41
477 537 7.773864 TTTAAGTTGTCTGAAACGACATACA 57.226 32.000 0.00 0.00 43.77 2.29
480 540 9.825972 CATATTTTAAGTTGTCTGAAACGACAT 57.174 29.630 0.00 0.00 43.77 3.06
481 541 8.832521 ACATATTTTAAGTTGTCTGAAACGACA 58.167 29.630 0.00 0.00 43.77 4.35
482 542 9.659830 AACATATTTTAAGTTGTCTGAAACGAC 57.340 29.630 0.00 0.00 41.93 4.34
483 543 9.658475 CAACATATTTTAAGTTGTCTGAAACGA 57.342 29.630 0.00 0.00 38.20 3.85
498 558 9.539825 AGACAATGTGCAAAACAACATATTTTA 57.460 25.926 0.00 0.00 43.61 1.52
499 559 8.336806 CAGACAATGTGCAAAACAACATATTTT 58.663 29.630 0.00 0.00 43.61 1.82
500 560 7.710044 TCAGACAATGTGCAAAACAACATATTT 59.290 29.630 0.00 0.00 43.61 1.40
501 561 7.208777 TCAGACAATGTGCAAAACAACATATT 58.791 30.769 0.00 0.00 43.61 1.28
502 562 6.747125 TCAGACAATGTGCAAAACAACATAT 58.253 32.000 0.00 0.00 43.61 1.78
503 563 6.141560 TCAGACAATGTGCAAAACAACATA 57.858 33.333 0.00 0.00 43.61 2.29
504 564 5.008619 TCAGACAATGTGCAAAACAACAT 57.991 34.783 0.00 0.00 43.61 2.71
505 565 4.446994 TCAGACAATGTGCAAAACAACA 57.553 36.364 0.00 0.00 43.61 3.33
506 566 5.776519 TTTCAGACAATGTGCAAAACAAC 57.223 34.783 0.00 0.00 43.61 3.32
507 567 8.143193 AGATATTTCAGACAATGTGCAAAACAA 58.857 29.630 0.00 0.00 43.61 2.83
508 568 7.660112 AGATATTTCAGACAATGTGCAAAACA 58.340 30.769 0.00 0.00 44.79 2.83
509 569 8.524870 AAGATATTTCAGACAATGTGCAAAAC 57.475 30.769 0.00 0.00 0.00 2.43
510 570 8.358895 TGAAGATATTTCAGACAATGTGCAAAA 58.641 29.630 0.00 0.00 0.00 2.44
511 571 7.884257 TGAAGATATTTCAGACAATGTGCAAA 58.116 30.769 0.00 0.00 0.00 3.68
512 572 7.451501 TGAAGATATTTCAGACAATGTGCAA 57.548 32.000 0.00 0.00 0.00 4.08
513 573 7.362315 CCTTGAAGATATTTCAGACAATGTGCA 60.362 37.037 0.00 0.00 0.00 4.57
514 574 6.971184 CCTTGAAGATATTTCAGACAATGTGC 59.029 38.462 0.00 0.00 0.00 4.57
515 575 8.048534 ACCTTGAAGATATTTCAGACAATGTG 57.951 34.615 0.00 0.00 0.00 3.21
516 576 8.105829 AGACCTTGAAGATATTTCAGACAATGT 58.894 33.333 0.00 0.00 0.00 2.71
517 577 8.503458 AGACCTTGAAGATATTTCAGACAATG 57.497 34.615 0.00 0.00 0.00 2.82
531 591 8.726988 CCGTTCATTTTTATAAGACCTTGAAGA 58.273 33.333 0.00 0.00 0.00 2.87
532 592 8.726988 TCCGTTCATTTTTATAAGACCTTGAAG 58.273 33.333 0.00 0.00 0.00 3.02
533 593 8.624367 TCCGTTCATTTTTATAAGACCTTGAA 57.376 30.769 0.00 0.00 0.00 2.69
534 594 8.098286 TCTCCGTTCATTTTTATAAGACCTTGA 58.902 33.333 0.00 0.00 0.00 3.02
535 595 8.263940 TCTCCGTTCATTTTTATAAGACCTTG 57.736 34.615 0.00 0.00 0.00 3.61
536 596 8.857694 TTCTCCGTTCATTTTTATAAGACCTT 57.142 30.769 0.00 0.00 0.00 3.50
537 597 8.857694 TTTCTCCGTTCATTTTTATAAGACCT 57.142 30.769 0.00 0.00 0.00 3.85
548 608 9.406828 GCTTTTTAAGTATTTCTCCGTTCATTT 57.593 29.630 0.00 0.00 0.00 2.32
549 609 8.027189 GGCTTTTTAAGTATTTCTCCGTTCATT 58.973 33.333 0.00 0.00 0.00 2.57
550 610 7.175990 TGGCTTTTTAAGTATTTCTCCGTTCAT 59.824 33.333 0.00 0.00 0.00 2.57
551 611 6.487331 TGGCTTTTTAAGTATTTCTCCGTTCA 59.513 34.615 0.00 0.00 0.00 3.18
552 612 6.800408 GTGGCTTTTTAAGTATTTCTCCGTTC 59.200 38.462 0.00 0.00 0.00 3.95
553 613 6.567132 CGTGGCTTTTTAAGTATTTCTCCGTT 60.567 38.462 0.00 0.00 0.00 4.44
554 614 5.106830 CGTGGCTTTTTAAGTATTTCTCCGT 60.107 40.000 0.00 0.00 0.00 4.69
555 615 5.321516 CGTGGCTTTTTAAGTATTTCTCCG 58.678 41.667 0.00 0.00 0.00 4.63
556 616 5.392703 CCCGTGGCTTTTTAAGTATTTCTCC 60.393 44.000 0.00 0.00 0.00 3.71
557 617 5.392703 CCCCGTGGCTTTTTAAGTATTTCTC 60.393 44.000 0.00 0.00 0.00 2.87
558 618 4.461431 CCCCGTGGCTTTTTAAGTATTTCT 59.539 41.667 0.00 0.00 0.00 2.52
559 619 4.740268 CCCCGTGGCTTTTTAAGTATTTC 58.260 43.478 0.00 0.00 0.00 2.17
560 620 4.794278 CCCCGTGGCTTTTTAAGTATTT 57.206 40.909 0.00 0.00 0.00 1.40
619 679 1.549170 CCGTCTAACCTGGCACTAACT 59.451 52.381 0.00 0.00 0.00 2.24
668 728 2.994387 TAGCGCATCATTCCCGGCTG 62.994 60.000 11.47 0.00 32.29 4.85
695 755 2.242882 AATGGAGGGAAGCAAGCATT 57.757 45.000 0.00 0.00 0.00 3.56
750 821 2.567615 AGGGCTCTTTGTAGTACCACTG 59.432 50.000 0.00 0.00 0.00 3.66
770 841 1.720694 GCGACGGAGGGAGAGAAGAG 61.721 65.000 0.00 0.00 0.00 2.85
774 845 1.991339 TATGGCGACGGAGGGAGAGA 61.991 60.000 0.00 0.00 0.00 3.10
775 846 1.519751 CTATGGCGACGGAGGGAGAG 61.520 65.000 0.00 0.00 0.00 3.20
776 847 1.528542 CTATGGCGACGGAGGGAGA 60.529 63.158 0.00 0.00 0.00 3.71
777 848 3.043419 CTATGGCGACGGAGGGAG 58.957 66.667 0.00 0.00 0.00 4.30
778 849 3.224324 GCTATGGCGACGGAGGGA 61.224 66.667 0.00 0.00 0.00 4.20
820 891 1.616628 GGAGAGGCCAAGGGAAGGA 60.617 63.158 5.01 0.00 36.34 3.36
902 990 1.808945 CACCTACAGGAAAGCTGCAAG 59.191 52.381 1.02 0.00 38.94 4.01
932 1027 0.037326 GCACTGCTGCACTACTGGTA 60.037 55.000 0.00 0.00 43.62 3.25
952 1047 4.262549 CCAAAATTTGATTGAGAGCCACCA 60.263 41.667 7.37 0.00 0.00 4.17
1030 1129 1.635663 GGTTGGATGGCACGAACGAG 61.636 60.000 0.14 0.00 31.15 4.18
1046 1153 1.355043 AGAGTAGAGGACAGACGGGTT 59.645 52.381 0.00 0.00 0.00 4.11
1047 1154 0.993470 AGAGTAGAGGACAGACGGGT 59.007 55.000 0.00 0.00 0.00 5.28
1094 1209 8.419076 AACGAACAATCAAACTGCTAAAAATT 57.581 26.923 0.00 0.00 0.00 1.82
1141 1257 6.292919 GCATGGACGGAAGAATCAAATACTAC 60.293 42.308 0.00 0.00 0.00 2.73
1142 1258 5.758296 GCATGGACGGAAGAATCAAATACTA 59.242 40.000 0.00 0.00 0.00 1.82
1143 1259 4.576463 GCATGGACGGAAGAATCAAATACT 59.424 41.667 0.00 0.00 0.00 2.12
1144 1260 4.576463 AGCATGGACGGAAGAATCAAATAC 59.424 41.667 0.00 0.00 0.00 1.89
1157 1273 4.173256 GGAAATAAACAAAGCATGGACGG 58.827 43.478 0.00 0.00 0.00 4.79
1159 1275 5.063817 GCATGGAAATAAACAAAGCATGGAC 59.936 40.000 0.00 0.00 0.00 4.02
1195 1337 9.868160 TGGAAGAGTAGAATCTATCTAACATCA 57.132 33.333 0.00 0.00 42.24 3.07
1266 1408 9.462606 CATCAAGGGAAAGGTAATAGTAAAACT 57.537 33.333 0.00 0.00 0.00 2.66
1276 1418 3.534357 TTGGCATCAAGGGAAAGGTAA 57.466 42.857 0.00 0.00 0.00 2.85
1283 1425 1.252904 GCAGCTTTGGCATCAAGGGA 61.253 55.000 1.43 0.00 41.70 4.20
1291 1433 0.321919 ATCGAAGAGCAGCTTTGGCA 60.322 50.000 0.00 0.00 43.63 4.92
1302 1444 2.606795 GGATGAAGGCGAGATCGAAGAG 60.607 54.545 6.39 0.00 43.63 2.85
1306 1448 1.654774 CGGATGAAGGCGAGATCGA 59.345 57.895 6.39 0.00 43.02 3.59
1308 1450 1.666234 GCCGGATGAAGGCGAGATC 60.666 63.158 5.05 0.00 45.58 2.75
1326 1468 4.336889 TTGTGAGGGAACAGAACAGTAG 57.663 45.455 0.00 0.00 0.00 2.57
1337 1479 3.360867 TGCTCAAAACTTTGTGAGGGAA 58.639 40.909 10.54 0.00 41.36 3.97
1370 1512 1.279271 CCATGGAGGGAAGTTCGAACT 59.721 52.381 24.93 24.93 42.04 3.01
1379 1521 0.624206 TGATGGAGCCATGGAGGGAA 60.624 55.000 18.40 0.00 36.70 3.97
1391 1533 2.612672 CAGCAGTGCTACATTGATGGAG 59.387 50.000 19.26 0.00 41.81 3.86
1393 1535 2.635714 TCAGCAGTGCTACATTGATGG 58.364 47.619 19.26 1.78 37.90 3.51
1394 1536 5.617087 GCATATCAGCAGTGCTACATTGATG 60.617 44.000 19.26 15.32 38.50 3.07
1396 1538 3.811497 GCATATCAGCAGTGCTACATTGA 59.189 43.478 19.26 12.01 36.40 2.57
1398 1540 4.082665 AGCATATCAGCAGTGCTACATT 57.917 40.909 19.26 5.45 46.54 2.71
1405 1547 3.455990 ACAGAGAGCATATCAGCAGTG 57.544 47.619 0.00 0.00 36.85 3.66
1407 1549 4.052608 CTGAACAGAGAGCATATCAGCAG 58.947 47.826 0.00 0.00 36.85 4.24
1408 1550 3.181468 CCTGAACAGAGAGCATATCAGCA 60.181 47.826 3.19 0.00 34.42 4.41
1409 1551 3.391965 CCTGAACAGAGAGCATATCAGC 58.608 50.000 3.19 0.00 34.42 4.26
1410 1552 3.244146 CCCCTGAACAGAGAGCATATCAG 60.244 52.174 3.19 0.00 35.28 2.90
1447 1600 1.242076 CAGGCCTGAAACTGTTGAGG 58.758 55.000 29.88 12.44 40.86 3.86
1516 1669 9.676195 CGCGATTGATCATCTCTATTAAGATAT 57.324 33.333 0.00 0.00 34.21 1.63
1517 1670 8.678199 ACGCGATTGATCATCTCTATTAAGATA 58.322 33.333 15.93 0.00 34.21 1.98
1518 1671 7.542890 ACGCGATTGATCATCTCTATTAAGAT 58.457 34.615 15.93 0.00 36.41 2.40
1520 1673 7.573916 AACGCGATTGATCATCTCTATTAAG 57.426 36.000 15.93 0.00 0.00 1.85
1521 1674 9.639601 ATTAACGCGATTGATCATCTCTATTAA 57.360 29.630 15.93 1.15 0.00 1.40
1522 1675 9.639601 AATTAACGCGATTGATCATCTCTATTA 57.360 29.630 15.93 0.00 0.00 0.98
1523 1676 8.539770 AATTAACGCGATTGATCATCTCTATT 57.460 30.769 15.93 0.00 0.00 1.73
1524 1677 7.276658 GGAATTAACGCGATTGATCATCTCTAT 59.723 37.037 15.93 0.00 0.00 1.98
1527 1680 5.612865 GGAATTAACGCGATTGATCATCTC 58.387 41.667 15.93 0.00 0.00 2.75
1529 1682 4.386230 CGGAATTAACGCGATTGATCATC 58.614 43.478 15.93 1.74 0.00 2.92
1543 1696 0.253610 ATGTCACGGGGCGGAATTAA 59.746 50.000 0.00 0.00 0.00 1.40
1549 1702 1.376166 TTAACATGTCACGGGGCGG 60.376 57.895 0.00 0.00 0.00 6.13
1572 1725 3.803840 TATAGCCGCCCAGACGACTGA 62.804 57.143 16.58 0.00 46.03 3.41
1573 1726 1.452953 TATAGCCGCCCAGACGACTG 61.453 60.000 7.98 7.98 43.12 3.51
1574 1727 0.754217 TTATAGCCGCCCAGACGACT 60.754 55.000 0.00 0.00 34.06 4.18
1575 1728 0.103572 TTTATAGCCGCCCAGACGAC 59.896 55.000 0.00 0.00 34.06 4.34
1580 1733 0.655733 CGTTGTTTATAGCCGCCCAG 59.344 55.000 0.00 0.00 0.00 4.45
1589 1742 8.556213 AACTAAGGATGAAAGCGTTGTTTATA 57.444 30.769 0.00 0.00 30.68 0.98
1596 1749 4.287766 AGGAACTAAGGATGAAAGCGTT 57.712 40.909 0.00 0.00 36.02 4.84
1631 1784 1.153168 GCTGGCTCCGGCAAGATAA 60.153 57.895 14.51 0.00 46.81 1.75
1733 1891 1.153309 GGGGCCATCTGCATTTTGC 60.153 57.895 4.39 0.00 45.29 3.68
1734 1892 0.834612 ATGGGGCCATCTGCATTTTG 59.165 50.000 4.39 0.00 43.89 2.44
1768 1926 2.048222 CGCCGAGCTCAAGAACCA 60.048 61.111 15.40 0.00 0.00 3.67
1884 2047 8.842358 AGGCGCATTAGCTTAATAACTTAATA 57.158 30.769 10.83 0.00 39.10 0.98
1933 2096 1.421646 GAGAGAGGGAGGGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
1934 2097 1.010793 AGAGAGAGGGAGGGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
1935 2098 1.421646 GAGAGAGAGGGAGGGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
1936 2099 1.518367 GAGAGAGAGGGAGGGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
1937 2100 0.108585 CGAGAGAGAGGGAGGGAGAG 59.891 65.000 0.00 0.00 0.00 3.20
1938 2101 1.990160 GCGAGAGAGAGGGAGGGAGA 61.990 65.000 0.00 0.00 0.00 3.71
1939 2102 1.528309 GCGAGAGAGAGGGAGGGAG 60.528 68.421 0.00 0.00 0.00 4.30
1940 2103 1.990160 GAGCGAGAGAGAGGGAGGGA 61.990 65.000 0.00 0.00 0.00 4.20
1941 2104 1.528309 GAGCGAGAGAGAGGGAGGG 60.528 68.421 0.00 0.00 0.00 4.30
1942 2105 1.891919 CGAGCGAGAGAGAGGGAGG 60.892 68.421 0.00 0.00 0.00 4.30
1943 2106 2.542907 GCGAGCGAGAGAGAGGGAG 61.543 68.421 0.00 0.00 0.00 4.30
1944 2107 2.515057 GCGAGCGAGAGAGAGGGA 60.515 66.667 0.00 0.00 0.00 4.20
1945 2108 3.591835 GGCGAGCGAGAGAGAGGG 61.592 72.222 0.00 0.00 0.00 4.30
1946 2109 3.591835 GGGCGAGCGAGAGAGAGG 61.592 72.222 0.00 0.00 0.00 3.69
1947 2110 3.947841 CGGGCGAGCGAGAGAGAG 61.948 72.222 0.00 0.00 0.00 3.20
2040 2237 1.190178 TGCAGAGAGGAGAAGCAGCA 61.190 55.000 0.00 0.00 0.00 4.41
2158 2357 1.068333 CCCAAATGCAGAGTCAAACCG 60.068 52.381 0.00 0.00 0.00 4.44
2160 2359 3.507233 TCATCCCAAATGCAGAGTCAAAC 59.493 43.478 0.00 0.00 0.00 2.93
2164 2363 3.129988 CCTTTCATCCCAAATGCAGAGTC 59.870 47.826 0.00 0.00 0.00 3.36
2165 2364 3.094572 CCTTTCATCCCAAATGCAGAGT 58.905 45.455 0.00 0.00 0.00 3.24
2167 2366 2.459644 CCCTTTCATCCCAAATGCAGA 58.540 47.619 0.00 0.00 0.00 4.26
2184 2383 1.693640 CAGGATTTCAGTGCCCCCT 59.306 57.895 0.00 0.00 0.00 4.79
2258 2460 1.446792 CCTCACGGCTGTACTGCTG 60.447 63.158 26.63 26.63 44.34 4.41
2287 2489 3.428862 GGAAGCTAGCTGAGACTGAAGTC 60.429 52.174 20.16 7.60 45.08 3.01
2295 2497 1.411787 GGTAGGGGAAGCTAGCTGAGA 60.412 57.143 20.16 0.00 0.00 3.27
2330 2535 4.682787 GGTCAGAAACCTCAACCAAAAAG 58.317 43.478 0.00 0.00 45.45 2.27
2352 2557 3.303132 GCCAAGAACACAAAGTACAGTCG 60.303 47.826 0.00 0.00 0.00 4.18
2543 2749 4.142359 GCAGAGATTCGTACCTCTCTTTCA 60.142 45.833 12.32 0.00 44.51 2.69
2568 2785 0.999406 ACGATGCGAACCGAATTGAG 59.001 50.000 1.81 0.00 31.15 3.02
2577 2794 1.797964 CCGAATGAAACGATGCGAAC 58.202 50.000 0.00 0.00 0.00 3.95
2582 2799 5.234329 ACATACTTAGCCGAATGAAACGATG 59.766 40.000 0.00 0.00 0.00 3.84
2586 2803 6.417191 TGAACATACTTAGCCGAATGAAAC 57.583 37.500 0.00 0.00 0.00 2.78
2589 2806 5.523552 CACATGAACATACTTAGCCGAATGA 59.476 40.000 0.00 0.00 0.00 2.57
2590 2807 5.294306 ACACATGAACATACTTAGCCGAATG 59.706 40.000 0.00 0.00 0.00 2.67
2591 2808 5.428253 ACACATGAACATACTTAGCCGAAT 58.572 37.500 0.00 0.00 0.00 3.34
2592 2809 4.827692 ACACATGAACATACTTAGCCGAA 58.172 39.130 0.00 0.00 0.00 4.30
2593 2810 4.465632 ACACATGAACATACTTAGCCGA 57.534 40.909 0.00 0.00 0.00 5.54
2594 2811 5.983118 TCATACACATGAACATACTTAGCCG 59.017 40.000 0.00 0.00 38.25 5.52
2595 2812 7.786178 TTCATACACATGAACATACTTAGCC 57.214 36.000 0.00 0.00 44.44 3.93
2607 2824 8.812513 AGATTTCCTTTCATTCATACACATGA 57.187 30.769 0.00 0.00 39.47 3.07
2608 2825 9.297586 CAAGATTTCCTTTCATTCATACACATG 57.702 33.333 0.00 0.00 31.42 3.21
2609 2826 7.977853 GCAAGATTTCCTTTCATTCATACACAT 59.022 33.333 0.00 0.00 31.42 3.21
2610 2827 7.315142 GCAAGATTTCCTTTCATTCATACACA 58.685 34.615 0.00 0.00 31.42 3.72
2611 2828 6.753744 GGCAAGATTTCCTTTCATTCATACAC 59.246 38.462 0.00 0.00 31.42 2.90
2615 2856 4.142093 CGGGCAAGATTTCCTTTCATTCAT 60.142 41.667 0.00 0.00 31.42 2.57
2617 2858 3.429410 CCGGGCAAGATTTCCTTTCATTC 60.429 47.826 0.00 0.00 31.42 2.67
2618 2859 2.497273 CCGGGCAAGATTTCCTTTCATT 59.503 45.455 0.00 0.00 31.42 2.57
2619 2860 2.102578 CCGGGCAAGATTTCCTTTCAT 58.897 47.619 0.00 0.00 31.42 2.57
2622 2863 0.251787 AGCCGGGCAAGATTTCCTTT 60.252 50.000 23.09 0.00 31.42 3.11
2624 2865 0.967380 CAAGCCGGGCAAGATTTCCT 60.967 55.000 23.09 0.00 0.00 3.36
2626 2867 0.603065 AACAAGCCGGGCAAGATTTC 59.397 50.000 23.09 0.00 0.00 2.17
2633 2874 1.917872 AGATTAAAACAAGCCGGGCA 58.082 45.000 23.09 0.00 0.00 5.36
2634 2875 4.157105 TCTTAAGATTAAAACAAGCCGGGC 59.843 41.667 12.11 12.11 0.00 6.13
2653 2894 8.787852 GCCTCTCAAAAATCTCTTTCTTTCTTA 58.212 33.333 0.00 0.00 0.00 2.10
2654 2895 7.505248 AGCCTCTCAAAAATCTCTTTCTTTCTT 59.495 33.333 0.00 0.00 0.00 2.52
2678 2919 3.363084 GCTTGTAACGAACTCTCAACAGC 60.363 47.826 0.00 0.00 0.00 4.40
2743 2984 3.085952 TCCCGGCAAAATGAGAGAAAT 57.914 42.857 0.00 0.00 0.00 2.17
2760 3001 4.520492 CAGATACAGGTATTGCCAAATCCC 59.480 45.833 0.00 0.00 40.61 3.85
2807 3048 2.840651 AGACCAATAGCCAACTACAGCT 59.159 45.455 0.00 0.00 43.20 4.24
2842 3083 4.434520 GGAGTAATTGACAGTCTGCTACC 58.565 47.826 1.31 0.00 0.00 3.18
2943 3184 5.178797 GCACATGATTACTAGGACAACTGT 58.821 41.667 0.00 0.00 0.00 3.55
2964 3205 0.612744 TCGAATGATCCCACAGTGCA 59.387 50.000 0.00 0.00 0.00 4.57
2967 3208 3.769844 ACTTACTCGAATGATCCCACAGT 59.230 43.478 0.00 0.00 0.00 3.55
2980 3221 0.824109 CCCATCCTGCACTTACTCGA 59.176 55.000 0.00 0.00 0.00 4.04
2987 3228 2.610438 AAATCAACCCATCCTGCACT 57.390 45.000 0.00 0.00 0.00 4.40
3143 3386 4.243270 ACGGAGTATTTTGTGTGCTCTAC 58.757 43.478 0.00 0.00 41.94 2.59
3162 3405 5.163754 GGATCATTTGACCAAGTAAGAACGG 60.164 44.000 0.00 0.00 0.00 4.44
3216 3462 3.857052 AGAATCGAAGCACGGATTTGTA 58.143 40.909 0.00 0.00 42.82 2.41
3237 3483 5.676552 TGTAAGACTTCTGTTGGCAGTAAA 58.323 37.500 0.00 0.00 43.05 2.01
3279 3529 7.214467 TCGGCTCAAAAGAAAATACTTTCAT 57.786 32.000 0.00 0.00 42.99 2.57
3349 3603 4.706962 AGTTCTGGCATTGGGATTTTAGAC 59.293 41.667 0.00 0.00 0.00 2.59
3358 3612 1.273327 GTGGAAAGTTCTGGCATTGGG 59.727 52.381 0.00 0.00 0.00 4.12
3364 3619 2.561478 TAGTGGTGGAAAGTTCTGGC 57.439 50.000 0.00 0.00 0.00 4.85
3425 3680 4.441356 GCCAAACTCCAATCAACAAACTCA 60.441 41.667 0.00 0.00 0.00 3.41
3451 3706 4.503741 TCAGCAAAAAGATTAGTGGTGC 57.496 40.909 0.00 0.00 38.91 5.01
3697 3952 1.880340 GAAGATGCGGGTCTGCTCG 60.880 63.158 3.31 0.00 42.50 5.03
3922 4177 4.357947 TCGCTCGCCGACAGCTTT 62.358 61.111 0.00 0.00 41.89 3.51
4157 4415 3.782244 GTCCGAGCAGTTGCAGCG 61.782 66.667 6.90 9.27 45.16 5.18
4202 4460 3.319198 GGCCTCCACGTCCTCCAA 61.319 66.667 0.00 0.00 0.00 3.53
4267 4525 1.847328 TCTGGTCCATGAGCTCGTAA 58.153 50.000 8.44 0.00 0.00 3.18
4813 5071 2.098117 GCCTCATTTCTTCCACATTCCG 59.902 50.000 0.00 0.00 0.00 4.30
4841 5099 2.977914 ACTTGACATCAGTTGATCGGG 58.022 47.619 0.00 0.00 31.21 5.14
4902 5166 5.233263 GGCAAAACAATTTTACAAGCGAGAA 59.767 36.000 0.00 0.00 0.00 2.87
4937 5201 9.436957 AGTACAATCACTCCTATGTTTTTACAG 57.563 33.333 0.00 0.00 0.00 2.74
5056 5363 1.492993 GGCTCCCTCTCACCCTTTGT 61.493 60.000 0.00 0.00 0.00 2.83
5064 5371 2.237143 CACAATACTTGGCTCCCTCTCA 59.763 50.000 0.00 0.00 34.12 3.27
5144 5451 2.616842 GTGAGAAAAGACGGCTTCCAAA 59.383 45.455 2.63 0.00 31.82 3.28
5254 5561 8.739972 ACAAACTAAATGAAGATATGGTGGTTC 58.260 33.333 0.00 0.00 0.00 3.62
5255 5562 8.650143 ACAAACTAAATGAAGATATGGTGGTT 57.350 30.769 0.00 0.00 0.00 3.67
5395 5702 2.423892 GCACTACAACGAGAGATCTGGA 59.576 50.000 0.00 0.00 0.00 3.86
5417 5724 4.772886 ACAGGATTAAGGACATGTACCC 57.227 45.455 3.84 0.00 29.45 3.69
5438 5745 8.519526 GTGTTGAAAAATTATGGACTGTGGATA 58.480 33.333 0.00 0.00 0.00 2.59
5465 5772 7.098477 TCTTCGGTTGGATTTCGTAGATTTAA 58.902 34.615 0.00 0.00 35.04 1.52
5472 5779 5.701750 TGATTTTCTTCGGTTGGATTTCGTA 59.298 36.000 0.00 0.00 0.00 3.43
5490 5797 3.255725 CGCATGTTTCTGCCATGATTTT 58.744 40.909 4.66 0.00 41.78 1.82
5522 5829 2.588464 AGAAGTCCTTCTCGGAGACA 57.412 50.000 7.33 0.00 46.13 3.41
5549 5856 1.268352 GTTGTATCCAACCTGCGCAAA 59.732 47.619 13.05 0.00 44.25 3.68
5564 5871 2.076100 CTTGCAGCGAGGATTGTTGTA 58.924 47.619 0.94 0.00 32.65 2.41
5729 6036 1.450134 CACTATGCCTGCGCCAAGA 60.450 57.895 4.18 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.