Multiple sequence alignment - TraesCS3B01G384900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G384900 chr3B 100.000 2940 0 0 1 2940 605021365 605018426 0.000000e+00 5430.0
1 TraesCS3B01G384900 chr3B 91.071 112 7 2 367 477 254192995 254192886 6.560000e-32 148.0
2 TraesCS3B01G384900 chr3B 91.071 112 7 2 367 477 755478675 755478784 6.560000e-32 148.0
3 TraesCS3B01G384900 chr3D 87.114 745 46 24 959 1699 457409985 457409287 0.000000e+00 798.0
4 TraesCS3B01G384900 chr3D 92.150 293 10 5 1713 1997 457409192 457408905 4.560000e-108 401.0
5 TraesCS3B01G384900 chr3D 90.397 302 12 12 2648 2937 457407722 457407426 5.950000e-102 381.0
6 TraesCS3B01G384900 chr3D 93.488 215 9 2 1991 2205 457408883 457408674 6.120000e-82 315.0
7 TraesCS3B01G384900 chr3D 84.706 170 14 7 2351 2516 457408558 457408397 3.030000e-35 159.0
8 TraesCS3B01G384900 chr3D 87.500 136 11 2 2 137 457410772 457410643 5.070000e-33 152.0
9 TraesCS3B01G384900 chr3D 89.381 113 8 3 367 477 475549841 475549951 3.950000e-29 139.0
10 TraesCS3B01G384900 chr3A 86.584 723 53 27 986 1687 600323010 600322311 0.000000e+00 758.0
11 TraesCS3B01G384900 chr3A 79.093 507 21 28 2380 2874 600321443 600321010 1.340000e-68 270.0
12 TraesCS3B01G384900 chr3A 83.121 314 24 19 1713 2009 600322216 600321915 2.910000e-65 259.0
13 TraesCS3B01G384900 chr3A 86.154 130 8 8 1 129 600324166 600324046 6.610000e-27 132.0
14 TraesCS3B01G384900 chr3A 100.000 30 0 0 258 287 485525649 485525678 4.090000e-04 56.5
15 TraesCS3B01G384900 chr6B 91.071 112 7 2 367 477 9429365 9429256 6.560000e-32 148.0
16 TraesCS3B01G384900 chr6B 91.071 112 7 2 367 477 628238733 628238624 6.560000e-32 148.0
17 TraesCS3B01G384900 chr4A 91.071 112 7 2 367 477 541367034 541366925 6.560000e-32 148.0
18 TraesCS3B01G384900 chr7D 90.179 112 8 2 367 477 22654032 22654141 3.050000e-30 143.0
19 TraesCS3B01G384900 chr7D 90.179 112 8 2 367 477 555059321 555059212 3.050000e-30 143.0
20 TraesCS3B01G384900 chr7D 100.000 30 0 0 259 288 206432561 206432532 4.090000e-04 56.5
21 TraesCS3B01G384900 chr6D 89.286 112 9 2 367 477 472495903 472496012 1.420000e-28 137.0
22 TraesCS3B01G384900 chr2D 92.982 57 3 1 287 343 574383079 574383134 6.750000e-12 82.4
23 TraesCS3B01G384900 chr2D 100.000 29 0 0 260 288 291840938 291840910 1.000000e-03 54.7
24 TraesCS3B01G384900 chr2A 80.208 96 7 8 259 343 155257519 155257425 8.800000e-06 62.1
25 TraesCS3B01G384900 chr6A 100.000 30 0 0 259 288 44838306 44838335 4.090000e-04 56.5
26 TraesCS3B01G384900 chr6A 100.000 30 0 0 259 288 44853096 44853125 4.090000e-04 56.5
27 TraesCS3B01G384900 chr6A 100.000 30 0 0 259 288 44858104 44858133 4.090000e-04 56.5
28 TraesCS3B01G384900 chr4B 96.970 33 0 1 256 287 475454776 475454744 1.000000e-03 54.7
29 TraesCS3B01G384900 chr5B 87.234 47 5 1 261 307 115398429 115398384 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G384900 chr3B 605018426 605021365 2939 True 5430.000000 5430 100.000000 1 2940 1 chr3B.!!$R2 2939
1 TraesCS3B01G384900 chr3D 457407426 457410772 3346 True 367.666667 798 89.225833 2 2937 6 chr3D.!!$R1 2935
2 TraesCS3B01G384900 chr3A 600321010 600324166 3156 True 354.750000 758 83.738000 1 2874 4 chr3A.!!$R1 2873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 1005 0.035439 TTCCGCTCCTTTTGCCTAGG 60.035 55.0 3.67 3.67 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2586 3388 0.103026 GAATGCGCTTCCATTTCCCC 59.897 55.0 9.73 0.0 35.67 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 0.593128 ATGACTTGTTGAGCCGTTGC 59.407 50.000 0.00 0.00 37.95 4.17
44 46 1.349627 GAGCCGTTGCGACATCATG 59.650 57.895 4.64 0.00 44.33 3.07
51 53 1.196808 GTTGCGACATCATGTTTCGGT 59.803 47.619 0.00 0.00 0.00 4.69
58 60 4.434725 CGACATCATGTTTCGGTTCAAGAG 60.435 45.833 0.00 0.00 0.00 2.85
64 66 4.875544 TGTTTCGGTTCAAGAGTTTCAG 57.124 40.909 0.00 0.00 0.00 3.02
71 75 4.384208 CGGTTCAAGAGTTTCAGGGGATAT 60.384 45.833 0.00 0.00 0.00 1.63
72 76 5.163343 CGGTTCAAGAGTTTCAGGGGATATA 60.163 44.000 0.00 0.00 0.00 0.86
114 118 9.006215 GTATACGGAAATGCATTTTTGTACTTC 57.994 33.333 26.41 19.14 0.00 3.01
115 119 6.084326 ACGGAAATGCATTTTTGTACTTCT 57.916 33.333 24.81 0.00 0.00 2.85
116 120 7.209471 ACGGAAATGCATTTTTGTACTTCTA 57.791 32.000 24.81 0.00 0.00 2.10
117 121 7.826690 ACGGAAATGCATTTTTGTACTTCTAT 58.173 30.769 24.81 0.00 0.00 1.98
155 200 7.936584 TGTTGAATGGAAATATATTTCGTCCC 58.063 34.615 24.92 15.96 45.37 4.46
156 201 7.777910 TGTTGAATGGAAATATATTTCGTCCCT 59.222 33.333 24.92 12.09 45.37 4.20
158 203 8.165239 TGAATGGAAATATATTTCGTCCCTTG 57.835 34.615 24.92 0.00 45.37 3.61
159 204 6.575162 ATGGAAATATATTTCGTCCCTTGC 57.425 37.500 24.92 13.23 45.37 4.01
160 205 4.825085 TGGAAATATATTTCGTCCCTTGCC 59.175 41.667 24.92 13.39 45.37 4.52
162 207 4.724279 AATATATTTCGTCCCTTGCCCT 57.276 40.909 0.00 0.00 0.00 5.19
173 223 0.320160 CCTTGCCCTTTTTCTGCTGC 60.320 55.000 0.00 0.00 0.00 5.25
177 227 1.247567 GCCCTTTTTCTGCTGCTACA 58.752 50.000 0.00 0.00 0.00 2.74
179 229 2.352127 GCCCTTTTTCTGCTGCTACAAG 60.352 50.000 0.00 0.00 0.00 3.16
187 237 2.158827 TCTGCTGCTACAAGGTTGTTGA 60.159 45.455 8.25 0.00 42.35 3.18
201 251 7.554118 ACAAGGTTGTTGAATATCATCCACTAG 59.446 37.037 0.00 0.00 38.47 2.57
206 256 9.764363 GTTGTTGAATATCATCCACTAGTATGA 57.236 33.333 10.11 10.11 36.60 2.15
230 294 2.393271 TTTTTGTGGTTGCTTGTGGG 57.607 45.000 0.00 0.00 0.00 4.61
232 296 2.145397 TTTGTGGTTGCTTGTGGGTA 57.855 45.000 0.00 0.00 0.00 3.69
267 369 6.352516 TCATCTTTTCTCTGAATCTTAGGGC 58.647 40.000 0.00 0.00 0.00 5.19
280 382 5.659849 ATCTTAGGGCCTCTTTGATTCAT 57.340 39.130 10.74 0.00 0.00 2.57
283 385 3.872459 AGGGCCTCTTTGATTCATAGG 57.128 47.619 0.00 5.38 0.00 2.57
287 389 4.522022 GGGCCTCTTTGATTCATAGGATTG 59.478 45.833 0.84 0.00 0.00 2.67
288 390 4.522022 GGCCTCTTTGATTCATAGGATTGG 59.478 45.833 12.17 7.65 0.00 3.16
289 391 4.522022 GCCTCTTTGATTCATAGGATTGGG 59.478 45.833 12.17 5.91 0.00 4.12
291 393 6.367983 CCTCTTTGATTCATAGGATTGGGAA 58.632 40.000 4.57 0.00 0.00 3.97
292 394 7.008941 CCTCTTTGATTCATAGGATTGGGAAT 58.991 38.462 4.57 0.00 32.97 3.01
293 395 8.166061 CCTCTTTGATTCATAGGATTGGGAATA 58.834 37.037 4.57 0.00 30.60 1.75
295 397 8.166061 TCTTTGATTCATAGGATTGGGAATAGG 58.834 37.037 4.57 0.00 30.60 2.57
296 398 7.646654 TTGATTCATAGGATTGGGAATAGGA 57.353 36.000 0.00 0.00 30.60 2.94
297 399 7.646654 TGATTCATAGGATTGGGAATAGGAA 57.353 36.000 0.00 0.00 30.60 3.36
298 400 8.056088 TGATTCATAGGATTGGGAATAGGAAA 57.944 34.615 0.00 0.00 30.60 3.13
299 401 8.510283 TGATTCATAGGATTGGGAATAGGAAAA 58.490 33.333 0.00 0.00 30.60 2.29
300 402 9.367160 GATTCATAGGATTGGGAATAGGAAAAA 57.633 33.333 0.00 0.00 30.60 1.94
301 403 9.903190 ATTCATAGGATTGGGAATAGGAAAAAT 57.097 29.630 0.00 0.00 0.00 1.82
307 409 9.194512 AGGATTGGGAATAGGAAAAATATAGGA 57.805 33.333 0.00 0.00 0.00 2.94
311 413 9.600432 TTGGGAATAGGAAAAATATAGGATTGG 57.400 33.333 0.00 0.00 0.00 3.16
312 414 8.176780 TGGGAATAGGAAAAATATAGGATTGGG 58.823 37.037 0.00 0.00 0.00 4.12
313 415 8.398743 GGGAATAGGAAAAATATAGGATTGGGA 58.601 37.037 0.00 0.00 0.00 4.37
314 416 9.997172 GGAATAGGAAAAATATAGGATTGGGAT 57.003 33.333 0.00 0.00 0.00 3.85
317 419 9.981460 ATAGGAAAAATATAGGATTGGGATGTC 57.019 33.333 0.00 0.00 0.00 3.06
319 421 8.459394 AGGAAAAATATAGGATTGGGATGTCAT 58.541 33.333 0.00 0.00 0.00 3.06
321 423 7.472334 AAAATATAGGATTGGGATGTCATGC 57.528 36.000 0.00 0.00 0.00 4.06
322 424 6.398655 AATATAGGATTGGGATGTCATGCT 57.601 37.500 4.18 0.00 0.00 3.79
323 425 2.653234 AGGATTGGGATGTCATGCTC 57.347 50.000 4.18 0.00 0.00 4.26
324 426 1.848388 AGGATTGGGATGTCATGCTCA 59.152 47.619 4.18 0.00 0.00 4.26
326 428 2.818432 GGATTGGGATGTCATGCTCATC 59.182 50.000 16.83 16.83 40.38 2.92
328 430 3.657398 TTGGGATGTCATGCTCATCTT 57.343 42.857 21.20 0.00 40.76 2.40
335 466 5.279859 GGATGTCATGCTCATCTTCATCCTA 60.280 44.000 21.20 0.00 43.43 2.94
371 502 7.835822 TCAAAGAGTTTTGAGTGAATGGAAAA 58.164 30.769 0.00 0.00 45.77 2.29
372 503 8.310382 TCAAAGAGTTTTGAGTGAATGGAAAAA 58.690 29.630 0.00 0.00 45.77 1.94
373 504 9.101655 CAAAGAGTTTTGAGTGAATGGAAAAAT 57.898 29.630 0.00 0.00 45.21 1.82
374 505 9.671279 AAAGAGTTTTGAGTGAATGGAAAAATT 57.329 25.926 0.00 0.00 0.00 1.82
375 506 8.877808 AGAGTTTTGAGTGAATGGAAAAATTC 57.122 30.769 0.00 0.00 37.13 2.17
376 507 8.699130 AGAGTTTTGAGTGAATGGAAAAATTCT 58.301 29.630 0.00 0.00 37.44 2.40
377 508 9.317936 GAGTTTTGAGTGAATGGAAAAATTCTT 57.682 29.630 0.00 0.00 37.44 2.52
378 509 9.101655 AGTTTTGAGTGAATGGAAAAATTCTTG 57.898 29.630 0.00 0.00 37.44 3.02
381 512 9.748708 TTTGAGTGAATGGAAAAATTCTTGTAG 57.251 29.630 0.00 0.00 37.44 2.74
382 513 7.885297 TGAGTGAATGGAAAAATTCTTGTAGG 58.115 34.615 0.00 0.00 37.44 3.18
383 514 7.723616 TGAGTGAATGGAAAAATTCTTGTAGGA 59.276 33.333 0.00 0.00 37.44 2.94
385 654 9.093458 AGTGAATGGAAAAATTCTTGTAGGATT 57.907 29.630 0.00 0.00 37.44 3.01
387 656 9.087871 TGAATGGAAAAATTCTTGTAGGATTCA 57.912 29.630 0.00 0.00 37.44 2.57
407 676 5.787953 TCAATCCTTTGAATCAAACAGCA 57.212 34.783 4.03 0.00 38.90 4.41
408 677 6.159299 TCAATCCTTTGAATCAAACAGCAA 57.841 33.333 4.03 0.00 38.90 3.91
410 679 4.998671 TCCTTTGAATCAAACAGCAACA 57.001 36.364 4.03 0.00 0.00 3.33
413 682 6.680810 TCCTTTGAATCAAACAGCAACATAG 58.319 36.000 4.03 0.00 0.00 2.23
416 685 6.647334 TTGAATCAAACAGCAACATAGGAA 57.353 33.333 0.00 0.00 0.00 3.36
417 686 6.647334 TGAATCAAACAGCAACATAGGAAA 57.353 33.333 0.00 0.00 0.00 3.13
418 687 6.680810 TGAATCAAACAGCAACATAGGAAAG 58.319 36.000 0.00 0.00 0.00 2.62
420 689 6.899393 ATCAAACAGCAACATAGGAAAGAA 57.101 33.333 0.00 0.00 0.00 2.52
421 690 6.899393 TCAAACAGCAACATAGGAAAGAAT 57.101 33.333 0.00 0.00 0.00 2.40
494 763 8.690203 TCAAAGGATATTTCTCAAGAAACACA 57.310 30.769 7.32 0.00 45.55 3.72
495 764 9.130661 TCAAAGGATATTTCTCAAGAAACACAA 57.869 29.630 7.32 0.00 45.55 3.33
496 765 9.748708 CAAAGGATATTTCTCAAGAAACACAAA 57.251 29.630 7.32 0.00 45.55 2.83
537 806 0.974010 TCTGGATCCTTACCGGCGTT 60.974 55.000 14.23 0.00 34.13 4.84
544 814 0.239082 CCTTACCGGCGTTTGGTTTC 59.761 55.000 6.01 0.00 40.96 2.78
548 818 1.445871 ACCGGCGTTTGGTTTCTATC 58.554 50.000 6.01 0.00 35.82 2.08
550 820 0.247537 CGGCGTTTGGTTTCTATCGC 60.248 55.000 0.00 0.00 42.32 4.58
561 831 1.922570 TTCTATCGCTTCTGGAACGC 58.077 50.000 0.00 0.00 0.00 4.84
578 848 2.035442 GCTCCAGCAAGACCCGTTC 61.035 63.158 0.00 0.00 41.59 3.95
589 866 2.668212 CCCGTTCGCTGCCAGAAA 60.668 61.111 0.00 0.00 0.00 2.52
596 873 1.896220 TCGCTGCCAGAAAACAAGAT 58.104 45.000 0.00 0.00 0.00 2.40
597 874 1.536766 TCGCTGCCAGAAAACAAGATG 59.463 47.619 0.00 0.00 0.00 2.90
605 882 3.885297 CCAGAAAACAAGATGTGTGGTCT 59.115 43.478 0.00 0.00 40.60 3.85
611 888 1.955778 CAAGATGTGTGGTCTTTGCCA 59.044 47.619 0.00 0.00 33.82 4.92
619 896 1.079612 GGTCTTTGCCAGCCAATGC 60.080 57.895 0.00 0.00 32.49 3.56
621 899 2.125832 CTTTGCCAGCCAATGCGG 60.126 61.111 0.00 0.00 44.33 5.69
632 910 3.353836 AATGCGGTGTGTGGCGAC 61.354 61.111 0.00 0.00 0.00 5.19
636 914 3.345808 CGGTGTGTGGCGACCTTG 61.346 66.667 0.00 0.00 0.00 3.61
660 952 0.881118 ATTGTTCCAGATGCGCGTTT 59.119 45.000 8.43 0.00 0.00 3.60
661 953 0.040514 TTGTTCCAGATGCGCGTTTG 60.041 50.000 12.97 12.97 0.00 2.93
662 954 1.797537 GTTCCAGATGCGCGTTTGC 60.798 57.895 14.38 0.00 37.91 3.68
682 974 3.185594 TGCAATTCGTACAGTTGTAGCAC 59.814 43.478 0.00 0.00 0.00 4.40
683 975 3.424433 GCAATTCGTACAGTTGTAGCACC 60.424 47.826 0.00 0.00 0.00 5.01
684 976 2.054687 TTCGTACAGTTGTAGCACCG 57.945 50.000 0.00 0.00 0.00 4.94
690 982 0.512952 CAGTTGTAGCACCGCTTGTC 59.487 55.000 0.00 0.00 40.44 3.18
692 984 1.302192 TTGTAGCACCGCTTGTCCC 60.302 57.895 0.00 0.00 40.44 4.46
694 986 1.003718 GTAGCACCGCTTGTCCCTT 60.004 57.895 0.00 0.00 40.44 3.95
697 989 2.626780 GCACCGCTTGTCCCTTTCC 61.627 63.158 0.00 0.00 0.00 3.13
698 990 2.032071 ACCGCTTGTCCCTTTCCG 59.968 61.111 0.00 0.00 0.00 4.30
699 991 3.431725 CCGCTTGTCCCTTTCCGC 61.432 66.667 0.00 0.00 0.00 5.54
700 992 2.358737 CGCTTGTCCCTTTCCGCT 60.359 61.111 0.00 0.00 0.00 5.52
701 993 2.391389 CGCTTGTCCCTTTCCGCTC 61.391 63.158 0.00 0.00 0.00 5.03
702 994 2.041115 GCTTGTCCCTTTCCGCTCC 61.041 63.158 0.00 0.00 0.00 4.70
703 995 1.679898 CTTGTCCCTTTCCGCTCCT 59.320 57.895 0.00 0.00 0.00 3.69
707 999 0.881796 GTCCCTTTCCGCTCCTTTTG 59.118 55.000 0.00 0.00 0.00 2.44
708 1000 0.893727 TCCCTTTCCGCTCCTTTTGC 60.894 55.000 0.00 0.00 0.00 3.68
709 1001 1.586541 CCTTTCCGCTCCTTTTGCC 59.413 57.895 0.00 0.00 0.00 4.52
711 1003 1.613255 CCTTTCCGCTCCTTTTGCCTA 60.613 52.381 0.00 0.00 0.00 3.93
712 1004 1.740025 CTTTCCGCTCCTTTTGCCTAG 59.260 52.381 0.00 0.00 0.00 3.02
713 1005 0.035439 TTCCGCTCCTTTTGCCTAGG 60.035 55.000 3.67 3.67 0.00 3.02
714 1006 0.907704 TCCGCTCCTTTTGCCTAGGA 60.908 55.000 14.75 0.00 39.46 2.94
715 1007 0.744771 CCGCTCCTTTTGCCTAGGAC 60.745 60.000 14.75 4.44 36.88 3.85
716 1008 0.250513 CGCTCCTTTTGCCTAGGACT 59.749 55.000 14.75 0.00 36.88 3.85
717 1009 1.740718 CGCTCCTTTTGCCTAGGACTC 60.741 57.143 14.75 0.00 36.88 3.36
719 1011 1.550976 CTCCTTTTGCCTAGGACTCGT 59.449 52.381 14.75 0.00 36.88 4.18
720 1012 2.758979 CTCCTTTTGCCTAGGACTCGTA 59.241 50.000 14.75 0.00 36.88 3.43
721 1013 2.758979 TCCTTTTGCCTAGGACTCGTAG 59.241 50.000 14.75 1.08 36.88 3.51
722 1014 2.541556 CTTTTGCCTAGGACTCGTAGC 58.458 52.381 14.75 0.00 0.00 3.58
723 1015 1.848652 TTTGCCTAGGACTCGTAGCT 58.151 50.000 14.75 0.00 0.00 3.32
724 1016 2.723322 TTGCCTAGGACTCGTAGCTA 57.277 50.000 14.75 0.00 0.00 3.32
725 1017 2.723322 TGCCTAGGACTCGTAGCTAA 57.277 50.000 14.75 0.00 0.00 3.09
726 1018 3.008835 TGCCTAGGACTCGTAGCTAAA 57.991 47.619 14.75 0.00 0.00 1.85
727 1019 3.359033 TGCCTAGGACTCGTAGCTAAAA 58.641 45.455 14.75 0.00 0.00 1.52
728 1020 3.129988 TGCCTAGGACTCGTAGCTAAAAC 59.870 47.826 14.75 0.00 0.00 2.43
729 1021 3.380954 GCCTAGGACTCGTAGCTAAAACT 59.619 47.826 14.75 0.00 0.00 2.66
730 1022 4.734108 GCCTAGGACTCGTAGCTAAAACTG 60.734 50.000 14.75 0.00 0.00 3.16
732 1024 2.561419 AGGACTCGTAGCTAAAACTGCA 59.439 45.455 0.00 0.00 0.00 4.41
733 1025 3.195825 AGGACTCGTAGCTAAAACTGCAT 59.804 43.478 0.00 0.00 0.00 3.96
734 1026 3.552294 GGACTCGTAGCTAAAACTGCATC 59.448 47.826 0.00 0.00 0.00 3.91
735 1027 4.425520 GACTCGTAGCTAAAACTGCATCT 58.574 43.478 0.00 0.00 0.00 2.90
736 1028 4.425520 ACTCGTAGCTAAAACTGCATCTC 58.574 43.478 0.00 0.00 0.00 2.75
737 1029 3.435566 TCGTAGCTAAAACTGCATCTCG 58.564 45.455 0.00 0.00 0.00 4.04
738 1030 2.034507 CGTAGCTAAAACTGCATCTCGC 60.035 50.000 0.00 0.00 42.89 5.03
746 1038 5.376854 AAAACTGCATCTCGCTATTTGTT 57.623 34.783 0.00 0.00 43.06 2.83
747 1039 6.494893 AAAACTGCATCTCGCTATTTGTTA 57.505 33.333 0.00 0.00 43.06 2.41
757 1049 5.926542 TCTCGCTATTTGTTATCTGTATGGC 59.073 40.000 0.00 0.00 0.00 4.40
759 1051 6.288294 TCGCTATTTGTTATCTGTATGGCTT 58.712 36.000 0.00 0.00 0.00 4.35
793 1085 5.296813 AGAATTCACCACGAATAGCAAAC 57.703 39.130 8.44 0.00 43.83 2.93
794 1086 4.156008 AGAATTCACCACGAATAGCAAACC 59.844 41.667 8.44 0.00 43.83 3.27
795 1087 1.434555 TCACCACGAATAGCAAACCG 58.565 50.000 0.00 0.00 0.00 4.44
796 1088 0.179200 CACCACGAATAGCAAACCGC 60.179 55.000 0.00 0.00 42.91 5.68
801 1098 1.604755 ACGAATAGCAAACCGCAAACA 59.395 42.857 0.00 0.00 46.13 2.83
813 1110 1.665735 CCGCAAACACGAAATTCCTGG 60.666 52.381 0.00 0.00 34.06 4.45
834 1132 2.874086 GCATTTTGGCACTTTCTTTGCT 59.126 40.909 0.00 0.00 40.07 3.91
851 1152 5.418840 TCTTTGCTGAACCCTGAATAAATCC 59.581 40.000 0.00 0.00 0.00 3.01
852 1153 4.591321 TGCTGAACCCTGAATAAATCCT 57.409 40.909 0.00 0.00 0.00 3.24
853 1154 5.708736 TGCTGAACCCTGAATAAATCCTA 57.291 39.130 0.00 0.00 0.00 2.94
854 1155 5.684704 TGCTGAACCCTGAATAAATCCTAG 58.315 41.667 0.00 0.00 0.00 3.02
857 1158 5.437060 TGAACCCTGAATAAATCCTAGCAC 58.563 41.667 0.00 0.00 0.00 4.40
860 1161 3.181454 CCCTGAATAAATCCTAGCACCGT 60.181 47.826 0.00 0.00 0.00 4.83
864 1166 3.814005 ATAAATCCTAGCACCGTCGTT 57.186 42.857 0.00 0.00 0.00 3.85
870 1172 1.467035 CCTAGCACCGTCGTTACTCAC 60.467 57.143 0.00 0.00 0.00 3.51
892 1194 1.002134 ACACGCTCCCCATCCTTTG 60.002 57.895 0.00 0.00 0.00 2.77
911 1244 1.289066 CTCGTCTCCCTTGCACGAA 59.711 57.895 0.00 0.00 41.74 3.85
912 1245 0.734253 CTCGTCTCCCTTGCACGAAG 60.734 60.000 0.00 0.00 41.74 3.79
913 1246 2.383527 CGTCTCCCTTGCACGAAGC 61.384 63.158 0.00 0.00 45.96 3.86
914 1247 2.035442 GTCTCCCTTGCACGAAGCC 61.035 63.158 0.00 0.00 44.83 4.35
915 1248 2.747855 CTCCCTTGCACGAAGCCC 60.748 66.667 0.00 0.00 44.83 5.19
916 1249 4.344865 TCCCTTGCACGAAGCCCC 62.345 66.667 0.00 0.00 44.83 5.80
918 1251 4.697756 CCTTGCACGAAGCCCCGA 62.698 66.667 2.21 0.00 44.83 5.14
919 1252 2.436646 CTTGCACGAAGCCCCGAT 60.437 61.111 2.21 0.00 44.83 4.18
920 1253 2.435938 TTGCACGAAGCCCCGATC 60.436 61.111 2.21 0.00 44.83 3.69
921 1254 2.859273 CTTGCACGAAGCCCCGATCT 62.859 60.000 2.21 0.00 44.83 2.75
922 1255 1.609635 TTGCACGAAGCCCCGATCTA 61.610 55.000 2.21 0.00 44.83 1.98
923 1256 1.143183 GCACGAAGCCCCGATCTAA 59.857 57.895 2.21 0.00 37.23 2.10
924 1257 1.152383 GCACGAAGCCCCGATCTAAC 61.152 60.000 2.21 0.00 37.23 2.34
925 1258 0.870307 CACGAAGCCCCGATCTAACG 60.870 60.000 2.21 0.00 0.00 3.18
926 1259 1.949631 CGAAGCCCCGATCTAACGC 60.950 63.158 0.00 0.00 0.00 4.84
927 1260 1.143183 GAAGCCCCGATCTAACGCA 59.857 57.895 0.00 0.00 0.00 5.24
928 1261 1.152383 GAAGCCCCGATCTAACGCAC 61.152 60.000 0.00 0.00 0.00 5.34
929 1262 2.901051 AAGCCCCGATCTAACGCACG 62.901 60.000 0.00 0.00 0.00 5.34
930 1263 2.960129 CCCCGATCTAACGCACGC 60.960 66.667 0.00 0.00 0.00 5.34
931 1264 3.320078 CCCGATCTAACGCACGCG 61.320 66.667 10.36 10.36 46.03 6.01
932 1265 3.320078 CCGATCTAACGCACGCGG 61.320 66.667 16.70 0.00 44.69 6.46
933 1266 3.972803 CGATCTAACGCACGCGGC 61.973 66.667 16.70 10.52 44.69 6.53
934 1267 2.582498 GATCTAACGCACGCGGCT 60.582 61.111 16.70 4.98 44.69 5.52
935 1268 2.860628 GATCTAACGCACGCGGCTG 61.861 63.158 16.70 0.56 44.69 4.85
947 1280 4.012895 CGGCTGCGTGGTGAACAC 62.013 66.667 0.00 0.00 46.78 3.32
955 1288 4.268720 TGGTGAACACAAAGCCCC 57.731 55.556 7.25 0.00 0.00 5.80
956 1289 1.826054 TGGTGAACACAAAGCCCCG 60.826 57.895 7.25 0.00 0.00 5.73
957 1290 2.561037 GGTGAACACAAAGCCCCGG 61.561 63.158 7.25 0.00 0.00 5.73
970 1303 1.070105 CCCCGGTCTGACACGAAAA 59.930 57.895 16.62 0.00 0.00 2.29
983 1316 2.441378 CGAAAATCTCGTCGCCGCA 61.441 57.895 0.00 0.00 42.89 5.69
984 1317 1.345176 GAAAATCTCGTCGCCGCAG 59.655 57.895 0.00 0.00 0.00 5.18
990 1331 3.758088 CTCGTCGCCGCAGCATACT 62.758 63.158 0.00 0.00 39.83 2.12
1091 1435 2.126031 GAGCGTCTCCGTGAACCC 60.126 66.667 0.00 0.00 36.15 4.11
1104 1448 2.604686 AACCCGAGAGCTCAGCCA 60.605 61.111 17.77 0.00 0.00 4.75
1289 1649 4.819761 TCTGATGCTCGGTGCGCC 62.820 66.667 6.11 6.11 46.63 6.53
1301 1661 2.004583 GGTGCGCCGATATTGCTATA 57.995 50.000 4.18 0.00 0.00 1.31
1302 1662 2.550978 GGTGCGCCGATATTGCTATAT 58.449 47.619 4.18 0.00 0.00 0.86
1303 1663 2.936498 GGTGCGCCGATATTGCTATATT 59.064 45.455 4.18 0.00 0.00 1.28
1305 1665 2.351418 TGCGCCGATATTGCTATATTGC 59.649 45.455 4.18 1.87 29.85 3.56
1306 1666 2.597505 GCGCCGATATTGCTATATTGCG 60.598 50.000 26.09 26.09 43.57 4.85
1307 1667 2.603110 CGCCGATATTGCTATATTGCGT 59.397 45.455 24.06 0.00 40.09 5.24
1313 1673 6.362686 CGATATTGCTATATTGCGTTTGTGT 58.637 36.000 4.70 0.00 35.36 3.72
1354 1714 3.787001 GGGAGGCTCAAGGACCGG 61.787 72.222 17.69 0.00 0.00 5.28
1436 1797 3.562973 CGAGAAGCACGGTAGGTATCTTA 59.437 47.826 0.00 0.00 0.00 2.10
1438 1799 5.278364 CGAGAAGCACGGTAGGTATCTTATT 60.278 44.000 0.00 0.00 0.00 1.40
1441 1802 7.336396 AGAAGCACGGTAGGTATCTTATTTTT 58.664 34.615 0.00 0.00 0.00 1.94
1462 1823 2.940994 TCTCCTCCTTCTCGATCGAT 57.059 50.000 19.78 0.00 0.00 3.59
1465 1826 0.885196 CCTCCTTCTCGATCGATCCC 59.115 60.000 19.78 0.00 0.00 3.85
1472 1833 1.202734 TCTCGATCGATCCCGGTAGTT 60.203 52.381 19.78 0.00 36.24 2.24
1474 1835 0.949397 CGATCGATCCCGGTAGTTGA 59.051 55.000 19.51 0.00 36.24 3.18
1475 1836 1.334779 CGATCGATCCCGGTAGTTGAC 60.335 57.143 19.51 0.00 36.24 3.18
1476 1837 1.955080 GATCGATCCCGGTAGTTGACT 59.045 52.381 14.76 0.00 36.24 3.41
1480 1841 2.033049 CGATCCCGGTAGTTGACTAGTG 59.967 54.545 0.00 0.00 0.00 2.74
1481 1842 1.843368 TCCCGGTAGTTGACTAGTGG 58.157 55.000 0.00 0.00 0.00 4.00
1485 1846 2.165167 CGGTAGTTGACTAGTGGTGGA 58.835 52.381 0.00 0.00 0.00 4.02
1486 1847 2.559668 CGGTAGTTGACTAGTGGTGGAA 59.440 50.000 0.00 0.00 0.00 3.53
1487 1848 3.194968 CGGTAGTTGACTAGTGGTGGAAT 59.805 47.826 0.00 0.00 0.00 3.01
1489 1850 4.222145 GGTAGTTGACTAGTGGTGGAATGA 59.778 45.833 0.00 0.00 0.00 2.57
1490 1851 4.974645 AGTTGACTAGTGGTGGAATGAA 57.025 40.909 0.00 0.00 0.00 2.57
1491 1852 5.505181 AGTTGACTAGTGGTGGAATGAAT 57.495 39.130 0.00 0.00 0.00 2.57
1492 1853 5.248640 AGTTGACTAGTGGTGGAATGAATG 58.751 41.667 0.00 0.00 0.00 2.67
1493 1854 4.220693 TGACTAGTGGTGGAATGAATGG 57.779 45.455 0.00 0.00 0.00 3.16
1494 1855 3.843619 TGACTAGTGGTGGAATGAATGGA 59.156 43.478 0.00 0.00 0.00 3.41
1495 1856 4.192317 GACTAGTGGTGGAATGAATGGAC 58.808 47.826 0.00 0.00 0.00 4.02
1497 1858 1.094785 GTGGTGGAATGAATGGACCG 58.905 55.000 0.00 0.00 0.00 4.79
1498 1859 0.988063 TGGTGGAATGAATGGACCGA 59.012 50.000 0.00 0.00 0.00 4.69
1500 1861 1.949525 GGTGGAATGAATGGACCGATG 59.050 52.381 0.00 0.00 0.00 3.84
1501 1862 2.421388 GGTGGAATGAATGGACCGATGA 60.421 50.000 0.00 0.00 0.00 2.92
1502 1863 3.278574 GTGGAATGAATGGACCGATGAA 58.721 45.455 0.00 0.00 0.00 2.57
1503 1864 3.313526 GTGGAATGAATGGACCGATGAAG 59.686 47.826 0.00 0.00 0.00 3.02
1505 1866 2.715749 ATGAATGGACCGATGAAGCA 57.284 45.000 0.00 0.00 0.00 3.91
1506 1867 2.488204 TGAATGGACCGATGAAGCAA 57.512 45.000 0.00 0.00 0.00 3.91
1507 1868 3.003394 TGAATGGACCGATGAAGCAAT 57.997 42.857 0.00 0.00 0.00 3.56
1508 1869 2.945008 TGAATGGACCGATGAAGCAATC 59.055 45.455 0.00 0.00 0.00 2.67
1512 1873 0.931005 GACCGATGAAGCAATCCGTC 59.069 55.000 0.00 0.00 31.03 4.79
1522 1883 2.987232 AGCAATCCGTCTTTCCTTACC 58.013 47.619 0.00 0.00 0.00 2.85
1523 1884 2.304761 AGCAATCCGTCTTTCCTTACCA 59.695 45.455 0.00 0.00 0.00 3.25
1527 1888 0.390735 CCGTCTTTCCTTACCACCGG 60.391 60.000 0.00 0.00 0.00 5.28
1549 1910 1.449423 TGTCTGTGCGTGTGCTGTT 60.449 52.632 0.00 0.00 43.34 3.16
1626 1992 2.885861 CTCTTCCACGAGTCCCGG 59.114 66.667 0.00 0.00 43.93 5.73
1733 2225 3.760580 CAAGACTTGGAGGACACTCTT 57.239 47.619 7.35 0.00 43.46 2.85
1795 2290 5.721960 AGGGTATGGCTTAGATATAGTGGTG 59.278 44.000 0.00 0.00 0.00 4.17
1796 2291 5.104900 GGGTATGGCTTAGATATAGTGGTGG 60.105 48.000 0.00 0.00 0.00 4.61
1802 2297 6.718454 TGGCTTAGATATAGTGGTGGTAGTAC 59.282 42.308 0.00 0.00 0.00 2.73
1803 2298 6.947158 GGCTTAGATATAGTGGTGGTAGTACT 59.053 42.308 0.00 0.00 0.00 2.73
1804 2299 8.105829 GGCTTAGATATAGTGGTGGTAGTACTA 58.894 40.741 0.00 0.00 0.00 1.82
1805 2300 9.165035 GCTTAGATATAGTGGTGGTAGTACTAG 57.835 40.741 1.87 0.00 31.16 2.57
1806 2301 9.165035 CTTAGATATAGTGGTGGTAGTACTAGC 57.835 40.741 22.42 22.42 31.16 3.42
1807 2302 7.332433 AGATATAGTGGTGGTAGTACTAGCT 57.668 40.000 27.42 13.18 34.84 3.32
1812 2307 5.548406 AGTGGTGGTAGTACTAGCTTTTTG 58.452 41.667 27.42 0.00 34.84 2.44
1816 2311 4.019950 GTGGTAGTACTAGCTTTTTGGGGA 60.020 45.833 27.42 6.32 34.84 4.81
2089 2690 4.452455 GTGAAACCAACGAGATTCAGACAT 59.548 41.667 0.00 0.00 32.85 3.06
2168 2945 1.160137 GCATGGTTCTGTCCAGTGAC 58.840 55.000 0.00 0.00 41.05 3.67
2169 2946 1.432514 CATGGTTCTGTCCAGTGACG 58.567 55.000 0.00 0.00 44.86 4.35
2186 2966 2.043652 GCCAGCCACACATCCCAT 60.044 61.111 0.00 0.00 0.00 4.00
2205 2985 2.488204 TCATGCGATTTTCTGGGTGA 57.512 45.000 0.00 0.00 0.00 4.02
2206 2986 2.789213 TCATGCGATTTTCTGGGTGAA 58.211 42.857 0.00 0.00 0.00 3.18
2207 2987 2.749076 TCATGCGATTTTCTGGGTGAAG 59.251 45.455 0.00 0.00 35.89 3.02
2209 2989 1.202879 TGCGATTTTCTGGGTGAAGGT 60.203 47.619 0.00 0.00 35.89 3.50
2210 2990 2.039216 TGCGATTTTCTGGGTGAAGGTA 59.961 45.455 0.00 0.00 35.89 3.08
2211 2991 2.678336 GCGATTTTCTGGGTGAAGGTAG 59.322 50.000 0.00 0.00 35.89 3.18
2212 2992 3.868754 GCGATTTTCTGGGTGAAGGTAGT 60.869 47.826 0.00 0.00 35.89 2.73
2213 2993 3.684788 CGATTTTCTGGGTGAAGGTAGTG 59.315 47.826 0.00 0.00 35.89 2.74
2214 2994 2.561478 TTTCTGGGTGAAGGTAGTGC 57.439 50.000 0.00 0.00 35.89 4.40
2215 2995 1.729586 TTCTGGGTGAAGGTAGTGCT 58.270 50.000 0.00 0.00 0.00 4.40
2216 2996 1.729586 TCTGGGTGAAGGTAGTGCTT 58.270 50.000 0.00 0.00 0.00 3.91
2217 2997 2.054799 TCTGGGTGAAGGTAGTGCTTT 58.945 47.619 0.00 0.00 0.00 3.51
2218 2998 3.244582 TCTGGGTGAAGGTAGTGCTTTA 58.755 45.455 0.00 0.00 0.00 1.85
2219 2999 3.649023 TCTGGGTGAAGGTAGTGCTTTAA 59.351 43.478 0.00 0.00 0.00 1.52
2220 3000 4.103469 TCTGGGTGAAGGTAGTGCTTTAAA 59.897 41.667 0.00 0.00 0.00 1.52
2221 3001 4.139038 TGGGTGAAGGTAGTGCTTTAAAC 58.861 43.478 0.00 0.00 0.00 2.01
2222 3002 3.187842 GGGTGAAGGTAGTGCTTTAAACG 59.812 47.826 0.00 0.00 0.00 3.60
2223 3003 3.364664 GGTGAAGGTAGTGCTTTAAACGC 60.365 47.826 3.55 3.55 0.00 4.84
2224 3004 3.497262 GTGAAGGTAGTGCTTTAAACGCT 59.503 43.478 9.87 9.07 0.00 5.07
2225 3005 3.744426 TGAAGGTAGTGCTTTAAACGCTC 59.256 43.478 9.87 7.16 0.00 5.03
2226 3006 3.679824 AGGTAGTGCTTTAAACGCTCT 57.320 42.857 14.31 14.31 35.62 4.09
2227 3007 4.004196 AGGTAGTGCTTTAAACGCTCTT 57.996 40.909 14.79 1.66 33.73 2.85
2228 3008 5.143376 AGGTAGTGCTTTAAACGCTCTTA 57.857 39.130 14.79 3.67 33.73 2.10
2229 3009 5.731591 AGGTAGTGCTTTAAACGCTCTTAT 58.268 37.500 14.79 4.66 33.73 1.73
2230 3010 6.870769 AGGTAGTGCTTTAAACGCTCTTATA 58.129 36.000 14.79 1.66 33.73 0.98
2231 3011 6.979238 AGGTAGTGCTTTAAACGCTCTTATAG 59.021 38.462 14.79 0.00 33.73 1.31
2232 3012 6.755607 GGTAGTGCTTTAAACGCTCTTATAGT 59.244 38.462 14.79 1.48 33.73 2.12
2233 3013 7.917505 GGTAGTGCTTTAAACGCTCTTATAGTA 59.082 37.037 14.79 0.68 33.73 1.82
2234 3014 9.460906 GTAGTGCTTTAAACGCTCTTATAGTAT 57.539 33.333 14.79 0.00 33.73 2.12
2235 3015 8.943909 AGTGCTTTAAACGCTCTTATAGTATT 57.056 30.769 9.87 0.00 0.00 1.89
2236 3016 9.379791 AGTGCTTTAAACGCTCTTATAGTATTT 57.620 29.630 9.87 0.00 0.00 1.40
2237 3017 9.983804 GTGCTTTAAACGCTCTTATAGTATTTT 57.016 29.630 9.87 0.00 0.00 1.82
2279 3059 7.719633 ACATTAAGTAAGTGAAGCCAAAGAGAA 59.280 33.333 0.00 0.00 0.00 2.87
2292 3072 4.391523 GCCAAAGAGAATCAGAGAAGTGAC 59.608 45.833 0.00 0.00 37.82 3.67
2293 3073 5.792741 CCAAAGAGAATCAGAGAAGTGACT 58.207 41.667 0.00 0.00 37.82 3.41
2300 3080 0.598419 CAGAGAAGTGACTGTGCGCA 60.598 55.000 5.66 5.66 0.00 6.09
2313 3093 2.747460 GCGCACAGAATCCTGCCA 60.747 61.111 0.30 0.00 44.16 4.92
2314 3094 2.758089 GCGCACAGAATCCTGCCAG 61.758 63.158 0.30 0.00 44.16 4.85
2315 3095 2.758089 CGCACAGAATCCTGCCAGC 61.758 63.158 0.00 0.00 44.16 4.85
2316 3096 2.413142 GCACAGAATCCTGCCAGCC 61.413 63.158 0.00 0.00 44.16 4.85
2317 3097 1.001764 CACAGAATCCTGCCAGCCA 60.002 57.895 0.00 0.00 44.16 4.75
2318 3098 1.030488 CACAGAATCCTGCCAGCCAG 61.030 60.000 0.00 0.00 44.16 4.85
2319 3099 2.119655 CAGAATCCTGCCAGCCAGC 61.120 63.158 0.00 0.00 40.36 4.85
2320 3100 2.832201 GAATCCTGCCAGCCAGCC 60.832 66.667 0.00 0.00 40.36 4.85
2321 3101 3.650298 GAATCCTGCCAGCCAGCCA 62.650 63.158 0.00 0.00 40.36 4.75
2332 3112 2.664851 CCAGCCAGCACGTCGAAA 60.665 61.111 0.00 0.00 0.00 3.46
2337 3128 2.480555 CAGCACGTCGAAATGGGC 59.519 61.111 0.00 0.00 41.44 5.36
2340 3131 2.032634 GCACGTCGAAATGGGCTGA 61.033 57.895 0.00 0.00 37.85 4.26
2343 3134 1.448540 CGTCGAAATGGGCTGAGCT 60.449 57.895 3.72 0.00 0.00 4.09
2356 3147 3.840890 GCTGAGCTAGCGTATCATACT 57.159 47.619 9.55 0.00 43.63 2.12
2358 3149 3.917380 GCTGAGCTAGCGTATCATACTTG 59.083 47.826 9.55 0.00 43.63 3.16
2367 3158 5.359756 AGCGTATCATACTTGCATTCTTGA 58.640 37.500 0.00 0.00 0.00 3.02
2370 3161 6.563010 GCGTATCATACTTGCATTCTTGAGTC 60.563 42.308 0.00 0.00 0.00 3.36
2371 3162 6.699204 CGTATCATACTTGCATTCTTGAGTCT 59.301 38.462 0.00 0.00 0.00 3.24
2372 3163 7.223582 CGTATCATACTTGCATTCTTGAGTCTT 59.776 37.037 0.00 0.00 0.00 3.01
2373 3164 6.732531 TCATACTTGCATTCTTGAGTCTTG 57.267 37.500 0.00 0.00 0.00 3.02
2377 3168 2.507484 TGCATTCTTGAGTCTTGGGTG 58.493 47.619 0.00 0.00 0.00 4.61
2378 3169 1.200948 GCATTCTTGAGTCTTGGGTGC 59.799 52.381 0.00 0.00 0.00 5.01
2466 3265 0.645355 CGACATCATTCCGTTCCGTG 59.355 55.000 0.00 0.00 0.00 4.94
2506 3305 2.958578 AAGCCCCACCACACGAGTTG 62.959 60.000 0.00 0.00 0.00 3.16
2520 3319 1.203065 GAGTTGGTTCGTTCGTTCGT 58.797 50.000 2.67 0.00 0.00 3.85
2521 3320 1.589779 GAGTTGGTTCGTTCGTTCGTT 59.410 47.619 2.67 0.00 0.00 3.85
2522 3321 1.589779 AGTTGGTTCGTTCGTTCGTTC 59.410 47.619 2.67 0.00 0.00 3.95
2523 3322 0.571661 TTGGTTCGTTCGTTCGTTCG 59.428 50.000 2.67 0.00 0.00 3.95
2524 3323 0.525242 TGGTTCGTTCGTTCGTTCGT 60.525 50.000 9.89 0.00 0.00 3.85
2525 3324 0.572125 GGTTCGTTCGTTCGTTCGTT 59.428 50.000 9.89 0.00 0.00 3.85
2526 3325 1.394712 GGTTCGTTCGTTCGTTCGTTC 60.395 52.381 9.89 6.29 0.00 3.95
2527 3326 0.493966 TTCGTTCGTTCGTTCGTTCG 59.506 50.000 9.89 7.92 0.00 3.95
2528 3327 0.588730 TCGTTCGTTCGTTCGTTCGT 60.589 50.000 14.44 0.00 33.45 3.85
2529 3328 0.224499 CGTTCGTTCGTTCGTTCGTT 59.776 50.000 9.89 0.00 0.00 3.85
2530 3329 1.628985 GTTCGTTCGTTCGTTCGTTG 58.371 50.000 9.89 0.00 0.00 4.10
2531 3330 0.571661 TTCGTTCGTTCGTTCGTTGG 59.428 50.000 9.89 0.00 0.00 3.77
2532 3331 1.199859 CGTTCGTTCGTTCGTTGGG 59.800 57.895 2.67 0.00 0.00 4.12
2533 3332 1.083209 GTTCGTTCGTTCGTTGGGC 60.083 57.895 2.67 0.00 0.00 5.36
2534 3333 2.587679 TTCGTTCGTTCGTTGGGCG 61.588 57.895 2.67 0.00 43.01 6.13
2535 3334 4.712873 CGTTCGTTCGTTGGGCGC 62.713 66.667 0.00 0.00 41.07 6.53
2536 3335 3.343421 GTTCGTTCGTTGGGCGCT 61.343 61.111 7.64 0.00 41.07 5.92
2537 3336 3.342627 TTCGTTCGTTGGGCGCTG 61.343 61.111 7.64 0.00 41.07 5.18
2538 3337 4.595538 TCGTTCGTTGGGCGCTGT 62.596 61.111 7.64 0.00 41.07 4.40
2539 3338 2.696409 TTCGTTCGTTGGGCGCTGTA 62.696 55.000 7.64 0.00 41.07 2.74
2540 3339 2.726691 CGTTCGTTGGGCGCTGTAG 61.727 63.158 7.64 0.00 41.07 2.74
2541 3340 1.666872 GTTCGTTGGGCGCTGTAGT 60.667 57.895 7.64 0.00 41.07 2.73
2571 3373 2.653742 CGTGAGATACGCACCACTG 58.346 57.895 0.00 0.00 46.92 3.66
2572 3374 1.413767 CGTGAGATACGCACCACTGC 61.414 60.000 0.00 0.00 46.92 4.40
2573 3375 0.108615 GTGAGATACGCACCACTGCT 60.109 55.000 0.00 0.00 41.77 4.24
2574 3376 0.608130 TGAGATACGCACCACTGCTT 59.392 50.000 0.00 0.00 41.77 3.91
2575 3377 1.002366 GAGATACGCACCACTGCTTG 58.998 55.000 0.00 0.00 41.77 4.01
2576 3378 0.608130 AGATACGCACCACTGCTTGA 59.392 50.000 0.00 0.00 41.77 3.02
2577 3379 1.002366 GATACGCACCACTGCTTGAG 58.998 55.000 0.00 0.00 41.77 3.02
2578 3380 0.608130 ATACGCACCACTGCTTGAGA 59.392 50.000 0.00 0.00 41.77 3.27
2579 3381 0.391228 TACGCACCACTGCTTGAGAA 59.609 50.000 0.00 0.00 41.77 2.87
2580 3382 0.463654 ACGCACCACTGCTTGAGAAA 60.464 50.000 0.00 0.00 41.77 2.52
2607 3421 1.066152 GGGAAATGGAAGCGCATTCTC 59.934 52.381 11.47 0.00 38.07 2.87
2767 4149 2.722487 CCGCCGGCAGTCTAGTAG 59.278 66.667 28.98 6.19 0.00 2.57
2768 4150 1.822613 CCGCCGGCAGTCTAGTAGA 60.823 63.158 28.98 0.00 0.00 2.59
2838 4231 2.828128 GCTAATCACAGCGGCAGGC 61.828 63.158 1.45 0.00 44.05 4.85
2870 4263 7.996758 TCTTAATCCCATTCTCCTTTCTAGT 57.003 36.000 0.00 0.00 0.00 2.57
2881 4277 3.302161 TCCTTTCTAGTAGCCGGCAATA 58.698 45.455 31.54 16.70 0.00 1.90
2884 4280 5.063880 CCTTTCTAGTAGCCGGCAATATTT 58.936 41.667 31.54 9.39 0.00 1.40
2919 4315 3.691342 CCTTCGGGTCGTCAGCCA 61.691 66.667 0.00 0.00 40.64 4.75
2937 4333 0.673644 CAGTTTACCCACTCCAGCGG 60.674 60.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.512926 ACGGCTCAACAAGTCATGAC 58.487 50.000 18.47 18.47 0.00 3.06
35 37 3.431912 TCTTGAACCGAAACATGATGTCG 59.568 43.478 0.00 5.08 34.58 4.35
44 46 3.003378 CCCTGAAACTCTTGAACCGAAAC 59.997 47.826 0.00 0.00 0.00 2.78
51 53 6.327626 CCTCTATATCCCCTGAAACTCTTGAA 59.672 42.308 0.00 0.00 0.00 2.69
58 60 9.508642 CTTTTTATCCTCTATATCCCCTGAAAC 57.491 37.037 0.00 0.00 0.00 2.78
64 66 6.012421 ACCAGCTTTTTATCCTCTATATCCCC 60.012 42.308 0.00 0.00 0.00 4.81
71 75 6.779049 TCCGTATACCAGCTTTTTATCCTCTA 59.221 38.462 0.00 0.00 0.00 2.43
72 76 5.601313 TCCGTATACCAGCTTTTTATCCTCT 59.399 40.000 0.00 0.00 0.00 3.69
132 139 8.629158 CAAGGGACGAAATATATTTCCATTCAA 58.371 33.333 25.51 0.00 42.34 2.69
148 193 1.133606 AGAAAAAGGGCAAGGGACGAA 60.134 47.619 0.00 0.00 0.00 3.85
150 195 0.598065 CAGAAAAAGGGCAAGGGACG 59.402 55.000 0.00 0.00 0.00 4.79
151 196 0.318441 GCAGAAAAAGGGCAAGGGAC 59.682 55.000 0.00 0.00 0.00 4.46
152 197 0.188342 AGCAGAAAAAGGGCAAGGGA 59.812 50.000 0.00 0.00 0.00 4.20
153 198 0.319405 CAGCAGAAAAAGGGCAAGGG 59.681 55.000 0.00 0.00 0.00 3.95
155 200 0.677842 AGCAGCAGAAAAAGGGCAAG 59.322 50.000 0.00 0.00 0.00 4.01
156 201 1.613437 GTAGCAGCAGAAAAAGGGCAA 59.387 47.619 0.00 0.00 0.00 4.52
158 203 1.247567 TGTAGCAGCAGAAAAAGGGC 58.752 50.000 0.00 0.00 0.00 5.19
159 204 2.229784 CCTTGTAGCAGCAGAAAAAGGG 59.770 50.000 0.00 0.00 31.12 3.95
160 205 2.887152 ACCTTGTAGCAGCAGAAAAAGG 59.113 45.455 9.00 9.00 38.89 3.11
162 207 3.699038 ACAACCTTGTAGCAGCAGAAAAA 59.301 39.130 0.00 0.00 40.16 1.94
173 223 7.554118 AGTGGATGATATTCAACAACCTTGTAG 59.446 37.037 0.00 0.00 41.31 2.74
177 227 7.633789 ACTAGTGGATGATATTCAACAACCTT 58.366 34.615 0.00 0.00 31.69 3.50
179 229 8.993121 CATACTAGTGGATGATATTCAACAACC 58.007 37.037 5.39 0.00 0.00 3.77
221 285 6.953101 TGAAAGAATACTATACCCACAAGCA 58.047 36.000 0.00 0.00 0.00 3.91
254 322 4.494091 TCAAAGAGGCCCTAAGATTCAG 57.506 45.455 0.00 0.00 0.00 3.02
258 326 5.659849 ATGAATCAAAGAGGCCCTAAGAT 57.340 39.130 0.00 1.08 0.00 2.40
267 369 5.945310 TCCCAATCCTATGAATCAAAGAGG 58.055 41.667 3.58 3.58 0.00 3.69
287 389 8.398743 TCCCAATCCTATATTTTTCCTATTCCC 58.601 37.037 0.00 0.00 0.00 3.97
288 390 9.997172 ATCCCAATCCTATATTTTTCCTATTCC 57.003 33.333 0.00 0.00 0.00 3.01
291 393 9.981460 GACATCCCAATCCTATATTTTTCCTAT 57.019 33.333 0.00 0.00 0.00 2.57
292 394 8.954729 TGACATCCCAATCCTATATTTTTCCTA 58.045 33.333 0.00 0.00 0.00 2.94
293 395 7.825709 TGACATCCCAATCCTATATTTTTCCT 58.174 34.615 0.00 0.00 0.00 3.36
295 397 8.031277 GCATGACATCCCAATCCTATATTTTTC 58.969 37.037 0.00 0.00 0.00 2.29
296 398 7.731688 AGCATGACATCCCAATCCTATATTTTT 59.268 33.333 0.00 0.00 0.00 1.94
297 399 7.243824 AGCATGACATCCCAATCCTATATTTT 58.756 34.615 0.00 0.00 0.00 1.82
298 400 6.797707 AGCATGACATCCCAATCCTATATTT 58.202 36.000 0.00 0.00 0.00 1.40
299 401 6.012245 TGAGCATGACATCCCAATCCTATATT 60.012 38.462 0.00 0.00 0.00 1.28
300 402 5.489997 TGAGCATGACATCCCAATCCTATAT 59.510 40.000 0.00 0.00 0.00 0.86
301 403 4.845796 TGAGCATGACATCCCAATCCTATA 59.154 41.667 0.00 0.00 0.00 1.31
303 405 3.047857 TGAGCATGACATCCCAATCCTA 58.952 45.455 0.00 0.00 0.00 2.94
304 406 1.848388 TGAGCATGACATCCCAATCCT 59.152 47.619 0.00 0.00 0.00 3.24
306 408 3.752665 AGATGAGCATGACATCCCAATC 58.247 45.455 21.33 6.67 0.00 2.67
307 409 3.878237 AGATGAGCATGACATCCCAAT 57.122 42.857 21.33 7.78 0.00 3.16
309 411 2.506644 TGAAGATGAGCATGACATCCCA 59.493 45.455 21.33 17.91 0.00 4.37
311 413 3.752222 GGATGAAGATGAGCATGACATCC 59.248 47.826 21.33 16.60 43.02 3.51
312 414 4.643463 AGGATGAAGATGAGCATGACATC 58.357 43.478 18.97 18.97 34.06 3.06
313 415 4.708576 AGGATGAAGATGAGCATGACAT 57.291 40.909 0.00 0.61 0.00 3.06
314 416 5.820404 ATAGGATGAAGATGAGCATGACA 57.180 39.130 0.00 0.00 0.00 3.58
315 417 6.154192 TCCTATAGGATGAAGATGAGCATGAC 59.846 42.308 18.00 0.00 39.78 3.06
316 418 6.259123 TCCTATAGGATGAAGATGAGCATGA 58.741 40.000 18.00 0.00 39.78 3.07
317 419 6.541934 TCCTATAGGATGAAGATGAGCATG 57.458 41.667 18.00 0.00 39.78 4.06
348 479 9.671279 AATTTTTCCATTCACTCAAAACTCTTT 57.329 25.926 0.00 0.00 0.00 2.52
349 480 9.317936 GAATTTTTCCATTCACTCAAAACTCTT 57.682 29.630 0.00 0.00 33.87 2.85
350 481 8.699130 AGAATTTTTCCATTCACTCAAAACTCT 58.301 29.630 0.00 0.00 35.85 3.24
351 482 8.877808 AGAATTTTTCCATTCACTCAAAACTC 57.122 30.769 0.00 0.00 35.85 3.01
352 483 9.101655 CAAGAATTTTTCCATTCACTCAAAACT 57.898 29.630 0.00 0.00 35.85 2.66
353 484 8.882736 ACAAGAATTTTTCCATTCACTCAAAAC 58.117 29.630 0.00 0.00 35.85 2.43
355 486 9.748708 CTACAAGAATTTTTCCATTCACTCAAA 57.251 29.630 0.00 0.00 35.85 2.69
356 487 8.359642 CCTACAAGAATTTTTCCATTCACTCAA 58.640 33.333 0.00 0.00 35.85 3.02
357 488 7.723616 TCCTACAAGAATTTTTCCATTCACTCA 59.276 33.333 0.00 0.00 35.85 3.41
358 489 8.110860 TCCTACAAGAATTTTTCCATTCACTC 57.889 34.615 0.00 0.00 35.85 3.51
359 490 8.655935 ATCCTACAAGAATTTTTCCATTCACT 57.344 30.769 0.00 0.00 35.85 3.41
360 491 9.358872 GAATCCTACAAGAATTTTTCCATTCAC 57.641 33.333 0.00 0.00 35.85 3.18
361 492 9.087871 TGAATCCTACAAGAATTTTTCCATTCA 57.912 29.630 0.00 0.00 35.85 2.57
362 493 9.927668 TTGAATCCTACAAGAATTTTTCCATTC 57.072 29.630 0.00 0.00 33.87 2.67
365 496 8.531146 GGATTGAATCCTACAAGAATTTTTCCA 58.469 33.333 16.79 0.00 46.19 3.53
366 497 8.932945 GGATTGAATCCTACAAGAATTTTTCC 57.067 34.615 16.79 0.00 46.19 3.13
385 654 5.787953 TGCTGTTTGATTCAAAGGATTGA 57.212 34.783 12.02 0.00 43.70 2.57
387 656 5.916318 TGTTGCTGTTTGATTCAAAGGATT 58.084 33.333 12.02 0.00 33.82 3.01
391 660 6.680810 TCCTATGTTGCTGTTTGATTCAAAG 58.319 36.000 12.02 3.14 33.82 2.77
393 662 6.647334 TTCCTATGTTGCTGTTTGATTCAA 57.353 33.333 0.00 0.00 0.00 2.69
468 737 9.300681 TGTGTTTCTTGAGAAATATCCTTTGAT 57.699 29.630 9.20 0.00 44.69 2.57
469 738 8.690203 TGTGTTTCTTGAGAAATATCCTTTGA 57.310 30.769 9.20 0.00 44.69 2.69
470 739 9.748708 TTTGTGTTTCTTGAGAAATATCCTTTG 57.251 29.630 9.20 0.00 44.69 2.77
472 741 9.918630 CATTTGTGTTTCTTGAGAAATATCCTT 57.081 29.630 9.20 0.00 44.69 3.36
473 742 8.031277 GCATTTGTGTTTCTTGAGAAATATCCT 58.969 33.333 9.20 0.00 44.69 3.24
474 743 7.814107 TGCATTTGTGTTTCTTGAGAAATATCC 59.186 33.333 9.20 0.00 44.69 2.59
475 744 8.746922 TGCATTTGTGTTTCTTGAGAAATATC 57.253 30.769 9.20 4.67 44.69 1.63
476 745 9.715121 ATTGCATTTGTGTTTCTTGAGAAATAT 57.285 25.926 9.20 0.00 44.69 1.28
477 746 9.545105 AATTGCATTTGTGTTTCTTGAGAAATA 57.455 25.926 9.20 4.37 44.69 1.40
478 747 8.441312 AATTGCATTTGTGTTTCTTGAGAAAT 57.559 26.923 9.20 0.00 44.69 2.17
479 748 7.846644 AATTGCATTTGTGTTTCTTGAGAAA 57.153 28.000 2.16 2.16 41.29 2.52
480 749 7.686519 CAAATTGCATTTGTGTTTCTTGAGAA 58.313 30.769 11.27 0.00 43.47 2.87
481 750 7.236674 CAAATTGCATTTGTGTTTCTTGAGA 57.763 32.000 11.27 0.00 43.47 3.27
505 774 2.019984 GATCCAGAACCAACCATGAGC 58.980 52.381 0.00 0.00 0.00 4.26
509 778 3.053619 GGTAAGGATCCAGAACCAACCAT 60.054 47.826 15.82 0.00 35.75 3.55
537 806 3.973206 TCCAGAAGCGATAGAAACCAA 57.027 42.857 0.00 0.00 39.76 3.67
544 814 1.482278 GAGCGTTCCAGAAGCGATAG 58.518 55.000 0.00 0.00 35.78 2.08
561 831 1.738099 CGAACGGGTCTTGCTGGAG 60.738 63.158 0.00 0.00 0.00 3.86
578 848 1.267806 ACATCTTGTTTTCTGGCAGCG 59.732 47.619 10.34 0.00 0.00 5.18
589 866 2.362077 GGCAAAGACCACACATCTTGTT 59.638 45.455 0.00 0.00 35.67 2.83
596 873 1.827789 GGCTGGCAAAGACCACACA 60.828 57.895 0.00 0.00 35.33 3.72
597 874 1.391157 TTGGCTGGCAAAGACCACAC 61.391 55.000 14.75 0.00 35.33 3.82
605 882 2.916703 ACCGCATTGGCTGGCAAA 60.917 55.556 20.82 4.73 43.94 3.68
611 888 2.985282 CCACACACCGCATTGGCT 60.985 61.111 0.00 0.00 43.94 4.75
619 896 3.345808 CAAGGTCGCCACACACCG 61.346 66.667 0.00 0.00 37.79 4.94
621 899 2.978010 CCCAAGGTCGCCACACAC 60.978 66.667 0.00 0.00 0.00 3.82
632 910 0.704076 TCTGGAACAATCCCCCAAGG 59.296 55.000 0.00 0.00 45.95 3.61
633 911 2.381911 CATCTGGAACAATCCCCCAAG 58.618 52.381 0.00 0.00 45.95 3.61
635 913 0.033208 GCATCTGGAACAATCCCCCA 60.033 55.000 0.00 0.00 45.95 4.96
636 914 1.103398 CGCATCTGGAACAATCCCCC 61.103 60.000 0.00 0.00 45.95 5.40
660 952 3.185594 GTGCTACAACTGTACGAATTGCA 59.814 43.478 0.00 0.00 0.00 4.08
661 953 3.424433 GGTGCTACAACTGTACGAATTGC 60.424 47.826 0.00 0.00 0.00 3.56
662 954 3.181534 CGGTGCTACAACTGTACGAATTG 60.182 47.826 0.00 2.88 0.00 2.32
682 974 3.431725 GCGGAAAGGGACAAGCGG 61.432 66.667 0.00 0.00 0.00 5.52
683 975 2.358737 AGCGGAAAGGGACAAGCG 60.359 61.111 0.00 0.00 0.00 4.68
684 976 2.041115 GGAGCGGAAAGGGACAAGC 61.041 63.158 0.00 0.00 0.00 4.01
690 982 1.586541 GCAAAAGGAGCGGAAAGGG 59.413 57.895 0.00 0.00 0.00 3.95
692 984 1.740025 CTAGGCAAAAGGAGCGGAAAG 59.260 52.381 0.00 0.00 0.00 2.62
694 986 0.035439 CCTAGGCAAAAGGAGCGGAA 60.035 55.000 0.00 0.00 36.08 4.30
697 989 0.250513 AGTCCTAGGCAAAAGGAGCG 59.749 55.000 2.96 0.00 43.81 5.03
698 990 1.740718 CGAGTCCTAGGCAAAAGGAGC 60.741 57.143 2.96 0.13 43.81 4.70
699 991 1.550976 ACGAGTCCTAGGCAAAAGGAG 59.449 52.381 2.96 0.00 43.81 3.69
700 992 1.640917 ACGAGTCCTAGGCAAAAGGA 58.359 50.000 2.96 0.00 40.92 3.36
701 993 2.738964 GCTACGAGTCCTAGGCAAAAGG 60.739 54.545 2.96 0.00 35.26 3.11
702 994 2.166664 AGCTACGAGTCCTAGGCAAAAG 59.833 50.000 2.96 0.00 0.00 2.27
703 995 2.176889 AGCTACGAGTCCTAGGCAAAA 58.823 47.619 2.96 0.00 0.00 2.44
707 999 3.380954 AGTTTTAGCTACGAGTCCTAGGC 59.619 47.826 2.96 0.00 0.00 3.93
708 1000 4.734108 GCAGTTTTAGCTACGAGTCCTAGG 60.734 50.000 0.82 0.82 0.00 3.02
709 1001 4.142447 TGCAGTTTTAGCTACGAGTCCTAG 60.142 45.833 0.00 0.00 0.00 3.02
711 1003 2.561419 TGCAGTTTTAGCTACGAGTCCT 59.439 45.455 0.00 0.00 0.00 3.85
712 1004 2.955614 TGCAGTTTTAGCTACGAGTCC 58.044 47.619 0.00 0.00 0.00 3.85
713 1005 4.425520 AGATGCAGTTTTAGCTACGAGTC 58.574 43.478 0.00 0.00 0.00 3.36
714 1006 4.425520 GAGATGCAGTTTTAGCTACGAGT 58.574 43.478 0.00 0.00 0.00 4.18
715 1007 3.483922 CGAGATGCAGTTTTAGCTACGAG 59.516 47.826 0.00 0.00 0.00 4.18
716 1008 3.435566 CGAGATGCAGTTTTAGCTACGA 58.564 45.455 0.00 0.00 0.00 3.43
717 1009 2.034507 GCGAGATGCAGTTTTAGCTACG 60.035 50.000 0.00 0.00 45.45 3.51
730 1022 5.914085 ACAGATAACAAATAGCGAGATGC 57.086 39.130 0.00 0.00 46.98 3.91
732 1024 6.591834 GCCATACAGATAACAAATAGCGAGAT 59.408 38.462 0.00 0.00 0.00 2.75
733 1025 5.926542 GCCATACAGATAACAAATAGCGAGA 59.073 40.000 0.00 0.00 0.00 4.04
734 1026 5.928839 AGCCATACAGATAACAAATAGCGAG 59.071 40.000 0.00 0.00 0.00 5.03
735 1027 5.853936 AGCCATACAGATAACAAATAGCGA 58.146 37.500 0.00 0.00 0.00 4.93
736 1028 6.545504 AAGCCATACAGATAACAAATAGCG 57.454 37.500 0.00 0.00 0.00 4.26
737 1029 7.878127 TCCTAAGCCATACAGATAACAAATAGC 59.122 37.037 0.00 0.00 0.00 2.97
738 1030 9.429359 CTCCTAAGCCATACAGATAACAAATAG 57.571 37.037 0.00 0.00 0.00 1.73
746 1038 5.313506 TCCTCTCTCCTAAGCCATACAGATA 59.686 44.000 0.00 0.00 0.00 1.98
747 1039 4.107149 TCCTCTCTCCTAAGCCATACAGAT 59.893 45.833 0.00 0.00 0.00 2.90
757 1049 5.423610 TGGTGAATTCTTCCTCTCTCCTAAG 59.576 44.000 16.76 0.00 0.00 2.18
759 1051 4.712337 GTGGTGAATTCTTCCTCTCTCCTA 59.288 45.833 16.76 0.00 0.00 2.94
779 1071 0.519519 TTGCGGTTTGCTATTCGTGG 59.480 50.000 0.00 0.00 46.63 4.94
793 1085 1.665735 CCAGGAATTTCGTGTTTGCGG 60.666 52.381 15.70 0.00 30.87 5.69
794 1086 1.685302 CCAGGAATTTCGTGTTTGCG 58.315 50.000 15.70 0.00 30.87 4.85
795 1087 1.269517 TGCCAGGAATTTCGTGTTTGC 60.270 47.619 15.70 12.72 30.87 3.68
796 1088 2.791383 TGCCAGGAATTTCGTGTTTG 57.209 45.000 15.70 4.51 30.87 2.93
801 1098 2.612721 GCCAAAATGCCAGGAATTTCGT 60.613 45.455 5.79 0.00 0.00 3.85
813 1110 2.874086 AGCAAAGAAAGTGCCAAAATGC 59.126 40.909 0.00 0.00 43.27 3.56
834 1132 5.437060 GTGCTAGGATTTATTCAGGGTTCA 58.563 41.667 0.00 0.00 0.00 3.18
851 1152 1.892468 GTGAGTAACGACGGTGCTAG 58.108 55.000 2.63 0.00 0.00 3.42
853 1154 4.959446 GTGAGTAACGACGGTGCT 57.041 55.556 2.13 2.13 0.00 4.40
864 1166 2.257371 GAGCGTGTGCCGTGAGTA 59.743 61.111 0.00 0.00 44.31 2.59
872 1174 3.628646 AAGGATGGGGAGCGTGTGC 62.629 63.158 0.00 0.00 43.24 4.57
876 1178 2.044946 GCAAAGGATGGGGAGCGT 60.045 61.111 0.00 0.00 0.00 5.07
880 1182 0.909610 AGACGAGCAAAGGATGGGGA 60.910 55.000 0.00 0.00 0.00 4.81
885 1187 1.065854 CAAGGGAGACGAGCAAAGGAT 60.066 52.381 0.00 0.00 0.00 3.24
892 1194 2.765250 TTCGTGCAAGGGAGACGAGC 62.765 60.000 0.00 0.00 42.59 5.03
911 1244 2.499685 GTGCGTTAGATCGGGGCT 59.500 61.111 0.00 0.00 0.00 5.19
912 1245 2.960129 CGTGCGTTAGATCGGGGC 60.960 66.667 0.00 0.00 0.00 5.80
913 1246 2.960129 GCGTGCGTTAGATCGGGG 60.960 66.667 0.00 0.00 0.00 5.73
914 1247 3.320078 CGCGTGCGTTAGATCGGG 61.320 66.667 6.00 0.00 34.35 5.14
915 1248 3.320078 CCGCGTGCGTTAGATCGG 61.320 66.667 13.70 0.60 37.81 4.18
916 1249 3.972803 GCCGCGTGCGTTAGATCG 61.973 66.667 13.70 0.00 37.81 3.69
930 1263 4.012895 GTGTTCACCACGCAGCCG 62.013 66.667 0.00 0.00 35.77 5.52
931 1264 1.999071 TTTGTGTTCACCACGCAGCC 61.999 55.000 0.37 0.00 46.66 4.85
932 1265 0.592247 CTTTGTGTTCACCACGCAGC 60.592 55.000 0.37 0.00 46.66 5.25
933 1266 0.592247 GCTTTGTGTTCACCACGCAG 60.592 55.000 0.37 0.00 46.66 5.18
937 1270 1.739667 GGGGCTTTGTGTTCACCAC 59.260 57.895 0.37 0.00 44.78 4.16
938 1271 1.826054 CGGGGCTTTGTGTTCACCA 60.826 57.895 0.37 0.00 0.00 4.17
939 1272 2.561037 CCGGGGCTTTGTGTTCACC 61.561 63.158 0.00 0.00 0.00 4.02
940 1273 1.792118 GACCGGGGCTTTGTGTTCAC 61.792 60.000 6.32 0.00 0.00 3.18
941 1274 1.527380 GACCGGGGCTTTGTGTTCA 60.527 57.895 6.32 0.00 0.00 3.18
942 1275 1.228154 AGACCGGGGCTTTGTGTTC 60.228 57.895 6.32 0.00 0.00 3.18
943 1276 1.528309 CAGACCGGGGCTTTGTGTT 60.528 57.895 6.32 0.00 0.00 3.32
944 1277 2.113139 CAGACCGGGGCTTTGTGT 59.887 61.111 6.32 0.00 0.00 3.72
945 1278 1.966451 GTCAGACCGGGGCTTTGTG 60.966 63.158 6.32 0.00 0.00 3.33
946 1279 2.430367 GTCAGACCGGGGCTTTGT 59.570 61.111 6.32 0.00 0.00 2.83
947 1280 1.966451 GTGTCAGACCGGGGCTTTG 60.966 63.158 6.32 0.00 0.00 2.77
948 1281 2.430367 GTGTCAGACCGGGGCTTT 59.570 61.111 6.32 0.00 0.00 3.51
949 1282 4.003788 CGTGTCAGACCGGGGCTT 62.004 66.667 6.32 0.00 0.00 4.35
950 1283 4.988716 TCGTGTCAGACCGGGGCT 62.989 66.667 6.32 0.00 0.00 5.19
951 1284 2.999739 TTTTCGTGTCAGACCGGGGC 63.000 60.000 6.32 0.00 0.00 5.80
952 1285 0.321298 ATTTTCGTGTCAGACCGGGG 60.321 55.000 6.32 0.00 0.00 5.73
953 1286 1.076332 GATTTTCGTGTCAGACCGGG 58.924 55.000 6.32 0.00 0.00 5.73
954 1287 1.993370 GAGATTTTCGTGTCAGACCGG 59.007 52.381 0.00 0.00 0.00 5.28
955 1288 1.649171 CGAGATTTTCGTGTCAGACCG 59.351 52.381 0.00 1.60 44.27 4.79
980 1313 1.878522 GGGACGTCAGTATGCTGCG 60.879 63.158 18.91 19.82 42.29 5.18
983 1316 0.465705 CATGGGGACGTCAGTATGCT 59.534 55.000 18.91 0.00 34.76 3.79
984 1317 0.532862 CCATGGGGACGTCAGTATGC 60.533 60.000 18.91 0.00 35.59 3.14
990 1331 3.080765 ATCGCCATGGGGACGTCA 61.081 61.111 31.75 11.56 39.84 4.35
991 1332 2.280186 GATCGCCATGGGGACGTC 60.280 66.667 31.75 22.47 39.84 4.34
996 1337 2.593725 CTGCTGATCGCCATGGGG 60.594 66.667 22.46 22.46 38.05 4.96
997 1338 3.285215 GCTGCTGATCGCCATGGG 61.285 66.667 15.13 3.69 38.05 4.00
1091 1435 0.459934 CTTCCTTGGCTGAGCTCTCG 60.460 60.000 16.19 7.25 0.00 4.04
1104 1448 2.439156 GCTGCCATCGCCTTCCTT 60.439 61.111 0.00 0.00 0.00 3.36
1289 1649 6.362686 ACACAAACGCAATATAGCAATATCG 58.637 36.000 0.00 0.00 0.00 2.92
1297 1657 3.778718 GCAACGACACAAACGCAATATAG 59.221 43.478 0.00 0.00 0.00 1.31
1301 1661 0.099613 TGCAACGACACAAACGCAAT 59.900 45.000 0.00 0.00 0.00 3.56
1302 1662 0.099613 ATGCAACGACACAAACGCAA 59.900 45.000 0.00 0.00 32.38 4.85
1303 1663 0.590984 CATGCAACGACACAAACGCA 60.591 50.000 0.00 0.00 0.00 5.24
1305 1665 0.590984 TGCATGCAACGACACAAACG 60.591 50.000 20.30 0.00 0.00 3.60
1306 1666 1.122849 CTGCATGCAACGACACAAAC 58.877 50.000 22.88 0.00 0.00 2.93
1307 1667 0.030504 CCTGCATGCAACGACACAAA 59.969 50.000 22.88 0.00 0.00 2.83
1313 1673 1.078918 CTCCTCCTGCATGCAACGA 60.079 57.895 22.88 18.06 0.00 3.85
1441 1802 3.000684 TCGATCGAGAAGGAGGAGAAA 57.999 47.619 15.15 0.00 0.00 2.52
1446 1807 0.885196 GGGATCGATCGAGAAGGAGG 59.115 60.000 23.84 0.00 0.00 4.30
1452 1813 0.395686 ACTACCGGGATCGATCGAGA 59.604 55.000 23.84 0.68 39.00 4.04
1462 1823 1.076024 ACCACTAGTCAACTACCGGGA 59.924 52.381 6.32 0.00 0.00 5.14
1465 1826 2.165167 TCCACCACTAGTCAACTACCG 58.835 52.381 0.00 0.00 0.00 4.02
1472 1833 3.843619 TCCATTCATTCCACCACTAGTCA 59.156 43.478 0.00 0.00 0.00 3.41
1474 1835 3.054361 GGTCCATTCATTCCACCACTAGT 60.054 47.826 0.00 0.00 0.00 2.57
1475 1836 3.545703 GGTCCATTCATTCCACCACTAG 58.454 50.000 0.00 0.00 0.00 2.57
1476 1837 2.093181 CGGTCCATTCATTCCACCACTA 60.093 50.000 0.00 0.00 0.00 2.74
1480 1841 1.949525 CATCGGTCCATTCATTCCACC 59.050 52.381 0.00 0.00 0.00 4.61
1481 1842 2.917933 TCATCGGTCCATTCATTCCAC 58.082 47.619 0.00 0.00 0.00 4.02
1485 1846 3.003394 TGCTTCATCGGTCCATTCATT 57.997 42.857 0.00 0.00 0.00 2.57
1486 1847 2.715749 TGCTTCATCGGTCCATTCAT 57.284 45.000 0.00 0.00 0.00 2.57
1487 1848 2.488204 TTGCTTCATCGGTCCATTCA 57.512 45.000 0.00 0.00 0.00 2.57
1489 1850 2.301346 GGATTGCTTCATCGGTCCATT 58.699 47.619 0.00 0.00 0.00 3.16
1490 1851 1.811558 CGGATTGCTTCATCGGTCCAT 60.812 52.381 0.00 0.00 0.00 3.41
1491 1852 0.461870 CGGATTGCTTCATCGGTCCA 60.462 55.000 0.00 0.00 0.00 4.02
1492 1853 0.462047 ACGGATTGCTTCATCGGTCC 60.462 55.000 0.00 0.00 0.00 4.46
1493 1854 0.931005 GACGGATTGCTTCATCGGTC 59.069 55.000 12.58 12.58 39.01 4.79
1494 1855 0.537188 AGACGGATTGCTTCATCGGT 59.463 50.000 4.69 4.69 33.87 4.69
1495 1856 1.656652 AAGACGGATTGCTTCATCGG 58.343 50.000 0.00 0.00 0.00 4.18
1497 1858 3.274288 AGGAAAGACGGATTGCTTCATC 58.726 45.455 0.00 0.00 0.00 2.92
1498 1859 3.356529 AGGAAAGACGGATTGCTTCAT 57.643 42.857 0.00 0.00 0.00 2.57
1500 1861 3.374367 GGTAAGGAAAGACGGATTGCTTC 59.626 47.826 7.03 1.84 38.96 3.86
1501 1862 3.244770 TGGTAAGGAAAGACGGATTGCTT 60.245 43.478 8.42 8.42 40.78 3.91
1502 1863 2.304761 TGGTAAGGAAAGACGGATTGCT 59.695 45.455 0.00 0.00 0.00 3.91
1503 1864 2.418976 GTGGTAAGGAAAGACGGATTGC 59.581 50.000 0.00 0.00 0.00 3.56
1505 1866 2.354403 CGGTGGTAAGGAAAGACGGATT 60.354 50.000 0.00 0.00 0.00 3.01
1506 1867 1.206371 CGGTGGTAAGGAAAGACGGAT 59.794 52.381 0.00 0.00 0.00 4.18
1507 1868 0.604578 CGGTGGTAAGGAAAGACGGA 59.395 55.000 0.00 0.00 0.00 4.69
1508 1869 0.390735 CCGGTGGTAAGGAAAGACGG 60.391 60.000 0.00 0.00 0.00 4.79
1512 1873 0.399075 ACACCCGGTGGTAAGGAAAG 59.601 55.000 21.77 0.00 45.57 2.62
1523 1884 4.602259 CGCACAGACACACCCGGT 62.602 66.667 0.00 0.00 0.00 5.28
1527 1888 3.014036 CACACGCACAGACACACC 58.986 61.111 0.00 0.00 0.00 4.16
1534 1895 1.277739 CTGAACAGCACACGCACAG 59.722 57.895 0.00 0.00 42.27 3.66
1549 1910 2.338620 CAACGCCGTCTCCACTGA 59.661 61.111 0.00 0.00 0.00 3.41
1795 2290 4.831674 TCCCCAAAAAGCTAGTACTACC 57.168 45.455 0.00 0.00 0.00 3.18
1796 2291 8.975663 AAATATCCCCAAAAAGCTAGTACTAC 57.024 34.615 0.00 0.00 0.00 2.73
2021 2555 8.915057 ATTACATAAATGCTCAGAGCTTACAT 57.085 30.769 23.15 10.54 42.97 2.29
2089 2690 3.334583 AAAATGTGCTCGGAGCTTCTA 57.665 42.857 28.42 13.56 42.97 2.10
2141 2918 2.684881 GGACAGAACCATGCATTTCGAT 59.315 45.455 0.00 0.00 0.00 3.59
2155 2932 1.367471 CTGGCGTCACTGGACAGAA 59.633 57.895 6.29 0.00 44.54 3.02
2168 2945 4.720902 TGGGATGTGTGGCTGGCG 62.721 66.667 0.00 0.00 0.00 5.69
2169 2946 2.043652 ATGGGATGTGTGGCTGGC 60.044 61.111 0.00 0.00 0.00 4.85
2186 2966 2.488204 TCACCCAGAAAATCGCATGA 57.512 45.000 0.00 0.00 0.00 3.07
2205 2985 4.004196 AGAGCGTTTAAAGCACTACCTT 57.996 40.909 5.61 0.00 33.95 3.50
2206 2986 3.679824 AGAGCGTTTAAAGCACTACCT 57.320 42.857 5.61 0.00 33.95 3.08
2207 2987 6.755607 ACTATAAGAGCGTTTAAAGCACTACC 59.244 38.462 5.61 0.00 34.59 3.18
2210 2990 8.943909 AATACTATAAGAGCGTTTAAAGCACT 57.056 30.769 5.61 1.18 37.13 4.40
2211 2991 9.983804 AAAATACTATAAGAGCGTTTAAAGCAC 57.016 29.630 5.61 0.00 37.01 4.40
2235 3015 9.362151 ACTTAATGTTACTCCCTTCATGAAAAA 57.638 29.630 9.88 0.00 0.00 1.94
2236 3016 8.934023 ACTTAATGTTACTCCCTTCATGAAAA 57.066 30.769 9.88 0.00 0.00 2.29
2238 3018 9.667107 CTTACTTAATGTTACTCCCTTCATGAA 57.333 33.333 8.12 8.12 0.00 2.57
2239 3019 8.822805 ACTTACTTAATGTTACTCCCTTCATGA 58.177 33.333 0.00 0.00 0.00 3.07
2240 3020 8.883731 CACTTACTTAATGTTACTCCCTTCATG 58.116 37.037 0.00 0.00 0.00 3.07
2241 3021 8.822805 TCACTTACTTAATGTTACTCCCTTCAT 58.177 33.333 0.00 0.00 0.00 2.57
2242 3022 8.197592 TCACTTACTTAATGTTACTCCCTTCA 57.802 34.615 0.00 0.00 0.00 3.02
2243 3023 9.152595 CTTCACTTACTTAATGTTACTCCCTTC 57.847 37.037 0.00 0.00 0.00 3.46
2244 3024 7.606839 GCTTCACTTACTTAATGTTACTCCCTT 59.393 37.037 0.00 0.00 0.00 3.95
2245 3025 7.104290 GCTTCACTTACTTAATGTTACTCCCT 58.896 38.462 0.00 0.00 0.00 4.20
2246 3026 6.315642 GGCTTCACTTACTTAATGTTACTCCC 59.684 42.308 0.00 0.00 0.00 4.30
2247 3027 6.877322 TGGCTTCACTTACTTAATGTTACTCC 59.123 38.462 0.00 0.00 0.00 3.85
2248 3028 7.900782 TGGCTTCACTTACTTAATGTTACTC 57.099 36.000 0.00 0.00 0.00 2.59
2249 3029 8.685838 TTTGGCTTCACTTACTTAATGTTACT 57.314 30.769 0.00 0.00 0.00 2.24
2257 3037 7.450074 TGATTCTCTTTGGCTTCACTTACTTA 58.550 34.615 0.00 0.00 0.00 2.24
2263 3043 4.285517 TCTCTGATTCTCTTTGGCTTCACT 59.714 41.667 0.00 0.00 0.00 3.41
2279 3059 1.671261 GCGCACAGTCACTTCTCTGAT 60.671 52.381 0.30 0.00 35.84 2.90
2293 3073 2.327343 GCAGGATTCTGTGCGCACA 61.327 57.895 38.28 38.28 42.78 4.57
2300 3080 1.302285 CTGGCTGGCAGGATTCTGT 59.698 57.895 22.32 0.00 42.78 3.41
2303 3083 2.832201 GGCTGGCTGGCAGGATTC 60.832 66.667 29.23 14.38 41.37 2.52
2315 3095 2.034879 ATTTCGACGTGCTGGCTGG 61.035 57.895 0.00 0.00 0.00 4.85
2316 3096 1.133253 CATTTCGACGTGCTGGCTG 59.867 57.895 0.00 0.00 0.00 4.85
2317 3097 2.034879 CCATTTCGACGTGCTGGCT 61.035 57.895 0.00 0.00 0.00 4.75
2318 3098 2.480555 CCATTTCGACGTGCTGGC 59.519 61.111 0.00 0.00 0.00 4.85
2319 3099 3.039202 GCCCATTTCGACGTGCTGG 62.039 63.158 0.00 0.18 0.00 4.85
2320 3100 2.034879 AGCCCATTTCGACGTGCTG 61.035 57.895 0.00 0.00 0.00 4.41
2321 3101 2.034879 CAGCCCATTTCGACGTGCT 61.035 57.895 0.00 0.00 0.00 4.40
2323 3103 1.970917 GCTCAGCCCATTTCGACGTG 61.971 60.000 0.00 0.00 0.00 4.49
2324 3104 1.741770 GCTCAGCCCATTTCGACGT 60.742 57.895 0.00 0.00 0.00 4.34
2325 3105 0.179111 TAGCTCAGCCCATTTCGACG 60.179 55.000 0.00 0.00 0.00 5.12
2326 3106 1.576356 CTAGCTCAGCCCATTTCGAC 58.424 55.000 0.00 0.00 0.00 4.20
2327 3107 0.179073 GCTAGCTCAGCCCATTTCGA 60.179 55.000 7.70 0.00 45.23 3.71
2337 3128 3.917380 GCAAGTATGATACGCTAGCTCAG 59.083 47.826 13.93 0.00 0.00 3.35
2340 3131 4.527509 ATGCAAGTATGATACGCTAGCT 57.472 40.909 13.93 2.46 0.00 3.32
2343 3134 6.512297 TCAAGAATGCAAGTATGATACGCTA 58.488 36.000 0.00 0.00 0.00 4.26
2346 3137 6.699204 AGACTCAAGAATGCAAGTATGATACG 59.301 38.462 0.00 0.00 0.00 3.06
2347 3138 8.333908 CAAGACTCAAGAATGCAAGTATGATAC 58.666 37.037 0.00 0.00 0.00 2.24
2348 3139 7.496920 CCAAGACTCAAGAATGCAAGTATGATA 59.503 37.037 0.00 0.00 0.00 2.15
2349 3140 6.318144 CCAAGACTCAAGAATGCAAGTATGAT 59.682 38.462 0.00 0.00 0.00 2.45
2356 3147 2.886523 CACCCAAGACTCAAGAATGCAA 59.113 45.455 0.00 0.00 0.00 4.08
2358 3149 1.200948 GCACCCAAGACTCAAGAATGC 59.799 52.381 0.00 0.00 0.00 3.56
2367 3158 0.620556 CATACCAGGCACCCAAGACT 59.379 55.000 0.00 0.00 0.00 3.24
2370 3161 0.744414 CGACATACCAGGCACCCAAG 60.744 60.000 0.00 0.00 0.00 3.61
2371 3162 1.195442 TCGACATACCAGGCACCCAA 61.195 55.000 0.00 0.00 0.00 4.12
2372 3163 1.610967 TCGACATACCAGGCACCCA 60.611 57.895 0.00 0.00 0.00 4.51
2373 3164 1.153429 GTCGACATACCAGGCACCC 60.153 63.158 11.55 0.00 0.00 4.61
2377 3168 0.801067 GACGTGTCGACATACCAGGC 60.801 60.000 23.12 9.57 0.00 4.85
2378 3169 3.324170 GACGTGTCGACATACCAGG 57.676 57.895 23.12 6.32 0.00 4.45
2401 3196 2.183679 CAAAGCTCTGGTCCTAGTCCT 58.816 52.381 0.00 0.00 0.00 3.85
2438 3233 2.637715 GAATGATGTCGCCTGCGTGC 62.638 60.000 11.68 6.66 40.74 5.34
2439 3234 1.349627 GAATGATGTCGCCTGCGTG 59.650 57.895 11.68 0.00 40.74 5.34
2506 3305 0.572125 AACGAACGAACGAACGAACC 59.428 50.000 18.31 1.78 37.03 3.62
2527 3326 2.668212 TGCACTACAGCGCCCAAC 60.668 61.111 2.29 0.00 37.31 3.77
2528 3327 2.358615 CTGCACTACAGCGCCCAA 60.359 61.111 2.29 0.00 40.19 4.12
2529 3328 3.300934 CTCTGCACTACAGCGCCCA 62.301 63.158 2.29 0.00 46.76 5.36
2530 3329 2.510238 CTCTGCACTACAGCGCCC 60.510 66.667 2.29 0.00 46.76 6.13
2533 3332 0.389037 TTGAGCTCTGCACTACAGCG 60.389 55.000 16.19 0.00 46.76 5.18
2534 3333 1.074752 GTTGAGCTCTGCACTACAGC 58.925 55.000 16.19 0.00 46.76 4.40
2536 3335 0.673985 ACGTTGAGCTCTGCACTACA 59.326 50.000 16.19 0.00 0.00 2.74
2537 3336 1.063806 CACGTTGAGCTCTGCACTAC 58.936 55.000 16.19 2.91 0.00 2.73
2538 3337 0.958822 TCACGTTGAGCTCTGCACTA 59.041 50.000 16.19 0.00 0.00 2.74
2539 3338 0.319383 CTCACGTTGAGCTCTGCACT 60.319 55.000 16.19 0.00 37.72 4.40
2540 3339 0.319040 TCTCACGTTGAGCTCTGCAC 60.319 55.000 16.19 8.14 43.95 4.57
2541 3340 0.605083 ATCTCACGTTGAGCTCTGCA 59.395 50.000 16.19 0.00 43.95 4.41
2586 3388 0.103026 GAATGCGCTTCCATTTCCCC 59.897 55.000 9.73 0.00 35.67 4.81
2618 3432 0.179200 GCGCCATGTTTGGTTCGTAG 60.179 55.000 0.00 0.00 45.57 3.51
2619 3433 0.604243 AGCGCCATGTTTGGTTCGTA 60.604 50.000 2.29 0.00 45.57 3.43
2620 3434 1.452145 AAGCGCCATGTTTGGTTCGT 61.452 50.000 2.29 0.00 45.57 3.85
2621 3435 0.318614 AAAGCGCCATGTTTGGTTCG 60.319 50.000 2.29 0.00 45.57 3.95
2761 4143 5.798564 GCGGTGGCACTACTAGTCTACTAG 61.799 54.167 18.45 14.26 44.07 2.57
2762 4144 3.801698 CGGTGGCACTACTAGTCTACTA 58.198 50.000 18.45 0.00 0.00 1.82
2763 4145 2.641305 CGGTGGCACTACTAGTCTACT 58.359 52.381 18.45 0.00 0.00 2.57
2764 4146 1.065251 GCGGTGGCACTACTAGTCTAC 59.935 57.143 18.45 0.00 39.62 2.59
2765 4147 1.386533 GCGGTGGCACTACTAGTCTA 58.613 55.000 18.45 0.00 39.62 2.59
2766 4148 1.321074 GGCGGTGGCACTACTAGTCT 61.321 60.000 18.45 0.00 42.47 3.24
2767 4149 1.141234 GGCGGTGGCACTACTAGTC 59.859 63.158 18.45 2.24 42.47 2.59
2768 4150 2.356780 GGGCGGTGGCACTACTAGT 61.357 63.158 18.45 0.00 40.32 2.57
2838 4231 5.009410 GGAGAATGGGATTAAGAACATGCTG 59.991 44.000 0.00 0.00 29.46 4.41
2839 4232 5.103771 AGGAGAATGGGATTAAGAACATGCT 60.104 40.000 0.00 0.00 31.96 3.79
2840 4233 5.136105 AGGAGAATGGGATTAAGAACATGC 58.864 41.667 0.00 0.00 0.00 4.06
2841 4234 7.559170 AGAAAGGAGAATGGGATTAAGAACATG 59.441 37.037 0.00 0.00 0.00 3.21
2842 4235 7.646884 AGAAAGGAGAATGGGATTAAGAACAT 58.353 34.615 0.00 0.00 0.00 2.71
2843 4236 7.032598 AGAAAGGAGAATGGGATTAAGAACA 57.967 36.000 0.00 0.00 0.00 3.18
2844 4237 8.268605 ACTAGAAAGGAGAATGGGATTAAGAAC 58.731 37.037 0.00 0.00 0.00 3.01
2905 4301 1.180456 TAAACTGGCTGACGACCCGA 61.180 55.000 0.00 0.00 0.00 5.14
2919 4315 1.677552 CCGCTGGAGTGGGTAAACT 59.322 57.895 0.00 0.00 41.84 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.