Multiple sequence alignment - TraesCS3B01G383900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G383900 chr3B 100.000 5204 0 0 1 5204 603829335 603834538 0.000000e+00 9611.0
1 TraesCS3B01G383900 chr3B 95.161 124 6 0 1760 1883 667390123 667390000 4.110000e-46 196.0
2 TraesCS3B01G383900 chr3D 91.139 1817 75 25 1 1768 457029994 457031773 0.000000e+00 2385.0
3 TraesCS3B01G383900 chr3D 94.055 656 25 6 2790 3435 457032315 457032966 0.000000e+00 983.0
4 TraesCS3B01G383900 chr3D 91.595 583 34 5 3622 4198 457032963 457033536 0.000000e+00 791.0
5 TraesCS3B01G383900 chr3D 86.004 543 23 25 4693 5204 457033894 457034414 2.760000e-147 532.0
6 TraesCS3B01G383900 chr3D 95.000 340 10 2 4196 4531 457033560 457033896 1.280000e-145 527.0
7 TraesCS3B01G383900 chr3D 90.650 246 8 4 2514 2749 457031979 457032219 3.910000e-81 313.0
8 TraesCS3B01G383900 chr3D 93.130 131 8 1 1764 1893 66262960 66262830 1.910000e-44 191.0
9 TraesCS3B01G383900 chr3D 100.000 35 0 0 2748 2782 457032237 457032271 1.210000e-06 65.8
10 TraesCS3B01G383900 chr3A 90.695 1784 81 28 1 1731 599895757 599897508 0.000000e+00 2296.0
11 TraesCS3B01G383900 chr3A 94.305 597 17 11 2846 3435 599899033 599899619 0.000000e+00 898.0
12 TraesCS3B01G383900 chr3A 89.886 613 26 15 3945 4527 599899887 599900493 0.000000e+00 756.0
13 TraesCS3B01G383900 chr3A 84.587 545 30 26 4693 5204 599900503 599901026 4.680000e-135 492.0
14 TraesCS3B01G383900 chr3A 85.564 381 31 9 2211 2584 599898022 599898385 1.370000e-100 377.0
15 TraesCS3B01G383900 chr3A 89.151 212 17 5 1879 2089 599897576 599897782 5.170000e-65 259.0
16 TraesCS3B01G383900 chr3A 91.489 188 15 1 2592 2778 599898712 599898899 1.860000e-64 257.0
17 TraesCS3B01G383900 chr3A 83.654 208 17 7 3622 3827 599899616 599899808 4.140000e-41 180.0
18 TraesCS3B01G383900 chr3A 96.000 50 2 0 1718 1767 599897527 599897576 1.200000e-11 82.4
19 TraesCS3B01G383900 chr4B 84.712 556 46 22 993 1547 619224838 619224321 2.150000e-143 520.0
20 TraesCS3B01G383900 chr4B 89.362 235 25 0 3946 4180 619222909 619222675 3.940000e-76 296.0
21 TraesCS3B01G383900 chr4B 96.386 166 6 0 3457 3622 666668293 666668458 1.850000e-69 274.0
22 TraesCS3B01G383900 chr4B 93.855 179 9 2 3457 3634 328009276 328009099 8.590000e-68 268.0
23 TraesCS3B01G383900 chr4B 89.655 174 18 0 4518 4691 427361737 427361564 6.780000e-54 222.0
24 TraesCS3B01G383900 chr4B 90.854 164 15 0 4528 4691 531652213 531652050 2.440000e-53 220.0
25 TraesCS3B01G383900 chr5B 93.855 179 9 2 3457 3634 84580274 84580451 8.590000e-68 268.0
26 TraesCS3B01G383900 chr5B 93.820 178 8 3 3455 3630 680850956 680850780 1.110000e-66 265.0
27 TraesCS3B01G383900 chr5B 92.025 163 13 0 4529 4691 243426373 243426535 4.050000e-56 230.0
28 TraesCS3B01G383900 chr5B 91.411 163 14 0 4529 4691 660485148 660485310 1.890000e-54 224.0
29 TraesCS3B01G383900 chr5B 94.531 128 6 1 1764 1891 446529745 446529619 4.110000e-46 196.0
30 TraesCS3B01G383900 chr5B 94.488 127 5 2 1763 1888 658160356 658160231 1.480000e-45 195.0
31 TraesCS3B01G383900 chr4D 93.855 179 9 2 3457 3634 329878613 329878790 8.590000e-68 268.0
32 TraesCS3B01G383900 chr1D 80.692 347 61 4 2864 3207 53231524 53231867 1.110000e-66 265.0
33 TraesCS3B01G383900 chr1A 80.692 347 61 4 2864 3207 53023015 53023358 1.110000e-66 265.0
34 TraesCS3B01G383900 chr1A 93.985 133 8 0 1751 1883 41745076 41745208 8.840000e-48 202.0
35 TraesCS3B01G383900 chr6D 93.296 179 10 2 3457 3634 468312635 468312458 4.000000e-66 263.0
36 TraesCS3B01G383900 chr6D 74.112 197 31 16 3008 3194 2107577 2107391 4.350000e-06 63.9
37 TraesCS3B01G383900 chr5D 93.296 179 10 2 3457 3634 248193521 248193344 4.000000e-66 263.0
38 TraesCS3B01G383900 chr2D 93.296 179 10 2 3457 3634 610329681 610329858 4.000000e-66 263.0
39 TraesCS3B01G383900 chr2D 78.756 193 30 7 3008 3196 590930810 590930625 9.150000e-23 119.0
40 TraesCS3B01G383900 chr1B 93.296 179 10 2 3457 3634 174407329 174407506 4.000000e-66 263.0
41 TraesCS3B01G383900 chr1B 80.403 347 62 4 2864 3207 85432670 85433013 5.170000e-65 259.0
42 TraesCS3B01G383900 chr1B 91.463 164 14 0 4529 4692 409702704 409702541 5.240000e-55 226.0
43 TraesCS3B01G383900 chr2B 92.025 163 13 0 4529 4691 75454555 75454717 4.050000e-56 230.0
44 TraesCS3B01G383900 chr2B 90.286 175 16 1 4517 4691 799523619 799523792 1.460000e-55 228.0
45 TraesCS3B01G383900 chr2B 91.852 135 10 1 1764 1897 548950874 548950740 2.470000e-43 187.0
46 TraesCS3B01G383900 chr6B 91.463 164 14 0 4528 4691 44844237 44844074 5.240000e-55 226.0
47 TraesCS3B01G383900 chr6B 76.724 116 20 5 3008 3121 4458858 4458748 2.020000e-04 58.4
48 TraesCS3B01G383900 chr7D 89.941 169 16 1 4524 4692 71312269 71312436 3.160000e-52 217.0
49 TraesCS3B01G383900 chr7B 93.985 133 7 1 1751 1882 535690877 535690745 3.180000e-47 200.0
50 TraesCS3B01G383900 chr7B 91.156 147 8 4 1744 1889 568676761 568676903 1.480000e-45 195.0
51 TraesCS3B01G383900 chr2A 94.444 126 7 0 1758 1883 17866101 17866226 1.480000e-45 195.0
52 TraesCS3B01G383900 chr6A 74.619 197 30 15 3008 3194 787461 787647 9.350000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G383900 chr3B 603829335 603834538 5203 False 9611.000000 9611 100.000000 1 5204 1 chr3B.!!$F1 5203
1 TraesCS3B01G383900 chr3D 457029994 457034414 4420 False 799.542857 2385 92.634714 1 5204 7 chr3D.!!$F1 5203
2 TraesCS3B01G383900 chr3A 599895757 599901026 5269 False 621.933333 2296 89.481222 1 5204 9 chr3A.!!$F1 5203
3 TraesCS3B01G383900 chr4B 619222675 619224838 2163 True 408.000000 520 87.037000 993 4180 2 chr4B.!!$R4 3187

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 651 0.039437 CTCGTGCTAGTCACCGTGTT 60.039 55.0 10.44 0.0 42.69 3.32 F
1671 1949 0.179145 ACACGACGACGATTGATCCC 60.179 55.0 15.32 0.0 42.66 3.85 F
2095 2412 0.034059 AGCCATGACGGGATCGATTC 59.966 55.0 0.00 0.0 40.11 2.52 F
2411 2869 0.037590 ATCAGCGTTTGGCCAGGTTA 59.962 50.0 5.11 0.0 45.17 2.85 F
3542 4934 0.173481 ACGTCAGCATACACGCATCT 59.827 50.0 0.00 0.0 39.73 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 2179 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.00 0.00 0.00 3.46 R
3523 4915 0.173481 AGATGCGTGTATGCTGACGT 59.827 50.0 0.00 0.00 37.89 4.34 R
3830 5228 0.321475 TCGTTCATGGCTCATGCACA 60.321 50.0 14.54 0.00 37.74 4.57 R
3831 5229 1.019673 ATCGTTCATGGCTCATGCAC 58.980 50.0 9.54 8.48 41.18 4.57 R
5065 6559 0.387929 GGGCATTCTCACCGTCGATA 59.612 55.0 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.312973 ACAAATTGTTTGGCTCGTTCGTA 59.687 39.130 7.28 0.00 44.81 3.43
32 33 1.219646 TTGTTTGGCTCGTTCGTACC 58.780 50.000 0.00 0.00 0.00 3.34
134 136 1.301401 CGTTGTTCTTCTCCCGGCA 60.301 57.895 0.00 0.00 0.00 5.69
197 201 0.746563 GCGACGAATCCCAATTCCCA 60.747 55.000 0.00 0.00 38.46 4.37
311 319 1.528824 CGGCCACCCAGATCAGATT 59.471 57.895 2.24 0.00 0.00 2.40
361 375 5.656480 ACAAATTAAACAAACCGCAAGAGT 58.344 33.333 0.00 0.00 43.02 3.24
391 419 3.322254 TGATCCGGGCTTTAATCTCTCTC 59.678 47.826 0.00 0.00 0.00 3.20
392 420 3.033659 TCCGGGCTTTAATCTCTCTCT 57.966 47.619 0.00 0.00 0.00 3.10
393 421 2.959707 TCCGGGCTTTAATCTCTCTCTC 59.040 50.000 0.00 0.00 0.00 3.20
394 422 2.962421 CCGGGCTTTAATCTCTCTCTCT 59.038 50.000 0.00 0.00 0.00 3.10
395 423 3.005367 CCGGGCTTTAATCTCTCTCTCTC 59.995 52.174 0.00 0.00 0.00 3.20
396 424 3.888930 CGGGCTTTAATCTCTCTCTCTCT 59.111 47.826 0.00 0.00 0.00 3.10
397 425 4.023193 CGGGCTTTAATCTCTCTCTCTCTC 60.023 50.000 0.00 0.00 0.00 3.20
398 426 5.140454 GGGCTTTAATCTCTCTCTCTCTCT 58.860 45.833 0.00 0.00 0.00 3.10
399 427 5.241728 GGGCTTTAATCTCTCTCTCTCTCTC 59.758 48.000 0.00 0.00 0.00 3.20
400 428 6.064717 GGCTTTAATCTCTCTCTCTCTCTCT 58.935 44.000 0.00 0.00 0.00 3.10
401 429 6.205658 GGCTTTAATCTCTCTCTCTCTCTCTC 59.794 46.154 0.00 0.00 0.00 3.20
402 430 6.205658 GCTTTAATCTCTCTCTCTCTCTCTCC 59.794 46.154 0.00 0.00 0.00 3.71
403 431 4.713792 AATCTCTCTCTCTCTCTCTCCC 57.286 50.000 0.00 0.00 0.00 4.30
404 432 3.421394 TCTCTCTCTCTCTCTCTCCCT 57.579 52.381 0.00 0.00 0.00 4.20
431 459 4.521146 CGTCCTATATATACCCCTGTCGT 58.479 47.826 0.00 0.00 0.00 4.34
537 568 0.896226 GCTTAACTGTCTCCGGTCCT 59.104 55.000 0.00 0.00 0.00 3.85
594 625 0.530744 CCCTTGTGCTGTAGCTCGTA 59.469 55.000 5.38 0.00 42.66 3.43
600 631 0.945099 TGCTGTAGCTCGTATCCTCG 59.055 55.000 5.38 0.00 42.66 4.63
616 651 0.039437 CTCGTGCTAGTCACCGTGTT 60.039 55.000 10.44 0.00 42.69 3.32
644 679 2.346766 ATAGCGCCATGAACCATCAA 57.653 45.000 2.29 0.00 39.49 2.57
645 680 1.667236 TAGCGCCATGAACCATCAAG 58.333 50.000 2.29 0.00 39.49 3.02
646 681 1.226773 GCGCCATGAACCATCAAGC 60.227 57.895 0.00 0.00 39.49 4.01
647 682 1.660560 GCGCCATGAACCATCAAGCT 61.661 55.000 0.00 0.00 39.49 3.74
648 683 0.813184 CGCCATGAACCATCAAGCTT 59.187 50.000 0.00 0.00 39.49 3.74
649 684 1.203052 CGCCATGAACCATCAAGCTTT 59.797 47.619 0.00 0.00 39.49 3.51
650 685 2.733227 CGCCATGAACCATCAAGCTTTC 60.733 50.000 0.00 0.00 39.49 2.62
651 686 2.733227 GCCATGAACCATCAAGCTTTCG 60.733 50.000 0.00 0.00 39.49 3.46
652 687 2.523015 CATGAACCATCAAGCTTTCGC 58.477 47.619 0.00 0.00 39.49 4.70
732 771 1.868251 GTCCACGAGACGTCATCGC 60.868 63.158 26.39 13.52 43.91 4.58
733 772 2.038837 TCCACGAGACGTCATCGCT 61.039 57.895 26.39 16.21 43.91 4.93
1100 1174 2.432456 CTGCTACGTCAAGCCGCA 60.432 61.111 7.82 0.98 42.05 5.69
1245 1322 2.105128 CTGATCACCGAGGCCGTC 59.895 66.667 0.00 0.00 0.00 4.79
1541 1618 1.331756 CATCTGCAAGTATGTTCCCGC 59.668 52.381 0.00 0.00 33.76 6.13
1568 1830 3.462021 CCCGCCTTTTGATTTTTCACAA 58.538 40.909 0.00 0.00 0.00 3.33
1576 1838 8.066000 GCCTTTTGATTTTTCACAAGATTCTTG 58.934 33.333 22.00 22.00 31.17 3.02
1584 1846 3.338249 TCACAAGATTCTTGCTGGCTAC 58.662 45.455 23.22 0.00 0.00 3.58
1657 1935 3.766151 CGGCTGAGAAGTAATTACACGA 58.234 45.455 17.65 3.75 0.00 4.35
1662 1940 4.397382 TGAGAAGTAATTACACGACGACG 58.603 43.478 17.65 5.58 45.75 5.12
1671 1949 0.179145 ACACGACGACGATTGATCCC 60.179 55.000 15.32 0.00 42.66 3.85
1716 2033 4.063998 TGTACTCATTGCAGCTCCTATG 57.936 45.455 0.00 0.00 0.00 2.23
1768 2085 8.643324 ACTTTGACTTTCAGTATCTTGTACTCT 58.357 33.333 0.00 0.00 0.00 3.24
1771 2088 8.046294 TGACTTTCAGTATCTTGTACTCTCTC 57.954 38.462 0.00 0.00 0.00 3.20
1772 2089 7.121463 TGACTTTCAGTATCTTGTACTCTCTCC 59.879 40.741 0.00 0.00 0.00 3.71
1773 2090 6.094325 ACTTTCAGTATCTTGTACTCTCTCCG 59.906 42.308 0.00 0.00 0.00 4.63
1775 2092 5.117584 TCAGTATCTTGTACTCTCTCCGTC 58.882 45.833 0.00 0.00 0.00 4.79
1776 2093 4.273969 CAGTATCTTGTACTCTCTCCGTCC 59.726 50.000 0.00 0.00 0.00 4.79
1777 2094 1.735386 TCTTGTACTCTCTCCGTCCG 58.265 55.000 0.00 0.00 0.00 4.79
1778 2095 0.733729 CTTGTACTCTCTCCGTCCGG 59.266 60.000 0.00 0.00 0.00 5.14
1779 2096 0.679002 TTGTACTCTCTCCGTCCGGG 60.679 60.000 0.00 0.00 35.59 5.73
1782 2099 0.549950 TACTCTCTCCGTCCGGGAAT 59.450 55.000 0.00 0.00 46.61 3.01
1783 2100 0.549950 ACTCTCTCCGTCCGGGAATA 59.450 55.000 0.00 0.00 46.61 1.75
1784 2101 0.953003 CTCTCTCCGTCCGGGAATAC 59.047 60.000 0.00 0.00 46.61 1.89
1786 2103 1.064166 TCTCTCCGTCCGGGAATACTT 60.064 52.381 0.00 0.00 46.61 2.24
1788 2105 2.167900 CTCTCCGTCCGGGAATACTTTT 59.832 50.000 0.00 0.00 46.61 2.27
1789 2106 2.167075 TCTCCGTCCGGGAATACTTTTC 59.833 50.000 0.00 0.00 46.61 2.29
1790 2107 1.901159 TCCGTCCGGGAATACTTTTCA 59.099 47.619 0.00 0.00 43.62 2.69
1791 2108 2.502538 TCCGTCCGGGAATACTTTTCAT 59.497 45.455 0.00 0.00 43.62 2.57
1793 2110 3.064820 CCGTCCGGGAATACTTTTCATTG 59.935 47.826 0.00 0.00 38.47 2.82
1794 2111 3.936453 CGTCCGGGAATACTTTTCATTGA 59.064 43.478 0.00 0.00 0.00 2.57
1795 2112 4.393680 CGTCCGGGAATACTTTTCATTGAA 59.606 41.667 0.00 0.00 0.00 2.69
1796 2113 5.106475 CGTCCGGGAATACTTTTCATTGAAA 60.106 40.000 7.74 7.74 0.00 2.69
1797 2114 6.404293 CGTCCGGGAATACTTTTCATTGAAAT 60.404 38.462 12.39 1.98 31.34 2.17
1798 2115 6.751888 GTCCGGGAATACTTTTCATTGAAATG 59.248 38.462 18.43 18.43 37.75 2.32
1799 2116 6.042143 CCGGGAATACTTTTCATTGAAATGG 58.958 40.000 21.96 15.79 37.03 3.16
1800 2117 6.127479 CCGGGAATACTTTTCATTGAAATGGA 60.127 38.462 21.96 17.09 37.03 3.41
1801 2118 7.417797 CCGGGAATACTTTTCATTGAAATGGAT 60.418 37.037 21.96 18.24 33.52 3.41
1802 2119 7.436080 CGGGAATACTTTTCATTGAAATGGATG 59.564 37.037 18.48 7.02 32.81 3.51
1803 2120 8.260114 GGGAATACTTTTCATTGAAATGGATGT 58.740 33.333 18.48 11.40 32.81 3.06
1845 2162 9.699410 AGTTTTAGATACATCCATTTTCATCCA 57.301 29.630 0.00 0.00 0.00 3.41
1851 2168 9.204337 AGATACATCCATTTTCATCCATTTTGA 57.796 29.630 0.00 0.00 0.00 2.69
1852 2169 9.991906 GATACATCCATTTTCATCCATTTTGAT 57.008 29.630 0.00 0.00 0.00 2.57
1853 2170 9.772973 ATACATCCATTTTCATCCATTTTGATG 57.227 29.630 0.00 0.00 42.84 3.07
1865 2182 9.859427 TCATCCATTTTGATGACAAGTAATTTC 57.141 29.630 0.00 0.00 44.65 2.17
1866 2183 8.800972 CATCCATTTTGATGACAAGTAATTTCG 58.199 33.333 0.00 0.00 43.94 3.46
1867 2184 7.312154 TCCATTTTGATGACAAGTAATTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
1868 2185 7.175816 TCCATTTTGATGACAAGTAATTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
1869 2186 7.273381 CCATTTTGATGACAAGTAATTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
1870 2187 5.524511 TTGATGACAAGTAATTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1871 2188 3.930229 TGATGACAAGTAATTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1872 2189 3.663995 TGACAAGTAATTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1873 2190 3.581755 TGACAAGTAATTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1874 2191 2.928116 GACAAGTAATTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1875 2192 2.277084 CAAGTAATTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1876 2193 1.856629 AGTAATTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1877 2194 1.755380 AGTAATTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1890 2207 4.220724 ACGGAGGGAGTACTTAATATGCA 58.779 43.478 0.00 0.00 0.00 3.96
1893 2210 6.153000 ACGGAGGGAGTACTTAATATGCATAG 59.847 42.308 12.79 2.46 0.00 2.23
1895 2212 7.548967 GGAGGGAGTACTTAATATGCATAGAC 58.451 42.308 12.79 3.59 0.00 2.59
1931 2248 9.485206 AATTACTACACTTTCGTGAAACATAGT 57.515 29.630 0.00 10.69 43.97 2.12
2011 2328 8.592155 GTGTTTTCAAGTTCAAAGTGGTAAATC 58.408 33.333 0.00 0.00 0.00 2.17
2012 2329 8.527810 TGTTTTCAAGTTCAAAGTGGTAAATCT 58.472 29.630 0.00 0.00 0.00 2.40
2015 2332 8.463930 TTCAAGTTCAAAGTGGTAAATCTCAT 57.536 30.769 0.00 0.00 0.00 2.90
2017 2334 9.219603 TCAAGTTCAAAGTGGTAAATCTCATAG 57.780 33.333 0.00 0.00 0.00 2.23
2024 2341 6.240549 AGTGGTAAATCTCATAGGGACAAG 57.759 41.667 0.00 0.00 0.00 3.16
2089 2406 2.683465 AAGCCAGCCATGACGGGAT 61.683 57.895 1.60 0.00 34.06 3.85
2090 2407 2.592861 GCCAGCCATGACGGGATC 60.593 66.667 1.60 0.00 34.06 3.36
2091 2408 2.280389 CCAGCCATGACGGGATCG 60.280 66.667 0.00 0.00 43.02 3.69
2092 2409 2.796193 CCAGCCATGACGGGATCGA 61.796 63.158 0.00 0.00 40.11 3.59
2093 2410 1.368950 CAGCCATGACGGGATCGAT 59.631 57.895 0.00 0.00 40.11 3.59
2094 2411 0.250038 CAGCCATGACGGGATCGATT 60.250 55.000 0.00 0.00 40.11 3.34
2095 2412 0.034059 AGCCATGACGGGATCGATTC 59.966 55.000 0.00 0.00 40.11 2.52
2096 2413 0.034059 GCCATGACGGGATCGATTCT 59.966 55.000 3.13 0.00 40.11 2.40
2097 2414 1.937108 GCCATGACGGGATCGATTCTC 60.937 57.143 3.13 0.00 40.11 2.87
2098 2415 1.341209 CCATGACGGGATCGATTCTCA 59.659 52.381 3.13 0.59 40.11 3.27
2099 2416 2.028658 CCATGACGGGATCGATTCTCAT 60.029 50.000 3.13 3.16 40.11 2.90
2100 2417 3.249091 CATGACGGGATCGATTCTCATC 58.751 50.000 3.13 0.00 40.11 2.92
2119 2436 6.100569 TCTCATCGGGGGATTTAATTAAGTCA 59.899 38.462 18.93 2.57 0.00 3.41
2122 2439 7.616150 TCATCGGGGGATTTAATTAAGTCAAAA 59.384 33.333 18.93 0.00 0.00 2.44
2129 2446 9.983804 GGGATTTAATTAAGTCAAAAGTCTACG 57.016 33.333 18.93 0.00 0.00 3.51
2147 2464 9.810870 AAGTCTACGATATACTAGAATTTCCCT 57.189 33.333 0.00 0.00 0.00 4.20
2148 2465 9.810870 AGTCTACGATATACTAGAATTTCCCTT 57.189 33.333 0.00 0.00 0.00 3.95
2180 2584 8.666129 AAAGATATACTCCCTTCGATCCATAA 57.334 34.615 0.00 0.00 0.00 1.90
2190 2594 6.014925 TCCCTTCGATCCATAATAATTGTCGA 60.015 38.462 0.00 0.00 35.19 4.20
2191 2595 6.818644 CCCTTCGATCCATAATAATTGTCGAT 59.181 38.462 0.00 0.00 36.65 3.59
2192 2596 7.201556 CCCTTCGATCCATAATAATTGTCGATG 60.202 40.741 0.00 0.00 36.65 3.84
2193 2597 7.201556 CCTTCGATCCATAATAATTGTCGATGG 60.202 40.741 10.82 10.82 41.86 3.51
2206 2610 7.739498 AATTGTCGATGGTTTAGTACAACTT 57.261 32.000 0.00 0.00 30.40 2.66
2207 2611 7.739498 ATTGTCGATGGTTTAGTACAACTTT 57.261 32.000 0.00 0.00 30.40 2.66
2208 2612 8.836268 ATTGTCGATGGTTTAGTACAACTTTA 57.164 30.769 0.00 0.00 30.40 1.85
2209 2613 8.659925 TTGTCGATGGTTTAGTACAACTTTAA 57.340 30.769 0.00 0.00 0.00 1.52
2212 2664 9.148104 GTCGATGGTTTAGTACAACTTTAAGAT 57.852 33.333 0.00 0.00 0.00 2.40
2232 2684 4.785376 AGATTACCAGAATCTGTTCCTGGT 59.215 41.667 16.23 16.23 42.82 4.00
2235 2687 2.711009 ACCAGAATCTGTTCCTGGTGAA 59.289 45.455 11.96 0.00 40.82 3.18
2243 2695 5.514274 TCTGTTCCTGGTGAAAATTGAAC 57.486 39.130 0.00 0.00 33.94 3.18
2245 2697 3.948473 TGTTCCTGGTGAAAATTGAACGA 59.052 39.130 0.00 0.00 35.93 3.85
2247 2699 2.546368 TCCTGGTGAAAATTGAACGACG 59.454 45.455 0.00 0.00 0.00 5.12
2248 2700 2.350388 CCTGGTGAAAATTGAACGACGG 60.350 50.000 0.00 0.00 0.00 4.79
2263 2715 2.991190 ACGACGGTCAACATGAACATAC 59.009 45.455 9.10 0.00 32.48 2.39
2270 2722 4.518970 GGTCAACATGAACATACCACAACT 59.481 41.667 0.00 0.00 33.38 3.16
2287 2743 1.313475 CTCCCCTACCACTGGGCTA 59.687 63.158 0.00 0.00 43.26 3.93
2348 2804 3.855159 GTGGAGTGACATACCACCC 57.145 57.895 17.61 0.00 45.53 4.61
2349 2805 0.981183 GTGGAGTGACATACCACCCA 59.019 55.000 17.61 0.00 45.53 4.51
2365 2821 4.017037 ACCACCCACCATGTCCAAATATTA 60.017 41.667 0.00 0.00 0.00 0.98
2397 2855 6.690194 ATCTCCACAAAACTTATGATCAGC 57.310 37.500 0.09 0.00 0.00 4.26
2398 2856 4.631377 TCTCCACAAAACTTATGATCAGCG 59.369 41.667 0.09 0.00 0.00 5.18
2404 2862 3.764885 AACTTATGATCAGCGTTTGGC 57.235 42.857 0.09 0.00 44.05 4.52
2405 2863 2.017049 ACTTATGATCAGCGTTTGGCC 58.983 47.619 0.09 0.00 45.17 5.36
2406 2864 2.016318 CTTATGATCAGCGTTTGGCCA 58.984 47.619 0.00 0.00 45.17 5.36
2407 2865 1.667236 TATGATCAGCGTTTGGCCAG 58.333 50.000 5.11 0.00 45.17 4.85
2408 2866 1.033746 ATGATCAGCGTTTGGCCAGG 61.034 55.000 5.11 0.07 45.17 4.45
2409 2867 1.675641 GATCAGCGTTTGGCCAGGT 60.676 57.895 5.11 0.00 45.17 4.00
2410 2868 1.228552 ATCAGCGTTTGGCCAGGTT 60.229 52.632 5.11 0.00 45.17 3.50
2411 2869 0.037590 ATCAGCGTTTGGCCAGGTTA 59.962 50.000 5.11 0.00 45.17 2.85
2412 2870 0.179015 TCAGCGTTTGGCCAGGTTAA 60.179 50.000 5.11 0.00 45.17 2.01
2413 2871 0.671251 CAGCGTTTGGCCAGGTTAAA 59.329 50.000 5.11 0.00 45.17 1.52
2414 2872 1.272212 CAGCGTTTGGCCAGGTTAAAT 59.728 47.619 5.11 0.00 45.17 1.40
2415 2873 2.490115 CAGCGTTTGGCCAGGTTAAATA 59.510 45.455 5.11 0.00 45.17 1.40
2416 2874 3.130340 CAGCGTTTGGCCAGGTTAAATAT 59.870 43.478 5.11 0.00 45.17 1.28
2417 2875 3.130340 AGCGTTTGGCCAGGTTAAATATG 59.870 43.478 5.11 0.00 45.17 1.78
2418 2876 3.129638 GCGTTTGGCCAGGTTAAATATGA 59.870 43.478 5.11 0.00 34.80 2.15
2419 2877 4.733523 GCGTTTGGCCAGGTTAAATATGAG 60.734 45.833 5.11 0.00 34.80 2.90
2471 2929 2.233676 TGATTGCAGTCCATGTAGACGT 59.766 45.455 6.77 0.00 41.83 4.34
2478 2936 4.377431 GCAGTCCATGTAGACGTGAAAAAG 60.377 45.833 0.00 0.00 41.83 2.27
2480 2938 5.465390 CAGTCCATGTAGACGTGAAAAAGAA 59.535 40.000 0.00 0.00 41.83 2.52
2496 2955 7.806014 GTGAAAAAGAAAGTATTGATTGCGGTA 59.194 33.333 0.00 0.00 0.00 4.02
2499 2958 7.391148 AAAGAAAGTATTGATTGCGGTACAT 57.609 32.000 0.00 0.00 0.00 2.29
2500 2959 6.363577 AGAAAGTATTGATTGCGGTACATG 57.636 37.500 0.00 0.00 0.00 3.21
2689 3477 1.138266 TGCCGACTACTATTCCAAGCC 59.862 52.381 0.00 0.00 0.00 4.35
2743 3534 3.243267 CCCGGTTGACCTAAAAACAACAG 60.243 47.826 0.00 0.00 43.51 3.16
2784 3598 7.164230 TCACTGTTTTGGTTGTACTTCATTT 57.836 32.000 0.00 0.00 0.00 2.32
2788 3602 6.622549 TGTTTTGGTTGTACTTCATTTTCGT 58.377 32.000 0.00 0.00 0.00 3.85
2836 3774 3.101084 CGTACACGTACTCTCACTGAC 57.899 52.381 5.84 0.00 34.04 3.51
2837 3775 2.477754 CGTACACGTACTCTCACTGACA 59.522 50.000 5.84 0.00 34.04 3.58
2922 4303 1.357258 CTGTGCGAGGTGCTGATGAC 61.357 60.000 0.00 0.00 46.63 3.06
3206 4587 1.442148 GGCGACCAGATCCAGGTAC 59.558 63.158 7.39 3.76 40.09 3.34
3211 4594 2.296471 CGACCAGATCCAGGTACATACC 59.704 54.545 7.39 0.00 46.82 2.73
3257 4640 4.377471 CATGCATGCAAGCGTCTG 57.623 55.556 26.68 13.58 37.31 3.51
3259 4642 0.728542 CATGCATGCAAGCGTCTGTA 59.271 50.000 26.68 0.00 37.31 2.74
3423 4815 2.727544 CCGGCCGGCCATAAAATG 59.272 61.111 42.78 25.24 35.37 2.32
3435 4827 4.380023 GGCCATAAAATGCGCCGATTATTA 60.380 41.667 4.18 1.91 37.05 0.98
3437 4829 6.459024 GGCCATAAAATGCGCCGATTATTATA 60.459 38.462 4.18 0.00 37.05 0.98
3438 4830 6.413818 GCCATAAAATGCGCCGATTATTATAC 59.586 38.462 4.18 0.44 0.00 1.47
3439 4831 7.678690 GCCATAAAATGCGCCGATTATTATACT 60.679 37.037 4.18 0.00 0.00 2.12
3440 4832 7.850982 CCATAAAATGCGCCGATTATTATACTC 59.149 37.037 4.18 0.00 0.00 2.59
3441 4833 5.796350 AAATGCGCCGATTATTATACTCC 57.204 39.130 4.18 0.00 0.00 3.85
3442 4834 3.241067 TGCGCCGATTATTATACTCCC 57.759 47.619 4.18 0.00 0.00 4.30
3443 4835 2.829720 TGCGCCGATTATTATACTCCCT 59.170 45.455 4.18 0.00 0.00 4.20
3444 4836 4.018490 TGCGCCGATTATTATACTCCCTA 58.982 43.478 4.18 0.00 0.00 3.53
3445 4837 4.463539 TGCGCCGATTATTATACTCCCTAA 59.536 41.667 4.18 0.00 0.00 2.69
3446 4838 5.128171 TGCGCCGATTATTATACTCCCTAAT 59.872 40.000 4.18 0.00 0.00 1.73
3447 4839 6.321945 TGCGCCGATTATTATACTCCCTAATA 59.678 38.462 4.18 0.00 0.00 0.98
3448 4840 6.640092 GCGCCGATTATTATACTCCCTAATAC 59.360 42.308 0.00 0.00 0.00 1.89
3449 4841 7.682741 GCGCCGATTATTATACTCCCTAATACA 60.683 40.741 0.00 0.00 0.00 2.29
3450 4842 7.861372 CGCCGATTATTATACTCCCTAATACAG 59.139 40.741 0.00 0.00 0.00 2.74
3451 4843 8.693625 GCCGATTATTATACTCCCTAATACAGT 58.306 37.037 0.00 0.00 0.00 3.55
3463 4855 9.544579 ACTCCCTAATACAGTTTTACTAGAACT 57.455 33.333 0.00 0.00 37.82 3.01
3465 4857 9.537852 TCCCTAATACAGTTTTACTAGAACTCA 57.462 33.333 0.00 0.00 35.26 3.41
3523 4915 9.720769 TTTTAAAACAAGAACAAATACAACCCA 57.279 25.926 0.00 0.00 0.00 4.51
3524 4916 8.705048 TTAAAACAAGAACAAATACAACCCAC 57.295 30.769 0.00 0.00 0.00 4.61
3525 4917 4.561735 ACAAGAACAAATACAACCCACG 57.438 40.909 0.00 0.00 0.00 4.94
3526 4918 3.949113 ACAAGAACAAATACAACCCACGT 59.051 39.130 0.00 0.00 0.00 4.49
3527 4919 4.035909 ACAAGAACAAATACAACCCACGTC 59.964 41.667 0.00 0.00 0.00 4.34
3528 4920 3.811083 AGAACAAATACAACCCACGTCA 58.189 40.909 0.00 0.00 0.00 4.35
3529 4921 3.813166 AGAACAAATACAACCCACGTCAG 59.187 43.478 0.00 0.00 0.00 3.51
3530 4922 1.877443 ACAAATACAACCCACGTCAGC 59.123 47.619 0.00 0.00 0.00 4.26
3531 4923 1.876799 CAAATACAACCCACGTCAGCA 59.123 47.619 0.00 0.00 0.00 4.41
3532 4924 2.487762 CAAATACAACCCACGTCAGCAT 59.512 45.455 0.00 0.00 0.00 3.79
3533 4925 3.620427 AATACAACCCACGTCAGCATA 57.380 42.857 0.00 0.00 0.00 3.14
3534 4926 2.373540 TACAACCCACGTCAGCATAC 57.626 50.000 0.00 0.00 0.00 2.39
3535 4927 0.394938 ACAACCCACGTCAGCATACA 59.605 50.000 0.00 0.00 0.00 2.29
3536 4928 0.796312 CAACCCACGTCAGCATACAC 59.204 55.000 0.00 0.00 0.00 2.90
3537 4929 0.669318 AACCCACGTCAGCATACACG 60.669 55.000 0.00 0.00 41.90 4.49
3538 4930 2.452813 CCCACGTCAGCATACACGC 61.453 63.158 0.00 0.00 39.73 5.34
3539 4931 1.736282 CCACGTCAGCATACACGCA 60.736 57.895 0.00 0.00 39.73 5.24
3540 4932 1.083806 CCACGTCAGCATACACGCAT 61.084 55.000 0.00 0.00 39.73 4.73
3541 4933 0.298707 CACGTCAGCATACACGCATC 59.701 55.000 0.00 0.00 39.73 3.91
3542 4934 0.173481 ACGTCAGCATACACGCATCT 59.827 50.000 0.00 0.00 39.73 2.90
3543 4935 1.280982 CGTCAGCATACACGCATCTT 58.719 50.000 0.00 0.00 0.00 2.40
3544 4936 2.159296 ACGTCAGCATACACGCATCTTA 60.159 45.455 0.00 0.00 39.73 2.10
3545 4937 3.052745 CGTCAGCATACACGCATCTTAT 58.947 45.455 0.00 0.00 0.00 1.73
3546 4938 4.226761 CGTCAGCATACACGCATCTTATA 58.773 43.478 0.00 0.00 0.00 0.98
3547 4939 4.322009 CGTCAGCATACACGCATCTTATAG 59.678 45.833 0.00 0.00 0.00 1.31
3548 4940 4.090642 GTCAGCATACACGCATCTTATAGC 59.909 45.833 0.00 0.00 0.00 2.97
3549 4941 3.989817 CAGCATACACGCATCTTATAGCA 59.010 43.478 0.00 0.00 0.00 3.49
3550 4942 4.628766 CAGCATACACGCATCTTATAGCAT 59.371 41.667 0.00 0.00 0.00 3.79
3551 4943 4.867047 AGCATACACGCATCTTATAGCATC 59.133 41.667 0.00 0.00 0.00 3.91
3552 4944 4.627035 GCATACACGCATCTTATAGCATCA 59.373 41.667 0.00 0.00 0.00 3.07
3553 4945 5.445142 GCATACACGCATCTTATAGCATCAC 60.445 44.000 0.00 0.00 0.00 3.06
3554 4946 4.058721 ACACGCATCTTATAGCATCACA 57.941 40.909 0.00 0.00 0.00 3.58
3555 4947 4.635223 ACACGCATCTTATAGCATCACAT 58.365 39.130 0.00 0.00 0.00 3.21
3556 4948 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
3557 4949 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
3558 4950 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
3559 4951 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
3560 4952 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
3561 4953 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
3562 4954 6.373495 GCATCTTATAGCATCACATCCAATGA 59.627 38.462 0.00 0.00 0.00 2.57
3563 4955 7.067129 GCATCTTATAGCATCACATCCAATGAT 59.933 37.037 0.00 0.00 37.27 2.45
3564 4956 8.957466 CATCTTATAGCATCACATCCAATGATT 58.043 33.333 0.00 0.00 34.49 2.57
3572 4964 8.582437 AGCATCACATCCAATGATTATAAAAGG 58.418 33.333 0.00 0.00 34.49 3.11
3573 4965 8.362639 GCATCACATCCAATGATTATAAAAGGT 58.637 33.333 0.00 0.00 34.49 3.50
3574 4966 9.687210 CATCACATCCAATGATTATAAAAGGTG 57.313 33.333 0.00 0.00 34.49 4.00
3575 4967 9.645128 ATCACATCCAATGATTATAAAAGGTGA 57.355 29.630 0.00 0.00 32.77 4.02
3576 4968 9.473007 TCACATCCAATGATTATAAAAGGTGAA 57.527 29.630 0.00 0.00 0.00 3.18
3581 4973 9.919416 TCCAATGATTATAAAAGGTGAATGAGA 57.081 29.630 0.00 0.00 0.00 3.27
3620 5012 8.939929 TCATCTAAATGAGTTCTAGCAAAACTG 58.060 33.333 0.32 0.00 36.98 3.16
3621 5013 8.725148 CATCTAAATGAGTTCTAGCAAAACTGT 58.275 33.333 0.32 0.00 37.10 3.55
3622 5014 9.944376 ATCTAAATGAGTTCTAGCAAAACTGTA 57.056 29.630 0.32 0.00 37.10 2.74
3623 5015 9.944376 TCTAAATGAGTTCTAGCAAAACTGTAT 57.056 29.630 0.32 0.00 37.10 2.29
3675 5067 5.527582 ACGTACTTTTGTCTTCTGAAGCAAT 59.472 36.000 20.08 12.49 0.00 3.56
3681 5073 4.990543 TGTCTTCTGAAGCAATTACGTG 57.009 40.909 12.54 0.00 0.00 4.49
3697 5089 2.439701 TGCCTCCCTCGGACGTAG 60.440 66.667 0.00 0.00 0.00 3.51
3827 5225 4.639334 CATAGCTAGACATTCCATGTGCT 58.361 43.478 0.00 0.30 45.03 4.40
3828 5226 2.915349 AGCTAGACATTCCATGTGCTG 58.085 47.619 0.00 0.00 45.03 4.41
3829 5227 2.502947 AGCTAGACATTCCATGTGCTGA 59.497 45.455 0.00 0.00 45.03 4.26
3830 5228 3.136077 AGCTAGACATTCCATGTGCTGAT 59.864 43.478 0.00 0.00 45.03 2.90
3831 5229 3.250280 GCTAGACATTCCATGTGCTGATG 59.750 47.826 0.00 0.00 45.03 3.07
3832 5230 3.361281 AGACATTCCATGTGCTGATGT 57.639 42.857 0.00 0.00 45.03 3.06
3833 5231 3.014623 AGACATTCCATGTGCTGATGTG 58.985 45.455 0.00 0.00 45.03 3.21
3834 5232 1.475280 ACATTCCATGTGCTGATGTGC 59.525 47.619 0.00 0.00 43.01 4.57
3835 5233 1.474879 CATTCCATGTGCTGATGTGCA 59.525 47.619 0.00 0.00 41.05 4.57
3851 5249 2.212652 GTGCATGAGCCATGAACGATA 58.787 47.619 16.46 0.00 43.81 2.92
3855 5253 3.251729 GCATGAGCCATGAACGATACATT 59.748 43.478 16.46 0.00 43.81 2.71
3856 5254 4.779987 CATGAGCCATGAACGATACATTG 58.220 43.478 8.92 0.00 43.81 2.82
3857 5255 3.205338 TGAGCCATGAACGATACATTGG 58.795 45.455 0.00 0.00 0.00 3.16
3868 5291 4.501071 ACGATACATTGGTGTCAGTAACC 58.499 43.478 0.00 0.00 39.77 2.85
3871 5294 5.747197 CGATACATTGGTGTCAGTAACCTAC 59.253 44.000 0.00 0.00 39.77 3.18
3890 5313 2.826428 ACATATGCTGCTCCGTACTTG 58.174 47.619 1.58 0.00 0.00 3.16
3898 5321 1.287425 GCTCCGTACTTGTATGTGCC 58.713 55.000 0.00 0.00 0.00 5.01
3900 5323 2.540515 CTCCGTACTTGTATGTGCCAG 58.459 52.381 0.00 0.00 0.00 4.85
3903 5326 3.119388 TCCGTACTTGTATGTGCCAGTAC 60.119 47.826 0.00 0.00 0.00 2.73
3943 5366 5.776173 TTGTTGGTGTAACTAATTGTGGG 57.224 39.130 0.00 0.00 40.26 4.61
4219 5668 4.095185 TCAATTAATTAACCGGGTCTTGCG 59.905 41.667 6.32 0.00 0.00 4.85
4320 5769 1.568612 AAACTGCATGCCGACTCGTG 61.569 55.000 16.68 0.00 0.00 4.35
4321 5770 2.433145 CTGCATGCCGACTCGTGT 60.433 61.111 16.68 0.00 0.00 4.49
4322 5771 1.153842 CTGCATGCCGACTCGTGTA 60.154 57.895 16.68 0.00 0.00 2.90
4357 5806 6.239858 CCTGTATGATATGTGTACCCCAATCA 60.240 42.308 0.00 0.00 0.00 2.57
4413 5865 7.015389 TGCTGATTATATTGGCATTTTGATCCA 59.985 33.333 0.00 0.00 0.00 3.41
4534 5998 3.426903 ATGCATGCATGGTACTCCC 57.573 52.632 31.74 9.80 35.03 4.30
4535 5999 0.848735 ATGCATGCATGGTACTCCCT 59.151 50.000 31.74 4.69 35.03 4.20
4536 6000 0.181114 TGCATGCATGGTACTCCCTC 59.819 55.000 27.34 8.37 0.00 4.30
4537 6001 0.536006 GCATGCATGGTACTCCCTCC 60.536 60.000 27.34 3.43 0.00 4.30
4538 6002 0.839277 CATGCATGGTACTCCCTCCA 59.161 55.000 19.40 0.00 38.14 3.86
4539 6003 1.422781 CATGCATGGTACTCCCTCCAT 59.577 52.381 19.40 0.00 44.15 3.41
4540 6004 1.595311 TGCATGGTACTCCCTCCATT 58.405 50.000 0.00 0.00 41.79 3.16
4541 6005 1.922447 TGCATGGTACTCCCTCCATTT 59.078 47.619 0.00 0.00 41.79 2.32
4542 6006 2.092429 TGCATGGTACTCCCTCCATTTC 60.092 50.000 0.00 0.00 41.79 2.17
4543 6007 2.173569 GCATGGTACTCCCTCCATTTCT 59.826 50.000 0.00 0.00 41.79 2.52
4544 6008 3.391296 GCATGGTACTCCCTCCATTTCTA 59.609 47.826 0.00 0.00 41.79 2.10
4545 6009 4.141482 GCATGGTACTCCCTCCATTTCTAA 60.141 45.833 0.00 0.00 41.79 2.10
4546 6010 5.631481 GCATGGTACTCCCTCCATTTCTAAA 60.631 44.000 0.00 0.00 41.79 1.85
4547 6011 6.605119 CATGGTACTCCCTCCATTTCTAAAT 58.395 40.000 0.00 0.00 41.79 1.40
4548 6012 6.001449 TGGTACTCCCTCCATTTCTAAATG 57.999 41.667 8.21 8.21 44.12 2.32
4549 6013 5.491078 TGGTACTCCCTCCATTTCTAAATGT 59.509 40.000 12.99 0.00 43.24 2.71
4550 6014 6.674861 TGGTACTCCCTCCATTTCTAAATGTA 59.325 38.462 12.99 0.00 43.24 2.29
4551 6015 7.183112 TGGTACTCCCTCCATTTCTAAATGTAA 59.817 37.037 12.99 2.38 43.24 2.41
4552 6016 7.715686 GGTACTCCCTCCATTTCTAAATGTAAG 59.284 40.741 12.99 9.99 43.24 2.34
4553 6017 7.272144 ACTCCCTCCATTTCTAAATGTAAGT 57.728 36.000 12.99 6.97 43.24 2.24
4554 6018 7.339482 ACTCCCTCCATTTCTAAATGTAAGTC 58.661 38.462 12.99 0.00 43.24 3.01
4555 6019 7.182930 ACTCCCTCCATTTCTAAATGTAAGTCT 59.817 37.037 12.99 0.00 43.24 3.24
4556 6020 7.928873 TCCCTCCATTTCTAAATGTAAGTCTT 58.071 34.615 12.99 0.00 43.24 3.01
4557 6021 8.390921 TCCCTCCATTTCTAAATGTAAGTCTTT 58.609 33.333 12.99 0.00 43.24 2.52
4558 6022 8.462016 CCCTCCATTTCTAAATGTAAGTCTTTG 58.538 37.037 12.99 0.00 43.24 2.77
4559 6023 9.014297 CCTCCATTTCTAAATGTAAGTCTTTGT 57.986 33.333 12.99 0.00 43.24 2.83
4633 6097 9.906660 TGTTTAGATTTATTCATTTTGCTTCGT 57.093 25.926 0.00 0.00 0.00 3.85
4642 6106 9.982291 TTATTCATTTTGCTTCGTATGTAGTTC 57.018 29.630 0.00 0.00 0.00 3.01
4643 6107 7.428282 TTCATTTTGCTTCGTATGTAGTTCA 57.572 32.000 0.00 0.00 0.00 3.18
4644 6108 6.827641 TCATTTTGCTTCGTATGTAGTTCAC 58.172 36.000 0.00 0.00 0.00 3.18
4645 6109 5.600908 TTTTGCTTCGTATGTAGTTCACC 57.399 39.130 0.00 0.00 0.00 4.02
4646 6110 4.530710 TTGCTTCGTATGTAGTTCACCT 57.469 40.909 0.00 0.00 0.00 4.00
4647 6111 5.648178 TTGCTTCGTATGTAGTTCACCTA 57.352 39.130 0.00 0.00 0.00 3.08
4648 6112 5.244785 TGCTTCGTATGTAGTTCACCTAG 57.755 43.478 0.00 0.00 0.00 3.02
4649 6113 4.703575 TGCTTCGTATGTAGTTCACCTAGT 59.296 41.667 0.00 0.00 0.00 2.57
4650 6114 5.035443 GCTTCGTATGTAGTTCACCTAGTG 58.965 45.833 0.00 0.00 34.45 2.74
4651 6115 5.163683 GCTTCGTATGTAGTTCACCTAGTGA 60.164 44.000 0.00 0.00 41.09 3.41
4667 6131 9.702253 TCACCTAGTGAAATCTCTATAAAGACT 57.298 33.333 0.00 0.00 39.78 3.24
4686 6150 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
4687 6151 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
4688 6152 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
4689 6153 7.564292 AGACTTATATTTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
4690 6154 8.773033 ACTTATATTTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
4691 6155 8.637099 ACTTATATTTAGGAACGGAGGAAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
4692 6156 8.773033 TTATATTTAGGAACGGAGGAAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
4693 6157 9.866655 TTATATTTAGGAACGGAGGAAGTACTA 57.133 33.333 0.00 0.00 0.00 1.82
4694 6158 5.904362 TTTAGGAACGGAGGAAGTACTAC 57.096 43.478 0.00 0.00 0.00 2.73
4713 6177 3.247006 ACGAAATGTACCGAGCTTCAT 57.753 42.857 0.00 0.00 0.00 2.57
4760 6224 6.342111 TCACCGAATATAAACATGTACTGCA 58.658 36.000 0.00 0.00 0.00 4.41
4764 6228 6.129393 CGAATATAAACATGTACTGCACTGC 58.871 40.000 0.00 0.00 0.00 4.40
4765 6229 6.238076 CGAATATAAACATGTACTGCACTGCA 60.238 38.462 0.00 3.11 36.92 4.41
4766 6230 7.518848 CGAATATAAACATGTACTGCACTGCAT 60.519 37.037 3.64 0.00 38.13 3.96
4767 6231 3.564235 AAACATGTACTGCACTGCATG 57.436 42.857 18.18 18.18 42.93 4.06
4769 6233 0.736636 CATGTACTGCACTGCATGGG 59.263 55.000 13.93 0.00 38.13 4.00
4770 6234 0.329261 ATGTACTGCACTGCATGGGT 59.671 50.000 3.64 1.86 38.13 4.51
4771 6235 0.606130 TGTACTGCACTGCATGGGTG 60.606 55.000 3.64 0.37 38.13 4.61
4772 6236 0.321564 GTACTGCACTGCATGGGTGA 60.322 55.000 3.64 0.00 38.13 4.02
4773 6237 0.620030 TACTGCACTGCATGGGTGAT 59.380 50.000 3.64 0.00 38.13 3.06
4774 6238 0.620030 ACTGCACTGCATGGGTGATA 59.380 50.000 3.64 0.00 38.13 2.15
4775 6239 1.213678 ACTGCACTGCATGGGTGATAT 59.786 47.619 3.64 0.00 38.13 1.63
4776 6240 1.878088 CTGCACTGCATGGGTGATATC 59.122 52.381 3.64 0.00 38.13 1.63
4777 6241 1.212441 TGCACTGCATGGGTGATATCA 59.788 47.619 8.64 0.00 36.89 2.15
4778 6242 1.605710 GCACTGCATGGGTGATATCAC 59.394 52.381 24.95 24.95 45.72 3.06
4780 6244 6.925782 TGCACTGCATGGGTGATATCACAA 62.926 45.833 31.51 21.52 40.24 3.33
4801 6293 2.429610 AGTAATATTCCGTCACGCCAGT 59.570 45.455 0.00 0.00 0.00 4.00
4824 6316 1.135315 GGCACGTGCACATCACATC 59.865 57.895 38.60 16.62 45.92 3.06
4825 6317 1.225827 GCACGTGCACATCACATCG 60.226 57.895 34.52 2.23 45.92 3.84
4826 6318 1.421093 CACGTGCACATCACATCGG 59.579 57.895 18.64 0.00 45.92 4.18
4827 6319 1.013524 CACGTGCACATCACATCGGA 61.014 55.000 18.64 0.00 45.92 4.55
4828 6320 0.108186 ACGTGCACATCACATCGGAT 60.108 50.000 18.64 0.00 45.92 4.18
4829 6321 0.578683 CGTGCACATCACATCGGATC 59.421 55.000 18.64 0.00 45.92 3.36
4831 6323 1.596260 GTGCACATCACATCGGATCTG 59.404 52.381 13.17 0.00 44.98 2.90
4832 6324 1.207811 TGCACATCACATCGGATCTGT 59.792 47.619 0.42 0.00 0.00 3.41
4834 6326 2.797156 GCACATCACATCGGATCTGTAC 59.203 50.000 0.42 0.00 0.00 2.90
4836 6328 4.432712 CACATCACATCGGATCTGTACAA 58.567 43.478 0.42 0.00 0.00 2.41
4839 6331 5.582269 ACATCACATCGGATCTGTACAAAAG 59.418 40.000 0.42 0.00 0.00 2.27
4849 6341 6.018425 CGGATCTGTACAAAAGATGGATGAAG 60.018 42.308 0.00 0.00 34.50 3.02
4850 6342 6.261826 GGATCTGTACAAAAGATGGATGAAGG 59.738 42.308 0.00 0.00 34.50 3.46
4866 6358 0.183492 AAGGAGCTGCACTTGGAACA 59.817 50.000 8.35 0.00 0.00 3.18
4868 6360 1.202976 AGGAGCTGCACTTGGAACATT 60.203 47.619 8.35 0.00 39.30 2.71
4870 6362 0.963962 AGCTGCACTTGGAACATTGG 59.036 50.000 1.02 0.00 39.30 3.16
4871 6363 0.668401 GCTGCACTTGGAACATTGGC 60.668 55.000 0.00 0.00 39.30 4.52
4872 6364 0.963962 CTGCACTTGGAACATTGGCT 59.036 50.000 0.00 0.00 39.30 4.75
4873 6365 0.961019 TGCACTTGGAACATTGGCTC 59.039 50.000 0.00 0.00 39.30 4.70
4893 6387 1.302993 GCCGGCCACTTACTCCAAA 60.303 57.895 18.11 0.00 0.00 3.28
4894 6388 1.305930 GCCGGCCACTTACTCCAAAG 61.306 60.000 18.11 0.00 0.00 2.77
4895 6389 0.036306 CCGGCCACTTACTCCAAAGT 59.964 55.000 2.24 0.00 40.33 2.66
4896 6390 1.439679 CGGCCACTTACTCCAAAGTC 58.560 55.000 2.24 0.00 37.61 3.01
4897 6391 1.822506 GGCCACTTACTCCAAAGTCC 58.177 55.000 0.00 0.00 37.61 3.85
4898 6392 1.073284 GGCCACTTACTCCAAAGTCCA 59.927 52.381 0.00 0.00 37.61 4.02
4899 6393 2.488347 GGCCACTTACTCCAAAGTCCAA 60.488 50.000 0.00 0.00 37.61 3.53
4916 6410 2.373169 TCCAAACCAACTGCTCTGAGAT 59.627 45.455 9.28 0.00 0.00 2.75
4917 6411 3.582647 TCCAAACCAACTGCTCTGAGATA 59.417 43.478 9.28 0.00 0.00 1.98
4939 6433 9.624373 AGATATGCATGTTCAATCTAACTTTCT 57.376 29.630 10.16 0.00 0.00 2.52
5039 6533 0.391263 GAGTTGACGACCCATGACCC 60.391 60.000 0.00 0.00 0.00 4.46
5040 6534 1.125093 AGTTGACGACCCATGACCCA 61.125 55.000 0.00 0.00 0.00 4.51
5041 6535 0.673644 GTTGACGACCCATGACCCAG 60.674 60.000 0.00 0.00 0.00 4.45
5042 6536 2.125106 GACGACCCATGACCCAGC 60.125 66.667 0.00 0.00 0.00 4.85
5043 6537 2.607750 ACGACCCATGACCCAGCT 60.608 61.111 0.00 0.00 0.00 4.24
5048 6542 2.124403 CCATGACCCAGCTCAGCC 60.124 66.667 0.00 0.00 0.00 4.85
5055 6549 2.815945 CCCAGCTCAGCCCATCGAT 61.816 63.158 0.00 0.00 0.00 3.59
5065 6559 1.529948 CCCATCGATGGCCATGCTT 60.530 57.895 34.77 0.00 46.70 3.91
5110 6604 1.731160 CTGACAGCAAAGCTCAGCTAC 59.269 52.381 0.00 10.00 38.25 3.58
5151 6649 4.572571 ACGTTTGCCGCCCTGGAA 62.573 61.111 0.00 0.00 42.00 3.53
5152 6650 3.061848 CGTTTGCCGCCCTGGAAT 61.062 61.111 0.00 0.00 42.00 3.01
5153 6651 2.635443 CGTTTGCCGCCCTGGAATT 61.635 57.895 0.00 0.00 42.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.106986 AACTCACGGCAGCAGTGGT 62.107 57.895 23.39 17.14 39.86 4.16
32 33 1.159713 TTCAACTCACGGCAGCAGTG 61.160 55.000 18.72 18.72 40.71 3.66
197 201 2.164827 GGGAGAAACGTGGTTTTTGTGT 59.835 45.455 0.00 0.00 35.77 3.72
391 419 0.108585 CGGGAGAGGGAGAGAGAGAG 59.891 65.000 0.00 0.00 0.00 3.20
392 420 0.622154 ACGGGAGAGGGAGAGAGAGA 60.622 60.000 0.00 0.00 0.00 3.10
393 421 0.179029 GACGGGAGAGGGAGAGAGAG 60.179 65.000 0.00 0.00 0.00 3.20
394 422 1.637724 GGACGGGAGAGGGAGAGAGA 61.638 65.000 0.00 0.00 0.00 3.10
395 423 1.152839 GGACGGGAGAGGGAGAGAG 60.153 68.421 0.00 0.00 0.00 3.20
396 424 0.327287 TAGGACGGGAGAGGGAGAGA 60.327 60.000 0.00 0.00 0.00 3.10
397 425 0.774908 ATAGGACGGGAGAGGGAGAG 59.225 60.000 0.00 0.00 0.00 3.20
398 426 2.129200 TATAGGACGGGAGAGGGAGA 57.871 55.000 0.00 0.00 0.00 3.71
399 427 4.799715 ATATATAGGACGGGAGAGGGAG 57.200 50.000 0.00 0.00 0.00 4.30
400 428 4.414846 GGTATATATAGGACGGGAGAGGGA 59.585 50.000 0.00 0.00 0.00 4.20
401 429 4.447470 GGGTATATATAGGACGGGAGAGGG 60.447 54.167 0.00 0.00 0.00 4.30
402 430 4.447470 GGGGTATATATAGGACGGGAGAGG 60.447 54.167 0.00 0.00 0.00 3.69
403 431 4.416179 AGGGGTATATATAGGACGGGAGAG 59.584 50.000 0.00 0.00 0.00 3.20
404 432 4.167502 CAGGGGTATATATAGGACGGGAGA 59.832 50.000 0.00 0.00 0.00 3.71
439 467 2.348971 GGCTGCTTAACTCTTCGCTTAC 59.651 50.000 0.00 0.00 0.00 2.34
441 469 1.443802 GGCTGCTTAACTCTTCGCTT 58.556 50.000 0.00 0.00 0.00 4.68
470 498 0.249911 ACGAACTGGAGCTGTGGAAC 60.250 55.000 0.00 0.00 37.35 3.62
555 586 2.547007 GGATCGAGAAGCTAGGAAAGGC 60.547 54.545 0.00 0.00 0.00 4.35
600 631 3.124636 CCATTAAACACGGTGACTAGCAC 59.875 47.826 16.29 8.31 46.98 4.40
671 710 2.427245 CCGATGGCGAGAGGAAGGT 61.427 63.158 0.00 0.00 40.82 3.50
728 767 1.337260 GGAATGCTACGGATGAGCGAT 60.337 52.381 0.00 0.00 43.19 4.58
732 771 2.037641 TCATGGGAATGCTACGGATGAG 59.962 50.000 0.00 0.00 0.00 2.90
733 772 2.037641 CTCATGGGAATGCTACGGATGA 59.962 50.000 0.00 0.00 0.00 2.92
857 905 0.512952 GCAAAGCAGACGAACACGAT 59.487 50.000 0.00 0.00 0.00 3.73
1074 1148 3.081409 ACGTAGCAGCCCGGGATT 61.081 61.111 29.31 6.37 0.00 3.01
1362 1439 1.497722 GTTGGCGTACTGCTGCTTC 59.502 57.895 0.00 0.00 45.43 3.86
1541 1618 1.767759 AATCAAAAGGCGGGGATCAG 58.232 50.000 0.00 0.00 0.00 2.90
1568 1830 5.205056 AGTACTAGTAGCCAGCAAGAATCT 58.795 41.667 1.87 0.00 0.00 2.40
1576 1838 2.094182 TGTGCAAGTACTAGTAGCCAGC 60.094 50.000 1.87 6.26 0.00 4.85
1657 1935 2.651455 TCTAGTGGGATCAATCGTCGT 58.349 47.619 0.00 0.00 0.00 4.34
1662 1940 7.630242 TGTCAAATTTCTAGTGGGATCAATC 57.370 36.000 0.00 0.00 0.00 2.67
1671 1949 7.706179 ACAATGGTGTTTGTCAAATTTCTAGTG 59.294 33.333 0.40 5.70 34.83 2.74
1751 2068 5.498393 ACGGAGAGAGTACAAGATACTGAA 58.502 41.667 0.00 0.00 0.00 3.02
1768 2085 1.856629 AAAGTATTCCCGGACGGAGA 58.143 50.000 13.13 5.10 43.39 3.71
1771 2088 2.389962 TGAAAAGTATTCCCGGACGG 57.610 50.000 0.73 3.25 0.00 4.79
1772 2089 3.936453 TCAATGAAAAGTATTCCCGGACG 59.064 43.478 0.73 0.00 0.00 4.79
1773 2090 5.890424 TTCAATGAAAAGTATTCCCGGAC 57.110 39.130 0.73 0.00 0.00 4.79
1775 2092 6.042143 CCATTTCAATGAAAAGTATTCCCGG 58.958 40.000 12.75 0.00 38.70 5.73
1776 2093 6.862209 TCCATTTCAATGAAAAGTATTCCCG 58.138 36.000 12.75 0.00 38.70 5.14
1777 2094 8.260114 ACATCCATTTCAATGAAAAGTATTCCC 58.740 33.333 12.75 0.00 38.70 3.97
1819 2136 9.699410 TGGATGAAAATGGATGTATCTAAAACT 57.301 29.630 0.00 0.00 0.00 2.66
1825 2142 9.204337 TCAAAATGGATGAAAATGGATGTATCT 57.796 29.630 0.00 0.00 0.00 1.98
1826 2143 9.991906 ATCAAAATGGATGAAAATGGATGTATC 57.008 29.630 0.00 0.00 0.00 2.24
1827 2144 9.772973 CATCAAAATGGATGAAAATGGATGTAT 57.227 29.630 0.00 0.00 46.00 2.29
1840 2157 8.800972 CGAAATTACTTGTCATCAAAATGGATG 58.199 33.333 0.00 0.00 44.78 3.51
1841 2158 7.975616 CCGAAATTACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
1842 2159 7.175816 TCCGAAATTACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
1843 2160 7.273381 GTCCGAAATTACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
1844 2161 7.007367 CGTCCGAAATTACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1845 2162 7.021196 CGTCCGAAATTACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1846 2163 6.367421 CGTCCGAAATTACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1847 2164 5.106869 CCGTCCGAAATTACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1848 2165 4.390603 CCGTCCGAAATTACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1849 2166 3.930229 CCGTCCGAAATTACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1850 2167 4.178540 TCCGTCCGAAATTACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1851 2168 4.181578 CTCCGTCCGAAATTACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1852 2169 3.581755 CTCCGTCCGAAATTACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1853 2170 2.928116 CCTCCGTCCGAAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1854 2171 2.354403 CCCTCCGTCCGAAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1855 2172 2.093869 TCCCTCCGTCCGAAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1856 2173 2.167900 CTCCCTCCGTCCGAAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1857 2174 1.755380 CTCCCTCCGTCCGAAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1858 2175 1.479730 ACTCCCTCCGTCCGAAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1859 2176 1.856629 ACTCCCTCCGTCCGAAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1860 2177 1.479730 GTACTCCCTCCGTCCGAAATT 59.520 52.381 0.00 0.00 0.00 1.82
1861 2178 1.109609 GTACTCCCTCCGTCCGAAAT 58.890 55.000 0.00 0.00 0.00 2.17
1862 2179 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
1863 2180 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1864 2181 0.911769 TAAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1865 2182 1.755179 TTAAGTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
1866 2183 4.321824 GCATATTAAGTACTCCCTCCGTCC 60.322 50.000 0.00 0.00 0.00 4.79
1867 2184 4.280174 TGCATATTAAGTACTCCCTCCGTC 59.720 45.833 0.00 0.00 0.00 4.79
1868 2185 4.220724 TGCATATTAAGTACTCCCTCCGT 58.779 43.478 0.00 0.00 0.00 4.69
1869 2186 4.866508 TGCATATTAAGTACTCCCTCCG 57.133 45.455 0.00 0.00 0.00 4.63
1870 2187 7.397761 AGTCTATGCATATTAAGTACTCCCTCC 59.602 40.741 6.92 0.00 0.00 4.30
1871 2188 8.247562 CAGTCTATGCATATTAAGTACTCCCTC 58.752 40.741 6.92 0.00 0.00 4.30
1872 2189 7.179338 CCAGTCTATGCATATTAAGTACTCCCT 59.821 40.741 6.92 0.00 0.00 4.20
1873 2190 7.178628 TCCAGTCTATGCATATTAAGTACTCCC 59.821 40.741 6.92 0.00 0.00 4.30
1874 2191 8.030106 GTCCAGTCTATGCATATTAAGTACTCC 58.970 40.741 6.92 0.00 0.00 3.85
1875 2192 8.798402 AGTCCAGTCTATGCATATTAAGTACTC 58.202 37.037 6.92 0.00 0.00 2.59
1876 2193 8.713708 AGTCCAGTCTATGCATATTAAGTACT 57.286 34.615 6.92 5.15 0.00 2.73
1895 2212 8.985805 ACGAAAGTGTAGTAATTTTAAGTCCAG 58.014 33.333 0.00 0.00 46.97 3.86
1964 2281 3.569701 ACAACTCTGGCCACTATTTTGTG 59.430 43.478 0.00 0.00 37.66 3.33
2051 2368 5.710567 GGCTTGTAACTAATTTCAAGGGAGT 59.289 40.000 5.60 0.00 41.25 3.85
2070 2387 2.898920 ATCCCGTCATGGCTGGCTTG 62.899 60.000 2.34 10.36 35.87 4.01
2089 2406 1.717032 AATCCCCCGATGAGAATCGA 58.283 50.000 9.56 0.00 46.12 3.59
2090 2407 2.550830 AAATCCCCCGATGAGAATCG 57.449 50.000 1.19 1.19 43.15 3.34
2091 2408 7.665974 ACTTAATTAAATCCCCCGATGAGAATC 59.334 37.037 0.00 0.00 0.00 2.52
2092 2409 7.526918 ACTTAATTAAATCCCCCGATGAGAAT 58.473 34.615 0.00 0.00 0.00 2.40
2093 2410 6.906848 ACTTAATTAAATCCCCCGATGAGAA 58.093 36.000 0.00 0.00 0.00 2.87
2094 2411 6.100569 TGACTTAATTAAATCCCCCGATGAGA 59.899 38.462 4.33 0.00 0.00 3.27
2095 2412 6.296026 TGACTTAATTAAATCCCCCGATGAG 58.704 40.000 4.33 0.00 0.00 2.90
2096 2413 6.255294 TGACTTAATTAAATCCCCCGATGA 57.745 37.500 4.33 0.00 0.00 2.92
2097 2414 6.952773 TTGACTTAATTAAATCCCCCGATG 57.047 37.500 4.33 0.00 0.00 3.84
2098 2415 7.618117 ACTTTTGACTTAATTAAATCCCCCGAT 59.382 33.333 4.33 0.00 0.00 4.18
2099 2416 6.949463 ACTTTTGACTTAATTAAATCCCCCGA 59.051 34.615 4.33 0.00 0.00 5.14
2100 2417 7.122204 AGACTTTTGACTTAATTAAATCCCCCG 59.878 37.037 4.33 0.00 0.00 5.73
2101 2418 8.362464 AGACTTTTGACTTAATTAAATCCCCC 57.638 34.615 4.33 0.00 0.00 5.40
2103 2420 9.983804 CGTAGACTTTTGACTTAATTAAATCCC 57.016 33.333 4.33 0.00 0.00 3.85
2122 2439 9.810870 AAGGGAAATTCTAGTATATCGTAGACT 57.189 33.333 0.00 0.00 42.51 3.24
2153 2470 7.374975 TGGATCGAAGGGAGTATATCTTTTT 57.625 36.000 0.00 0.00 0.00 1.94
2156 2473 8.846423 ATTATGGATCGAAGGGAGTATATCTT 57.154 34.615 0.00 0.00 0.00 2.40
2157 2474 9.937876 TTATTATGGATCGAAGGGAGTATATCT 57.062 33.333 0.00 0.00 0.00 1.98
2165 2569 6.014925 TCGACAATTATTATGGATCGAAGGGA 60.015 38.462 0.00 0.00 34.47 4.20
2166 2570 6.163476 TCGACAATTATTATGGATCGAAGGG 58.837 40.000 0.00 0.00 34.47 3.95
2171 2575 6.968131 ACCATCGACAATTATTATGGATCG 57.032 37.500 10.43 1.47 39.60 3.69
2180 2584 9.444600 AAGTTGTACTAAACCATCGACAATTAT 57.555 29.630 0.00 0.00 0.00 1.28
2200 2604 9.574516 AACAGATTCTGGTAATCTTAAAGTTGT 57.425 29.630 17.66 0.00 34.96 3.32
2202 2606 9.232473 GGAACAGATTCTGGTAATCTTAAAGTT 57.768 33.333 17.66 0.00 34.96 2.66
2203 2607 8.606830 AGGAACAGATTCTGGTAATCTTAAAGT 58.393 33.333 17.66 0.00 34.96 2.66
2204 2608 8.887717 CAGGAACAGATTCTGGTAATCTTAAAG 58.112 37.037 17.66 0.00 34.96 1.85
2206 2610 7.037586 ACCAGGAACAGATTCTGGTAATCTTAA 60.038 37.037 17.66 0.00 41.06 1.85
2207 2611 6.443849 ACCAGGAACAGATTCTGGTAATCTTA 59.556 38.462 17.66 0.00 41.06 2.10
2208 2612 5.251700 ACCAGGAACAGATTCTGGTAATCTT 59.748 40.000 17.66 1.93 41.06 2.40
2209 2613 4.785376 ACCAGGAACAGATTCTGGTAATCT 59.215 41.667 17.66 7.16 41.06 2.40
2212 2664 3.907474 TCACCAGGAACAGATTCTGGTAA 59.093 43.478 17.66 0.00 40.98 2.85
2222 2674 4.036262 TCGTTCAATTTTCACCAGGAACAG 59.964 41.667 0.00 0.00 35.56 3.16
2223 2675 3.948473 TCGTTCAATTTTCACCAGGAACA 59.052 39.130 0.00 0.00 35.56 3.18
2232 2684 3.374367 TGTTGACCGTCGTTCAATTTTCA 59.626 39.130 8.52 0.00 0.00 2.69
2235 2687 3.562141 TCATGTTGACCGTCGTTCAATTT 59.438 39.130 8.52 0.00 0.00 1.82
2243 2695 2.347452 GGTATGTTCATGTTGACCGTCG 59.653 50.000 0.00 0.00 0.00 5.12
2245 2697 3.071479 GTGGTATGTTCATGTTGACCGT 58.929 45.455 0.00 0.00 0.00 4.83
2247 2699 4.518970 AGTTGTGGTATGTTCATGTTGACC 59.481 41.667 0.00 0.00 0.00 4.02
2248 2700 5.334879 GGAGTTGTGGTATGTTCATGTTGAC 60.335 44.000 0.00 0.00 0.00 3.18
2263 2715 0.324943 CAGTGGTAGGGGAGTTGTGG 59.675 60.000 0.00 0.00 0.00 4.17
2312 2768 9.997172 TCACTCCACCTCATATACATATTCTAT 57.003 33.333 0.00 0.00 0.00 1.98
2330 2786 4.576128 GGTGGGTGGTATGTCACTCCAC 62.576 59.091 19.94 19.94 46.36 4.02
2348 2804 8.731275 TGAGTTAGTAATATTTGGACATGGTG 57.269 34.615 0.00 0.00 0.00 4.17
2349 2805 9.920946 ATTGAGTTAGTAATATTTGGACATGGT 57.079 29.630 0.00 0.00 0.00 3.55
2365 2821 9.003658 CATAAGTTTTGTGGAGATTGAGTTAGT 57.996 33.333 0.00 0.00 0.00 2.24
2397 2855 4.638421 TCTCATATTTAACCTGGCCAAACG 59.362 41.667 7.01 0.00 0.00 3.60
2398 2856 6.071616 TGTTCTCATATTTAACCTGGCCAAAC 60.072 38.462 7.01 3.39 0.00 2.93
2404 2862 8.964476 ATGTACTGTTCTCATATTTAACCTGG 57.036 34.615 0.00 0.00 0.00 4.45
2461 2919 9.318041 CAATACTTTCTTTTTCACGTCTACATG 57.682 33.333 0.00 0.00 0.00 3.21
2471 2929 6.744112 ACCGCAATCAATACTTTCTTTTTCA 58.256 32.000 0.00 0.00 0.00 2.69
2478 2936 6.119144 ACATGTACCGCAATCAATACTTTC 57.881 37.500 0.00 0.00 0.00 2.62
2480 2938 6.479001 GTCTACATGTACCGCAATCAATACTT 59.521 38.462 0.08 0.00 0.00 2.24
2490 2949 3.376234 GTCTACTGTCTACATGTACCGCA 59.624 47.826 0.08 0.71 0.00 5.69
2496 2955 6.017275 GGCTATTACGTCTACTGTCTACATGT 60.017 42.308 2.69 2.69 0.00 3.21
2499 2958 5.430886 TGGCTATTACGTCTACTGTCTACA 58.569 41.667 0.00 0.00 0.00 2.74
2500 2959 5.998454 TGGCTATTACGTCTACTGTCTAC 57.002 43.478 0.00 0.00 0.00 2.59
2671 3459 2.803492 GCAGGCTTGGAATAGTAGTCGG 60.803 54.545 0.00 0.00 0.00 4.79
2743 3534 3.121944 CAGTGATTCTGCACGTGTAGAAC 59.878 47.826 39.47 31.91 46.57 3.01
2836 3774 6.308371 ACACACACATGCATACATATCATG 57.692 37.500 0.00 0.00 42.27 3.07
2837 3775 6.947644 AACACACACATGCATACATATCAT 57.052 33.333 0.00 0.00 33.67 2.45
2957 4338 1.215647 CGAACTCCTCCTGGAACCG 59.784 63.158 0.00 0.00 42.66 4.44
3206 4587 6.849502 ACTAATCATACGTACGATGGGTATG 58.150 40.000 24.41 17.84 42.95 2.39
3211 4594 4.852104 GCAGACTAATCATACGTACGATGG 59.148 45.833 24.41 10.24 0.00 3.51
3257 4640 2.066262 CCGAACGGCACATGGATATAC 58.934 52.381 0.00 0.00 0.00 1.47
3259 4642 3.305709 CCGAACGGCACATGGATAT 57.694 52.632 0.00 0.00 0.00 1.63
3293 4676 1.209640 GAGATACGTCCGATCGGCC 59.790 63.158 29.62 18.36 34.68 6.13
3423 4815 3.521947 AGGGAGTATAATAATCGGCGC 57.478 47.619 0.00 0.00 0.00 6.53
3437 4829 9.544579 AGTTCTAGTAAAACTGTATTAGGGAGT 57.455 33.333 0.00 0.00 35.68 3.85
3439 4831 9.537852 TGAGTTCTAGTAAAACTGTATTAGGGA 57.462 33.333 0.00 0.00 37.10 4.20
3497 4889 9.720769 TGGGTTGTATTTGTTCTTGTTTTAAAA 57.279 25.926 0.00 0.00 0.00 1.52
3498 4890 9.152595 GTGGGTTGTATTTGTTCTTGTTTTAAA 57.847 29.630 0.00 0.00 0.00 1.52
3499 4891 7.488471 CGTGGGTTGTATTTGTTCTTGTTTTAA 59.512 33.333 0.00 0.00 0.00 1.52
3500 4892 6.973474 CGTGGGTTGTATTTGTTCTTGTTTTA 59.027 34.615 0.00 0.00 0.00 1.52
3501 4893 5.808030 CGTGGGTTGTATTTGTTCTTGTTTT 59.192 36.000 0.00 0.00 0.00 2.43
3502 4894 5.105675 ACGTGGGTTGTATTTGTTCTTGTTT 60.106 36.000 0.00 0.00 0.00 2.83
3503 4895 4.399934 ACGTGGGTTGTATTTGTTCTTGTT 59.600 37.500 0.00 0.00 0.00 2.83
3504 4896 3.949113 ACGTGGGTTGTATTTGTTCTTGT 59.051 39.130 0.00 0.00 0.00 3.16
3505 4897 4.035792 TGACGTGGGTTGTATTTGTTCTTG 59.964 41.667 0.00 0.00 0.00 3.02
3506 4898 4.200874 TGACGTGGGTTGTATTTGTTCTT 58.799 39.130 0.00 0.00 0.00 2.52
3507 4899 3.811083 TGACGTGGGTTGTATTTGTTCT 58.189 40.909 0.00 0.00 0.00 3.01
3508 4900 3.608474 GCTGACGTGGGTTGTATTTGTTC 60.608 47.826 0.00 0.00 0.00 3.18
3509 4901 2.292292 GCTGACGTGGGTTGTATTTGTT 59.708 45.455 0.00 0.00 0.00 2.83
3510 4902 1.877443 GCTGACGTGGGTTGTATTTGT 59.123 47.619 0.00 0.00 0.00 2.83
3511 4903 1.876799 TGCTGACGTGGGTTGTATTTG 59.123 47.619 0.00 0.00 0.00 2.32
3512 4904 2.264005 TGCTGACGTGGGTTGTATTT 57.736 45.000 0.00 0.00 0.00 1.40
3513 4905 2.489938 ATGCTGACGTGGGTTGTATT 57.510 45.000 0.00 0.00 0.00 1.89
3514 4906 2.235155 TGTATGCTGACGTGGGTTGTAT 59.765 45.455 0.00 0.00 0.00 2.29
3515 4907 1.619332 TGTATGCTGACGTGGGTTGTA 59.381 47.619 0.00 0.00 0.00 2.41
3516 4908 0.394938 TGTATGCTGACGTGGGTTGT 59.605 50.000 0.00 0.00 0.00 3.32
3517 4909 0.796312 GTGTATGCTGACGTGGGTTG 59.204 55.000 0.00 0.00 0.00 3.77
3518 4910 0.669318 CGTGTATGCTGACGTGGGTT 60.669 55.000 0.00 0.00 0.00 4.11
3519 4911 1.080093 CGTGTATGCTGACGTGGGT 60.080 57.895 0.00 0.00 0.00 4.51
3520 4912 2.452813 GCGTGTATGCTGACGTGGG 61.453 63.158 0.00 0.00 37.89 4.61
3521 4913 1.083806 ATGCGTGTATGCTGACGTGG 61.084 55.000 0.00 0.00 37.89 4.94
3522 4914 0.298707 GATGCGTGTATGCTGACGTG 59.701 55.000 0.00 0.00 37.89 4.49
3523 4915 0.173481 AGATGCGTGTATGCTGACGT 59.827 50.000 0.00 0.00 37.89 4.34
3524 4916 1.280982 AAGATGCGTGTATGCTGACG 58.719 50.000 0.00 0.00 38.63 4.35
3525 4917 4.090642 GCTATAAGATGCGTGTATGCTGAC 59.909 45.833 0.00 0.00 35.36 3.51
3526 4918 4.237724 GCTATAAGATGCGTGTATGCTGA 58.762 43.478 0.00 0.00 35.36 4.26
3527 4919 3.989817 TGCTATAAGATGCGTGTATGCTG 59.010 43.478 0.00 0.00 35.36 4.41
3528 4920 4.257267 TGCTATAAGATGCGTGTATGCT 57.743 40.909 0.00 0.00 35.36 3.79
3529 4921 4.627035 TGATGCTATAAGATGCGTGTATGC 59.373 41.667 0.00 0.00 0.00 3.14
3530 4922 5.634859 TGTGATGCTATAAGATGCGTGTATG 59.365 40.000 0.00 0.00 0.00 2.39
3531 4923 5.783111 TGTGATGCTATAAGATGCGTGTAT 58.217 37.500 0.00 0.00 0.00 2.29
3532 4924 5.195001 TGTGATGCTATAAGATGCGTGTA 57.805 39.130 0.00 0.00 0.00 2.90
3533 4925 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
3534 4926 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
3535 4927 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
3536 4928 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
3537 4929 6.373495 TCATTGGATGTGATGCTATAAGATGC 59.627 38.462 0.00 0.00 0.00 3.91
3538 4930 7.916914 TCATTGGATGTGATGCTATAAGATG 57.083 36.000 0.00 0.00 0.00 2.90
3546 4938 8.582437 CCTTTTATAATCATTGGATGTGATGCT 58.418 33.333 0.00 0.00 36.49 3.79
3547 4939 8.362639 ACCTTTTATAATCATTGGATGTGATGC 58.637 33.333 0.00 0.00 36.49 3.91
3548 4940 9.687210 CACCTTTTATAATCATTGGATGTGATG 57.313 33.333 0.00 0.00 36.49 3.07
3549 4941 9.645128 TCACCTTTTATAATCATTGGATGTGAT 57.355 29.630 0.00 0.00 37.91 3.06
3550 4942 9.473007 TTCACCTTTTATAATCATTGGATGTGA 57.527 29.630 0.00 0.00 32.92 3.58
3555 4947 9.919416 TCTCATTCACCTTTTATAATCATTGGA 57.081 29.630 0.00 0.00 0.00 3.53
3594 4986 8.939929 CAGTTTTGCTAGAACTCATTTAGATGA 58.060 33.333 0.00 0.00 39.92 2.92
3595 4987 8.725148 ACAGTTTTGCTAGAACTCATTTAGATG 58.275 33.333 0.00 0.00 35.26 2.90
3596 4988 8.854614 ACAGTTTTGCTAGAACTCATTTAGAT 57.145 30.769 0.00 0.00 35.26 1.98
3597 4989 9.944376 ATACAGTTTTGCTAGAACTCATTTAGA 57.056 29.630 0.00 0.00 35.26 2.10
3611 5003 9.632638 ATGGAGTGATTATAATACAGTTTTGCT 57.367 29.630 0.00 0.00 0.00 3.91
3616 5008 9.706691 CCGTAATGGAGTGATTATAATACAGTT 57.293 33.333 0.00 0.00 42.00 3.16
3617 5009 7.817962 GCCGTAATGGAGTGATTATAATACAGT 59.182 37.037 0.00 2.03 42.00 3.55
3618 5010 7.817478 TGCCGTAATGGAGTGATTATAATACAG 59.183 37.037 0.00 0.00 42.00 2.74
3619 5011 7.601130 GTGCCGTAATGGAGTGATTATAATACA 59.399 37.037 0.00 0.00 42.00 2.29
3620 5012 7.817962 AGTGCCGTAATGGAGTGATTATAATAC 59.182 37.037 0.00 0.00 42.00 1.89
3621 5013 7.817478 CAGTGCCGTAATGGAGTGATTATAATA 59.183 37.037 0.00 0.00 42.00 0.98
3622 5014 6.650807 CAGTGCCGTAATGGAGTGATTATAAT 59.349 38.462 0.00 0.00 42.00 1.28
3623 5015 5.989168 CAGTGCCGTAATGGAGTGATTATAA 59.011 40.000 0.00 0.00 42.00 0.98
3624 5016 5.538118 CAGTGCCGTAATGGAGTGATTATA 58.462 41.667 0.00 0.00 42.00 0.98
3625 5017 4.380531 CAGTGCCGTAATGGAGTGATTAT 58.619 43.478 0.00 0.00 42.00 1.28
3626 5018 3.792401 CAGTGCCGTAATGGAGTGATTA 58.208 45.455 0.00 0.00 42.00 1.75
3627 5019 2.632377 CAGTGCCGTAATGGAGTGATT 58.368 47.619 0.00 0.00 42.00 2.57
3675 5067 2.036098 TCCGAGGGAGGCACGTAA 59.964 61.111 0.00 0.00 0.00 3.18
3681 5073 2.124403 TCTACGTCCGAGGGAGGC 60.124 66.667 0.00 0.00 40.79 4.70
3694 5086 2.611292 GCCAGAACATGCATGAGTCTAC 59.389 50.000 32.75 21.57 0.00 2.59
3697 5089 0.737219 GGCCAGAACATGCATGAGTC 59.263 55.000 32.75 25.60 0.00 3.36
3737 5129 3.884169 TGTTGTTCGGTACTACGTACAC 58.116 45.455 6.51 0.00 42.38 2.90
3827 5225 1.746787 GTTCATGGCTCATGCACATCA 59.253 47.619 11.13 0.00 41.18 3.07
3828 5226 1.268386 CGTTCATGGCTCATGCACATC 60.268 52.381 14.54 3.62 37.74 3.06
3829 5227 0.736636 CGTTCATGGCTCATGCACAT 59.263 50.000 14.54 0.00 37.74 3.21
3830 5228 0.321475 TCGTTCATGGCTCATGCACA 60.321 50.000 14.54 0.00 37.74 4.57
3831 5229 1.019673 ATCGTTCATGGCTCATGCAC 58.980 50.000 9.54 8.48 41.18 4.57
3832 5230 2.212652 GTATCGTTCATGGCTCATGCA 58.787 47.619 9.54 0.00 41.18 3.96
3833 5231 2.212652 TGTATCGTTCATGGCTCATGC 58.787 47.619 9.54 0.00 41.18 4.06
3834 5232 4.319984 CCAATGTATCGTTCATGGCTCATG 60.320 45.833 8.41 8.41 42.60 3.07
3835 5233 3.817084 CCAATGTATCGTTCATGGCTCAT 59.183 43.478 0.00 0.00 0.00 2.90
3851 5249 4.967084 TGTAGGTTACTGACACCAATGT 57.033 40.909 3.46 0.00 43.71 2.71
3855 5253 4.714802 AGCATATGTAGGTTACTGACACCA 59.285 41.667 4.29 0.00 36.67 4.17
3856 5254 5.050490 CAGCATATGTAGGTTACTGACACC 58.950 45.833 4.29 0.00 34.06 4.16
3857 5255 4.508124 GCAGCATATGTAGGTTACTGACAC 59.492 45.833 4.29 0.00 0.00 3.67
3868 5291 3.924918 AGTACGGAGCAGCATATGTAG 57.075 47.619 4.29 0.00 0.00 2.74
3871 5294 2.826428 ACAAGTACGGAGCAGCATATG 58.174 47.619 0.00 0.00 0.00 1.78
3890 5313 3.496130 GCTCATGATGTACTGGCACATAC 59.504 47.826 0.00 0.00 39.25 2.39
3943 5366 3.937706 ACTGAGTTGCTCAATATCTGCAC 59.062 43.478 0.37 0.00 40.18 4.57
4219 5668 4.142816 GCCATCAGATTAATCATACACGCC 60.143 45.833 17.56 0.00 0.00 5.68
4322 5771 8.941995 ACACATATCATACAGGACATACTACT 57.058 34.615 0.00 0.00 0.00 2.57
4357 5806 8.165239 TGCATAGCATATCGTCCTTTAATTTT 57.835 30.769 0.00 0.00 31.71 1.82
4405 5857 8.331740 AGAAAGAAGGTGATAGATTGGATCAAA 58.668 33.333 0.00 0.00 35.15 2.69
4413 5865 8.947115 CGGTTTTTAGAAAGAAGGTGATAGATT 58.053 33.333 0.00 0.00 0.00 2.40
4495 5947 4.944962 TGCATGGAAAGCGCATATATAC 57.055 40.909 11.47 0.00 33.85 1.47
4607 6071 9.906660 ACGAAGCAAAATGAATAAATCTAAACA 57.093 25.926 0.00 0.00 0.00 2.83
4616 6080 9.982291 GAACTACATACGAAGCAAAATGAATAA 57.018 29.630 0.00 0.00 0.00 1.40
4617 6081 9.157104 TGAACTACATACGAAGCAAAATGAATA 57.843 29.630 0.00 0.00 0.00 1.75
4618 6082 7.962918 GTGAACTACATACGAAGCAAAATGAAT 59.037 33.333 0.00 0.00 0.00 2.57
4619 6083 7.295201 GTGAACTACATACGAAGCAAAATGAA 58.705 34.615 0.00 0.00 0.00 2.57
4620 6084 6.128391 GGTGAACTACATACGAAGCAAAATGA 60.128 38.462 0.00 0.00 0.00 2.57
4621 6085 6.021596 GGTGAACTACATACGAAGCAAAATG 58.978 40.000 0.00 0.00 0.00 2.32
4622 6086 5.938125 AGGTGAACTACATACGAAGCAAAAT 59.062 36.000 0.00 0.00 0.00 1.82
4623 6087 5.302360 AGGTGAACTACATACGAAGCAAAA 58.698 37.500 0.00 0.00 0.00 2.44
4624 6088 4.890088 AGGTGAACTACATACGAAGCAAA 58.110 39.130 0.00 0.00 0.00 3.68
4625 6089 4.530710 AGGTGAACTACATACGAAGCAA 57.469 40.909 0.00 0.00 0.00 3.91
4626 6090 4.703575 ACTAGGTGAACTACATACGAAGCA 59.296 41.667 0.00 0.00 0.00 3.91
4627 6091 5.035443 CACTAGGTGAACTACATACGAAGC 58.965 45.833 0.00 0.00 35.23 3.86
4628 6092 6.432607 TCACTAGGTGAACTACATACGAAG 57.567 41.667 0.00 0.00 39.78 3.79
4629 6093 6.822667 TTCACTAGGTGAACTACATACGAA 57.177 37.500 8.75 0.00 45.88 3.85
4641 6105 9.702253 AGTCTTTATAGAGATTTCACTAGGTGA 57.298 33.333 0.00 0.00 41.09 4.02
4660 6124 9.425248 TCCTCCGTTCCTAAATATAAGTCTTTA 57.575 33.333 0.00 0.00 0.00 1.85
4661 6125 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
4662 6126 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
4663 6127 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
4664 6128 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
4665 6129 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
4666 6130 8.858094 AGTACTTCCTCCGTTCCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
4667 6131 8.773033 AGTACTTCCTCCGTTCCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
4668 6132 9.289782 GTAGTACTTCCTCCGTTCCTAAATATA 57.710 37.037 0.00 0.00 0.00 0.86
4669 6133 7.040823 CGTAGTACTTCCTCCGTTCCTAAATAT 60.041 40.741 0.00 0.00 0.00 1.28
4670 6134 6.260936 CGTAGTACTTCCTCCGTTCCTAAATA 59.739 42.308 0.00 0.00 0.00 1.40
4671 6135 5.067023 CGTAGTACTTCCTCCGTTCCTAAAT 59.933 44.000 0.00 0.00 0.00 1.40
4672 6136 4.396166 CGTAGTACTTCCTCCGTTCCTAAA 59.604 45.833 0.00 0.00 0.00 1.85
4673 6137 3.941483 CGTAGTACTTCCTCCGTTCCTAA 59.059 47.826 0.00 0.00 0.00 2.69
4674 6138 3.197766 TCGTAGTACTTCCTCCGTTCCTA 59.802 47.826 0.00 0.00 0.00 2.94
4675 6139 2.026822 TCGTAGTACTTCCTCCGTTCCT 60.027 50.000 0.00 0.00 0.00 3.36
4676 6140 2.359900 TCGTAGTACTTCCTCCGTTCC 58.640 52.381 0.00 0.00 0.00 3.62
4677 6141 4.425577 TTTCGTAGTACTTCCTCCGTTC 57.574 45.455 0.00 0.00 0.00 3.95
4678 6142 4.219288 ACATTTCGTAGTACTTCCTCCGTT 59.781 41.667 0.00 0.00 0.00 4.44
4679 6143 3.760684 ACATTTCGTAGTACTTCCTCCGT 59.239 43.478 0.00 0.00 0.00 4.69
4680 6144 4.367386 ACATTTCGTAGTACTTCCTCCG 57.633 45.455 0.00 0.00 0.00 4.63
4681 6145 5.586339 GGTACATTTCGTAGTACTTCCTCC 58.414 45.833 0.00 0.00 40.26 4.30
4682 6146 5.065218 TCGGTACATTTCGTAGTACTTCCTC 59.935 44.000 0.00 0.00 40.26 3.71
4683 6147 4.943705 TCGGTACATTTCGTAGTACTTCCT 59.056 41.667 0.00 0.00 40.26 3.36
4684 6148 5.235305 TCGGTACATTTCGTAGTACTTCC 57.765 43.478 0.00 0.00 40.26 3.46
4685 6149 4.732442 GCTCGGTACATTTCGTAGTACTTC 59.268 45.833 0.00 0.00 40.26 3.01
4686 6150 4.397417 AGCTCGGTACATTTCGTAGTACTT 59.603 41.667 0.00 0.00 40.26 2.24
4687 6151 3.944015 AGCTCGGTACATTTCGTAGTACT 59.056 43.478 0.00 0.00 40.26 2.73
4688 6152 4.284378 AGCTCGGTACATTTCGTAGTAC 57.716 45.455 0.00 0.00 39.80 2.73
4689 6153 4.395854 TGAAGCTCGGTACATTTCGTAGTA 59.604 41.667 0.00 0.00 0.00 1.82
4690 6154 3.192001 TGAAGCTCGGTACATTTCGTAGT 59.808 43.478 0.00 0.00 0.00 2.73
4691 6155 3.766151 TGAAGCTCGGTACATTTCGTAG 58.234 45.455 0.00 0.00 0.00 3.51
4692 6156 3.853831 TGAAGCTCGGTACATTTCGTA 57.146 42.857 0.00 0.00 0.00 3.43
4693 6157 2.736144 TGAAGCTCGGTACATTTCGT 57.264 45.000 0.00 0.00 0.00 3.85
4694 6158 5.117745 CAGATATGAAGCTCGGTACATTTCG 59.882 44.000 0.00 0.00 0.00 3.46
4760 6224 3.054139 ACTTGTGATATCACCCATGCAGT 60.054 43.478 28.64 18.04 45.88 4.40
4764 6228 8.950210 GGAATATTACTTGTGATATCACCCATG 58.050 37.037 28.64 18.65 45.88 3.66
4765 6229 7.824289 CGGAATATTACTTGTGATATCACCCAT 59.176 37.037 28.64 17.52 45.88 4.00
4766 6230 7.158697 CGGAATATTACTTGTGATATCACCCA 58.841 38.462 28.64 16.62 45.88 4.51
4767 6231 7.159372 ACGGAATATTACTTGTGATATCACCC 58.841 38.462 28.64 18.14 45.88 4.61
4769 6233 8.700644 GTGACGGAATATTACTTGTGATATCAC 58.299 37.037 25.95 25.95 46.59 3.06
4770 6234 7.593644 CGTGACGGAATATTACTTGTGATATCA 59.406 37.037 0.00 0.00 0.00 2.15
4771 6235 7.410513 GCGTGACGGAATATTACTTGTGATATC 60.411 40.741 7.25 0.00 0.00 1.63
4772 6236 6.365247 GCGTGACGGAATATTACTTGTGATAT 59.635 38.462 7.25 0.00 0.00 1.63
4773 6237 5.688621 GCGTGACGGAATATTACTTGTGATA 59.311 40.000 7.25 0.00 0.00 2.15
4774 6238 4.506654 GCGTGACGGAATATTACTTGTGAT 59.493 41.667 7.25 0.00 0.00 3.06
4775 6239 3.861113 GCGTGACGGAATATTACTTGTGA 59.139 43.478 7.25 0.00 0.00 3.58
4776 6240 3.000925 GGCGTGACGGAATATTACTTGTG 59.999 47.826 7.25 0.00 0.00 3.33
4777 6241 3.192466 GGCGTGACGGAATATTACTTGT 58.808 45.455 7.25 0.00 0.00 3.16
4778 6242 3.191669 TGGCGTGACGGAATATTACTTG 58.808 45.455 7.25 0.00 0.00 3.16
4780 6244 2.429610 ACTGGCGTGACGGAATATTACT 59.570 45.455 7.25 0.00 0.00 2.24
4781 6245 2.793232 GACTGGCGTGACGGAATATTAC 59.207 50.000 7.25 0.00 0.00 1.89
4783 6247 1.206132 TGACTGGCGTGACGGAATATT 59.794 47.619 7.25 0.00 0.00 1.28
4784 6248 0.821517 TGACTGGCGTGACGGAATAT 59.178 50.000 7.25 0.00 0.00 1.28
4801 6293 2.033911 ATGTGCACGTGCCCATGA 59.966 55.556 32.98 15.30 37.73 3.07
4824 6316 5.359756 TCATCCATCTTTTGTACAGATCCG 58.640 41.667 0.00 0.00 0.00 4.18
4825 6317 6.261826 CCTTCATCCATCTTTTGTACAGATCC 59.738 42.308 0.00 0.00 0.00 3.36
4826 6318 7.050377 TCCTTCATCCATCTTTTGTACAGATC 58.950 38.462 0.00 0.00 0.00 2.75
4827 6319 6.962182 TCCTTCATCCATCTTTTGTACAGAT 58.038 36.000 0.00 0.00 0.00 2.90
4828 6320 6.373005 TCCTTCATCCATCTTTTGTACAGA 57.627 37.500 0.00 0.00 0.00 3.41
4829 6321 5.065731 GCTCCTTCATCCATCTTTTGTACAG 59.934 44.000 0.00 0.00 0.00 2.74
4831 6323 5.065731 CAGCTCCTTCATCCATCTTTTGTAC 59.934 44.000 0.00 0.00 0.00 2.90
4832 6324 5.188434 CAGCTCCTTCATCCATCTTTTGTA 58.812 41.667 0.00 0.00 0.00 2.41
4834 6326 3.181489 GCAGCTCCTTCATCCATCTTTTG 60.181 47.826 0.00 0.00 0.00 2.44
4836 6328 2.025605 TGCAGCTCCTTCATCCATCTTT 60.026 45.455 0.00 0.00 0.00 2.52
4839 6331 1.134159 AGTGCAGCTCCTTCATCCATC 60.134 52.381 0.00 0.00 0.00 3.51
4849 6341 1.068055 CAATGTTCCAAGTGCAGCTCC 60.068 52.381 0.00 0.00 0.00 4.70
4850 6342 1.068055 CCAATGTTCCAAGTGCAGCTC 60.068 52.381 0.00 0.00 0.00 4.09
4871 6363 3.718210 GAGTAAGTGGCCGGCCGAG 62.718 68.421 39.00 18.40 39.42 4.63
4872 6364 3.766691 GAGTAAGTGGCCGGCCGA 61.767 66.667 39.00 25.66 39.42 5.54
4873 6365 4.832608 GGAGTAAGTGGCCGGCCG 62.833 72.222 39.00 21.04 39.42 6.13
4893 6387 1.490490 TCAGAGCAGTTGGTTTGGACT 59.510 47.619 2.61 0.00 0.00 3.85
4894 6388 1.876156 CTCAGAGCAGTTGGTTTGGAC 59.124 52.381 2.61 0.00 0.00 4.02
4895 6389 1.768275 TCTCAGAGCAGTTGGTTTGGA 59.232 47.619 0.00 0.00 0.00 3.53
4896 6390 2.260844 TCTCAGAGCAGTTGGTTTGG 57.739 50.000 0.00 0.00 0.00 3.28
4897 6391 4.201891 GCATATCTCAGAGCAGTTGGTTTG 60.202 45.833 0.00 0.00 0.00 2.93
4898 6392 3.944015 GCATATCTCAGAGCAGTTGGTTT 59.056 43.478 0.00 0.00 0.00 3.27
4899 6393 3.054875 TGCATATCTCAGAGCAGTTGGTT 60.055 43.478 0.00 0.00 32.48 3.67
4916 6410 9.890629 AGTAGAAAGTTAGATTGAACATGCATA 57.109 29.630 0.00 0.00 0.00 3.14
4917 6411 8.671921 CAGTAGAAAGTTAGATTGAACATGCAT 58.328 33.333 0.00 0.00 0.00 3.96
4939 6433 4.943093 TGTGGCTAGTCGTTATGTACAGTA 59.057 41.667 0.33 0.00 0.00 2.74
5039 6533 1.597302 CCATCGATGGGCTGAGCTG 60.597 63.158 32.99 7.29 44.31 4.24
5040 6534 2.827423 CCATCGATGGGCTGAGCT 59.173 61.111 32.99 0.00 44.31 4.09
5055 6549 1.227527 CCGTCGATAAGCATGGCCA 60.228 57.895 8.56 8.56 0.00 5.36
5065 6559 0.387929 GGGCATTCTCACCGTCGATA 59.612 55.000 0.00 0.00 0.00 2.92
5110 6604 1.214589 CCTTGTCCCGACACCTACG 59.785 63.158 0.00 0.00 41.67 3.51
5147 6645 3.936453 CGACTTTGGTCCGAATAATTCCA 59.064 43.478 0.00 0.00 39.15 3.53
5150 6648 3.126343 GTGCGACTTTGGTCCGAATAATT 59.874 43.478 0.00 0.00 39.15 1.40
5151 6649 2.676342 GTGCGACTTTGGTCCGAATAAT 59.324 45.455 0.00 0.00 39.15 1.28
5152 6650 2.070783 GTGCGACTTTGGTCCGAATAA 58.929 47.619 0.00 0.00 39.15 1.40
5153 6651 1.001068 TGTGCGACTTTGGTCCGAATA 59.999 47.619 0.00 0.00 39.15 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.