Multiple sequence alignment - TraesCS3B01G382100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G382100 chr3B 100.000 4584 0 0 1 4584 602306068 602301485 0.000000e+00 8466
1 TraesCS3B01G382100 chr3B 95.487 421 19 0 1 421 321772202 321772622 0.000000e+00 673
2 TraesCS3B01G382100 chr3A 94.271 2950 113 24 751 3663 598551866 598548936 0.000000e+00 4460
3 TraesCS3B01G382100 chr3A 93.000 600 32 7 3749 4347 598548858 598548268 0.000000e+00 867
4 TraesCS3B01G382100 chr3A 95.359 237 7 1 4348 4584 598548160 598547928 1.560000e-99 374
5 TraesCS3B01G382100 chr3A 89.412 255 22 5 466 718 598552117 598551866 2.660000e-82 316
6 TraesCS3B01G382100 chr3D 93.669 2938 101 39 751 3663 455866934 455864057 0.000000e+00 4316
7 TraesCS3B01G382100 chr3D 95.170 559 22 3 3790 4347 455863901 455863347 0.000000e+00 878
8 TraesCS3B01G382100 chr3D 95.294 425 20 0 1 425 559109261 559108837 0.000000e+00 675
9 TraesCS3B01G382100 chr3D 94.937 237 8 1 4348 4584 455863239 455863007 7.250000e-98 368
10 TraesCS3B01G382100 chr3D 95.652 46 2 0 3749 3794 455863980 455863935 1.770000e-09 75
11 TraesCS3B01G382100 chr4B 95.519 424 19 0 1 424 629957710 629957287 0.000000e+00 678
12 TraesCS3B01G382100 chr4B 95.294 425 20 0 1 425 59189999 59190423 0.000000e+00 675
13 TraesCS3B01G382100 chr1B 95.294 425 20 0 1 425 62810335 62810759 0.000000e+00 675
14 TraesCS3B01G382100 chr1B 95.487 421 19 0 1 421 269218483 269218903 0.000000e+00 673
15 TraesCS3B01G382100 chr5B 95.283 424 20 0 1 424 699778587 699779010 0.000000e+00 673
16 TraesCS3B01G382100 chrUn 95.283 424 19 1 1 424 51423258 51422836 0.000000e+00 671
17 TraesCS3B01G382100 chr2D 93.126 451 25 6 1 448 118468838 118469285 0.000000e+00 656


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G382100 chr3B 602301485 602306068 4583 True 8466.00 8466 100.0000 1 4584 1 chr3B.!!$R1 4583
1 TraesCS3B01G382100 chr3A 598547928 598552117 4189 True 1504.25 4460 93.0105 466 4584 4 chr3A.!!$R1 4118
2 TraesCS3B01G382100 chr3D 455863007 455866934 3927 True 1409.25 4316 94.8570 751 4584 4 chr3D.!!$R2 3833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.041312 CAGAACAACAACCTTCGCCG 60.041 55.0 0.0 0.0 0.0 6.46 F
423 424 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.0 0.0 0.0 0.0 4.30 F
1391 1414 0.105593 TCCATGAATCTCTGCTCGGC 59.894 55.0 0.0 0.0 0.0 5.54 F
1392 1415 0.106335 CCATGAATCTCTGCTCGGCT 59.894 55.0 0.0 0.0 0.0 5.52 F
2127 2166 0.458543 CTACATGTCGCGCTCCAACT 60.459 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1372 1392 0.105593 GCCGAGCAGAGATTCATGGA 59.894 55.000 0.00 0.0 0.00 3.41 R
2104 2142 0.100682 GGAGCGCGACATGTAGAAGA 59.899 55.000 12.10 0.0 0.00 2.87 R
2386 2425 1.201647 TCTGTCGGTCGATCAGAAACC 59.798 52.381 16.81 0.0 35.65 3.27 R
2818 2857 1.671379 GAAGTTGGTCTCGGCCACC 60.671 63.158 2.24 3.1 38.42 4.61 R
3838 3960 0.807496 GCACATGAAGCCTCCTTGAC 59.193 55.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.577152 CAGCACCCCAGAACAACA 57.423 55.556 0.00 0.00 0.00 3.33
18 19 2.805897 CAGCACCCCAGAACAACAA 58.194 52.632 0.00 0.00 0.00 2.83
19 20 0.385390 CAGCACCCCAGAACAACAAC 59.615 55.000 0.00 0.00 0.00 3.32
20 21 0.755327 AGCACCCCAGAACAACAACC 60.755 55.000 0.00 0.00 0.00 3.77
21 22 0.755327 GCACCCCAGAACAACAACCT 60.755 55.000 0.00 0.00 0.00 3.50
22 23 1.775385 CACCCCAGAACAACAACCTT 58.225 50.000 0.00 0.00 0.00 3.50
23 24 1.681264 CACCCCAGAACAACAACCTTC 59.319 52.381 0.00 0.00 0.00 3.46
24 25 0.951558 CCCCAGAACAACAACCTTCG 59.048 55.000 0.00 0.00 0.00 3.79
25 26 0.310854 CCCAGAACAACAACCTTCGC 59.689 55.000 0.00 0.00 0.00 4.70
26 27 0.310854 CCAGAACAACAACCTTCGCC 59.689 55.000 0.00 0.00 0.00 5.54
27 28 0.041312 CAGAACAACAACCTTCGCCG 60.041 55.000 0.00 0.00 0.00 6.46
28 29 0.179067 AGAACAACAACCTTCGCCGA 60.179 50.000 0.00 0.00 0.00 5.54
29 30 0.872388 GAACAACAACCTTCGCCGAT 59.128 50.000 0.00 0.00 0.00 4.18
30 31 0.591170 AACAACAACCTTCGCCGATG 59.409 50.000 0.00 0.00 0.00 3.84
31 32 0.250124 ACAACAACCTTCGCCGATGA 60.250 50.000 1.04 0.00 0.00 2.92
32 33 0.871722 CAACAACCTTCGCCGATGAA 59.128 50.000 1.04 0.00 0.00 2.57
33 34 1.265635 CAACAACCTTCGCCGATGAAA 59.734 47.619 1.04 0.00 0.00 2.69
34 35 1.600023 ACAACCTTCGCCGATGAAAA 58.400 45.000 1.04 0.00 0.00 2.29
35 36 1.950909 ACAACCTTCGCCGATGAAAAA 59.049 42.857 1.04 0.00 0.00 1.94
36 37 2.556622 ACAACCTTCGCCGATGAAAAAT 59.443 40.909 1.04 0.00 0.00 1.82
37 38 3.754323 ACAACCTTCGCCGATGAAAAATA 59.246 39.130 1.04 0.00 0.00 1.40
38 39 4.216687 ACAACCTTCGCCGATGAAAAATAA 59.783 37.500 1.04 0.00 0.00 1.40
39 40 4.351131 ACCTTCGCCGATGAAAAATAAC 57.649 40.909 1.04 0.00 0.00 1.89
40 41 3.181514 ACCTTCGCCGATGAAAAATAACG 60.182 43.478 1.04 0.00 0.00 3.18
41 42 3.181514 CCTTCGCCGATGAAAAATAACGT 60.182 43.478 1.04 0.00 0.00 3.99
42 43 4.033129 CCTTCGCCGATGAAAAATAACGTA 59.967 41.667 1.04 0.00 0.00 3.57
43 44 4.765281 TCGCCGATGAAAAATAACGTAG 57.235 40.909 0.00 0.00 0.00 3.51
44 45 4.422840 TCGCCGATGAAAAATAACGTAGA 58.577 39.130 0.00 0.00 0.00 2.59
45 46 4.266029 TCGCCGATGAAAAATAACGTAGAC 59.734 41.667 0.00 0.00 0.00 2.59
46 47 4.031991 CGCCGATGAAAAATAACGTAGACA 59.968 41.667 0.00 0.00 0.00 3.41
47 48 5.490213 GCCGATGAAAAATAACGTAGACAG 58.510 41.667 0.00 0.00 0.00 3.51
48 49 5.501897 GCCGATGAAAAATAACGTAGACAGG 60.502 44.000 0.00 0.00 0.00 4.00
49 50 5.808540 CCGATGAAAAATAACGTAGACAGGA 59.191 40.000 0.00 0.00 0.00 3.86
50 51 6.311935 CCGATGAAAAATAACGTAGACAGGAA 59.688 38.462 0.00 0.00 0.00 3.36
51 52 7.391786 CGATGAAAAATAACGTAGACAGGAAG 58.608 38.462 0.00 0.00 0.00 3.46
52 53 7.464178 CGATGAAAAATAACGTAGACAGGAAGG 60.464 40.741 0.00 0.00 0.00 3.46
53 54 6.761312 TGAAAAATAACGTAGACAGGAAGGA 58.239 36.000 0.00 0.00 0.00 3.36
54 55 7.391620 TGAAAAATAACGTAGACAGGAAGGAT 58.608 34.615 0.00 0.00 0.00 3.24
55 56 7.548075 TGAAAAATAACGTAGACAGGAAGGATC 59.452 37.037 0.00 0.00 0.00 3.36
56 57 5.532664 AATAACGTAGACAGGAAGGATCC 57.467 43.478 2.48 2.48 46.98 3.36
77 78 3.966215 CCGAAGGCACACGAACAT 58.034 55.556 0.00 0.00 46.14 2.71
78 79 3.131326 CCGAAGGCACACGAACATA 57.869 52.632 0.00 0.00 46.14 2.29
79 80 0.999406 CCGAAGGCACACGAACATAG 59.001 55.000 0.00 0.00 46.14 2.23
80 81 1.403647 CCGAAGGCACACGAACATAGA 60.404 52.381 0.00 0.00 46.14 1.98
81 82 1.654105 CGAAGGCACACGAACATAGAC 59.346 52.381 0.00 0.00 33.01 2.59
82 83 1.654105 GAAGGCACACGAACATAGACG 59.346 52.381 0.00 0.00 0.00 4.18
83 84 0.885879 AGGCACACGAACATAGACGA 59.114 50.000 0.00 0.00 0.00 4.20
84 85 1.271379 AGGCACACGAACATAGACGAA 59.729 47.619 0.00 0.00 0.00 3.85
85 86 1.389106 GGCACACGAACATAGACGAAC 59.611 52.381 0.00 0.00 0.00 3.95
86 87 2.055838 GCACACGAACATAGACGAACA 58.944 47.619 0.00 0.00 0.00 3.18
87 88 2.473609 GCACACGAACATAGACGAACAA 59.526 45.455 0.00 0.00 0.00 2.83
88 89 3.660904 GCACACGAACATAGACGAACAAC 60.661 47.826 0.00 0.00 0.00 3.32
90 91 2.975193 CACGAACATAGACGAACAACGA 59.025 45.455 0.00 0.00 45.77 3.85
91 92 2.975851 ACGAACATAGACGAACAACGAC 59.024 45.455 0.00 0.00 45.77 4.34
92 93 2.024875 CGAACATAGACGAACAACGACG 59.975 50.000 0.00 0.00 45.77 5.12
93 94 2.975410 ACATAGACGAACAACGACGA 57.025 45.000 0.00 0.00 45.77 4.20
94 95 2.847901 ACATAGACGAACAACGACGAG 58.152 47.619 0.00 0.00 45.77 4.18
95 96 2.481568 ACATAGACGAACAACGACGAGA 59.518 45.455 0.00 0.00 45.77 4.04
96 97 3.126514 ACATAGACGAACAACGACGAGAT 59.873 43.478 0.00 0.00 45.77 2.75
97 98 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
98 99 1.135746 AGACGAACAACGACGAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
99 100 0.453950 ACGAACAACGACGAGATCCG 60.454 55.000 0.00 2.02 45.77 4.18
100 101 0.179207 CGAACAACGACGAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
101 102 1.536149 GAACAACGACGAGATCCGAG 58.464 55.000 0.00 6.49 41.76 4.63
102 103 0.456312 AACAACGACGAGATCCGAGC 60.456 55.000 0.00 2.24 41.76 5.03
103 104 1.136774 CAACGACGAGATCCGAGCA 59.863 57.895 0.00 0.00 41.76 4.26
104 105 0.456142 CAACGACGAGATCCGAGCAA 60.456 55.000 0.00 0.00 41.76 3.91
105 106 0.242825 AACGACGAGATCCGAGCAAA 59.757 50.000 0.00 0.00 41.76 3.68
106 107 0.456221 ACGACGAGATCCGAGCAAAT 59.544 50.000 0.00 0.00 41.76 2.32
107 108 1.124462 CGACGAGATCCGAGCAAATC 58.876 55.000 10.05 0.00 41.76 2.17
108 109 1.492720 GACGAGATCCGAGCAAATCC 58.507 55.000 10.05 0.00 41.76 3.01
109 110 0.824109 ACGAGATCCGAGCAAATCCA 59.176 50.000 10.05 0.00 41.76 3.41
110 111 1.212616 CGAGATCCGAGCAAATCCAC 58.787 55.000 0.00 0.00 41.76 4.02
111 112 1.587547 GAGATCCGAGCAAATCCACC 58.412 55.000 0.00 0.00 0.00 4.61
112 113 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
113 114 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
114 115 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
115 116 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
116 117 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
117 118 2.094675 CCGAGCAAATCCACCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
118 119 3.054728 TCCGAGCAAATCCACCAAAGATA 60.055 43.478 0.00 0.00 0.00 1.98
119 120 3.313526 CCGAGCAAATCCACCAAAGATAG 59.686 47.826 0.00 0.00 0.00 2.08
120 121 4.191544 CGAGCAAATCCACCAAAGATAGA 58.808 43.478 0.00 0.00 0.00 1.98
121 122 4.818546 CGAGCAAATCCACCAAAGATAGAT 59.181 41.667 0.00 0.00 0.00 1.98
122 123 5.049818 CGAGCAAATCCACCAAAGATAGATC 60.050 44.000 0.00 0.00 0.00 2.75
123 124 6.011122 AGCAAATCCACCAAAGATAGATCT 57.989 37.500 0.00 0.00 39.22 2.75
124 125 5.826737 AGCAAATCCACCAAAGATAGATCTG 59.173 40.000 5.18 0.00 37.19 2.90
125 126 5.506982 GCAAATCCACCAAAGATAGATCTGC 60.507 44.000 5.18 0.00 37.19 4.26
126 127 3.845781 TCCACCAAAGATAGATCTGCC 57.154 47.619 5.18 0.00 37.19 4.85
127 128 2.103094 TCCACCAAAGATAGATCTGCCG 59.897 50.000 5.18 0.00 37.19 5.69
128 129 2.487934 CACCAAAGATAGATCTGCCGG 58.512 52.381 5.18 0.00 37.19 6.13
129 130 2.103094 CACCAAAGATAGATCTGCCGGA 59.897 50.000 5.05 0.00 37.19 5.14
130 131 2.366916 ACCAAAGATAGATCTGCCGGAG 59.633 50.000 5.05 0.00 37.19 4.63
131 132 2.630098 CCAAAGATAGATCTGCCGGAGA 59.370 50.000 5.05 5.76 37.19 3.71
132 133 3.553922 CCAAAGATAGATCTGCCGGAGAC 60.554 52.174 5.05 0.97 37.19 3.36
133 134 2.666272 AGATAGATCTGCCGGAGACA 57.334 50.000 5.05 0.00 35.42 3.41
134 135 2.235016 AGATAGATCTGCCGGAGACAC 58.765 52.381 5.05 3.97 35.42 3.67
135 136 1.957177 GATAGATCTGCCGGAGACACA 59.043 52.381 5.05 0.00 31.75 3.72
136 137 1.103803 TAGATCTGCCGGAGACACAC 58.896 55.000 5.05 0.00 31.75 3.82
137 138 1.153549 GATCTGCCGGAGACACACC 60.154 63.158 5.05 0.00 31.75 4.16
138 139 1.608717 GATCTGCCGGAGACACACCT 61.609 60.000 5.05 0.00 31.75 4.00
139 140 1.608717 ATCTGCCGGAGACACACCTC 61.609 60.000 5.05 0.00 31.75 3.85
145 146 4.655527 GAGACACACCTCCACACG 57.344 61.111 0.00 0.00 0.00 4.49
146 147 1.664965 GAGACACACCTCCACACGC 60.665 63.158 0.00 0.00 0.00 5.34
147 148 2.665185 GACACACCTCCACACGCC 60.665 66.667 0.00 0.00 0.00 5.68
148 149 4.250305 ACACACCTCCACACGCCC 62.250 66.667 0.00 0.00 0.00 6.13
149 150 4.248842 CACACCTCCACACGCCCA 62.249 66.667 0.00 0.00 0.00 5.36
150 151 4.250305 ACACCTCCACACGCCCAC 62.250 66.667 0.00 0.00 0.00 4.61
153 154 4.263572 CCTCCACACGCCCACCAA 62.264 66.667 0.00 0.00 0.00 3.67
154 155 2.978010 CTCCACACGCCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
155 156 4.920112 TCCACACGCCCACCAACG 62.920 66.667 0.00 0.00 0.00 4.10
156 157 4.920112 CCACACGCCCACCAACGA 62.920 66.667 0.00 0.00 0.00 3.85
157 158 2.668212 CACACGCCCACCAACGAT 60.668 61.111 0.00 0.00 0.00 3.73
158 159 2.668212 ACACGCCCACCAACGATG 60.668 61.111 0.00 0.00 0.00 3.84
159 160 4.101790 CACGCCCACCAACGATGC 62.102 66.667 0.00 0.00 0.00 3.91
160 161 4.329545 ACGCCCACCAACGATGCT 62.330 61.111 0.00 0.00 0.00 3.79
161 162 3.499737 CGCCCACCAACGATGCTC 61.500 66.667 0.00 0.00 0.00 4.26
162 163 3.499737 GCCCACCAACGATGCTCG 61.500 66.667 0.00 4.36 46.93 5.03
163 164 2.264480 CCCACCAACGATGCTCGA 59.736 61.111 11.64 0.00 43.74 4.04
164 165 2.100631 CCCACCAACGATGCTCGAC 61.101 63.158 11.64 0.00 43.74 4.20
165 166 2.444624 CCACCAACGATGCTCGACG 61.445 63.158 11.64 0.00 43.74 5.12
166 167 2.809601 ACCAACGATGCTCGACGC 60.810 61.111 11.64 0.58 43.74 5.19
188 189 4.851179 CCGAAACGGGGGCTAGGC 62.851 72.222 8.00 8.00 44.15 3.93
190 191 4.851179 GAAACGGGGGCTAGGCGG 62.851 72.222 10.58 4.71 0.00 6.13
214 215 5.372373 GGAGACCTTTATTCCATCTTCAGG 58.628 45.833 0.00 0.00 0.00 3.86
215 216 5.372373 GAGACCTTTATTCCATCTTCAGGG 58.628 45.833 0.00 0.00 0.00 4.45
216 217 5.039645 AGACCTTTATTCCATCTTCAGGGA 58.960 41.667 0.00 0.00 0.00 4.20
217 218 5.131809 AGACCTTTATTCCATCTTCAGGGAG 59.868 44.000 0.00 0.00 34.02 4.30
218 219 4.140536 CCTTTATTCCATCTTCAGGGAGC 58.859 47.826 0.00 0.00 34.02 4.70
219 220 3.864789 TTATTCCATCTTCAGGGAGCC 57.135 47.619 0.00 0.00 34.02 4.70
220 221 0.471617 ATTCCATCTTCAGGGAGCCG 59.528 55.000 0.00 0.00 34.02 5.52
221 222 0.909610 TTCCATCTTCAGGGAGCCGT 60.910 55.000 0.00 0.00 34.02 5.68
222 223 1.144936 CCATCTTCAGGGAGCCGTC 59.855 63.158 0.00 0.00 0.00 4.79
223 224 1.227089 CATCTTCAGGGAGCCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
224 225 3.082579 ATCTTCAGGGAGCCGTCGC 62.083 63.158 0.00 0.00 35.85 5.19
225 226 4.821589 CTTCAGGGAGCCGTCGCC 62.822 72.222 0.00 0.00 36.26 5.54
240 241 3.760035 GCCGTCTCGCCTTCCTGA 61.760 66.667 0.00 0.00 0.00 3.86
241 242 2.970639 CCGTCTCGCCTTCCTGAA 59.029 61.111 0.00 0.00 0.00 3.02
242 243 1.517832 CCGTCTCGCCTTCCTGAAT 59.482 57.895 0.00 0.00 0.00 2.57
243 244 0.744874 CCGTCTCGCCTTCCTGAATA 59.255 55.000 0.00 0.00 0.00 1.75
244 245 1.269309 CCGTCTCGCCTTCCTGAATAG 60.269 57.143 0.00 0.00 0.00 1.73
245 246 1.269309 CGTCTCGCCTTCCTGAATAGG 60.269 57.143 0.00 0.00 46.06 2.57
260 261 5.556915 CTGAATAGGACACAAACCCTAACA 58.443 41.667 0.00 0.00 38.42 2.41
261 262 5.942961 TGAATAGGACACAAACCCTAACAA 58.057 37.500 0.00 0.00 38.42 2.83
262 263 6.001460 TGAATAGGACACAAACCCTAACAAG 58.999 40.000 0.00 0.00 38.42 3.16
263 264 5.836024 ATAGGACACAAACCCTAACAAGA 57.164 39.130 0.00 0.00 38.42 3.02
264 265 4.724279 AGGACACAAACCCTAACAAGAT 57.276 40.909 0.00 0.00 0.00 2.40
265 266 5.061721 AGGACACAAACCCTAACAAGATT 57.938 39.130 0.00 0.00 0.00 2.40
266 267 4.827284 AGGACACAAACCCTAACAAGATTG 59.173 41.667 0.00 0.00 0.00 2.67
267 268 4.825085 GGACACAAACCCTAACAAGATTGA 59.175 41.667 0.00 0.00 0.00 2.57
268 269 5.300792 GGACACAAACCCTAACAAGATTGAA 59.699 40.000 0.00 0.00 0.00 2.69
269 270 6.183360 GGACACAAACCCTAACAAGATTGAAA 60.183 38.462 0.00 0.00 0.00 2.69
270 271 7.176589 ACACAAACCCTAACAAGATTGAAAA 57.823 32.000 0.00 0.00 0.00 2.29
271 272 7.616313 ACACAAACCCTAACAAGATTGAAAAA 58.384 30.769 0.00 0.00 0.00 1.94
290 291 3.614159 AAAACGACTAAAAACGGAGCC 57.386 42.857 0.00 0.00 0.00 4.70
291 292 1.516161 AACGACTAAAAACGGAGCCC 58.484 50.000 0.00 0.00 0.00 5.19
292 293 0.683412 ACGACTAAAAACGGAGCCCT 59.317 50.000 0.00 0.00 0.00 5.19
293 294 1.337541 ACGACTAAAAACGGAGCCCTC 60.338 52.381 0.00 0.00 0.00 4.30
294 295 1.735386 GACTAAAAACGGAGCCCTCC 58.265 55.000 4.19 4.19 46.18 4.30
295 296 0.327259 ACTAAAAACGGAGCCCTCCC 59.673 55.000 8.68 0.00 46.96 4.30
317 318 2.440980 GCCCTTGCCAGGATCCAC 60.441 66.667 15.82 3.31 44.19 4.02
318 319 2.276740 CCCTTGCCAGGATCCACC 59.723 66.667 15.82 1.73 44.19 4.61
319 320 2.124570 CCTTGCCAGGATCCACCG 60.125 66.667 15.82 1.33 44.19 4.94
320 321 2.825836 CTTGCCAGGATCCACCGC 60.826 66.667 15.82 12.41 44.74 5.68
321 322 4.776322 TTGCCAGGATCCACCGCG 62.776 66.667 15.82 0.00 44.74 6.46
325 326 4.899239 CAGGATCCACCGCGCCTC 62.899 72.222 15.82 0.00 44.74 4.70
328 329 4.241555 GATCCACCGCGCCTCCAT 62.242 66.667 0.00 0.00 0.00 3.41
329 330 4.552365 ATCCACCGCGCCTCCATG 62.552 66.667 0.00 0.00 0.00 3.66
335 336 3.536917 CGCGCCTCCATGGTCCTA 61.537 66.667 12.58 0.00 38.35 2.94
336 337 2.423446 GCGCCTCCATGGTCCTAG 59.577 66.667 12.58 0.86 38.35 3.02
337 338 3.142393 CGCCTCCATGGTCCTAGG 58.858 66.667 12.58 12.26 38.35 3.02
338 339 2.511452 CGCCTCCATGGTCCTAGGG 61.511 68.421 16.84 9.73 38.35 3.53
339 340 2.823758 GCCTCCATGGTCCTAGGGC 61.824 68.421 16.84 6.96 38.35 5.19
340 341 2.150051 CCTCCATGGTCCTAGGGCC 61.150 68.421 26.64 26.64 0.00 5.80
341 342 1.384502 CTCCATGGTCCTAGGGCCA 60.385 63.158 36.72 36.72 39.33 5.36
342 343 0.769776 CTCCATGGTCCTAGGGCCAT 60.770 60.000 37.66 37.66 45.55 4.40
343 344 0.768221 TCCATGGTCCTAGGGCCATC 60.768 60.000 39.84 13.02 43.05 3.51
344 345 1.372683 CATGGTCCTAGGGCCATCG 59.627 63.158 39.84 29.97 43.05 3.84
345 346 1.843376 ATGGTCCTAGGGCCATCGG 60.843 63.158 37.66 2.30 41.24 4.18
346 347 2.122989 GGTCCTAGGGCCATCGGA 60.123 66.667 28.32 6.56 0.00 4.55
347 348 2.210711 GGTCCTAGGGCCATCGGAG 61.211 68.421 28.32 0.00 0.00 4.63
348 349 1.152525 GTCCTAGGGCCATCGGAGA 60.153 63.158 11.49 0.00 45.75 3.71
349 350 1.152525 TCCTAGGGCCATCGGAGAC 60.153 63.158 6.56 0.00 42.51 3.36
361 362 3.188965 GGAGACGAGACGGACCTG 58.811 66.667 0.00 0.00 0.00 4.00
362 363 2.486042 GAGACGAGACGGACCTGC 59.514 66.667 0.00 0.00 0.00 4.85
363 364 3.384014 GAGACGAGACGGACCTGCG 62.384 68.421 0.00 0.00 0.00 5.18
390 391 4.070552 GCGAGAGGCACGAACCCT 62.071 66.667 0.00 0.00 42.87 4.34
391 392 2.707849 GCGAGAGGCACGAACCCTA 61.708 63.158 0.00 0.00 42.87 3.53
392 393 1.888018 CGAGAGGCACGAACCCTAA 59.112 57.895 0.00 0.00 31.41 2.69
393 394 0.458025 CGAGAGGCACGAACCCTAAC 60.458 60.000 0.00 0.00 31.41 2.34
394 395 0.896226 GAGAGGCACGAACCCTAACT 59.104 55.000 0.00 0.00 31.41 2.24
395 396 1.275573 GAGAGGCACGAACCCTAACTT 59.724 52.381 0.00 0.00 31.41 2.66
396 397 1.697982 AGAGGCACGAACCCTAACTTT 59.302 47.619 0.00 0.00 31.41 2.66
397 398 2.074576 GAGGCACGAACCCTAACTTTC 58.925 52.381 0.00 0.00 31.41 2.62
398 399 1.697982 AGGCACGAACCCTAACTTTCT 59.302 47.619 0.00 0.00 0.00 2.52
399 400 2.105993 AGGCACGAACCCTAACTTTCTT 59.894 45.455 0.00 0.00 0.00 2.52
400 401 2.882761 GGCACGAACCCTAACTTTCTTT 59.117 45.455 0.00 0.00 0.00 2.52
401 402 3.058432 GGCACGAACCCTAACTTTCTTTC 60.058 47.826 0.00 0.00 0.00 2.62
402 403 3.813724 GCACGAACCCTAACTTTCTTTCT 59.186 43.478 0.00 0.00 0.00 2.52
403 404 4.275196 GCACGAACCCTAACTTTCTTTCTT 59.725 41.667 0.00 0.00 0.00 2.52
404 405 5.748592 CACGAACCCTAACTTTCTTTCTTG 58.251 41.667 0.00 0.00 0.00 3.02
405 406 5.526111 CACGAACCCTAACTTTCTTTCTTGA 59.474 40.000 0.00 0.00 0.00 3.02
406 407 6.037830 CACGAACCCTAACTTTCTTTCTTGAA 59.962 38.462 0.00 0.00 0.00 2.69
407 408 6.260271 ACGAACCCTAACTTTCTTTCTTGAAG 59.740 38.462 0.00 0.00 36.67 3.02
408 409 6.293462 CGAACCCTAACTTTCTTTCTTGAAGG 60.293 42.308 0.00 0.00 35.98 3.46
409 410 6.262056 ACCCTAACTTTCTTTCTTGAAGGA 57.738 37.500 0.00 0.00 35.98 3.36
410 411 6.299922 ACCCTAACTTTCTTTCTTGAAGGAG 58.700 40.000 0.00 0.00 35.98 3.69
411 412 5.707764 CCCTAACTTTCTTTCTTGAAGGAGG 59.292 44.000 0.00 0.00 35.98 4.30
412 413 6.465894 CCCTAACTTTCTTTCTTGAAGGAGGA 60.466 42.308 0.00 0.00 35.98 3.71
413 414 6.652900 CCTAACTTTCTTTCTTGAAGGAGGAG 59.347 42.308 0.00 2.31 35.98 3.69
414 415 4.979335 ACTTTCTTTCTTGAAGGAGGAGG 58.021 43.478 0.00 0.00 35.98 4.30
415 416 4.660771 ACTTTCTTTCTTGAAGGAGGAGGA 59.339 41.667 0.00 0.00 35.98 3.71
416 417 4.899352 TTCTTTCTTGAAGGAGGAGGAG 57.101 45.455 0.00 0.00 35.98 3.69
417 418 3.177228 TCTTTCTTGAAGGAGGAGGAGG 58.823 50.000 0.00 0.00 35.98 4.30
418 419 3.177228 CTTTCTTGAAGGAGGAGGAGGA 58.823 50.000 0.00 0.00 0.00 3.71
419 420 2.541233 TCTTGAAGGAGGAGGAGGAG 57.459 55.000 0.00 0.00 0.00 3.69
420 421 1.007721 TCTTGAAGGAGGAGGAGGAGG 59.992 57.143 0.00 0.00 0.00 4.30
421 422 1.007721 CTTGAAGGAGGAGGAGGAGGA 59.992 57.143 0.00 0.00 0.00 3.71
422 423 0.633921 TGAAGGAGGAGGAGGAGGAG 59.366 60.000 0.00 0.00 0.00 3.69
423 424 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
424 425 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
425 426 2.123033 GAGGAGGAGGAGGAGGCC 60.123 72.222 0.00 0.00 0.00 5.19
426 427 2.623431 AGGAGGAGGAGGAGGCCT 60.623 66.667 3.86 3.86 42.17 5.19
427 428 2.250635 GAGGAGGAGGAGGAGGCCTT 62.251 65.000 6.77 0.00 38.73 4.35
428 429 2.069430 GGAGGAGGAGGAGGCCTTG 61.069 68.421 6.77 0.00 38.73 3.61
429 430 2.690510 AGGAGGAGGAGGCCTTGC 60.691 66.667 6.77 0.00 38.73 4.01
430 431 2.690510 GGAGGAGGAGGCCTTGCT 60.691 66.667 6.77 1.14 38.73 3.91
431 432 2.741055 GGAGGAGGAGGCCTTGCTC 61.741 68.421 15.71 15.71 43.05 4.26
432 433 1.992277 GAGGAGGAGGCCTTGCTCA 60.992 63.158 18.33 0.00 45.37 4.26
433 434 2.250741 GAGGAGGAGGCCTTGCTCAC 62.251 65.000 18.33 10.92 45.37 3.51
434 435 2.125350 GAGGAGGCCTTGCTCACG 60.125 66.667 6.77 0.00 43.25 4.35
435 436 2.925170 AGGAGGCCTTGCTCACGT 60.925 61.111 6.77 0.00 0.00 4.49
436 437 1.605058 GAGGAGGCCTTGCTCACGTA 61.605 60.000 6.77 0.00 43.25 3.57
437 438 1.448013 GGAGGCCTTGCTCACGTAC 60.448 63.158 6.77 0.00 0.00 3.67
438 439 1.592223 GAGGCCTTGCTCACGTACT 59.408 57.895 6.77 0.00 0.00 2.73
439 440 0.815734 GAGGCCTTGCTCACGTACTA 59.184 55.000 6.77 0.00 0.00 1.82
440 441 1.409427 GAGGCCTTGCTCACGTACTAT 59.591 52.381 6.77 0.00 0.00 2.12
441 442 1.409427 AGGCCTTGCTCACGTACTATC 59.591 52.381 0.00 0.00 0.00 2.08
442 443 1.538419 GGCCTTGCTCACGTACTATCC 60.538 57.143 0.00 0.00 0.00 2.59
443 444 1.136305 GCCTTGCTCACGTACTATCCA 59.864 52.381 0.00 0.00 0.00 3.41
444 445 2.418197 GCCTTGCTCACGTACTATCCAA 60.418 50.000 0.00 0.00 0.00 3.53
445 446 3.448686 CCTTGCTCACGTACTATCCAAG 58.551 50.000 0.00 0.00 0.00 3.61
446 447 3.448686 CTTGCTCACGTACTATCCAAGG 58.551 50.000 0.00 0.00 0.00 3.61
447 448 2.730382 TGCTCACGTACTATCCAAGGA 58.270 47.619 0.00 0.00 0.00 3.36
448 449 3.093814 TGCTCACGTACTATCCAAGGAA 58.906 45.455 0.00 0.00 0.00 3.36
449 450 3.704566 TGCTCACGTACTATCCAAGGAAT 59.295 43.478 0.00 0.00 0.00 3.01
450 451 4.051922 GCTCACGTACTATCCAAGGAATG 58.948 47.826 0.00 0.00 0.00 2.67
451 452 4.051922 CTCACGTACTATCCAAGGAATGC 58.948 47.826 0.00 0.00 0.00 3.56
452 453 3.449377 TCACGTACTATCCAAGGAATGCA 59.551 43.478 0.00 0.00 0.00 3.96
453 454 4.100963 TCACGTACTATCCAAGGAATGCAT 59.899 41.667 0.00 0.00 0.00 3.96
454 455 4.449068 CACGTACTATCCAAGGAATGCATC 59.551 45.833 0.00 0.00 0.00 3.91
492 494 8.122952 AGAATTTGTCTGTTTCAAAGAGTTACG 58.877 33.333 0.00 0.00 38.02 3.18
497 499 5.064325 GTCTGTTTCAAAGAGTTACGTTGGT 59.936 40.000 0.00 0.00 38.24 3.67
498 500 5.644636 TCTGTTTCAAAGAGTTACGTTGGTT 59.355 36.000 0.00 0.00 38.24 3.67
562 564 5.878116 TGTATAACAGTGTATCAGCAAACCC 59.122 40.000 0.00 0.00 0.00 4.11
582 584 4.279671 ACCCGATTCAAAACAAGTGCATTA 59.720 37.500 0.00 0.00 0.00 1.90
614 616 2.031245 GTGCACAACGGAACATGATGAA 60.031 45.455 13.17 0.00 0.00 2.57
619 621 3.225548 CAACGGAACATGATGAAACACG 58.774 45.455 0.00 0.00 0.00 4.49
652 655 6.799786 ACAAAACCGAACGAAACATTTTAG 57.200 33.333 0.00 0.00 0.00 1.85
656 659 5.996669 ACCGAACGAAACATTTTAGAACT 57.003 34.783 0.00 0.00 0.00 3.01
661 664 7.329226 CCGAACGAAACATTTTAGAACTAGGTA 59.671 37.037 0.00 0.00 0.00 3.08
718 721 2.159043 AGAGCAATCACGAACGATGGAT 60.159 45.455 0.14 0.00 0.00 3.41
719 722 2.205074 AGCAATCACGAACGATGGATC 58.795 47.619 0.14 0.00 0.00 3.36
720 723 1.261619 GCAATCACGAACGATGGATCC 59.738 52.381 4.20 4.20 0.00 3.36
721 724 2.549926 CAATCACGAACGATGGATCCA 58.450 47.619 18.88 18.88 0.00 3.41
722 725 3.133691 CAATCACGAACGATGGATCCAT 58.866 45.455 27.66 27.66 39.69 3.41
723 726 2.223537 TCACGAACGATGGATCCATG 57.776 50.000 32.05 23.43 36.70 3.66
724 727 0.583438 CACGAACGATGGATCCATGC 59.417 55.000 32.05 20.24 36.70 4.06
725 728 0.177836 ACGAACGATGGATCCATGCA 59.822 50.000 32.05 1.06 36.70 3.96
726 729 0.583438 CGAACGATGGATCCATGCAC 59.417 55.000 32.05 16.23 36.70 4.57
727 730 1.667236 GAACGATGGATCCATGCACA 58.333 50.000 32.05 0.00 36.70 4.57
728 731 1.600957 GAACGATGGATCCATGCACAG 59.399 52.381 32.05 17.95 36.70 3.66
729 732 0.179037 ACGATGGATCCATGCACAGG 60.179 55.000 32.05 14.72 36.70 4.00
730 733 0.107268 CGATGGATCCATGCACAGGA 59.893 55.000 32.05 11.77 39.97 3.86
736 739 0.769873 ATCCATGCACAGGATCTCCC 59.230 55.000 15.06 0.00 42.07 4.30
737 740 1.227764 CCATGCACAGGATCTCCCG 60.228 63.158 0.66 0.00 40.87 5.14
738 741 1.524002 CATGCACAGGATCTCCCGT 59.476 57.895 0.00 0.00 40.87 5.28
739 742 0.812811 CATGCACAGGATCTCCCGTG 60.813 60.000 8.02 8.02 40.19 4.94
740 743 1.267574 ATGCACAGGATCTCCCGTGT 61.268 55.000 12.87 0.66 39.74 4.49
741 744 0.613572 TGCACAGGATCTCCCGTGTA 60.614 55.000 12.87 6.83 39.74 2.90
742 745 0.753262 GCACAGGATCTCCCGTGTAT 59.247 55.000 12.87 0.00 39.74 2.29
743 746 1.539065 GCACAGGATCTCCCGTGTATG 60.539 57.143 12.87 0.00 39.74 2.39
744 747 2.031870 CACAGGATCTCCCGTGTATGA 58.968 52.381 4.69 0.00 40.87 2.15
745 748 2.032620 ACAGGATCTCCCGTGTATGAC 58.967 52.381 0.00 0.00 40.87 3.06
746 749 2.031870 CAGGATCTCCCGTGTATGACA 58.968 52.381 0.00 0.00 40.87 3.58
747 750 2.035193 CAGGATCTCCCGTGTATGACAG 59.965 54.545 0.00 0.00 40.87 3.51
748 751 2.091830 AGGATCTCCCGTGTATGACAGA 60.092 50.000 0.00 0.00 40.87 3.41
749 752 2.894126 GGATCTCCCGTGTATGACAGAT 59.106 50.000 0.00 0.00 0.00 2.90
760 763 6.100004 CGTGTATGACAGATAAACCACTCTT 58.900 40.000 0.00 0.00 0.00 2.85
782 786 9.664332 CTCTTTATATTGATCCCCTCTGTAATG 57.336 37.037 0.00 0.00 0.00 1.90
857 869 8.027189 TCTCATTAGCGCGTCAATAATAGTAAT 58.973 33.333 8.43 0.00 0.00 1.89
858 870 8.169839 TCATTAGCGCGTCAATAATAGTAATC 57.830 34.615 8.43 0.00 0.00 1.75
876 888 1.512734 CGCAGAAGCCAAACGATGC 60.513 57.895 0.00 0.00 37.52 3.91
945 965 2.507547 CATGCATGCACAACCCGC 60.508 61.111 25.37 0.00 0.00 6.13
962 982 3.518998 CGCGATCGACACCCTCCT 61.519 66.667 21.57 0.00 38.10 3.69
963 983 2.413765 GCGATCGACACCCTCCTC 59.586 66.667 21.57 0.00 0.00 3.71
964 984 2.415608 GCGATCGACACCCTCCTCA 61.416 63.158 21.57 0.00 0.00 3.86
966 986 0.748367 CGATCGACACCCTCCTCAGA 60.748 60.000 10.26 0.00 0.00 3.27
967 987 1.028905 GATCGACACCCTCCTCAGAG 58.971 60.000 0.00 0.00 40.09 3.35
975 995 3.393970 CTCCTCAGAGGCCGGCAA 61.394 66.667 30.85 6.65 36.39 4.52
977 997 2.203126 CCTCAGAGGCCGGCAATC 60.203 66.667 30.85 24.80 0.00 2.67
978 998 2.739996 CCTCAGAGGCCGGCAATCT 61.740 63.158 30.85 26.69 0.00 2.40
979 999 1.222936 CTCAGAGGCCGGCAATCTT 59.777 57.895 30.85 12.18 0.00 2.40
980 1000 0.465705 CTCAGAGGCCGGCAATCTTA 59.534 55.000 30.85 20.00 0.00 2.10
981 1001 0.465705 TCAGAGGCCGGCAATCTTAG 59.534 55.000 30.85 18.42 0.00 2.18
982 1002 0.533755 CAGAGGCCGGCAATCTTAGG 60.534 60.000 30.85 14.60 0.00 2.69
990 1010 1.223487 GCAATCTTAGGCCGTGGGA 59.777 57.895 0.00 0.00 0.00 4.37
1116 1136 4.643387 GTGGTGGCGAGCCTGGTT 62.643 66.667 15.75 0.00 36.94 3.67
1391 1414 0.105593 TCCATGAATCTCTGCTCGGC 59.894 55.000 0.00 0.00 0.00 5.54
1392 1415 0.106335 CCATGAATCTCTGCTCGGCT 59.894 55.000 0.00 0.00 0.00 5.52
1430 1453 3.319316 GTGTGTTTGCGCCGTTGC 61.319 61.111 4.18 0.00 0.00 4.17
1624 1651 2.120909 TACCTACCTACGTGCGCCC 61.121 63.158 4.18 0.00 0.00 6.13
1635 1662 2.124193 TGCGCCCCCAATGAGATG 60.124 61.111 4.18 0.00 0.00 2.90
1676 1703 4.111916 GGTACGTTGCGCCTTAACTTATA 58.888 43.478 4.18 0.00 0.00 0.98
1677 1704 4.026558 GGTACGTTGCGCCTTAACTTATAC 60.027 45.833 4.18 5.84 0.00 1.47
1689 1720 7.364970 GCCTTAACTTATACTAGCTCTCTGAC 58.635 42.308 0.00 0.00 0.00 3.51
1696 1727 2.095461 ACTAGCTCTCTGACGCATTCA 58.905 47.619 0.00 0.00 0.00 2.57
1844 1878 1.669779 AGCACGTACGGAGCTACTAAG 59.330 52.381 28.40 4.91 36.73 2.18
1852 1886 3.353557 ACGGAGCTACTAAGTCACATGA 58.646 45.455 0.00 0.00 0.00 3.07
1854 1888 4.219944 ACGGAGCTACTAAGTCACATGAAA 59.780 41.667 0.00 0.00 0.00 2.69
1856 1890 4.870991 GGAGCTACTAAGTCACATGAAACC 59.129 45.833 0.00 0.00 0.00 3.27
1857 1891 5.337652 GGAGCTACTAAGTCACATGAAACCT 60.338 44.000 0.00 0.00 0.00 3.50
1859 1893 6.868622 AGCTACTAAGTCACATGAAACCTAG 58.131 40.000 0.00 3.26 0.00 3.02
1863 1897 6.631962 ACTAAGTCACATGAAACCTAGCTAC 58.368 40.000 0.00 0.00 0.00 3.58
1864 1898 5.746990 AAGTCACATGAAACCTAGCTACT 57.253 39.130 0.00 0.00 0.00 2.57
1916 1950 5.829924 ACAAGATAAGATAATGCTGGGTTGG 59.170 40.000 0.00 0.00 0.00 3.77
1923 1957 1.762708 AATGCTGGGTTGGGTAATCG 58.237 50.000 0.00 0.00 0.00 3.34
1943 1977 2.613977 CGATTGGAGTGCCTCTGTTTCT 60.614 50.000 2.79 0.00 34.31 2.52
1976 2010 2.935201 GCAAGTGTCTCTGATGATCCAC 59.065 50.000 0.00 0.00 0.00 4.02
2003 2037 3.160269 CCTGGGAAGCTTTTTCATGTCT 58.840 45.455 0.00 0.00 0.00 3.41
2060 2094 1.373570 GCATGACCTTCTTCCCTTCG 58.626 55.000 0.00 0.00 0.00 3.79
2104 2142 3.751518 GCGGGTAACTTATCCATCCATT 58.248 45.455 0.00 0.00 0.00 3.16
2105 2144 3.751698 GCGGGTAACTTATCCATCCATTC 59.248 47.826 0.00 0.00 0.00 2.67
2119 2158 2.809446 TCCATTCTTCTACATGTCGCG 58.191 47.619 0.00 0.00 0.00 5.87
2127 2166 0.458543 CTACATGTCGCGCTCCAACT 60.459 55.000 0.00 0.00 0.00 3.16
2157 2196 5.518848 ACTTGCTAGAGATGATCAGTGAG 57.481 43.478 0.09 0.00 0.00 3.51
2373 2412 2.913765 TTTGCGTGGCATCAACGGG 61.914 57.895 4.91 0.00 38.76 5.28
2386 2425 1.595929 AACGGGTACAAGGTGCGTG 60.596 57.895 0.00 0.00 0.00 5.34
2401 2440 1.683790 GCGTGGTTTCTGATCGACCG 61.684 60.000 0.00 0.00 36.22 4.79
2417 2456 1.129998 GACCGACAGATTTCGACGAGA 59.870 52.381 0.00 0.00 41.78 4.04
2418 2457 1.135746 ACCGACAGATTTCGACGAGAC 60.136 52.381 0.00 0.00 41.78 3.36
2419 2458 1.135774 CCGACAGATTTCGACGAGACA 60.136 52.381 0.00 0.00 41.78 3.41
2420 2459 2.478031 CCGACAGATTTCGACGAGACAT 60.478 50.000 0.00 0.00 41.78 3.06
2421 2460 2.527887 CGACAGATTTCGACGAGACATG 59.472 50.000 0.00 0.00 41.78 3.21
2424 2463 2.028523 CAGATTTCGACGAGACATGCAC 59.971 50.000 0.00 0.00 0.00 4.57
3226 3265 2.669569 GGCTTCTTCGTGCTGGCA 60.670 61.111 0.00 0.00 0.00 4.92
3231 3270 2.281070 CTTCGTGCTGGCACTGGT 60.281 61.111 20.97 0.00 44.16 4.00
3355 3394 2.400798 GCCATCGACATGTGCGTG 59.599 61.111 1.15 7.90 0.00 5.34
3469 3508 1.485978 GGGCTCTTCTCCATCCCCTAT 60.486 57.143 0.00 0.00 0.00 2.57
3590 3629 1.078143 AAGTCCCGATGAAGGCTGC 60.078 57.895 0.00 0.00 0.00 5.25
3620 3659 3.207044 ACCCTTCCTGACCTGTAGATT 57.793 47.619 0.00 0.00 0.00 2.40
3663 3709 6.744993 CGACATGATCTAGTGATAGCATGTAC 59.255 42.308 11.65 6.51 42.79 2.90
3664 3710 7.361628 CGACATGATCTAGTGATAGCATGTACT 60.362 40.741 11.65 0.00 42.79 2.73
3665 3711 7.825681 ACATGATCTAGTGATAGCATGTACTC 58.174 38.462 10.35 0.00 41.87 2.59
3666 3712 6.825944 TGATCTAGTGATAGCATGTACTCC 57.174 41.667 0.00 0.00 32.19 3.85
3667 3713 5.712446 TGATCTAGTGATAGCATGTACTCCC 59.288 44.000 0.00 0.00 32.19 4.30
3668 3714 5.326283 TCTAGTGATAGCATGTACTCCCT 57.674 43.478 0.00 0.00 0.00 4.20
3669 3715 5.317808 TCTAGTGATAGCATGTACTCCCTC 58.682 45.833 0.00 0.00 0.00 4.30
3670 3716 3.235200 AGTGATAGCATGTACTCCCTCC 58.765 50.000 0.00 0.00 0.00 4.30
3671 3717 2.300437 GTGATAGCATGTACTCCCTCCC 59.700 54.545 0.00 0.00 0.00 4.30
3672 3718 2.180086 TGATAGCATGTACTCCCTCCCT 59.820 50.000 0.00 0.00 0.00 4.20
3673 3719 2.383442 TAGCATGTACTCCCTCCCTC 57.617 55.000 0.00 0.00 0.00 4.30
3674 3720 0.639392 AGCATGTACTCCCTCCCTCT 59.361 55.000 0.00 0.00 0.00 3.69
3675 3721 0.755686 GCATGTACTCCCTCCCTCTG 59.244 60.000 0.00 0.00 0.00 3.35
3676 3722 1.967274 GCATGTACTCCCTCCCTCTGT 60.967 57.143 0.00 0.00 0.00 3.41
3677 3723 2.690026 GCATGTACTCCCTCCCTCTGTA 60.690 54.545 0.00 0.00 0.00 2.74
3678 3724 3.643237 CATGTACTCCCTCCCTCTGTAA 58.357 50.000 0.00 0.00 0.00 2.41
3679 3725 3.839323 TGTACTCCCTCCCTCTGTAAA 57.161 47.619 0.00 0.00 0.00 2.01
3680 3726 4.136341 TGTACTCCCTCCCTCTGTAAAA 57.864 45.455 0.00 0.00 0.00 1.52
3681 3727 4.495565 TGTACTCCCTCCCTCTGTAAAAA 58.504 43.478 0.00 0.00 0.00 1.94
3703 3749 6.867662 AAAATATGAGAGCATTTACGGAGG 57.132 37.500 0.00 0.00 35.94 4.30
3704 3750 2.918712 ATGAGAGCATTTACGGAGGG 57.081 50.000 0.00 0.00 0.00 4.30
3705 3751 1.860641 TGAGAGCATTTACGGAGGGA 58.139 50.000 0.00 0.00 0.00 4.20
3706 3752 1.757118 TGAGAGCATTTACGGAGGGAG 59.243 52.381 0.00 0.00 0.00 4.30
3707 3753 1.757699 GAGAGCATTTACGGAGGGAGT 59.242 52.381 0.00 0.00 0.00 3.85
3708 3754 2.957006 GAGAGCATTTACGGAGGGAGTA 59.043 50.000 0.00 0.00 0.00 2.59
3709 3755 3.371965 AGAGCATTTACGGAGGGAGTAA 58.628 45.455 0.00 0.00 32.84 2.24
3710 3756 3.385111 AGAGCATTTACGGAGGGAGTAAG 59.615 47.826 0.00 0.00 35.75 2.34
3720 3766 3.244457 CGGAGGGAGTAAGTTGGAACTTT 60.244 47.826 9.95 0.00 46.52 2.66
3724 3770 3.304458 GGGAGTAAGTTGGAACTTTTGCG 60.304 47.826 9.95 0.00 46.52 4.85
3735 3781 3.490078 GGAACTTTTGCGATTGTTGGTCA 60.490 43.478 0.00 0.00 0.00 4.02
3747 3793 6.481134 CGATTGTTGGTCATTTGATGTAGAG 58.519 40.000 0.00 0.00 0.00 2.43
3838 3960 4.778579 AGTGGATCAGATGAATCAACAGG 58.221 43.478 0.00 0.00 0.00 4.00
3927 4049 1.699730 AAACCCGGAGAAACCAAAGG 58.300 50.000 0.73 0.00 38.90 3.11
4043 4165 0.878416 TTGCCAACACGCACTATTCC 59.122 50.000 0.00 0.00 38.83 3.01
4065 4187 5.129320 TCCATAGAGCACACACATATCAGTT 59.871 40.000 0.00 0.00 0.00 3.16
4096 4218 6.694411 GGTCAGAATAAAAAGCATGCATACAG 59.306 38.462 21.98 0.00 0.00 2.74
4153 4275 4.699735 TCCTGCCAACATAACAACATGTAG 59.300 41.667 0.00 0.00 38.19 2.74
4154 4276 4.458989 CCTGCCAACATAACAACATGTAGT 59.541 41.667 0.00 0.00 38.19 2.73
4155 4277 5.645929 CCTGCCAACATAACAACATGTAGTA 59.354 40.000 0.00 0.00 38.19 1.82
4159 4281 8.670135 TGCCAACATAACAACATGTAGTAATAC 58.330 33.333 0.00 0.00 38.19 1.89
4329 4452 5.073311 AGTCAAATATATCGGATGACGGG 57.927 43.478 0.00 0.00 43.85 5.28
4333 4456 5.420739 TCAAATATATCGGATGACGGGATCA 59.579 40.000 0.00 0.00 44.45 2.92
4370 4600 4.982916 AGTACTTGTTAAACAGCTGACTCG 59.017 41.667 23.35 5.86 0.00 4.18
4373 4603 0.438830 GTTAAACAGCTGACTCGGCG 59.561 55.000 23.35 0.00 41.21 6.46
4401 4631 6.382869 AGATAAATGGTTCAGTGCAATAGC 57.617 37.500 0.00 0.00 42.57 2.97
4448 4678 4.207019 GTCAAAAATGTTGCTCCACTTTCG 59.793 41.667 0.00 0.00 0.00 3.46
4553 4783 1.620822 ACTGGAACAATGAAGCCCAC 58.379 50.000 0.00 0.00 38.70 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.385390 GTTGTTGTTCTGGGGTGCTG 59.615 55.000 0.00 0.00 0.00 4.41
1 2 0.755327 GGTTGTTGTTCTGGGGTGCT 60.755 55.000 0.00 0.00 0.00 4.40
2 3 0.755327 AGGTTGTTGTTCTGGGGTGC 60.755 55.000 0.00 0.00 0.00 5.01
3 4 1.681264 GAAGGTTGTTGTTCTGGGGTG 59.319 52.381 0.00 0.00 0.00 4.61
4 5 1.749286 CGAAGGTTGTTGTTCTGGGGT 60.749 52.381 0.00 0.00 0.00 4.95
5 6 0.951558 CGAAGGTTGTTGTTCTGGGG 59.048 55.000 0.00 0.00 0.00 4.96
6 7 0.310854 GCGAAGGTTGTTGTTCTGGG 59.689 55.000 0.00 0.00 0.00 4.45
7 8 0.310854 GGCGAAGGTTGTTGTTCTGG 59.689 55.000 0.00 0.00 0.00 3.86
8 9 0.041312 CGGCGAAGGTTGTTGTTCTG 60.041 55.000 0.00 0.00 0.00 3.02
9 10 0.179067 TCGGCGAAGGTTGTTGTTCT 60.179 50.000 7.35 0.00 0.00 3.01
10 11 0.872388 ATCGGCGAAGGTTGTTGTTC 59.128 50.000 15.93 0.00 0.00 3.18
11 12 0.591170 CATCGGCGAAGGTTGTTGTT 59.409 50.000 15.93 0.00 0.00 2.83
12 13 0.250124 TCATCGGCGAAGGTTGTTGT 60.250 50.000 15.93 0.00 0.00 3.32
13 14 0.871722 TTCATCGGCGAAGGTTGTTG 59.128 50.000 15.93 5.79 0.00 3.33
14 15 1.600023 TTTCATCGGCGAAGGTTGTT 58.400 45.000 15.93 0.00 0.00 2.83
15 16 1.600023 TTTTCATCGGCGAAGGTTGT 58.400 45.000 15.93 0.00 0.00 3.32
16 17 2.697431 TTTTTCATCGGCGAAGGTTG 57.303 45.000 15.93 7.94 0.00 3.77
17 18 4.670735 CGTTATTTTTCATCGGCGAAGGTT 60.671 41.667 15.93 0.00 0.00 3.50
18 19 3.181514 CGTTATTTTTCATCGGCGAAGGT 60.182 43.478 15.93 0.00 0.00 3.50
19 20 3.181514 ACGTTATTTTTCATCGGCGAAGG 60.182 43.478 15.93 9.89 0.00 3.46
20 21 3.998522 ACGTTATTTTTCATCGGCGAAG 58.001 40.909 15.93 10.47 0.00 3.79
21 22 4.863689 TCTACGTTATTTTTCATCGGCGAA 59.136 37.500 15.93 0.00 0.00 4.70
22 23 4.266029 GTCTACGTTATTTTTCATCGGCGA 59.734 41.667 13.87 13.87 0.00 5.54
23 24 4.031991 TGTCTACGTTATTTTTCATCGGCG 59.968 41.667 0.00 0.00 0.00 6.46
24 25 5.459110 TGTCTACGTTATTTTTCATCGGC 57.541 39.130 0.00 0.00 0.00 5.54
25 26 5.808540 TCCTGTCTACGTTATTTTTCATCGG 59.191 40.000 0.00 0.00 0.00 4.18
26 27 6.880822 TCCTGTCTACGTTATTTTTCATCG 57.119 37.500 0.00 0.00 0.00 3.84
27 28 7.548075 TCCTTCCTGTCTACGTTATTTTTCATC 59.452 37.037 0.00 0.00 0.00 2.92
28 29 7.391620 TCCTTCCTGTCTACGTTATTTTTCAT 58.608 34.615 0.00 0.00 0.00 2.57
29 30 6.761312 TCCTTCCTGTCTACGTTATTTTTCA 58.239 36.000 0.00 0.00 0.00 2.69
30 31 7.011202 GGATCCTTCCTGTCTACGTTATTTTTC 59.989 40.741 3.84 0.00 39.14 2.29
31 32 6.822170 GGATCCTTCCTGTCTACGTTATTTTT 59.178 38.462 3.84 0.00 39.14 1.94
32 33 6.070424 TGGATCCTTCCTGTCTACGTTATTTT 60.070 38.462 14.23 0.00 43.07 1.82
33 34 5.424252 TGGATCCTTCCTGTCTACGTTATTT 59.576 40.000 14.23 0.00 43.07 1.40
34 35 4.960469 TGGATCCTTCCTGTCTACGTTATT 59.040 41.667 14.23 0.00 43.07 1.40
35 36 4.543689 TGGATCCTTCCTGTCTACGTTAT 58.456 43.478 14.23 0.00 43.07 1.89
36 37 3.972133 TGGATCCTTCCTGTCTACGTTA 58.028 45.455 14.23 0.00 43.07 3.18
37 38 2.816411 TGGATCCTTCCTGTCTACGTT 58.184 47.619 14.23 0.00 43.07 3.99
38 39 2.526888 TGGATCCTTCCTGTCTACGT 57.473 50.000 14.23 0.00 43.07 3.57
39 40 3.522553 GTTTGGATCCTTCCTGTCTACG 58.477 50.000 14.23 0.00 43.07 3.51
40 41 3.679083 CGGTTTGGATCCTTCCTGTCTAC 60.679 52.174 14.23 0.00 43.07 2.59
41 42 2.500098 CGGTTTGGATCCTTCCTGTCTA 59.500 50.000 14.23 0.00 43.07 2.59
42 43 1.279271 CGGTTTGGATCCTTCCTGTCT 59.721 52.381 14.23 0.00 43.07 3.41
43 44 1.278127 TCGGTTTGGATCCTTCCTGTC 59.722 52.381 14.23 0.00 43.07 3.51
44 45 1.358152 TCGGTTTGGATCCTTCCTGT 58.642 50.000 14.23 0.00 43.07 4.00
45 46 2.359900 CTTCGGTTTGGATCCTTCCTG 58.640 52.381 14.23 5.52 43.07 3.86
46 47 1.282157 CCTTCGGTTTGGATCCTTCCT 59.718 52.381 14.23 0.00 43.07 3.36
47 48 1.751437 CCTTCGGTTTGGATCCTTCC 58.249 55.000 14.23 11.29 42.94 3.46
48 49 1.095600 GCCTTCGGTTTGGATCCTTC 58.904 55.000 14.23 3.17 0.00 3.46
49 50 0.404040 TGCCTTCGGTTTGGATCCTT 59.596 50.000 14.23 0.00 0.00 3.36
50 51 0.322546 GTGCCTTCGGTTTGGATCCT 60.323 55.000 14.23 0.00 0.00 3.24
51 52 0.608035 TGTGCCTTCGGTTTGGATCC 60.608 55.000 4.20 4.20 0.00 3.36
52 53 0.521735 GTGTGCCTTCGGTTTGGATC 59.478 55.000 0.00 0.00 0.00 3.36
53 54 1.234615 CGTGTGCCTTCGGTTTGGAT 61.235 55.000 0.00 0.00 0.00 3.41
54 55 1.890041 CGTGTGCCTTCGGTTTGGA 60.890 57.895 0.00 0.00 0.00 3.53
55 56 1.440938 TTCGTGTGCCTTCGGTTTGG 61.441 55.000 0.00 0.00 0.00 3.28
56 57 0.316689 GTTCGTGTGCCTTCGGTTTG 60.317 55.000 0.00 0.00 0.00 2.93
57 58 0.745128 TGTTCGTGTGCCTTCGGTTT 60.745 50.000 0.00 0.00 0.00 3.27
58 59 0.534203 ATGTTCGTGTGCCTTCGGTT 60.534 50.000 0.00 0.00 0.00 4.44
59 60 0.319083 TATGTTCGTGTGCCTTCGGT 59.681 50.000 0.00 0.00 0.00 4.69
60 61 0.999406 CTATGTTCGTGTGCCTTCGG 59.001 55.000 0.00 0.00 0.00 4.30
61 62 1.654105 GTCTATGTTCGTGTGCCTTCG 59.346 52.381 0.00 0.00 0.00 3.79
62 63 1.654105 CGTCTATGTTCGTGTGCCTTC 59.346 52.381 0.00 0.00 0.00 3.46
63 64 1.271379 TCGTCTATGTTCGTGTGCCTT 59.729 47.619 0.00 0.00 0.00 4.35
64 65 0.885879 TCGTCTATGTTCGTGTGCCT 59.114 50.000 0.00 0.00 0.00 4.75
65 66 1.389106 GTTCGTCTATGTTCGTGTGCC 59.611 52.381 0.00 0.00 0.00 5.01
66 67 2.055838 TGTTCGTCTATGTTCGTGTGC 58.944 47.619 0.00 0.00 0.00 4.57
67 68 3.420035 CGTTGTTCGTCTATGTTCGTGTG 60.420 47.826 0.00 0.00 34.52 3.82
68 69 2.722629 CGTTGTTCGTCTATGTTCGTGT 59.277 45.455 0.00 0.00 34.52 4.49
69 70 2.975193 TCGTTGTTCGTCTATGTTCGTG 59.025 45.455 0.00 0.00 40.80 4.35
70 71 2.975851 GTCGTTGTTCGTCTATGTTCGT 59.024 45.455 0.00 0.00 40.80 3.85
71 72 2.024875 CGTCGTTGTTCGTCTATGTTCG 59.975 50.000 0.00 0.00 40.80 3.95
72 73 3.228749 TCGTCGTTGTTCGTCTATGTTC 58.771 45.455 0.00 0.00 40.80 3.18
73 74 3.058708 TCTCGTCGTTGTTCGTCTATGTT 60.059 43.478 0.00 0.00 40.80 2.71
74 75 2.481568 TCTCGTCGTTGTTCGTCTATGT 59.518 45.455 0.00 0.00 40.80 2.29
75 76 3.113325 TCTCGTCGTTGTTCGTCTATG 57.887 47.619 0.00 0.00 40.80 2.23
76 77 3.242673 GGATCTCGTCGTTGTTCGTCTAT 60.243 47.826 0.00 0.00 40.80 1.98
77 78 2.094894 GGATCTCGTCGTTGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
78 79 1.135746 GGATCTCGTCGTTGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
79 80 1.257539 GGATCTCGTCGTTGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
80 81 0.453950 CGGATCTCGTCGTTGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
81 82 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.000 0.00 0.00 40.32 3.95
82 83 1.536149 CTCGGATCTCGTCGTTGTTC 58.464 55.000 0.00 0.00 40.32 3.18
83 84 0.456312 GCTCGGATCTCGTCGTTGTT 60.456 55.000 0.00 0.00 40.32 2.83
84 85 1.136984 GCTCGGATCTCGTCGTTGT 59.863 57.895 0.00 0.00 40.32 3.32
85 86 0.456142 TTGCTCGGATCTCGTCGTTG 60.456 55.000 0.00 0.00 40.32 4.10
86 87 0.242825 TTTGCTCGGATCTCGTCGTT 59.757 50.000 0.00 0.00 40.32 3.85
87 88 0.456221 ATTTGCTCGGATCTCGTCGT 59.544 50.000 0.00 0.00 40.32 4.34
88 89 1.124462 GATTTGCTCGGATCTCGTCG 58.876 55.000 0.00 0.00 40.32 5.12
89 90 1.202417 TGGATTTGCTCGGATCTCGTC 60.202 52.381 0.00 0.00 40.32 4.20
90 91 0.824109 TGGATTTGCTCGGATCTCGT 59.176 50.000 0.00 0.00 40.32 4.18
91 92 1.212616 GTGGATTTGCTCGGATCTCG 58.787 55.000 0.00 0.00 40.90 4.04
92 93 1.134401 TGGTGGATTTGCTCGGATCTC 60.134 52.381 0.00 0.00 0.00 2.75
93 94 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
94 95 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
95 96 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
96 97 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
97 98 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
98 99 4.191544 TCTATCTTTGGTGGATTTGCTCG 58.808 43.478 0.00 0.00 0.00 5.03
99 100 6.017275 CAGATCTATCTTTGGTGGATTTGCTC 60.017 42.308 0.00 0.00 34.22 4.26
100 101 5.826737 CAGATCTATCTTTGGTGGATTTGCT 59.173 40.000 0.00 0.00 34.22 3.91
101 102 5.506982 GCAGATCTATCTTTGGTGGATTTGC 60.507 44.000 0.00 4.53 37.36 3.68
102 103 5.009410 GGCAGATCTATCTTTGGTGGATTTG 59.991 44.000 0.00 0.00 34.22 2.32
103 104 5.136105 GGCAGATCTATCTTTGGTGGATTT 58.864 41.667 0.00 0.00 34.22 2.17
104 105 4.723309 GGCAGATCTATCTTTGGTGGATT 58.277 43.478 0.00 0.00 34.22 3.01
105 106 3.244353 CGGCAGATCTATCTTTGGTGGAT 60.244 47.826 0.00 0.00 34.22 3.41
106 107 2.103094 CGGCAGATCTATCTTTGGTGGA 59.897 50.000 0.00 0.00 34.22 4.02
107 108 2.487934 CGGCAGATCTATCTTTGGTGG 58.512 52.381 0.00 0.00 34.22 4.61
108 109 2.103094 TCCGGCAGATCTATCTTTGGTG 59.897 50.000 0.00 0.00 34.22 4.17
109 110 2.366916 CTCCGGCAGATCTATCTTTGGT 59.633 50.000 0.00 0.00 34.22 3.67
110 111 2.630098 TCTCCGGCAGATCTATCTTTGG 59.370 50.000 0.00 0.00 34.22 3.28
111 112 3.068732 TGTCTCCGGCAGATCTATCTTTG 59.931 47.826 0.00 0.00 34.22 2.77
112 113 3.068873 GTGTCTCCGGCAGATCTATCTTT 59.931 47.826 0.00 0.00 34.22 2.52
113 114 2.625790 GTGTCTCCGGCAGATCTATCTT 59.374 50.000 0.00 0.00 34.22 2.40
114 115 2.235016 GTGTCTCCGGCAGATCTATCT 58.765 52.381 0.00 0.00 37.72 1.98
115 116 1.957177 TGTGTCTCCGGCAGATCTATC 59.043 52.381 0.00 0.00 32.08 2.08
116 117 1.683917 GTGTGTCTCCGGCAGATCTAT 59.316 52.381 0.00 0.00 32.08 1.98
117 118 1.103803 GTGTGTCTCCGGCAGATCTA 58.896 55.000 0.00 0.00 32.08 1.98
118 119 1.608717 GGTGTGTCTCCGGCAGATCT 61.609 60.000 0.00 0.00 32.08 2.75
119 120 1.153549 GGTGTGTCTCCGGCAGATC 60.154 63.158 0.00 0.04 32.08 2.75
120 121 1.608717 GAGGTGTGTCTCCGGCAGAT 61.609 60.000 0.00 0.00 32.08 2.90
121 122 2.203640 AGGTGTGTCTCCGGCAGA 60.204 61.111 0.00 0.00 0.00 4.26
122 123 2.262915 GAGGTGTGTCTCCGGCAG 59.737 66.667 0.00 0.00 0.00 4.85
123 124 3.311110 GGAGGTGTGTCTCCGGCA 61.311 66.667 0.00 0.00 43.19 5.69
128 129 1.664965 GCGTGTGGAGGTGTGTCTC 60.665 63.158 0.00 0.00 0.00 3.36
129 130 2.421739 GCGTGTGGAGGTGTGTCT 59.578 61.111 0.00 0.00 0.00 3.41
130 131 2.665185 GGCGTGTGGAGGTGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
131 132 4.250305 GGGCGTGTGGAGGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
132 133 4.248842 TGGGCGTGTGGAGGTGTG 62.249 66.667 0.00 0.00 0.00 3.82
133 134 4.250305 GTGGGCGTGTGGAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
136 137 4.263572 TTGGTGGGCGTGTGGAGG 62.264 66.667 0.00 0.00 0.00 4.30
137 138 2.978010 GTTGGTGGGCGTGTGGAG 60.978 66.667 0.00 0.00 0.00 3.86
138 139 4.920112 CGTTGGTGGGCGTGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
139 140 4.920112 TCGTTGGTGGGCGTGTGG 62.920 66.667 0.00 0.00 0.00 4.17
140 141 2.668212 ATCGTTGGTGGGCGTGTG 60.668 61.111 0.00 0.00 0.00 3.82
141 142 2.668212 CATCGTTGGTGGGCGTGT 60.668 61.111 0.00 0.00 0.00 4.49
142 143 4.101790 GCATCGTTGGTGGGCGTG 62.102 66.667 0.00 0.00 0.00 5.34
143 144 4.329545 AGCATCGTTGGTGGGCGT 62.330 61.111 0.00 0.00 30.87 5.68
144 145 3.499737 GAGCATCGTTGGTGGGCG 61.500 66.667 2.35 0.00 32.62 6.13
170 171 4.851179 CCTAGCCCCCGTTTCGGC 62.851 72.222 2.41 0.00 46.86 5.54
173 174 4.851179 CCGCCTAGCCCCCGTTTC 62.851 72.222 0.00 0.00 0.00 2.78
181 182 4.862823 AGGTCTCCCCGCCTAGCC 62.863 72.222 0.00 0.00 38.74 3.93
182 183 1.047034 TAAAGGTCTCCCCGCCTAGC 61.047 60.000 0.00 0.00 38.74 3.42
183 184 1.718280 ATAAAGGTCTCCCCGCCTAG 58.282 55.000 0.00 0.00 38.74 3.02
184 185 2.044758 GAATAAAGGTCTCCCCGCCTA 58.955 52.381 0.00 0.00 38.74 3.93
185 186 0.837940 GAATAAAGGTCTCCCCGCCT 59.162 55.000 0.00 0.00 38.74 5.52
186 187 0.179026 GGAATAAAGGTCTCCCCGCC 60.179 60.000 0.00 0.00 38.74 6.13
187 188 0.544697 TGGAATAAAGGTCTCCCCGC 59.455 55.000 0.00 0.00 38.74 6.13
188 189 2.706190 AGATGGAATAAAGGTCTCCCCG 59.294 50.000 0.00 0.00 38.74 5.73
189 190 4.166144 TGAAGATGGAATAAAGGTCTCCCC 59.834 45.833 0.00 0.00 0.00 4.81
190 191 5.372373 CTGAAGATGGAATAAAGGTCTCCC 58.628 45.833 0.00 0.00 0.00 4.30
191 192 5.372373 CCTGAAGATGGAATAAAGGTCTCC 58.628 45.833 0.00 0.00 0.00 3.71
192 193 5.131142 TCCCTGAAGATGGAATAAAGGTCTC 59.869 44.000 0.00 0.00 0.00 3.36
193 194 5.039645 TCCCTGAAGATGGAATAAAGGTCT 58.960 41.667 0.00 0.00 0.00 3.85
194 195 5.372373 CTCCCTGAAGATGGAATAAAGGTC 58.628 45.833 0.00 0.00 0.00 3.85
195 196 4.385754 GCTCCCTGAAGATGGAATAAAGGT 60.386 45.833 0.00 0.00 0.00 3.50
196 197 4.140536 GCTCCCTGAAGATGGAATAAAGG 58.859 47.826 0.00 0.00 0.00 3.11
197 198 4.140536 GGCTCCCTGAAGATGGAATAAAG 58.859 47.826 0.00 0.00 0.00 1.85
198 199 3.433598 CGGCTCCCTGAAGATGGAATAAA 60.434 47.826 0.00 0.00 0.00 1.40
199 200 2.104792 CGGCTCCCTGAAGATGGAATAA 59.895 50.000 0.00 0.00 0.00 1.40
200 201 1.694150 CGGCTCCCTGAAGATGGAATA 59.306 52.381 0.00 0.00 0.00 1.75
201 202 0.471617 CGGCTCCCTGAAGATGGAAT 59.528 55.000 0.00 0.00 0.00 3.01
202 203 0.909610 ACGGCTCCCTGAAGATGGAA 60.910 55.000 0.00 0.00 0.00 3.53
203 204 1.306141 ACGGCTCCCTGAAGATGGA 60.306 57.895 0.00 0.00 0.00 3.41
204 205 1.144936 GACGGCTCCCTGAAGATGG 59.855 63.158 0.00 0.00 0.00 3.51
205 206 1.227089 CGACGGCTCCCTGAAGATG 60.227 63.158 0.00 0.00 0.00 2.90
206 207 3.082579 GCGACGGCTCCCTGAAGAT 62.083 63.158 0.00 0.00 35.83 2.40
207 208 3.760035 GCGACGGCTCCCTGAAGA 61.760 66.667 0.00 0.00 35.83 2.87
208 209 4.821589 GGCGACGGCTCCCTGAAG 62.822 72.222 15.00 0.00 39.81 3.02
224 225 0.744874 TATTCAGGAAGGCGAGACGG 59.255 55.000 0.00 0.00 0.00 4.79
225 226 1.269309 CCTATTCAGGAAGGCGAGACG 60.269 57.143 0.00 0.00 45.91 4.18
226 227 2.517650 CCTATTCAGGAAGGCGAGAC 57.482 55.000 0.00 0.00 45.91 3.36
236 237 3.721087 AGGGTTTGTGTCCTATTCAGG 57.279 47.619 0.00 0.00 44.17 3.86
237 238 5.556915 TGTTAGGGTTTGTGTCCTATTCAG 58.443 41.667 0.00 0.00 35.75 3.02
238 239 5.570205 TGTTAGGGTTTGTGTCCTATTCA 57.430 39.130 0.00 0.00 35.75 2.57
239 240 6.235664 TCTTGTTAGGGTTTGTGTCCTATTC 58.764 40.000 0.00 0.00 35.75 1.75
240 241 6.195600 TCTTGTTAGGGTTTGTGTCCTATT 57.804 37.500 0.00 0.00 35.75 1.73
241 242 5.836024 TCTTGTTAGGGTTTGTGTCCTAT 57.164 39.130 0.00 0.00 35.75 2.57
242 243 5.836024 ATCTTGTTAGGGTTTGTGTCCTA 57.164 39.130 0.00 0.00 34.75 2.94
243 244 4.724279 ATCTTGTTAGGGTTTGTGTCCT 57.276 40.909 0.00 0.00 37.18 3.85
244 245 4.825085 TCAATCTTGTTAGGGTTTGTGTCC 59.175 41.667 0.00 0.00 0.00 4.02
245 246 6.385649 TTCAATCTTGTTAGGGTTTGTGTC 57.614 37.500 0.00 0.00 0.00 3.67
246 247 6.783708 TTTCAATCTTGTTAGGGTTTGTGT 57.216 33.333 0.00 0.00 0.00 3.72
269 270 3.243168 GGGCTCCGTTTTTAGTCGTTTTT 60.243 43.478 0.00 0.00 0.00 1.94
270 271 2.291465 GGGCTCCGTTTTTAGTCGTTTT 59.709 45.455 0.00 0.00 0.00 2.43
271 272 1.875514 GGGCTCCGTTTTTAGTCGTTT 59.124 47.619 0.00 0.00 0.00 3.60
272 273 1.071228 AGGGCTCCGTTTTTAGTCGTT 59.929 47.619 0.00 0.00 0.00 3.85
273 274 0.683412 AGGGCTCCGTTTTTAGTCGT 59.317 50.000 0.00 0.00 0.00 4.34
274 275 1.356938 GAGGGCTCCGTTTTTAGTCG 58.643 55.000 0.00 0.00 0.00 4.18
275 276 1.735386 GGAGGGCTCCGTTTTTAGTC 58.265 55.000 0.00 0.00 40.36 2.59
276 277 3.950869 GGAGGGCTCCGTTTTTAGT 57.049 52.632 0.00 0.00 40.36 2.24
300 301 2.440980 GTGGATCCTGGCAAGGGC 60.441 66.667 14.23 0.00 44.62 5.19
301 302 2.276740 GGTGGATCCTGGCAAGGG 59.723 66.667 14.23 0.00 44.62 3.95
302 303 2.124570 CGGTGGATCCTGGCAAGG 60.125 66.667 14.23 0.00 46.06 3.61
303 304 2.825836 GCGGTGGATCCTGGCAAG 60.826 66.667 14.23 0.00 0.00 4.01
304 305 4.776322 CGCGGTGGATCCTGGCAA 62.776 66.667 14.23 0.00 0.00 4.52
308 309 4.899239 GAGGCGCGGTGGATCCTG 62.899 72.222 14.23 4.04 0.00 3.86
311 312 4.241555 ATGGAGGCGCGGTGGATC 62.242 66.667 8.83 0.00 0.00 3.36
312 313 4.552365 CATGGAGGCGCGGTGGAT 62.552 66.667 8.83 0.00 0.00 3.41
318 319 3.506059 CTAGGACCATGGAGGCGCG 62.506 68.421 21.47 0.00 43.14 6.86
319 320 2.423446 CTAGGACCATGGAGGCGC 59.577 66.667 21.47 0.00 43.14 6.53
320 321 2.511452 CCCTAGGACCATGGAGGCG 61.511 68.421 21.47 5.12 43.14 5.52
321 322 2.823758 GCCCTAGGACCATGGAGGC 61.824 68.421 21.47 15.67 43.14 4.70
322 323 2.150051 GGCCCTAGGACCATGGAGG 61.150 68.421 21.47 14.67 45.67 4.30
323 324 0.769776 ATGGCCCTAGGACCATGGAG 60.770 60.000 27.39 4.77 45.03 3.86
324 325 0.768221 GATGGCCCTAGGACCATGGA 60.768 60.000 32.23 4.14 46.72 3.41
325 326 1.763770 GATGGCCCTAGGACCATGG 59.236 63.158 32.23 11.19 46.72 3.66
326 327 1.372683 CGATGGCCCTAGGACCATG 59.627 63.158 32.23 19.99 46.72 3.66
328 329 2.445845 CCGATGGCCCTAGGACCA 60.446 66.667 20.31 20.31 41.06 4.02
329 330 2.122989 TCCGATGGCCCTAGGACC 60.123 66.667 11.48 9.29 0.00 4.46
330 331 1.152525 TCTCCGATGGCCCTAGGAC 60.153 63.158 11.48 0.00 0.00 3.85
331 332 1.152525 GTCTCCGATGGCCCTAGGA 60.153 63.158 11.48 9.46 0.00 2.94
332 333 2.565645 CGTCTCCGATGGCCCTAGG 61.566 68.421 0.06 0.06 35.63 3.02
333 334 1.519751 CTCGTCTCCGATGGCCCTAG 61.520 65.000 0.00 0.00 43.27 3.02
334 335 1.528542 CTCGTCTCCGATGGCCCTA 60.529 63.158 0.00 0.00 43.27 3.53
335 336 2.835431 CTCGTCTCCGATGGCCCT 60.835 66.667 0.00 0.00 43.27 5.19
336 337 2.833582 TCTCGTCTCCGATGGCCC 60.834 66.667 0.00 0.00 43.27 5.80
337 338 2.413765 GTCTCGTCTCCGATGGCC 59.586 66.667 0.00 0.00 43.27 5.36
338 339 2.024871 CGTCTCGTCTCCGATGGC 59.975 66.667 0.00 0.00 43.27 4.40
339 340 1.818363 TCCGTCTCGTCTCCGATGG 60.818 63.158 0.00 0.00 43.27 3.51
340 341 1.352404 GTCCGTCTCGTCTCCGATG 59.648 63.158 0.00 0.00 43.27 3.84
341 342 1.818785 GGTCCGTCTCGTCTCCGAT 60.819 63.158 0.00 0.00 43.27 4.18
342 343 2.435586 GGTCCGTCTCGTCTCCGA 60.436 66.667 0.00 0.00 41.73 4.55
343 344 2.436292 AGGTCCGTCTCGTCTCCG 60.436 66.667 0.00 0.00 0.00 4.63
344 345 3.053849 GCAGGTCCGTCTCGTCTCC 62.054 68.421 0.00 0.00 0.00 3.71
345 346 2.486042 GCAGGTCCGTCTCGTCTC 59.514 66.667 0.00 0.00 0.00 3.36
346 347 3.432588 CGCAGGTCCGTCTCGTCT 61.433 66.667 0.00 0.00 0.00 4.18
373 374 2.221906 TTAGGGTTCGTGCCTCTCGC 62.222 60.000 0.00 0.00 38.31 5.03
374 375 0.458025 GTTAGGGTTCGTGCCTCTCG 60.458 60.000 0.00 0.00 0.00 4.04
375 376 0.896226 AGTTAGGGTTCGTGCCTCTC 59.104 55.000 0.00 0.00 0.00 3.20
376 377 1.349067 AAGTTAGGGTTCGTGCCTCT 58.651 50.000 0.00 0.00 0.00 3.69
377 378 2.074576 GAAAGTTAGGGTTCGTGCCTC 58.925 52.381 0.00 0.00 0.00 4.70
378 379 1.697982 AGAAAGTTAGGGTTCGTGCCT 59.302 47.619 0.00 0.00 0.00 4.75
379 380 2.180432 AGAAAGTTAGGGTTCGTGCC 57.820 50.000 0.00 0.00 0.00 5.01
380 381 3.813724 AGAAAGAAAGTTAGGGTTCGTGC 59.186 43.478 0.00 0.00 0.00 5.34
381 382 5.526111 TCAAGAAAGAAAGTTAGGGTTCGTG 59.474 40.000 0.00 0.00 0.00 4.35
382 383 5.677567 TCAAGAAAGAAAGTTAGGGTTCGT 58.322 37.500 0.00 0.00 0.00 3.85
383 384 6.293462 CCTTCAAGAAAGAAAGTTAGGGTTCG 60.293 42.308 0.00 0.00 37.12 3.95
384 385 6.771267 TCCTTCAAGAAAGAAAGTTAGGGTTC 59.229 38.462 0.00 0.00 37.12 3.62
385 386 6.669631 TCCTTCAAGAAAGAAAGTTAGGGTT 58.330 36.000 0.00 0.00 37.12 4.11
386 387 6.262056 TCCTTCAAGAAAGAAAGTTAGGGT 57.738 37.500 0.00 0.00 37.12 4.34
387 388 5.707764 CCTCCTTCAAGAAAGAAAGTTAGGG 59.292 44.000 0.00 0.00 37.12 3.53
388 389 6.534634 TCCTCCTTCAAGAAAGAAAGTTAGG 58.465 40.000 0.00 0.00 37.12 2.69
389 390 6.652900 CCTCCTCCTTCAAGAAAGAAAGTTAG 59.347 42.308 0.00 0.00 37.12 2.34
390 391 6.329197 TCCTCCTCCTTCAAGAAAGAAAGTTA 59.671 38.462 0.00 0.00 37.12 2.24
391 392 5.132816 TCCTCCTCCTTCAAGAAAGAAAGTT 59.867 40.000 0.00 0.00 37.12 2.66
392 393 4.660771 TCCTCCTCCTTCAAGAAAGAAAGT 59.339 41.667 0.00 0.00 37.12 2.66
393 394 5.234466 TCCTCCTCCTTCAAGAAAGAAAG 57.766 43.478 0.00 0.00 37.12 2.62
394 395 4.042187 CCTCCTCCTCCTTCAAGAAAGAAA 59.958 45.833 0.00 0.00 37.12 2.52
395 396 3.584848 CCTCCTCCTCCTTCAAGAAAGAA 59.415 47.826 0.00 0.00 37.12 2.52
396 397 3.177228 CCTCCTCCTCCTTCAAGAAAGA 58.823 50.000 0.00 0.00 37.12 2.52
397 398 3.177228 TCCTCCTCCTCCTTCAAGAAAG 58.823 50.000 0.00 0.00 34.52 2.62
398 399 3.177228 CTCCTCCTCCTCCTTCAAGAAA 58.823 50.000 0.00 0.00 0.00 2.52
399 400 2.560841 CCTCCTCCTCCTCCTTCAAGAA 60.561 54.545 0.00 0.00 0.00 2.52
400 401 1.007721 CCTCCTCCTCCTCCTTCAAGA 59.992 57.143 0.00 0.00 0.00 3.02
401 402 1.007721 TCCTCCTCCTCCTCCTTCAAG 59.992 57.143 0.00 0.00 0.00 3.02
402 403 1.007721 CTCCTCCTCCTCCTCCTTCAA 59.992 57.143 0.00 0.00 0.00 2.69
403 404 0.633921 CTCCTCCTCCTCCTCCTTCA 59.366 60.000 0.00 0.00 0.00 3.02
404 405 0.105709 CCTCCTCCTCCTCCTCCTTC 60.106 65.000 0.00 0.00 0.00 3.46
405 406 2.023532 CCTCCTCCTCCTCCTCCTT 58.976 63.158 0.00 0.00 0.00 3.36
406 407 2.710826 GCCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
407 408 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
408 409 2.123033 GGCCTCCTCCTCCTCCTC 60.123 72.222 0.00 0.00 0.00 3.71
409 410 2.260524 AAGGCCTCCTCCTCCTCCT 61.261 63.158 5.23 0.00 34.82 3.69
410 411 2.069430 CAAGGCCTCCTCCTCCTCC 61.069 68.421 5.23 0.00 34.82 4.30
411 412 2.741055 GCAAGGCCTCCTCCTCCTC 61.741 68.421 5.23 0.00 34.82 3.71
412 413 2.690510 GCAAGGCCTCCTCCTCCT 60.691 66.667 5.23 0.00 34.82 3.69
413 414 2.690510 AGCAAGGCCTCCTCCTCC 60.691 66.667 5.23 0.00 34.82 4.30
414 415 1.992277 TGAGCAAGGCCTCCTCCTC 60.992 63.158 23.39 17.97 34.82 3.71
415 416 2.123632 TGAGCAAGGCCTCCTCCT 59.876 61.111 23.39 11.31 38.31 3.69
416 417 2.270527 GTGAGCAAGGCCTCCTCC 59.729 66.667 23.39 14.54 30.89 4.30
417 418 1.605058 TACGTGAGCAAGGCCTCCTC 61.605 60.000 20.91 20.91 30.89 3.71
418 419 1.609501 TACGTGAGCAAGGCCTCCT 60.610 57.895 5.23 5.47 33.87 3.69
419 420 1.448013 GTACGTGAGCAAGGCCTCC 60.448 63.158 5.23 0.00 0.00 4.30
420 421 0.815734 TAGTACGTGAGCAAGGCCTC 59.184 55.000 5.23 0.00 0.00 4.70
421 422 1.409427 GATAGTACGTGAGCAAGGCCT 59.591 52.381 0.00 0.00 0.00 5.19
422 423 1.538419 GGATAGTACGTGAGCAAGGCC 60.538 57.143 0.00 0.00 0.00 5.19
423 424 1.136305 TGGATAGTACGTGAGCAAGGC 59.864 52.381 0.00 0.00 0.00 4.35
424 425 3.448686 CTTGGATAGTACGTGAGCAAGG 58.551 50.000 0.00 0.00 0.00 3.61
425 426 3.130516 TCCTTGGATAGTACGTGAGCAAG 59.869 47.826 0.00 0.00 0.00 4.01
426 427 3.093814 TCCTTGGATAGTACGTGAGCAA 58.906 45.455 0.00 0.00 0.00 3.91
427 428 2.730382 TCCTTGGATAGTACGTGAGCA 58.270 47.619 0.00 0.00 0.00 4.26
428 429 3.795623 TTCCTTGGATAGTACGTGAGC 57.204 47.619 0.00 0.00 0.00 4.26
429 430 4.051922 GCATTCCTTGGATAGTACGTGAG 58.948 47.826 0.00 0.00 0.00 3.51
430 431 3.449377 TGCATTCCTTGGATAGTACGTGA 59.551 43.478 0.00 0.00 0.00 4.35
431 432 3.792401 TGCATTCCTTGGATAGTACGTG 58.208 45.455 0.00 0.00 0.00 4.49
432 433 4.503296 GGATGCATTCCTTGGATAGTACGT 60.503 45.833 0.00 0.00 41.78 3.57
433 434 3.997021 GGATGCATTCCTTGGATAGTACG 59.003 47.826 0.00 0.00 41.78 3.67
434 435 4.973168 TGGATGCATTCCTTGGATAGTAC 58.027 43.478 1.51 0.00 45.68 2.73
435 436 5.132648 ACTTGGATGCATTCCTTGGATAGTA 59.867 40.000 1.51 0.00 45.68 1.82
436 437 4.079558 ACTTGGATGCATTCCTTGGATAGT 60.080 41.667 1.51 1.75 45.68 2.12
437 438 4.467769 ACTTGGATGCATTCCTTGGATAG 58.532 43.478 1.51 1.25 45.68 2.08
438 439 4.524802 ACTTGGATGCATTCCTTGGATA 57.475 40.909 1.51 0.00 45.68 2.59
439 440 3.393426 ACTTGGATGCATTCCTTGGAT 57.607 42.857 1.51 0.00 45.68 3.41
440 441 2.905415 ACTTGGATGCATTCCTTGGA 57.095 45.000 1.51 0.00 45.68 3.53
441 442 3.571401 GGATACTTGGATGCATTCCTTGG 59.429 47.826 1.51 2.77 45.68 3.61
442 443 3.571401 GGGATACTTGGATGCATTCCTTG 59.429 47.826 1.51 4.89 45.68 3.61
443 444 3.437052 GGGGATACTTGGATGCATTCCTT 60.437 47.826 1.51 0.00 45.68 3.36
444 445 2.108952 GGGGATACTTGGATGCATTCCT 59.891 50.000 1.51 0.00 45.68 3.36
445 446 2.158475 TGGGGATACTTGGATGCATTCC 60.158 50.000 1.51 2.47 45.69 3.01
446 447 3.152341 CTGGGGATACTTGGATGCATTC 58.848 50.000 0.00 0.00 0.00 2.67
447 448 2.785269 TCTGGGGATACTTGGATGCATT 59.215 45.455 0.00 0.00 0.00 3.56
448 449 2.421725 TCTGGGGATACTTGGATGCAT 58.578 47.619 0.00 0.00 0.00 3.96
449 450 1.891933 TCTGGGGATACTTGGATGCA 58.108 50.000 0.00 0.00 0.00 3.96
450 451 3.515602 ATTCTGGGGATACTTGGATGC 57.484 47.619 0.00 0.00 0.00 3.91
451 452 5.203528 ACAAATTCTGGGGATACTTGGATG 58.796 41.667 0.00 0.00 0.00 3.51
452 453 5.194537 AGACAAATTCTGGGGATACTTGGAT 59.805 40.000 0.00 0.00 31.12 3.41
453 454 4.540099 AGACAAATTCTGGGGATACTTGGA 59.460 41.667 0.00 0.00 31.12 3.53
454 455 4.860022 AGACAAATTCTGGGGATACTTGG 58.140 43.478 0.00 0.00 31.12 3.61
530 532 8.331022 GCTGATACACTGTTATACACAATGAAG 58.669 37.037 0.00 0.00 34.30 3.02
538 540 5.878116 GGGTTTGCTGATACACTGTTATACA 59.122 40.000 0.00 0.00 0.00 2.29
546 548 3.270877 GAATCGGGTTTGCTGATACACT 58.729 45.455 0.00 0.00 0.00 3.55
592 594 1.266446 CATCATGTTCCGTTGTGCACA 59.734 47.619 17.42 17.42 0.00 4.57
603 605 5.741510 TGTTTCAACGTGTTTCATCATGTTC 59.258 36.000 0.00 0.00 43.05 3.18
614 616 4.085004 CGGTTTTGTTTGTTTCAACGTGTT 60.085 37.500 0.00 0.00 0.00 3.32
619 621 4.382160 TCGTTCGGTTTTGTTTGTTTCAAC 59.618 37.500 0.00 0.00 0.00 3.18
665 668 7.041235 CCGTACCATACTTTTTAGGTTGTCAAA 60.041 37.037 0.00 0.00 35.62 2.69
684 687 1.847328 TTGCTCTGAGATCCGTACCA 58.153 50.000 9.28 0.00 0.00 3.25
685 688 2.362397 TGATTGCTCTGAGATCCGTACC 59.638 50.000 9.28 0.00 0.00 3.34
686 689 3.376540 GTGATTGCTCTGAGATCCGTAC 58.623 50.000 9.28 0.00 0.00 3.67
687 690 2.033424 CGTGATTGCTCTGAGATCCGTA 59.967 50.000 9.28 0.00 0.00 4.02
688 691 1.202348 CGTGATTGCTCTGAGATCCGT 60.202 52.381 9.28 0.00 0.00 4.69
718 721 1.689243 CGGGAGATCCTGTGCATGGA 61.689 60.000 12.76 12.76 37.62 3.41
719 722 1.227764 CGGGAGATCCTGTGCATGG 60.228 63.158 0.00 0.00 37.62 3.66
720 723 4.451241 CGGGAGATCCTGTGCATG 57.549 61.111 0.00 0.00 37.62 4.06
727 730 2.091830 TCTGTCATACACGGGAGATCCT 60.092 50.000 0.00 0.00 35.95 3.24
728 731 2.307768 TCTGTCATACACGGGAGATCC 58.692 52.381 0.00 0.00 31.32 3.36
729 732 5.707242 TTATCTGTCATACACGGGAGATC 57.293 43.478 0.00 0.00 31.32 2.75
730 733 5.221461 GGTTTATCTGTCATACACGGGAGAT 60.221 44.000 0.00 0.00 31.32 2.75
731 734 4.098960 GGTTTATCTGTCATACACGGGAGA 59.901 45.833 0.00 0.00 31.32 3.71
732 735 4.142026 TGGTTTATCTGTCATACACGGGAG 60.142 45.833 0.00 0.00 31.32 4.30
733 736 3.770388 TGGTTTATCTGTCATACACGGGA 59.230 43.478 0.00 0.00 31.32 5.14
734 737 3.869246 GTGGTTTATCTGTCATACACGGG 59.131 47.826 0.00 0.00 31.32 5.28
735 738 4.755411 AGTGGTTTATCTGTCATACACGG 58.245 43.478 0.00 0.00 33.18 4.94
736 739 5.651530 AGAGTGGTTTATCTGTCATACACG 58.348 41.667 0.00 0.00 33.18 4.49
737 740 7.907214 AAAGAGTGGTTTATCTGTCATACAC 57.093 36.000 0.00 0.00 0.00 2.90
747 750 9.232473 GGGGATCAATATAAAGAGTGGTTTATC 57.768 37.037 0.00 0.00 34.93 1.75
748 751 8.960064 AGGGGATCAATATAAAGAGTGGTTTAT 58.040 33.333 0.00 0.00 36.70 1.40
749 752 8.344939 AGGGGATCAATATAAAGAGTGGTTTA 57.655 34.615 0.00 0.00 0.00 2.01
760 763 8.723365 ACAACATTACAGAGGGGATCAATATAA 58.277 33.333 0.00 0.00 0.00 0.98
768 771 3.370527 CGGAACAACATTACAGAGGGGAT 60.371 47.826 0.00 0.00 0.00 3.85
782 786 3.604875 TCTTCATACTCCCGGAACAAC 57.395 47.619 0.73 0.00 0.00 3.32
857 869 1.911293 GCATCGTTTGGCTTCTGCGA 61.911 55.000 0.00 0.00 40.82 5.10
858 870 1.512734 GCATCGTTTGGCTTCTGCG 60.513 57.895 0.00 0.00 40.82 5.18
876 888 1.927174 GACGAACGAACATGAGGGATG 59.073 52.381 0.00 0.00 38.15 3.51
945 965 3.471244 GAGGAGGGTGTCGATCGCG 62.471 68.421 11.09 0.00 39.35 5.87
958 978 2.657102 GATTGCCGGCCTCTGAGGAG 62.657 65.000 27.53 18.40 37.67 3.69
959 979 2.688666 ATTGCCGGCCTCTGAGGA 60.689 61.111 27.53 5.40 37.67 3.71
961 981 0.465705 TAAGATTGCCGGCCTCTGAG 59.534 55.000 26.77 0.00 0.00 3.35
962 982 0.465705 CTAAGATTGCCGGCCTCTGA 59.534 55.000 26.77 17.75 0.00 3.27
963 983 0.533755 CCTAAGATTGCCGGCCTCTG 60.534 60.000 26.77 14.18 0.00 3.35
964 984 1.832912 CCTAAGATTGCCGGCCTCT 59.167 57.895 26.77 22.71 0.00 3.69
966 986 2.193248 GCCTAAGATTGCCGGCCT 59.807 61.111 26.77 11.52 36.56 5.19
971 991 1.823899 CCCACGGCCTAAGATTGCC 60.824 63.158 0.00 0.00 44.41 4.52
973 993 0.810031 CGTCCCACGGCCTAAGATTG 60.810 60.000 0.00 0.00 38.08 2.67
974 994 0.974010 TCGTCCCACGGCCTAAGATT 60.974 55.000 0.00 0.00 42.81 2.40
975 995 0.759436 ATCGTCCCACGGCCTAAGAT 60.759 55.000 0.00 0.00 42.81 2.40
977 997 0.748450 TTATCGTCCCACGGCCTAAG 59.252 55.000 0.00 0.00 42.81 2.18
978 998 1.342174 GATTATCGTCCCACGGCCTAA 59.658 52.381 0.00 0.00 42.81 2.69
979 999 0.963962 GATTATCGTCCCACGGCCTA 59.036 55.000 0.00 0.00 42.81 3.93
980 1000 1.746517 GATTATCGTCCCACGGCCT 59.253 57.895 0.00 0.00 42.81 5.19
981 1001 1.663702 CGATTATCGTCCCACGGCC 60.664 63.158 6.43 0.00 42.81 6.13
982 1002 0.038526 ATCGATTATCGTCCCACGGC 60.039 55.000 14.47 0.00 42.81 5.68
983 1003 1.668919 CCATCGATTATCGTCCCACGG 60.669 57.143 14.47 3.92 42.81 4.94
984 1004 1.268625 TCCATCGATTATCGTCCCACG 59.731 52.381 14.47 0.00 44.19 4.94
990 1010 1.244816 TCGGCTCCATCGATTATCGT 58.755 50.000 14.47 0.00 41.35 3.73
1056 1076 2.203252 CATGGCGGGATGGTCTGG 60.203 66.667 0.00 0.00 0.00 3.86
1361 1381 0.744874 ATTCATGGACGACGACCGAT 59.255 50.000 11.62 4.08 41.76 4.18
1365 1385 2.455032 CAGAGATTCATGGACGACGAC 58.545 52.381 0.00 0.00 0.00 4.34
1372 1392 0.105593 GCCGAGCAGAGATTCATGGA 59.894 55.000 0.00 0.00 0.00 3.41
1391 1414 1.644786 GAAATCAACGGACCGGCCAG 61.645 60.000 20.00 4.83 35.94 4.85
1392 1415 1.673009 GAAATCAACGGACCGGCCA 60.673 57.895 20.00 0.59 35.94 5.36
1402 1425 1.187055 GCAAACACACGCGAAATCAAC 59.813 47.619 15.93 0.00 0.00 3.18
1424 1447 3.203716 GAACCCTCCTAATTAGCAACGG 58.796 50.000 6.99 5.89 0.00 4.44
1430 1453 2.035576 CGACCCGAACCCTCCTAATTAG 59.964 54.545 5.43 5.43 0.00 1.73
1506 1533 2.594962 CGCTGACGTTTCTGCCGTT 61.595 57.895 0.00 0.00 42.29 4.44
1535 1562 0.401395 AGAAGGCCATAATCCGGGGA 60.401 55.000 5.01 0.00 0.00 4.81
1624 1651 4.379813 CGGTTCAAGTTTCATCTCATTGGG 60.380 45.833 0.00 0.00 0.00 4.12
1635 1662 2.824347 CGACGTACGGTTCAAGTTTC 57.176 50.000 21.06 3.44 38.46 2.78
1661 1688 4.583489 AGAGCTAGTATAAGTTAAGGCGCA 59.417 41.667 10.83 0.00 0.00 6.09
1664 1691 7.364970 GTCAGAGAGCTAGTATAAGTTAAGGC 58.635 42.308 0.00 0.00 0.00 4.35
1676 1703 2.095461 TGAATGCGTCAGAGAGCTAGT 58.905 47.619 0.00 0.00 0.00 2.57
1677 1704 2.859526 TGAATGCGTCAGAGAGCTAG 57.140 50.000 0.00 0.00 0.00 3.42
1689 1720 1.643292 CCGGCACAGTATGAATGCG 59.357 57.895 0.00 0.00 38.81 4.73
1696 1727 1.901654 TTAACCGGCCGGCACAGTAT 61.902 55.000 43.58 20.64 39.32 2.12
1776 1810 3.118261 GGGTATGGAAGCTGTTGATGAGA 60.118 47.826 0.00 0.00 0.00 3.27
1844 1878 3.619038 GCAGTAGCTAGGTTTCATGTGAC 59.381 47.826 0.00 0.00 37.91 3.67
1859 1893 1.932511 GAGTTGAGCATGAGCAGTAGC 59.067 52.381 0.00 0.00 45.49 3.58
1863 1897 1.088340 CCGGAGTTGAGCATGAGCAG 61.088 60.000 0.00 0.00 45.49 4.24
1864 1898 1.078918 CCGGAGTTGAGCATGAGCA 60.079 57.895 0.00 0.00 45.49 4.26
1869 1903 0.613260 TTGCTACCGGAGTTGAGCAT 59.387 50.000 9.46 0.00 44.02 3.79
1916 1950 2.622064 AGGCACTCCAATCGATTACC 57.378 50.000 10.97 5.94 33.74 2.85
1923 1957 7.462844 TGTTAAGAAACAGAGGCACTCCAATC 61.463 42.308 0.00 0.00 44.53 2.67
1943 1977 4.127171 GAGACACTTGCTTCCTGTGTTAA 58.873 43.478 0.00 0.00 43.81 2.01
1976 2010 0.890996 AAAAGCTTCCCAGGCACGAG 60.891 55.000 0.00 0.00 0.00 4.18
2003 2037 5.433526 CCGGAGTAAAACCATTGGAAGATA 58.566 41.667 10.37 0.00 0.00 1.98
2036 2070 1.457346 GGAAGAAGGTCATGCCACAG 58.543 55.000 8.58 0.00 40.61 3.66
2104 2142 0.100682 GGAGCGCGACATGTAGAAGA 59.899 55.000 12.10 0.00 0.00 2.87
2105 2144 0.179137 TGGAGCGCGACATGTAGAAG 60.179 55.000 12.10 4.01 0.00 2.85
2119 2158 2.739379 GCAAGTAGTTCTCAGTTGGAGC 59.261 50.000 0.00 0.00 43.70 4.70
2127 2166 6.830838 TGATCATCTCTAGCAAGTAGTTCTCA 59.169 38.462 0.00 0.00 0.00 3.27
2157 2196 5.230942 AGTATCACACAACACAAGTAGCTC 58.769 41.667 0.00 0.00 0.00 4.09
2278 2317 1.779092 CCACATGAATCCCCAGGAGAT 59.221 52.381 0.00 0.00 34.05 2.75
2373 2412 1.263217 CAGAAACCACGCACCTTGTAC 59.737 52.381 0.00 0.00 0.00 2.90
2386 2425 1.201647 TCTGTCGGTCGATCAGAAACC 59.798 52.381 16.81 0.00 35.65 3.27
2401 2440 2.280183 GCATGTCTCGTCGAAATCTGTC 59.720 50.000 0.00 0.00 0.00 3.51
2424 2463 2.615618 GAATAGAGCGTGCGTGCG 59.384 61.111 0.00 0.00 40.67 5.34
2818 2857 1.671379 GAAGTTGGTCTCGGCCACC 60.671 63.158 2.24 3.10 38.42 4.61
2942 2981 3.148279 GGAGGCGGTGGAGACGAT 61.148 66.667 0.00 0.00 0.00 3.73
3022 3061 2.187946 GTCCCGATGACCTGGCTG 59.812 66.667 0.00 0.00 38.09 4.85
3424 3463 4.899239 CAGATGAGCCCGGACGCC 62.899 72.222 0.73 0.00 0.00 5.68
3590 3629 2.033602 GGAAGGGTTGGGTGTCGG 59.966 66.667 0.00 0.00 0.00 4.79
3620 3659 1.953686 TCGTCGTATCATCATGGCAGA 59.046 47.619 0.00 0.00 0.00 4.26
3679 3725 6.263168 CCCTCCGTAAATGCTCTCATATTTTT 59.737 38.462 0.00 0.00 31.46 1.94
3680 3726 5.765182 CCCTCCGTAAATGCTCTCATATTTT 59.235 40.000 0.00 0.00 31.46 1.82
3681 3727 5.071788 TCCCTCCGTAAATGCTCTCATATTT 59.928 40.000 0.00 0.00 31.46 1.40
3682 3728 4.593206 TCCCTCCGTAAATGCTCTCATATT 59.407 41.667 0.00 0.00 31.46 1.28
3683 3729 4.160329 TCCCTCCGTAAATGCTCTCATAT 58.840 43.478 0.00 0.00 31.46 1.78
3684 3730 3.572642 TCCCTCCGTAAATGCTCTCATA 58.427 45.455 0.00 0.00 31.46 2.15
3685 3731 2.366916 CTCCCTCCGTAAATGCTCTCAT 59.633 50.000 0.00 0.00 33.53 2.90
3686 3732 1.757118 CTCCCTCCGTAAATGCTCTCA 59.243 52.381 0.00 0.00 0.00 3.27
3687 3733 1.757699 ACTCCCTCCGTAAATGCTCTC 59.242 52.381 0.00 0.00 0.00 3.20
3688 3734 1.867363 ACTCCCTCCGTAAATGCTCT 58.133 50.000 0.00 0.00 0.00 4.09
3689 3735 3.132467 ACTTACTCCCTCCGTAAATGCTC 59.868 47.826 0.00 0.00 0.00 4.26
3690 3736 3.105283 ACTTACTCCCTCCGTAAATGCT 58.895 45.455 0.00 0.00 0.00 3.79
3691 3737 3.538634 ACTTACTCCCTCCGTAAATGC 57.461 47.619 0.00 0.00 0.00 3.56
3692 3738 4.081309 TCCAACTTACTCCCTCCGTAAATG 60.081 45.833 0.00 0.00 0.00 2.32
3693 3739 4.098894 TCCAACTTACTCCCTCCGTAAAT 58.901 43.478 0.00 0.00 0.00 1.40
3694 3740 3.509442 TCCAACTTACTCCCTCCGTAAA 58.491 45.455 0.00 0.00 0.00 2.01
3695 3741 3.173953 TCCAACTTACTCCCTCCGTAA 57.826 47.619 0.00 0.00 0.00 3.18
3696 3742 2.827921 GTTCCAACTTACTCCCTCCGTA 59.172 50.000 0.00 0.00 0.00 4.02
3697 3743 1.622312 GTTCCAACTTACTCCCTCCGT 59.378 52.381 0.00 0.00 0.00 4.69
3698 3744 1.900486 AGTTCCAACTTACTCCCTCCG 59.100 52.381 0.00 0.00 35.21 4.63
3709 3755 4.111916 CAACAATCGCAAAAGTTCCAACT 58.888 39.130 0.00 0.00 42.04 3.16
3710 3756 3.245048 CCAACAATCGCAAAAGTTCCAAC 59.755 43.478 0.00 0.00 0.00 3.77
3720 3766 3.998099 TCAAATGACCAACAATCGCAA 57.002 38.095 0.00 0.00 0.00 4.85
3724 3770 7.119699 TCACTCTACATCAAATGACCAACAATC 59.880 37.037 0.00 0.00 0.00 2.67
3747 3793 7.076842 ACATTTGCACTACATAGTTGATCAC 57.923 36.000 0.00 0.00 33.46 3.06
3838 3960 0.807496 GCACATGAAGCCTCCTTGAC 59.193 55.000 0.00 0.00 0.00 3.18
3927 4049 2.012673 GTTGCACATCTCATCAGGGTC 58.987 52.381 0.00 0.00 0.00 4.46
4043 4165 8.424274 TTTAACTGATATGTGTGTGCTCTATG 57.576 34.615 0.00 0.00 0.00 2.23
4065 4187 8.093307 TGCATGCTTTTTATTCTGACCATTTTA 58.907 29.630 20.33 0.00 0.00 1.52
4096 4218 3.015145 TTGGGAGGCCCTGCTACC 61.015 66.667 1.05 0.00 45.70 3.18
4115 4237 1.818674 GCAGGAGTTTTACACCATGGG 59.181 52.381 18.09 7.72 30.76 4.00
4154 4276 9.822727 TGATGGTTGATACTGGATAGAGTATTA 57.177 33.333 0.00 0.00 38.93 0.98
4155 4277 8.589338 GTGATGGTTGATACTGGATAGAGTATT 58.411 37.037 0.00 0.00 38.93 1.89
4159 4281 6.410942 TGTGATGGTTGATACTGGATAGAG 57.589 41.667 0.00 0.00 0.00 2.43
4271 4394 1.420138 GAGAACTGGAAGGGTGTTGGA 59.580 52.381 0.00 0.00 39.30 3.53
4307 4430 4.770531 TCCCGTCATCCGATATATTTGACT 59.229 41.667 12.92 0.00 39.56 3.41
4329 4452 7.337436 ACAAGTACTGTAGGAGACTAGTTGATC 59.663 40.741 0.00 0.00 45.49 2.92
4333 4456 8.930846 TTAACAAGTACTGTAGGAGACTAGTT 57.069 34.615 0.00 0.00 45.49 2.24
4370 4600 2.933906 TGAACCATTTATCTTCGTCGCC 59.066 45.455 0.00 0.00 0.00 5.54
4373 4603 4.391830 TGCACTGAACCATTTATCTTCGTC 59.608 41.667 0.00 0.00 0.00 4.20
4401 4631 7.250569 ACCTGTTGAAGAATTAATATTGCGTG 58.749 34.615 0.00 0.00 0.00 5.34
4410 4640 9.883142 AACATTTTTGACCTGTTGAAGAATTAA 57.117 25.926 0.00 0.00 32.16 1.40
4448 4678 4.161377 AGCTTCTCCTTGGAGTAGATGTTC 59.839 45.833 22.09 8.09 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.