Multiple sequence alignment - TraesCS3B01G381400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G381400 chr3B 100.000 2750 0 0 1 2750 598988426 598991175 0.000000e+00 5079.0
1 TraesCS3B01G381400 chr3A 89.865 2072 81 50 762 2750 597919304 597921329 0.000000e+00 2543.0
2 TraesCS3B01G381400 chr3D 90.182 1701 61 48 1091 2750 455716160 455717795 0.000000e+00 2119.0
3 TraesCS3B01G381400 chr3D 86.479 355 18 9 762 1087 455715518 455715871 2.010000e-96 363.0
4 TraesCS3B01G381400 chrUn 88.212 755 86 3 1 754 208777725 208776973 0.000000e+00 898.0
5 TraesCS3B01G381400 chr2B 88.196 754 88 1 1 754 412740057 412740809 0.000000e+00 898.0
6 TraesCS3B01G381400 chr2B 81.878 756 131 6 1 752 114412388 114411635 1.390000e-177 632.0
7 TraesCS3B01G381400 chr2B 75.362 138 26 6 1592 1725 445497937 445498070 2.960000e-05 60.2
8 TraesCS3B01G381400 chr1A 84.288 751 115 3 1 749 420491246 420490497 0.000000e+00 730.0
9 TraesCS3B01G381400 chr5B 82.540 756 125 7 1 753 89753574 89752823 0.000000e+00 658.0
10 TraesCS3B01G381400 chr7A 80.890 764 140 6 1 761 511515075 511515835 5.070000e-167 597.0
11 TraesCS3B01G381400 chr7D 85.011 447 67 0 1 447 1246200 1246646 3.230000e-124 455.0
12 TraesCS3B01G381400 chr7B 96.875 224 5 2 531 752 648579974 648579751 9.300000e-100 374.0
13 TraesCS3B01G381400 chr2D 100.000 29 0 0 1697 1725 375257796 375257824 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G381400 chr3B 598988426 598991175 2749 False 5079 5079 100.0000 1 2750 1 chr3B.!!$F1 2749
1 TraesCS3B01G381400 chr3A 597919304 597921329 2025 False 2543 2543 89.8650 762 2750 1 chr3A.!!$F1 1988
2 TraesCS3B01G381400 chr3D 455715518 455717795 2277 False 1241 2119 88.3305 762 2750 2 chr3D.!!$F1 1988
3 TraesCS3B01G381400 chrUn 208776973 208777725 752 True 898 898 88.2120 1 754 1 chrUn.!!$R1 753
4 TraesCS3B01G381400 chr2B 412740057 412740809 752 False 898 898 88.1960 1 754 1 chr2B.!!$F1 753
5 TraesCS3B01G381400 chr2B 114411635 114412388 753 True 632 632 81.8780 1 752 1 chr2B.!!$R1 751
6 TraesCS3B01G381400 chr1A 420490497 420491246 749 True 730 730 84.2880 1 749 1 chr1A.!!$R1 748
7 TraesCS3B01G381400 chr5B 89752823 89753574 751 True 658 658 82.5400 1 753 1 chr5B.!!$R1 752
8 TraesCS3B01G381400 chr7A 511515075 511515835 760 False 597 597 80.8900 1 761 1 chr7A.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 993 0.111446 CGGCATCTCCTCCCTCTCTA 59.889 60.0 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2218 2583 0.387239 GGCACGGTGAGCATTTTGAC 60.387 55.0 13.29 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.003718 AGGTGGCTTCTTACGTGGC 60.004 57.895 0.00 0.00 0.00 5.01
55 56 1.142185 CGTCTGATGATGAACGCGCT 61.142 55.000 5.73 0.00 0.00 5.92
106 107 2.605338 GCTTGCAAGAAACAATGCTCGA 60.605 45.455 30.39 0.00 42.97 4.04
127 128 2.036475 AGATGGCAAGCGTATCGAAGAT 59.964 45.455 0.00 0.00 45.12 2.40
202 203 0.388659 ATGGTCGCAAAAGCAAGCAA 59.611 45.000 0.00 0.00 0.00 3.91
231 232 2.325082 CGGTGAAGGAAAGGTGGCG 61.325 63.158 0.00 0.00 0.00 5.69
259 260 0.253630 AGGAAGGATGGGCCAAGGTA 60.254 55.000 11.89 0.00 40.02 3.08
271 272 1.673626 GCCAAGGTAAATGTCGACGGA 60.674 52.381 11.62 0.00 0.00 4.69
334 335 0.960364 TCAGAAACCATGAAGGCGCC 60.960 55.000 21.89 21.89 43.14 6.53
353 354 2.172483 CTACTTGGGTGGAGCGTGCT 62.172 60.000 0.00 0.00 0.00 4.40
394 395 2.930777 ATCCGGCGAGGGTAGAGCTT 62.931 60.000 9.30 0.00 41.52 3.74
412 413 2.609737 GCTTCTTGCATGCAAAAGAGCT 60.610 45.455 34.46 0.00 42.31 4.09
419 420 1.810755 CATGCAAAAGAGCTGCTCAGA 59.189 47.619 29.49 8.31 40.59 3.27
426 427 3.736732 GAGCTGCTCAGATGGCGCT 62.737 63.158 24.02 0.00 40.19 5.92
430 431 1.703438 CTGCTCAGATGGCGCTTGAC 61.703 60.000 7.64 0.00 0.00 3.18
502 503 5.175127 GGCAAACTTCAAAACAAGGAGAAA 58.825 37.500 0.00 0.00 0.00 2.52
526 527 0.185175 TCTCAGTGCTAGGGCCGATA 59.815 55.000 0.00 0.00 37.74 2.92
544 545 3.462021 GATAGTGGAGGATGTCAAGCAC 58.538 50.000 0.00 0.00 0.00 4.40
545 546 1.356124 AGTGGAGGATGTCAAGCACT 58.644 50.000 0.00 0.00 0.00 4.40
577 578 3.670627 CGAGGGAAAGCTGGAAAATTTCG 60.671 47.826 0.00 0.00 34.47 3.46
595 596 2.283388 TGGGTACGACGGGAAGCT 60.283 61.111 0.00 0.00 0.00 3.74
598 599 0.179127 GGGTACGACGGGAAGCTAAC 60.179 60.000 0.00 0.00 0.00 2.34
632 633 1.532007 CGTTAGCTAGAGAGGCGGTAG 59.468 57.143 0.00 0.00 34.52 3.18
633 634 2.574450 GTTAGCTAGAGAGGCGGTAGT 58.426 52.381 0.00 0.00 34.52 2.73
641 642 6.151480 AGCTAGAGAGGCGGTAGTAAATAATC 59.849 42.308 0.00 0.00 34.52 1.75
643 644 6.980416 AGAGAGGCGGTAGTAAATAATCTT 57.020 37.500 0.00 0.00 0.00 2.40
658 659 7.539034 AAATAATCTTTGTAAGGTGTGGCTT 57.461 32.000 0.00 0.00 0.00 4.35
662 663 5.235850 TCTTTGTAAGGTGTGGCTTCATA 57.764 39.130 0.00 0.00 0.00 2.15
692 693 5.107760 CCAGATTTCATTTTGCACTTTGTCG 60.108 40.000 0.00 0.00 0.00 4.35
862 865 0.666374 AACCTCGCAACCGAAAAAGG 59.334 50.000 0.00 0.00 43.87 3.11
886 892 5.902605 GTGAAAAACCAAAACGAAACGAAA 58.097 33.333 0.00 0.00 0.00 3.46
890 896 6.858104 AAAACCAAAACGAAACGAAACTAG 57.142 33.333 0.00 0.00 0.00 2.57
950 967 4.102649 CAAACTGAAAACCAAACGAGTCC 58.897 43.478 0.00 0.00 0.00 3.85
966 983 1.838846 TCCCCATCTCGGCATCTCC 60.839 63.158 0.00 0.00 0.00 3.71
967 984 1.840650 CCCCATCTCGGCATCTCCT 60.841 63.158 0.00 0.00 0.00 3.69
968 985 1.670590 CCCATCTCGGCATCTCCTC 59.329 63.158 0.00 0.00 0.00 3.71
969 986 1.670590 CCATCTCGGCATCTCCTCC 59.329 63.158 0.00 0.00 0.00 4.30
970 987 1.670590 CATCTCGGCATCTCCTCCC 59.329 63.158 0.00 0.00 0.00 4.30
976 993 0.111446 CGGCATCTCCTCCCTCTCTA 59.889 60.000 0.00 0.00 0.00 2.43
994 1011 0.191064 TATCTTCCCCATCTCCGGCT 59.809 55.000 0.00 0.00 0.00 5.52
1333 1659 0.611062 CTACACCTCCCTCCACGTCA 60.611 60.000 0.00 0.00 0.00 4.35
1990 2324 3.338818 GCATTATGCTGTGTTGCGTAT 57.661 42.857 10.27 0.00 40.96 3.06
1991 2325 4.466567 GCATTATGCTGTGTTGCGTATA 57.533 40.909 10.27 0.00 40.96 1.47
1992 2326 4.211389 GCATTATGCTGTGTTGCGTATAC 58.789 43.478 10.27 0.00 40.96 1.47
1993 2327 4.024893 GCATTATGCTGTGTTGCGTATACT 60.025 41.667 10.27 0.00 40.96 2.12
1994 2328 5.176774 GCATTATGCTGTGTTGCGTATACTA 59.823 40.000 10.27 0.00 40.96 1.82
2020 2379 9.921637 ACTTACTTTCTCTTAAGTCTGAATCTG 57.078 33.333 1.63 3.53 39.08 2.90
2030 2389 8.424918 TCTTAAGTCTGAATCTGAGTTTGTTCT 58.575 33.333 13.98 0.00 0.00 3.01
2051 2410 8.988060 TGTTCTATGACCCTAGTAAATGATTGA 58.012 33.333 0.00 0.00 0.00 2.57
2078 2437 7.941431 AATGTTAGTACTACTGCTCACTACT 57.059 36.000 0.91 0.00 0.00 2.57
2079 2438 6.981762 TGTTAGTACTACTGCTCACTACTC 57.018 41.667 0.91 0.00 0.00 2.59
2080 2439 6.709281 TGTTAGTACTACTGCTCACTACTCT 58.291 40.000 0.91 0.00 0.00 3.24
2081 2440 7.845037 TGTTAGTACTACTGCTCACTACTCTA 58.155 38.462 0.91 0.00 0.00 2.43
2082 2441 7.763528 TGTTAGTACTACTGCTCACTACTCTAC 59.236 40.741 0.91 0.00 0.00 2.59
2083 2442 6.549433 AGTACTACTGCTCACTACTCTACT 57.451 41.667 0.00 0.00 0.00 2.57
2132 2497 8.512138 GCTGCTTATTGGTAGAAGTTAAGAAAA 58.488 33.333 0.00 0.00 0.00 2.29
2134 2499 9.787435 TGCTTATTGGTAGAAGTTAAGAAAAGA 57.213 29.630 0.00 0.00 0.00 2.52
2146 2511 8.519799 AAGTTAAGAAAAGATTGTCCTGTGAA 57.480 30.769 0.00 0.00 0.00 3.18
2147 2512 8.697507 AGTTAAGAAAAGATTGTCCTGTGAAT 57.302 30.769 0.00 0.00 0.00 2.57
2148 2513 9.136323 AGTTAAGAAAAGATTGTCCTGTGAATT 57.864 29.630 0.00 0.00 0.00 2.17
2149 2514 9.185192 GTTAAGAAAAGATTGTCCTGTGAATTG 57.815 33.333 0.00 0.00 0.00 2.32
2150 2515 6.966534 AGAAAAGATTGTCCTGTGAATTGT 57.033 33.333 0.00 0.00 0.00 2.71
2168 2533 3.587797 TGTACTGTACTGCAAGGCTAC 57.412 47.619 17.98 0.00 39.30 3.58
2201 2566 1.530013 GCATGAGCCCTTTGCACTGT 61.530 55.000 0.00 0.00 44.83 3.55
2227 2596 5.388225 TTTTCTGCTTTTCGTCAAAATGC 57.612 34.783 2.49 2.49 44.31 3.56
2235 2604 0.865111 TCGTCAAAATGCTCACCGTG 59.135 50.000 0.00 0.00 0.00 4.94
2236 2605 0.725784 CGTCAAAATGCTCACCGTGC 60.726 55.000 0.00 0.00 0.00 5.34
2237 2606 0.387239 GTCAAAATGCTCACCGTGCC 60.387 55.000 0.00 0.00 0.00 5.01
2246 2615 0.812811 CTCACCGTGCCTGATGATGG 60.813 60.000 0.00 0.00 0.00 3.51
2387 2765 2.161486 GCTACTTGTGGAGCTCGCG 61.161 63.158 7.83 0.00 35.73 5.87
2405 2784 3.854669 CGCCCCTTGCCGAGATCT 61.855 66.667 0.00 0.00 36.24 2.75
2406 2785 2.592308 GCCCCTTGCCGAGATCTT 59.408 61.111 0.00 0.00 0.00 2.40
2407 2786 1.830145 GCCCCTTGCCGAGATCTTA 59.170 57.895 0.00 0.00 0.00 2.10
2408 2787 0.250081 GCCCCTTGCCGAGATCTTAG 60.250 60.000 0.00 0.00 0.00 2.18
2409 2788 0.394565 CCCCTTGCCGAGATCTTAGG 59.605 60.000 12.36 12.36 0.00 2.69
2481 2860 1.228583 TCTCGCTCAGGACACAGGT 60.229 57.895 0.00 0.00 0.00 4.00
2501 2880 2.895242 AGAGGCTTTTCTTGGATGCT 57.105 45.000 0.00 0.00 0.00 3.79
2608 2989 0.462047 GTGGCCGTTGGATAGGACTG 60.462 60.000 0.00 0.00 36.23 3.51
2641 3025 7.284944 TCTGATTGGCCTAGTAGTACTTAACTC 59.715 40.741 8.40 0.00 39.80 3.01
2663 3055 6.766944 ACTCCAGAGATCATTCATTCATCAAC 59.233 38.462 0.70 0.00 0.00 3.18
2697 3089 4.783560 AATTATTTGTAGTAGGCCGGGT 57.216 40.909 2.18 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.809385 CCTTCTCGAGCCACGTAAGA 59.191 55.000 7.81 5.01 43.13 2.10
26 27 0.735471 TCATCAGACGCCTTCTCGAG 59.265 55.000 5.93 5.93 28.96 4.04
40 41 2.003196 TAACAGCGCGTTCATCATCA 57.997 45.000 18.25 0.39 39.14 3.07
55 56 4.097741 GCATATGTTCCTTGCACCATAACA 59.902 41.667 4.29 5.79 36.40 2.41
106 107 1.409064 TCTTCGATACGCTTGCCATCT 59.591 47.619 0.00 0.00 0.00 2.90
247 248 1.283613 TCGACATTTACCTTGGCCCAT 59.716 47.619 0.00 0.00 0.00 4.00
252 253 2.268298 CTCCGTCGACATTTACCTTGG 58.732 52.381 17.16 5.18 0.00 3.61
259 260 0.524862 ACGTAGCTCCGTCGACATTT 59.475 50.000 17.16 0.00 35.95 2.32
294 295 1.941403 AATCATCCCAGCACCCCCAG 61.941 60.000 0.00 0.00 0.00 4.45
334 335 1.741770 GCACGCTCCACCCAAGTAG 60.742 63.158 0.00 0.00 0.00 2.57
376 377 3.657038 AAGCTCTACCCTCGCCGGA 62.657 63.158 5.05 0.00 33.16 5.14
394 395 1.336517 GCAGCTCTTTTGCATGCAAGA 60.337 47.619 30.25 25.61 41.17 3.02
412 413 1.742880 GTCAAGCGCCATCTGAGCA 60.743 57.895 2.29 0.00 0.00 4.26
419 420 0.322816 ATGTTCAGGTCAAGCGCCAT 60.323 50.000 2.29 0.00 0.00 4.40
426 427 2.787473 CCTGGCTATGTTCAGGTCAA 57.213 50.000 0.00 0.00 44.03 3.18
502 503 1.703411 GCCCTAGCACTGAGAGATCT 58.297 55.000 0.00 0.00 39.53 2.75
513 514 0.827925 CTCCACTATCGGCCCTAGCA 60.828 60.000 0.00 0.00 42.56 3.49
517 518 0.833834 CATCCTCCACTATCGGCCCT 60.834 60.000 0.00 0.00 0.00 5.19
526 527 1.356124 AGTGCTTGACATCCTCCACT 58.644 50.000 0.00 0.00 0.00 4.00
544 545 3.589654 TTCCCTCGTCGCCAGCAAG 62.590 63.158 0.00 0.00 0.00 4.01
545 546 3.171828 TTTCCCTCGTCGCCAGCAA 62.172 57.895 0.00 0.00 0.00 3.91
577 578 1.315257 TAGCTTCCCGTCGTACCCAC 61.315 60.000 0.00 0.00 0.00 4.61
586 587 0.608640 CCACTCTGTTAGCTTCCCGT 59.391 55.000 0.00 0.00 0.00 5.28
595 596 3.678056 AACGAATGAGCCACTCTGTTA 57.322 42.857 0.00 0.00 0.00 2.41
598 599 1.929836 GCTAACGAATGAGCCACTCTG 59.070 52.381 0.00 0.00 32.25 3.35
632 633 8.051901 AGCCACACCTTACAAAGATTATTTAC 57.948 34.615 0.00 0.00 0.00 2.01
633 634 8.644374 AAGCCACACCTTACAAAGATTATTTA 57.356 30.769 0.00 0.00 0.00 1.40
641 642 5.677091 GCATATGAAGCCACACCTTACAAAG 60.677 44.000 6.97 0.00 0.00 2.77
643 644 3.694072 GCATATGAAGCCACACCTTACAA 59.306 43.478 6.97 0.00 0.00 2.41
658 659 4.474303 AATGAAATCTGGGGGCATATGA 57.526 40.909 6.97 0.00 0.00 2.15
662 663 2.092807 GCAAAATGAAATCTGGGGGCAT 60.093 45.455 0.00 0.00 0.00 4.40
692 693 0.102120 CACTCAGGGATCTCGTCTGC 59.898 60.000 0.00 0.00 0.00 4.26
754 756 3.489059 CCAACACTCGTGCATGTTTTCTT 60.489 43.478 5.68 0.00 36.92 2.52
755 757 2.033299 CCAACACTCGTGCATGTTTTCT 59.967 45.455 5.68 0.00 36.92 2.52
756 758 2.384382 CCAACACTCGTGCATGTTTTC 58.616 47.619 5.68 0.00 36.92 2.29
760 762 2.260869 GGCCAACACTCGTGCATGT 61.261 57.895 5.68 0.00 0.00 3.21
794 796 4.535526 TTTCATTTTAGCCCTTGGAAGC 57.464 40.909 0.00 0.00 0.00 3.86
825 828 3.116746 AGGTTTGGAATTTGAAGGAGGGT 60.117 43.478 0.00 0.00 0.00 4.34
869 872 5.447683 GGACTAGTTTCGTTTCGTTTTGGTT 60.448 40.000 0.00 0.00 0.00 3.67
870 873 4.034394 GGACTAGTTTCGTTTCGTTTTGGT 59.966 41.667 0.00 0.00 0.00 3.67
871 874 4.034279 TGGACTAGTTTCGTTTCGTTTTGG 59.966 41.667 0.00 0.00 0.00 3.28
872 875 5.146482 TGGACTAGTTTCGTTTCGTTTTG 57.854 39.130 0.00 0.00 0.00 2.44
886 892 0.688087 GTGGCCCTAGCTGGACTAGT 60.688 60.000 0.00 0.00 46.10 2.57
890 896 2.269241 GTGTGGCCCTAGCTGGAC 59.731 66.667 0.00 0.00 39.73 4.02
950 967 1.670590 GAGGAGATGCCGAGATGGG 59.329 63.158 0.00 0.00 43.43 4.00
966 983 3.077391 AGATGGGGAAGATAGAGAGGGAG 59.923 52.174 0.00 0.00 0.00 4.30
967 984 3.075181 AGATGGGGAAGATAGAGAGGGA 58.925 50.000 0.00 0.00 0.00 4.20
968 985 3.440127 GAGATGGGGAAGATAGAGAGGG 58.560 54.545 0.00 0.00 0.00 4.30
969 986 3.440127 GGAGATGGGGAAGATAGAGAGG 58.560 54.545 0.00 0.00 0.00 3.69
970 987 3.088532 CGGAGATGGGGAAGATAGAGAG 58.911 54.545 0.00 0.00 0.00 3.20
976 993 0.695803 AAGCCGGAGATGGGGAAGAT 60.696 55.000 5.05 0.00 0.00 2.40
994 1011 4.380945 GGGCAGCCACATGGGGAA 62.381 66.667 21.28 0.00 37.04 3.97
1212 1538 4.052229 CGGACGCGGTGGAAGACT 62.052 66.667 12.47 0.00 0.00 3.24
1479 1805 4.452733 CCGACGAAGACCTGGGGC 62.453 72.222 0.00 0.00 0.00 5.80
1994 2328 9.921637 CAGATTCAGACTTAAGAGAAAGTAAGT 57.078 33.333 10.09 0.00 42.00 2.24
2020 2379 9.099454 CATTTACTAGGGTCATAGAACAAACTC 57.901 37.037 0.00 0.00 0.00 3.01
2081 2440 9.857957 GCAACATTAAACTTCTACTACTAGAGT 57.142 33.333 0.00 0.00 42.69 3.24
2083 2442 9.856488 CAGCAACATTAAACTTCTACTACTAGA 57.144 33.333 0.00 0.00 0.00 2.43
2099 2458 6.884295 ACTTCTACCAATAAGCAGCAACATTA 59.116 34.615 0.00 0.00 0.00 1.90
2106 2465 7.611213 TTCTTAACTTCTACCAATAAGCAGC 57.389 36.000 0.00 0.00 0.00 5.25
2132 2497 5.869579 ACAGTACAATTCACAGGACAATCT 58.130 37.500 0.00 0.00 0.00 2.40
2133 2498 6.874134 AGTACAGTACAATTCACAGGACAATC 59.126 38.462 13.37 0.00 0.00 2.67
2134 2499 6.650807 CAGTACAGTACAATTCACAGGACAAT 59.349 38.462 13.37 0.00 0.00 2.71
2137 2502 4.389077 GCAGTACAGTACAATTCACAGGAC 59.611 45.833 13.37 0.00 0.00 3.85
2146 2511 3.703001 AGCCTTGCAGTACAGTACAAT 57.297 42.857 13.37 0.00 0.00 2.71
2147 2512 3.576982 AGTAGCCTTGCAGTACAGTACAA 59.423 43.478 13.37 0.00 0.00 2.41
2148 2513 3.056821 CAGTAGCCTTGCAGTACAGTACA 60.057 47.826 13.37 0.00 0.00 2.90
2149 2514 3.512680 CAGTAGCCTTGCAGTACAGTAC 58.487 50.000 2.05 2.05 0.00 2.73
2150 2515 2.496070 CCAGTAGCCTTGCAGTACAGTA 59.504 50.000 0.00 0.00 0.00 2.74
2211 2576 2.726241 GGTGAGCATTTTGACGAAAAGC 59.274 45.455 7.20 7.20 34.53 3.51
2218 2583 0.387239 GGCACGGTGAGCATTTTGAC 60.387 55.000 13.29 0.00 0.00 3.18
2227 2596 0.812811 CCATCATCAGGCACGGTGAG 60.813 60.000 13.29 0.69 0.00 3.51
2235 2604 2.621998 CCATTCAACTCCATCATCAGGC 59.378 50.000 0.00 0.00 0.00 4.85
2236 2605 3.894759 ACCATTCAACTCCATCATCAGG 58.105 45.455 0.00 0.00 0.00 3.86
2237 2606 4.097437 CCAACCATTCAACTCCATCATCAG 59.903 45.833 0.00 0.00 0.00 2.90
2246 2615 4.082787 CCACATACACCAACCATTCAACTC 60.083 45.833 0.00 0.00 0.00 3.01
2403 2782 3.031736 AGCCGTAAGATCTTGCCTAAGA 58.968 45.455 18.47 0.00 46.32 2.10
2404 2783 3.126831 CAGCCGTAAGATCTTGCCTAAG 58.873 50.000 18.47 3.90 43.02 2.18
2405 2784 2.741878 GCAGCCGTAAGATCTTGCCTAA 60.742 50.000 18.47 0.00 43.02 2.69
2406 2785 1.202533 GCAGCCGTAAGATCTTGCCTA 60.203 52.381 18.47 0.00 43.02 3.93
2407 2786 0.462759 GCAGCCGTAAGATCTTGCCT 60.463 55.000 18.47 7.31 43.02 4.75
2408 2787 0.462759 AGCAGCCGTAAGATCTTGCC 60.463 55.000 18.47 7.48 43.02 4.52
2409 2788 1.861575 GTAGCAGCCGTAAGATCTTGC 59.138 52.381 18.47 15.66 43.02 4.01
2410 2789 2.120232 CGTAGCAGCCGTAAGATCTTG 58.880 52.381 18.47 2.50 43.02 3.02
2411 2790 2.493713 CGTAGCAGCCGTAAGATCTT 57.506 50.000 13.56 13.56 43.02 2.40
2481 2860 3.878778 GAGCATCCAAGAAAAGCCTCTA 58.121 45.455 0.00 0.00 0.00 2.43
2501 2880 2.656069 CCCGGCGAGAGAAAAGGGA 61.656 63.158 9.30 0.00 41.26 4.20
2608 2989 7.475137 ACTACTAGGCCAATCAGATCTTATC 57.525 40.000 5.01 0.00 0.00 1.75
2641 3025 5.049612 CGGTTGATGAATGAATGATCTCTGG 60.050 44.000 0.00 0.00 0.00 3.86
2663 3055 5.880054 ACAAATAATTTCTCACTCACCGG 57.120 39.130 0.00 0.00 0.00 5.28
2697 3089 2.297033 GCTCTTCATGTGGCAAGGAAAA 59.703 45.455 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.