Multiple sequence alignment - TraesCS3B01G380900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G380900 chr3B 100.000 2282 0 0 1 2282 598468429 598466148 0.000000e+00 4215
1 TraesCS3B01G380900 chr3A 92.744 1709 65 25 1 1677 597547561 597545880 0.000000e+00 2414
2 TraesCS3B01G380900 chr3A 87.868 544 31 15 1755 2282 597545608 597545084 6.970000e-170 606
3 TraesCS3B01G380900 chr3D 90.661 1467 62 31 863 2279 455105823 455104382 0.000000e+00 1881
4 TraesCS3B01G380900 chr3D 93.020 831 45 7 1 828 455106774 455105954 0.000000e+00 1201
5 TraesCS3B01G380900 chr1D 88.162 321 36 2 1 320 393750390 393750071 4.600000e-102 381
6 TraesCS3B01G380900 chr1A 87.500 320 38 2 1 319 492046149 492046467 3.580000e-98 368
7 TraesCS3B01G380900 chr1B 86.916 321 40 2 1 320 529288296 529288615 2.160000e-95 359


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G380900 chr3B 598466148 598468429 2281 True 4215 4215 100.0000 1 2282 1 chr3B.!!$R1 2281
1 TraesCS3B01G380900 chr3A 597545084 597547561 2477 True 1510 2414 90.3060 1 2282 2 chr3A.!!$R1 2281
2 TraesCS3B01G380900 chr3D 455104382 455106774 2392 True 1541 1881 91.8405 1 2279 2 chr3D.!!$R1 2278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 786 0.89832 GCTACCTCTCAGCTTGGTCA 59.102 55.0 1.34 0.0 36.07 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 2117 0.752054 AGTGTGTTGGCCATGGTTTG 59.248 50.0 14.67 0.0 0.0 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
389 390 2.439883 GGGACGTCGAGGGTAGCT 60.440 66.667 9.92 0.00 0.00 3.32
390 391 2.050934 GGGACGTCGAGGGTAGCTT 61.051 63.158 9.92 0.00 0.00 3.74
556 557 6.731467 AGATTTGAGCTTTCCCTTTGGTATA 58.269 36.000 0.00 0.00 0.00 1.47
564 565 6.208797 AGCTTTCCCTTTGGTATACTTTGTTC 59.791 38.462 2.25 0.00 0.00 3.18
714 715 8.768397 TCATTATCCCATACATATCCTGGTAAC 58.232 37.037 0.00 0.00 0.00 2.50
744 745 9.911788 AGAAATTGAGATTTGTGGTCATATACT 57.088 29.630 0.00 0.00 35.65 2.12
746 747 9.685276 AAATTGAGATTTGTGGTCATATACTCA 57.315 29.630 0.00 0.00 34.26 3.41
747 748 9.857656 AATTGAGATTTGTGGTCATATACTCAT 57.142 29.630 0.00 0.00 33.12 2.90
782 783 3.386078 TCTTATGCTACCTCTCAGCTTGG 59.614 47.826 0.00 0.00 39.83 3.61
785 786 0.898320 GCTACCTCTCAGCTTGGTCA 59.102 55.000 1.34 0.00 36.07 4.02
786 787 1.484240 GCTACCTCTCAGCTTGGTCAT 59.516 52.381 1.34 0.00 36.07 3.06
794 796 2.499289 CTCAGCTTGGTCATGTACTCCT 59.501 50.000 0.00 0.00 0.00 3.69
828 832 9.774742 CTTATTAGAGGTGTTTAATTTGTGCTC 57.225 33.333 0.00 0.00 0.00 4.26
830 834 7.759489 TTAGAGGTGTTTAATTTGTGCTCAT 57.241 32.000 0.00 0.00 0.00 2.90
831 835 6.655078 AGAGGTGTTTAATTTGTGCTCATT 57.345 33.333 0.00 0.00 0.00 2.57
832 836 7.759489 AGAGGTGTTTAATTTGTGCTCATTA 57.241 32.000 0.00 0.00 0.00 1.90
833 837 7.820648 AGAGGTGTTTAATTTGTGCTCATTAG 58.179 34.615 0.00 0.00 0.00 1.73
860 892 6.206048 TCATTAGCTCATACATCCATTGCAAG 59.794 38.462 4.94 0.00 0.00 4.01
883 983 7.024340 AGCTAGTAATCAATTCTTGCACATG 57.976 36.000 0.00 0.00 33.79 3.21
948 1051 3.087031 CAGAAGCACTGGATGAATGGTT 58.913 45.455 3.48 0.00 42.39 3.67
949 1052 3.508793 CAGAAGCACTGGATGAATGGTTT 59.491 43.478 3.48 0.00 42.39 3.27
950 1053 3.760684 AGAAGCACTGGATGAATGGTTTC 59.239 43.478 0.00 0.00 34.37 2.78
951 1054 3.446442 AGCACTGGATGAATGGTTTCT 57.554 42.857 0.00 0.00 32.78 2.52
952 1055 3.771216 AGCACTGGATGAATGGTTTCTT 58.229 40.909 0.00 0.00 32.78 2.52
953 1056 3.508793 AGCACTGGATGAATGGTTTCTTG 59.491 43.478 0.00 0.00 32.78 3.02
954 1057 3.841643 CACTGGATGAATGGTTTCTTGC 58.158 45.455 0.00 0.00 32.78 4.01
1005 1110 5.141182 AGTAGATCGCTAGGAAGAATGGAA 58.859 41.667 0.00 0.00 0.00 3.53
1007 1112 4.954875 AGATCGCTAGGAAGAATGGAAAG 58.045 43.478 0.00 0.00 0.00 2.62
1008 1113 4.651503 AGATCGCTAGGAAGAATGGAAAGA 59.348 41.667 0.00 0.00 0.00 2.52
1255 1370 0.595588 AGAGCGTGTGTGTGAGAGAG 59.404 55.000 0.00 0.00 0.00 3.20
1268 1383 5.069648 TGTGTGAGAGAGAGATGAACAGTTT 59.930 40.000 0.00 0.00 0.00 2.66
1322 1437 2.325583 ACAGTTCTTGCGGTTTGAGA 57.674 45.000 0.00 0.00 0.00 3.27
1325 1460 2.872245 CAGTTCTTGCGGTTTGAGAGAA 59.128 45.455 0.00 0.00 0.00 2.87
1330 1465 2.169832 TGCGGTTTGAGAGAAAGAGG 57.830 50.000 0.00 0.00 0.00 3.69
1331 1466 1.270839 TGCGGTTTGAGAGAAAGAGGG 60.271 52.381 0.00 0.00 0.00 4.30
1332 1467 1.002087 GCGGTTTGAGAGAAAGAGGGA 59.998 52.381 0.00 0.00 0.00 4.20
1333 1468 2.933056 GCGGTTTGAGAGAAAGAGGGAG 60.933 54.545 0.00 0.00 0.00 4.30
1334 1469 2.354203 CGGTTTGAGAGAAAGAGGGAGG 60.354 54.545 0.00 0.00 0.00 4.30
1552 1687 2.336478 ACTGCCGTCGTCCTCTCTG 61.336 63.158 0.00 0.00 0.00 3.35
1576 1711 0.040204 CCCTCCTTGATTTGGGCTGT 59.960 55.000 0.00 0.00 32.49 4.40
1577 1712 1.180029 CCTCCTTGATTTGGGCTGTG 58.820 55.000 0.00 0.00 0.00 3.66
1578 1713 1.180029 CTCCTTGATTTGGGCTGTGG 58.820 55.000 0.00 0.00 0.00 4.17
1597 1732 1.261480 GCCTTCCTCTCTCACACAGA 58.739 55.000 0.00 0.00 0.00 3.41
1598 1733 1.620819 GCCTTCCTCTCTCACACAGAA 59.379 52.381 0.00 0.00 0.00 3.02
1665 1800 2.575532 CCATGCCAGTCGGTTTGATAT 58.424 47.619 0.00 0.00 33.28 1.63
1699 1834 4.753233 CGATCAGATCAACCCTCCATATC 58.247 47.826 11.12 0.00 0.00 1.63
1701 1836 4.219392 TCAGATCAACCCTCCATATCCT 57.781 45.455 0.00 0.00 0.00 3.24
1702 1837 4.163427 TCAGATCAACCCTCCATATCCTC 58.837 47.826 0.00 0.00 0.00 3.71
1703 1838 4.140591 TCAGATCAACCCTCCATATCCTCT 60.141 45.833 0.00 0.00 0.00 3.69
1704 1839 4.222588 CAGATCAACCCTCCATATCCTCTC 59.777 50.000 0.00 0.00 0.00 3.20
1705 1840 4.109435 AGATCAACCCTCCATATCCTCTCT 59.891 45.833 0.00 0.00 0.00 3.10
1706 1841 3.850752 TCAACCCTCCATATCCTCTCTC 58.149 50.000 0.00 0.00 0.00 3.20
1707 1842 3.469006 TCAACCCTCCATATCCTCTCTCT 59.531 47.826 0.00 0.00 0.00 3.10
1708 1843 3.825908 ACCCTCCATATCCTCTCTCTC 57.174 52.381 0.00 0.00 0.00 3.20
1709 1844 3.345087 ACCCTCCATATCCTCTCTCTCT 58.655 50.000 0.00 0.00 0.00 3.10
1710 1845 3.333680 ACCCTCCATATCCTCTCTCTCTC 59.666 52.174 0.00 0.00 0.00 3.20
1711 1846 3.593328 CCCTCCATATCCTCTCTCTCTCT 59.407 52.174 0.00 0.00 0.00 3.10
1712 1847 4.788075 CCCTCCATATCCTCTCTCTCTCTA 59.212 50.000 0.00 0.00 0.00 2.43
1713 1848 5.433051 CCCTCCATATCCTCTCTCTCTCTAT 59.567 48.000 0.00 0.00 0.00 1.98
1714 1849 6.409695 CCCTCCATATCCTCTCTCTCTCTATC 60.410 50.000 0.00 0.00 0.00 2.08
1715 1850 6.409695 CCTCCATATCCTCTCTCTCTCTATCC 60.410 50.000 0.00 0.00 0.00 2.59
1716 1851 5.431731 TCCATATCCTCTCTCTCTCTATCCC 59.568 48.000 0.00 0.00 0.00 3.85
1717 1852 5.433051 CCATATCCTCTCTCTCTCTATCCCT 59.567 48.000 0.00 0.00 0.00 4.20
1718 1853 6.409695 CCATATCCTCTCTCTCTCTATCCCTC 60.410 50.000 0.00 0.00 0.00 4.30
1719 1854 4.228237 TCCTCTCTCTCTCTATCCCTCT 57.772 50.000 0.00 0.00 0.00 3.69
1720 1855 4.168101 TCCTCTCTCTCTCTATCCCTCTC 58.832 52.174 0.00 0.00 0.00 3.20
1721 1856 3.264450 CCTCTCTCTCTCTATCCCTCTCC 59.736 56.522 0.00 0.00 0.00 3.71
1733 1868 1.010793 TCCCTCTCCCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
1743 1878 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
1745 1880 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1747 1882 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1748 1883 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
1753 2082 3.648067 TCTCTCTCTCTCTCTCTGATCCC 59.352 52.174 0.00 0.00 0.00 3.85
1758 2087 2.855599 TCTCTCTCTCTGATCCCCTTCA 59.144 50.000 0.00 0.00 0.00 3.02
1768 2097 5.500234 TCTGATCCCCTTCATTTTGTACTG 58.500 41.667 0.00 0.00 0.00 2.74
1779 2108 8.863049 CCTTCATTTTGTACTGTAATTGCATTC 58.137 33.333 0.00 0.00 0.00 2.67
1783 2112 9.335891 CATTTTGTACTGTAATTGCATTCGTTA 57.664 29.630 0.00 0.00 0.00 3.18
1784 2113 8.942669 TTTTGTACTGTAATTGCATTCGTTAG 57.057 30.769 0.00 0.00 0.00 2.34
1788 2117 4.142687 ACTGTAATTGCATTCGTTAGTGCC 60.143 41.667 0.00 0.00 40.56 5.01
1807 2136 0.752054 CAAACCATGGCCAACACACT 59.248 50.000 10.96 0.00 0.00 3.55
1837 2166 6.627065 GCAGGCAAGTAATTAAGCACCATTAA 60.627 38.462 7.75 0.00 0.00 1.40
1843 2172 8.612619 CAAGTAATTAAGCACCATTAACGATCT 58.387 33.333 0.00 0.00 0.00 2.75
1845 2174 9.998106 AGTAATTAAGCACCATTAACGATCTAT 57.002 29.630 0.00 0.00 0.00 1.98
1878 2222 8.700973 GGATTCTTTCCTGGTAGATCTATATCC 58.299 40.741 5.57 3.33 41.78 2.59
1880 2224 9.621239 ATTCTTTCCTGGTAGATCTATATCCAA 57.379 33.333 5.57 0.00 31.98 3.53
1881 2225 8.657387 TCTTTCCTGGTAGATCTATATCCAAG 57.343 38.462 5.57 3.19 31.98 3.61
1935 2279 3.967987 ACAGTATCTACCCTTAGGCCTTG 59.032 47.826 12.58 4.20 36.11 3.61
1952 2296 3.056891 GCCTTGGCAATGTAACTAGCAAA 60.057 43.478 6.79 0.00 0.00 3.68
2220 2568 1.972752 TGCGGCTGTTCATGCATGT 60.973 52.632 25.43 0.00 31.31 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 206 2.434359 GCGAAGGGGTTGGACTCG 60.434 66.667 0.00 0.00 0.00 4.18
389 390 1.741401 CAAGAGCACCATCGCCGAA 60.741 57.895 0.00 0.00 0.00 4.30
390 391 2.125552 CAAGAGCACCATCGCCGA 60.126 61.111 0.00 0.00 0.00 5.54
464 465 7.178628 AGGTTTGCAAGTCTACTATACTCAAGA 59.821 37.037 0.00 0.00 0.00 3.02
526 527 4.268359 AGGGAAAGCTCAAATCTTGCTAG 58.732 43.478 0.00 0.00 35.85 3.42
626 627 1.740025 ACTACTACGACGCCCTGTAAC 59.260 52.381 0.00 0.00 0.00 2.50
748 749 9.762381 AGAGGTAGCATAAGAAGTAGCTATAAT 57.238 33.333 0.00 0.00 41.14 1.28
749 750 9.233649 GAGAGGTAGCATAAGAAGTAGCTATAA 57.766 37.037 0.00 0.00 41.14 0.98
750 751 8.383947 TGAGAGGTAGCATAAGAAGTAGCTATA 58.616 37.037 0.00 0.00 41.14 1.31
751 752 7.235079 TGAGAGGTAGCATAAGAAGTAGCTAT 58.765 38.462 0.00 0.00 41.14 2.97
755 756 5.534654 AGCTGAGAGGTAGCATAAGAAGTAG 59.465 44.000 0.00 0.00 43.53 2.57
834 838 5.704053 TGCAATGGATGTATGAGCTAATGAG 59.296 40.000 0.00 0.00 0.00 2.90
835 839 5.623169 TGCAATGGATGTATGAGCTAATGA 58.377 37.500 0.00 0.00 0.00 2.57
839 843 3.817084 GCTTGCAATGGATGTATGAGCTA 59.183 43.478 0.00 0.00 0.00 3.32
840 844 2.621998 GCTTGCAATGGATGTATGAGCT 59.378 45.455 0.00 0.00 0.00 4.09
883 983 8.848528 GCTTCGAACGGTACTAGAAATATTATC 58.151 37.037 0.00 0.00 0.00 1.75
949 1052 9.331282 GCTAGGAGAAAATAGAAATAAGCAAGA 57.669 33.333 0.00 0.00 0.00 3.02
950 1053 9.336171 AGCTAGGAGAAAATAGAAATAAGCAAG 57.664 33.333 0.00 0.00 0.00 4.01
952 1055 9.765795 GTAGCTAGGAGAAAATAGAAATAAGCA 57.234 33.333 0.00 0.00 0.00 3.91
953 1056 9.990360 AGTAGCTAGGAGAAAATAGAAATAAGC 57.010 33.333 0.00 0.00 0.00 3.09
1005 1110 4.140536 CCTCTCTTTTCCTTTGCACTCTT 58.859 43.478 0.00 0.00 0.00 2.85
1007 1112 2.816672 CCCTCTCTTTTCCTTTGCACTC 59.183 50.000 0.00 0.00 0.00 3.51
1008 1113 2.489802 CCCCTCTCTTTTCCTTTGCACT 60.490 50.000 0.00 0.00 0.00 4.40
1255 1370 3.626028 ACCGCAAAAACTGTTCATCTC 57.374 42.857 0.00 0.00 0.00 2.75
1268 1383 1.466950 CTCGCCATTAGAAACCGCAAA 59.533 47.619 0.00 0.00 0.00 3.68
1322 1437 1.916874 GCCCTAAACCTCCCTCTTTCT 59.083 52.381 0.00 0.00 0.00 2.52
1325 1460 2.629909 CCTAGCCCTAAACCTCCCTCTT 60.630 54.545 0.00 0.00 0.00 2.85
1330 1465 1.141185 ATGCCTAGCCCTAAACCTCC 58.859 55.000 0.00 0.00 0.00 4.30
1331 1466 1.815795 GCATGCCTAGCCCTAAACCTC 60.816 57.143 6.36 0.00 0.00 3.85
1332 1467 0.183731 GCATGCCTAGCCCTAAACCT 59.816 55.000 6.36 0.00 0.00 3.50
1333 1468 0.106719 TGCATGCCTAGCCCTAAACC 60.107 55.000 16.68 0.00 0.00 3.27
1334 1469 1.025041 GTGCATGCCTAGCCCTAAAC 58.975 55.000 16.68 0.00 0.00 2.01
1357 1492 1.900545 CTCTCCGGACAAACCCCTCC 61.901 65.000 0.00 0.00 34.64 4.30
1552 1687 2.959030 GCCCAAATCAAGGAGGGATAAC 59.041 50.000 0.00 0.00 44.30 1.89
1576 1711 0.471780 TGTGTGAGAGAGGAAGGCCA 60.472 55.000 5.01 0.00 36.29 5.36
1577 1712 0.248843 CTGTGTGAGAGAGGAAGGCC 59.751 60.000 0.00 0.00 0.00 5.19
1578 1713 1.261480 TCTGTGTGAGAGAGGAAGGC 58.739 55.000 0.00 0.00 0.00 4.35
1584 1719 1.069924 CGCGCTTCTGTGTGAGAGAG 61.070 60.000 5.56 0.00 36.39 3.20
1623 1758 1.753078 AGTGGCCATGCATGCAGAG 60.753 57.895 26.69 19.71 0.00 3.35
1658 1793 1.605232 CGCAGCAGCATGGATATCAAA 59.395 47.619 4.83 0.00 42.27 2.69
1665 1800 1.523032 CTGATCGCAGCAGCATGGA 60.523 57.895 0.82 0.00 42.27 3.41
1699 1834 3.264450 GGAGAGGGATAGAGAGAGAGAGG 59.736 56.522 0.00 0.00 0.00 3.69
1701 1836 3.115962 AGGGAGAGGGATAGAGAGAGAGA 60.116 52.174 0.00 0.00 0.00 3.10
1702 1837 3.260205 AGGGAGAGGGATAGAGAGAGAG 58.740 54.545 0.00 0.00 0.00 3.20
1703 1838 3.115962 AGAGGGAGAGGGATAGAGAGAGA 60.116 52.174 0.00 0.00 0.00 3.10
1704 1839 3.260205 AGAGGGAGAGGGATAGAGAGAG 58.740 54.545 0.00 0.00 0.00 3.20
1705 1840 3.115962 AGAGAGGGAGAGGGATAGAGAGA 60.116 52.174 0.00 0.00 0.00 3.10
1706 1841 3.260205 AGAGAGGGAGAGGGATAGAGAG 58.740 54.545 0.00 0.00 0.00 3.20
1707 1842 3.115962 AGAGAGAGGGAGAGGGATAGAGA 60.116 52.174 0.00 0.00 0.00 3.10
1708 1843 3.260205 AGAGAGAGGGAGAGGGATAGAG 58.740 54.545 0.00 0.00 0.00 2.43
1709 1844 3.115962 AGAGAGAGAGGGAGAGGGATAGA 60.116 52.174 0.00 0.00 0.00 1.98
1710 1845 3.260205 AGAGAGAGAGGGAGAGGGATAG 58.740 54.545 0.00 0.00 0.00 2.08
1711 1846 3.115962 AGAGAGAGAGAGGGAGAGGGATA 60.116 52.174 0.00 0.00 0.00 2.59
1712 1847 2.065799 GAGAGAGAGAGGGAGAGGGAT 58.934 57.143 0.00 0.00 0.00 3.85
1713 1848 1.010793 AGAGAGAGAGAGGGAGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
1714 1849 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
1715 1850 2.370189 GAGAGAGAGAGAGAGGGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
1716 1851 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1717 1852 3.051803 AGAGAGAGAGAGAGAGAGGGAGA 60.052 52.174 0.00 0.00 0.00 3.71
1718 1853 3.312890 AGAGAGAGAGAGAGAGAGGGAG 58.687 54.545 0.00 0.00 0.00 4.30
1719 1854 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
1720 1855 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
1721 1856 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
1733 1868 2.711009 GGGGATCAGAGAGAGAGAGAGA 59.289 54.545 0.00 0.00 0.00 3.10
1743 1878 4.934797 ACAAAATGAAGGGGATCAGAGA 57.065 40.909 0.00 0.00 31.76 3.10
1745 1880 5.014123 ACAGTACAAAATGAAGGGGATCAGA 59.986 40.000 0.00 0.00 31.76 3.27
1747 1882 5.255397 ACAGTACAAAATGAAGGGGATCA 57.745 39.130 0.00 0.00 0.00 2.92
1748 1883 7.881775 ATTACAGTACAAAATGAAGGGGATC 57.118 36.000 0.00 0.00 0.00 3.36
1753 2082 8.761575 AATGCAATTACAGTACAAAATGAAGG 57.238 30.769 0.00 0.00 32.46 3.46
1758 2087 9.554724 CTAACGAATGCAATTACAGTACAAAAT 57.445 29.630 0.00 0.00 36.07 1.82
1768 2097 4.349663 TGGCACTAACGAATGCAATTAC 57.650 40.909 0.00 0.00 43.93 1.89
1788 2117 0.752054 AGTGTGTTGGCCATGGTTTG 59.248 50.000 14.67 0.00 0.00 2.93
1807 2136 3.941483 GCTTAATTACTTGCCTGCTCTCA 59.059 43.478 0.00 0.00 0.00 3.27
1875 2219 3.710209 AAGCAGCTACAGTTCTTGGAT 57.290 42.857 0.00 0.00 0.00 3.41
1877 2221 3.188048 CAGAAAGCAGCTACAGTTCTTGG 59.812 47.826 4.57 0.00 0.00 3.61
1878 2222 4.060900 TCAGAAAGCAGCTACAGTTCTTG 58.939 43.478 4.57 2.41 0.00 3.02
1880 2224 3.306641 CCTCAGAAAGCAGCTACAGTTCT 60.307 47.826 0.00 0.00 0.00 3.01
1881 2225 2.999355 CCTCAGAAAGCAGCTACAGTTC 59.001 50.000 0.00 0.00 0.00 3.01
1935 2279 5.890334 TGCTAATTTGCTAGTTACATTGCC 58.110 37.500 12.99 0.00 0.00 4.52
2047 2395 1.670406 GCTCACAGTCACAGGCCAG 60.670 63.158 5.01 0.00 0.00 4.85
2164 2512 0.818040 GGAGACGAGAGAGAGGGAGC 60.818 65.000 0.00 0.00 0.00 4.70
2202 2550 1.925415 GACATGCATGAACAGCCGCA 61.925 55.000 32.75 0.00 39.01 5.69
2238 2589 2.337879 GACTGTGGGTCTGTGGCCAA 62.338 60.000 7.24 0.00 41.46 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.