Multiple sequence alignment - TraesCS3B01G380800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G380800 chr3B 100.000 9145 0 0 1 9145 598187708 598196852 0.000000e+00 16888.0
1 TraesCS3B01G380800 chr3B 90.162 2094 203 2 5112 7205 478082606 478084696 0.000000e+00 2723.0
2 TraesCS3B01G380800 chr3B 92.481 266 17 2 395 657 427264692 427264427 2.410000e-100 377.0
3 TraesCS3B01G380800 chr3B 82.955 88 5 3 8499 8584 744654333 744654254 4.580000e-08 71.3
4 TraesCS3B01G380800 chr3B 82.895 76 13 0 1254 1329 598188889 598188964 1.650000e-07 69.4
5 TraesCS3B01G380800 chr3B 82.895 76 13 0 1182 1257 598188961 598189036 1.650000e-07 69.4
6 TraesCS3B01G380800 chr3B 94.595 37 2 0 8499 8535 420304160 420304196 3.570000e-04 58.4
7 TraesCS3B01G380800 chr1B 97.232 2095 56 1 5112 7206 188912218 188910126 0.000000e+00 3546.0
8 TraesCS3B01G380800 chr1B 90.553 2096 194 4 5112 7206 390344514 390342422 0.000000e+00 2771.0
9 TraesCS3B01G380800 chr1B 89.260 2095 220 5 5112 7205 301272069 301269979 0.000000e+00 2617.0
10 TraesCS3B01G380800 chr1B 81.013 237 37 5 1629 1861 529396255 529396023 2.030000e-41 182.0
11 TraesCS3B01G380800 chr1B 88.889 144 15 1 4351 4494 529393987 529393845 9.440000e-40 176.0
12 TraesCS3B01G380800 chr1B 94.444 36 1 1 3313 3347 415223257 415223292 5.000000e-03 54.7
13 TraesCS3B01G380800 chr3D 90.541 2590 152 47 668 3201 455051042 455053594 0.000000e+00 3339.0
14 TraesCS3B01G380800 chr3D 95.518 1718 46 6 3397 5112 455053650 455055338 0.000000e+00 2717.0
15 TraesCS3B01G380800 chr3D 93.726 1291 61 11 7220 8503 455055338 455056615 0.000000e+00 1917.0
16 TraesCS3B01G380800 chr3D 93.718 589 19 4 8575 9145 455056617 455057205 0.000000e+00 867.0
17 TraesCS3B01G380800 chr3D 95.019 261 11 2 398 657 306028960 306029219 8.550000e-110 409.0
18 TraesCS3B01G380800 chr3D 88.854 314 31 3 83 396 455050714 455051023 5.180000e-102 383.0
19 TraesCS3B01G380800 chr3D 96.875 32 0 1 3317 3347 371367038 371367007 1.700000e-02 52.8
20 TraesCS3B01G380800 chr7A 90.662 2099 185 10 5112 7206 482730227 482728136 0.000000e+00 2780.0
21 TraesCS3B01G380800 chr7A 90.123 2106 204 1 5101 7206 299592298 299590197 0.000000e+00 2734.0
22 TraesCS3B01G380800 chr7A 100.000 28 0 0 3374 3401 628705055 628705082 1.700000e-02 52.8
23 TraesCS3B01G380800 chr6D 90.847 2065 183 2 5107 7171 237758982 237756924 0.000000e+00 2761.0
24 TraesCS3B01G380800 chr6A 89.737 2095 215 0 5112 7206 14748117 14746023 0.000000e+00 2678.0
25 TraesCS3B01G380800 chr6A 94.118 34 2 0 3314 3347 610234749 610234782 1.700000e-02 52.8
26 TraesCS3B01G380800 chr7B 89.695 2096 214 2 5112 7206 615167828 615169922 0.000000e+00 2673.0
27 TraesCS3B01G380800 chr7B 93.233 266 16 2 393 657 149805437 149805701 3.100000e-104 390.0
28 TraesCS3B01G380800 chr7B 100.000 28 0 0 3374 3401 686527469 686527496 1.700000e-02 52.8
29 TraesCS3B01G380800 chr3A 94.122 1310 57 10 7204 8503 597333753 597335052 0.000000e+00 1975.0
30 TraesCS3B01G380800 chr3A 88.828 1271 83 31 673 1916 597329149 597330387 0.000000e+00 1506.0
31 TraesCS3B01G380800 chr3A 96.579 643 21 1 2699 3340 597331326 597331968 0.000000e+00 1064.0
32 TraesCS3B01G380800 chr3A 92.946 723 25 3 3397 4095 597331981 597332701 0.000000e+00 1029.0
33 TraesCS3B01G380800 chr3A 89.176 813 61 13 1916 2714 597330437 597331236 0.000000e+00 989.0
34 TraesCS3B01G380800 chr3A 97.070 512 14 1 4604 5114 597333255 597333766 0.000000e+00 861.0
35 TraesCS3B01G380800 chr3A 95.178 477 11 5 4129 4604 597332699 597333164 0.000000e+00 743.0
36 TraesCS3B01G380800 chr3A 88.682 592 34 11 8575 9145 597335054 597335633 0.000000e+00 691.0
37 TraesCS3B01G380800 chr3A 83.721 86 4 3 8499 8582 709895641 709895718 1.270000e-08 73.1
38 TraesCS3B01G380800 chr3A 83.721 86 4 3 8499 8582 709923637 709923714 1.270000e-08 73.1
39 TraesCS3B01G380800 chr3A 100.000 30 0 0 3319 3348 645146584 645146555 1.000000e-03 56.5
40 TraesCS3B01G380800 chr2D 93.870 261 15 1 398 657 644999394 644999134 8.610000e-105 392.0
41 TraesCS3B01G380800 chr1A 94.118 255 12 3 395 648 174960563 174960815 1.440000e-102 385.0
42 TraesCS3B01G380800 chr1A 86.525 282 34 4 2822 3101 492126553 492126274 3.210000e-79 307.0
43 TraesCS3B01G380800 chr1A 84.916 179 25 2 2361 2539 492127355 492127179 7.300000e-41 180.0
44 TraesCS3B01G380800 chr1A 80.841 214 35 3 1629 1839 492127881 492127671 7.350000e-36 163.0
45 TraesCS3B01G380800 chr1A 87.050 139 18 0 4351 4489 492125639 492125501 3.420000e-34 158.0
46 TraesCS3B01G380800 chr1A 100.000 31 0 0 3310 3340 457957373 457957403 3.570000e-04 58.4
47 TraesCS3B01G380800 chr1A 96.875 32 1 0 3316 3347 428668203 428668172 5.000000e-03 54.7
48 TraesCS3B01G380800 chr1D 92.481 266 18 2 394 658 365804557 365804821 6.700000e-101 379.0
49 TraesCS3B01G380800 chr1D 86.879 282 33 4 2822 3101 393734666 393734945 6.890000e-81 313.0
50 TraesCS3B01G380800 chr1D 81.308 214 34 3 1629 1839 393733332 393733542 1.580000e-37 169.0
51 TraesCS3B01G380800 chr1D 85.366 82 5 3 8500 8579 22502947 22503023 2.740000e-10 78.7
52 TraesCS3B01G380800 chr1D 84.146 82 5 2 8499 8580 183020110 183020037 1.270000e-08 73.1
53 TraesCS3B01G380800 chr5A 92.481 266 17 3 396 658 34841903 34842168 2.410000e-100 377.0
54 TraesCS3B01G380800 chr5A 86.905 84 6 5 8499 8580 535656944 535657024 1.260000e-13 89.8
55 TraesCS3B01G380800 chr5A 96.875 32 0 1 3316 3347 236871307 236871277 1.700000e-02 52.8
56 TraesCS3B01G380800 chr2B 92.748 262 17 2 398 658 603430010 603430270 2.410000e-100 377.0
57 TraesCS3B01G380800 chr4D 92.135 267 18 3 396 660 55965604 55965339 3.120000e-99 374.0
58 TraesCS3B01G380800 chr4A 80.371 377 54 9 8752 9114 612520147 612519777 1.510000e-67 268.0
59 TraesCS3B01G380800 chr4A 81.707 82 7 3 8499 8579 314860946 314860872 2.760000e-05 62.1
60 TraesCS3B01G380800 chr4A 81.707 82 7 3 8499 8579 315036780 315036706 2.760000e-05 62.1
61 TraesCS3B01G380800 chr6B 84.211 95 4 5 8499 8592 49403904 49403988 2.120000e-11 82.4
62 TraesCS3B01G380800 chr6B 72.650 234 55 7 30 257 488894068 488893838 1.650000e-07 69.4
63 TraesCS3B01G380800 chrUn 83.721 86 4 3 8499 8582 478445748 478445671 1.270000e-08 73.1
64 TraesCS3B01G380800 chr4B 83.951 81 7 2 8499 8579 39245367 39245293 1.270000e-08 73.1
65 TraesCS3B01G380800 chr5D 81.707 82 14 1 8500 8580 551876827 551876746 5.930000e-07 67.6
66 TraesCS3B01G380800 chr5D 100.000 29 0 0 3376 3404 244629635 244629663 5.000000e-03 54.7
67 TraesCS3B01G380800 chr7D 83.099 71 6 4 8499 8567 611229613 611229679 9.920000e-05 60.2
68 TraesCS3B01G380800 chr7D 100.000 29 0 0 3320 3348 453144811 453144783 5.000000e-03 54.7
69 TraesCS3B01G380800 chr5B 100.000 28 0 0 3374 3401 554776690 554776663 1.700000e-02 52.8
70 TraesCS3B01G380800 chr2A 100.000 28 0 0 3374 3401 350738160 350738133 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G380800 chr3B 598187708 598196852 9144 False 16888.00 16888 100.000000 1 9145 1 chr3B.!!$F3 9144
1 TraesCS3B01G380800 chr3B 478082606 478084696 2090 False 2723.00 2723 90.162000 5112 7205 1 chr3B.!!$F2 2093
2 TraesCS3B01G380800 chr1B 188910126 188912218 2092 True 3546.00 3546 97.232000 5112 7206 1 chr1B.!!$R1 2094
3 TraesCS3B01G380800 chr1B 390342422 390344514 2092 True 2771.00 2771 90.553000 5112 7206 1 chr1B.!!$R3 2094
4 TraesCS3B01G380800 chr1B 301269979 301272069 2090 True 2617.00 2617 89.260000 5112 7205 1 chr1B.!!$R2 2093
5 TraesCS3B01G380800 chr3D 455050714 455057205 6491 False 1844.60 3339 92.471400 83 9145 5 chr3D.!!$F2 9062
6 TraesCS3B01G380800 chr7A 482728136 482730227 2091 True 2780.00 2780 90.662000 5112 7206 1 chr7A.!!$R2 2094
7 TraesCS3B01G380800 chr7A 299590197 299592298 2101 True 2734.00 2734 90.123000 5101 7206 1 chr7A.!!$R1 2105
8 TraesCS3B01G380800 chr6D 237756924 237758982 2058 True 2761.00 2761 90.847000 5107 7171 1 chr6D.!!$R1 2064
9 TraesCS3B01G380800 chr6A 14746023 14748117 2094 True 2678.00 2678 89.737000 5112 7206 1 chr6A.!!$R1 2094
10 TraesCS3B01G380800 chr7B 615167828 615169922 2094 False 2673.00 2673 89.695000 5112 7206 1 chr7B.!!$F2 2094
11 TraesCS3B01G380800 chr3A 597329149 597335633 6484 False 1107.25 1975 92.822625 673 9145 8 chr3A.!!$F3 8472
12 TraesCS3B01G380800 chr1A 492125501 492127881 2380 True 202.00 307 84.833000 1629 4489 4 chr1A.!!$R2 2860
13 TraesCS3B01G380800 chr1D 393733332 393734945 1613 False 241.00 313 84.093500 1629 3101 2 chr1D.!!$F3 1472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 345 0.033504 ATGACGGCGTGAAGTGAAGT 59.966 50.000 21.19 0.00 0.00 3.01 F
1174 1225 0.105709 CTCCTCCTCCTCCTTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30 F
1352 1403 0.320771 GCATCTCCACACGGAACAGT 60.321 55.000 0.00 0.00 42.21 3.55 F
1933 2050 1.165907 TGTTTGCTAGTGCTTGCGCT 61.166 50.000 9.73 13.32 40.48 5.92 F
2251 2380 1.688735 CCACTAGATGAGATTCGGGCA 59.311 52.381 0.00 0.00 0.00 5.36 F
3606 4620 2.142292 ATCCACCTCTTTTGCCCGCT 62.142 55.000 0.00 0.00 0.00 5.52 F
4658 5840 1.757731 GCTGCATTGGTGGGCCATA 60.758 57.895 10.70 0.00 45.56 2.74 F
5491 6673 1.087771 GGCGGTTGTGAAGGTATCCG 61.088 60.000 0.00 0.00 40.72 4.18 F
7158 8345 0.179089 GCTGACCATGTCTCGCAGAT 60.179 55.000 0.00 0.00 33.89 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 1532 0.790207 CTTTGTGTCGACCGATGTGG 59.210 55.000 14.12 0.00 46.41 4.17 R
1995 2112 2.170607 ACACAGCACAACACTACCTCTT 59.829 45.455 0.00 0.00 0.00 2.85 R
2289 2418 2.214387 GCAACTTGCAAGCTTGAACT 57.786 45.000 30.39 4.16 44.26 3.01 R
2838 3851 3.509442 TCTTGCATGAGTTCCCCATTTT 58.491 40.909 0.00 0.00 0.00 1.82 R
4047 5137 2.005451 CTGACACAGCTACCTCATTGC 58.995 52.381 0.00 0.00 0.00 3.56 R
5285 6467 2.162608 CGTAGATAGGATCAAGGCCGAG 59.837 54.545 0.00 0.00 0.00 4.63 R
5723 6909 0.179029 CAACCTTTCACGGGTCCACT 60.179 55.000 0.00 0.00 35.83 4.00 R
7217 8404 0.392193 CGGGATCAAGCAGAAGCACT 60.392 55.000 0.00 0.00 45.49 4.40 R
8972 10202 0.453950 CGTCGTCGGTGGTAGAACAG 60.454 60.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.782298 CAGACTATGCCTCATAACAATCTG 57.218 41.667 0.00 0.00 0.00 2.90
24 25 6.519382 CAGACTATGCCTCATAACAATCTGA 58.481 40.000 0.00 0.00 31.34 3.27
25 26 6.988580 CAGACTATGCCTCATAACAATCTGAA 59.011 38.462 0.00 0.00 31.34 3.02
26 27 7.496920 CAGACTATGCCTCATAACAATCTGAAA 59.503 37.037 0.00 0.00 31.34 2.69
27 28 7.714377 AGACTATGCCTCATAACAATCTGAAAG 59.286 37.037 0.00 0.00 0.00 2.62
43 44 4.449068 TCTGAAAGAAGATGTCAAAGTCGC 59.551 41.667 0.00 0.00 42.31 5.19
44 45 3.498397 TGAAAGAAGATGTCAAAGTCGCC 59.502 43.478 0.00 0.00 0.00 5.54
45 46 1.714794 AGAAGATGTCAAAGTCGCCG 58.285 50.000 0.00 0.00 0.00 6.46
46 47 0.721718 GAAGATGTCAAAGTCGCCGG 59.278 55.000 0.00 0.00 0.00 6.13
47 48 0.320374 AAGATGTCAAAGTCGCCGGA 59.680 50.000 5.05 0.00 0.00 5.14
48 49 0.389948 AGATGTCAAAGTCGCCGGAC 60.390 55.000 5.05 0.00 43.76 4.79
49 50 1.359459 GATGTCAAAGTCGCCGGACC 61.359 60.000 5.05 0.00 44.54 4.46
50 51 2.029964 GTCAAAGTCGCCGGACCA 59.970 61.111 5.05 0.00 44.54 4.02
51 52 1.595929 GTCAAAGTCGCCGGACCAA 60.596 57.895 5.05 0.00 44.54 3.67
52 53 0.953960 GTCAAAGTCGCCGGACCAAT 60.954 55.000 5.05 0.00 44.54 3.16
53 54 0.609151 TCAAAGTCGCCGGACCAATA 59.391 50.000 5.05 0.00 44.54 1.90
54 55 1.208535 TCAAAGTCGCCGGACCAATAT 59.791 47.619 5.05 0.00 44.54 1.28
55 56 2.014128 CAAAGTCGCCGGACCAATATT 58.986 47.619 5.05 0.00 44.54 1.28
56 57 1.949465 AAGTCGCCGGACCAATATTC 58.051 50.000 5.05 0.00 44.54 1.75
57 58 0.828022 AGTCGCCGGACCAATATTCA 59.172 50.000 5.05 0.00 44.54 2.57
58 59 1.208535 AGTCGCCGGACCAATATTCAA 59.791 47.619 5.05 0.00 44.54 2.69
59 60 1.329599 GTCGCCGGACCAATATTCAAC 59.670 52.381 5.05 0.00 37.19 3.18
60 61 0.661020 CGCCGGACCAATATTCAACC 59.339 55.000 5.05 0.00 0.00 3.77
61 62 1.757682 GCCGGACCAATATTCAACCA 58.242 50.000 5.05 0.00 0.00 3.67
62 63 2.096248 GCCGGACCAATATTCAACCAA 58.904 47.619 5.05 0.00 0.00 3.67
63 64 2.693074 GCCGGACCAATATTCAACCAAT 59.307 45.455 5.05 0.00 0.00 3.16
64 65 3.132111 GCCGGACCAATATTCAACCAATT 59.868 43.478 5.05 0.00 0.00 2.32
65 66 4.681744 CCGGACCAATATTCAACCAATTG 58.318 43.478 0.00 0.00 37.14 2.32
66 67 4.111916 CGGACCAATATTCAACCAATTGC 58.888 43.478 0.00 0.00 35.63 3.56
67 68 4.142182 CGGACCAATATTCAACCAATTGCT 60.142 41.667 0.00 0.00 35.63 3.91
68 69 5.351458 GGACCAATATTCAACCAATTGCTC 58.649 41.667 0.00 0.00 35.63 4.26
69 70 5.127682 GGACCAATATTCAACCAATTGCTCT 59.872 40.000 0.00 0.00 35.63 4.09
70 71 6.212888 ACCAATATTCAACCAATTGCTCTC 57.787 37.500 0.00 0.00 35.63 3.20
71 72 5.127682 ACCAATATTCAACCAATTGCTCTCC 59.872 40.000 0.00 0.00 35.63 3.71
72 73 5.361857 CCAATATTCAACCAATTGCTCTCCT 59.638 40.000 0.00 0.00 35.63 3.69
73 74 6.127253 CCAATATTCAACCAATTGCTCTCCTT 60.127 38.462 0.00 0.00 35.63 3.36
74 75 7.325694 CAATATTCAACCAATTGCTCTCCTTT 58.674 34.615 0.00 0.00 35.63 3.11
75 76 4.589216 TTCAACCAATTGCTCTCCTTTG 57.411 40.909 0.00 0.00 35.63 2.77
76 77 3.565307 TCAACCAATTGCTCTCCTTTGT 58.435 40.909 0.00 0.00 35.63 2.83
77 78 4.724399 TCAACCAATTGCTCTCCTTTGTA 58.276 39.130 0.00 0.00 35.63 2.41
78 79 4.761739 TCAACCAATTGCTCTCCTTTGTAG 59.238 41.667 0.00 0.00 35.63 2.74
79 80 4.640771 ACCAATTGCTCTCCTTTGTAGA 57.359 40.909 0.00 0.00 0.00 2.59
80 81 4.327680 ACCAATTGCTCTCCTTTGTAGAC 58.672 43.478 0.00 0.00 0.00 2.59
81 82 3.372206 CCAATTGCTCTCCTTTGTAGACG 59.628 47.826 0.00 0.00 0.00 4.18
82 83 2.080286 TTGCTCTCCTTTGTAGACGC 57.920 50.000 0.00 0.00 0.00 5.19
83 84 0.966179 TGCTCTCCTTTGTAGACGCA 59.034 50.000 0.00 0.00 0.00 5.24
84 85 1.336887 TGCTCTCCTTTGTAGACGCAC 60.337 52.381 0.00 0.00 0.00 5.34
85 86 1.997669 CTCTCCTTTGTAGACGCACC 58.002 55.000 0.00 0.00 0.00 5.01
86 87 0.242825 TCTCCTTTGTAGACGCACCG 59.757 55.000 0.00 0.00 0.00 4.94
87 88 0.736325 CTCCTTTGTAGACGCACCGG 60.736 60.000 0.00 0.00 0.00 5.28
115 116 9.056005 TGCCAAGATCTAAACATATATGAACAC 57.944 33.333 19.63 4.33 0.00 3.32
128 129 0.602638 TGAACACATCTGGCGACACC 60.603 55.000 0.00 0.00 39.84 4.16
129 130 1.626654 GAACACATCTGGCGACACCG 61.627 60.000 0.00 0.00 43.94 4.94
148 149 0.729690 GATTCTCACAAGGCCTTCGC 59.270 55.000 17.29 0.00 0.00 4.70
152 153 1.294659 CTCACAAGGCCTTCGCTGAC 61.295 60.000 17.29 0.00 34.44 3.51
155 156 4.008933 AAGGCCTTCGCTGACGCT 62.009 61.111 13.78 0.00 39.84 5.07
171 172 3.885297 TGACGCTAGATCAGATGTCATCA 59.115 43.478 15.20 0.00 36.70 3.07
177 178 6.155827 GCTAGATCAGATGTCATCAAGGTAC 58.844 44.000 15.20 2.02 0.00 3.34
179 180 4.889995 AGATCAGATGTCATCAAGGTACGA 59.110 41.667 15.20 0.81 0.00 3.43
188 189 0.609957 TCAAGGTACGAAGAGGCCGA 60.610 55.000 0.00 0.00 0.00 5.54
205 206 4.080299 AGGCCGAAGAGACCTTATTCAAAT 60.080 41.667 0.00 0.00 31.62 2.32
207 208 5.998363 GGCCGAAGAGACCTTATTCAAATAT 59.002 40.000 0.00 0.00 31.62 1.28
214 215 7.782049 AGAGACCTTATTCAAATATGACGACA 58.218 34.615 0.00 0.00 34.61 4.35
241 242 2.516930 CGATGCCGCCAGGGAAAT 60.517 61.111 0.00 0.00 42.67 2.17
242 243 1.227823 CGATGCCGCCAGGGAAATA 60.228 57.895 0.00 0.00 42.67 1.40
283 284 5.584551 AAAGAAACATACCTCCTCTTGGT 57.415 39.130 0.00 0.00 41.28 3.67
337 338 2.180769 CCGAGATGACGGCGTGAA 59.819 61.111 21.19 5.72 46.20 3.18
344 345 0.033504 ATGACGGCGTGAAGTGAAGT 59.966 50.000 21.19 0.00 0.00 3.01
345 346 0.874175 TGACGGCGTGAAGTGAAGTG 60.874 55.000 21.19 0.00 0.00 3.16
346 347 0.596600 GACGGCGTGAAGTGAAGTGA 60.597 55.000 21.19 0.00 0.00 3.41
347 348 0.597637 ACGGCGTGAAGTGAAGTGAG 60.598 55.000 13.76 0.00 0.00 3.51
348 349 1.284982 CGGCGTGAAGTGAAGTGAGG 61.285 60.000 0.00 0.00 0.00 3.86
350 351 1.423395 GCGTGAAGTGAAGTGAGGAG 58.577 55.000 0.00 0.00 0.00 3.69
351 352 1.000163 GCGTGAAGTGAAGTGAGGAGA 60.000 52.381 0.00 0.00 0.00 3.71
352 353 2.545952 GCGTGAAGTGAAGTGAGGAGAA 60.546 50.000 0.00 0.00 0.00 2.87
353 354 3.717707 CGTGAAGTGAAGTGAGGAGAAA 58.282 45.455 0.00 0.00 0.00 2.52
354 355 3.491267 CGTGAAGTGAAGTGAGGAGAAAC 59.509 47.826 0.00 0.00 0.00 2.78
355 356 4.698575 GTGAAGTGAAGTGAGGAGAAACT 58.301 43.478 0.00 0.00 0.00 2.66
356 357 5.119694 GTGAAGTGAAGTGAGGAGAAACTT 58.880 41.667 0.00 0.00 39.31 2.66
357 358 5.007136 GTGAAGTGAAGTGAGGAGAAACTTG 59.993 44.000 0.00 0.00 36.77 3.16
358 359 4.078639 AGTGAAGTGAGGAGAAACTTGG 57.921 45.455 0.00 0.00 36.77 3.61
359 360 3.456277 AGTGAAGTGAGGAGAAACTTGGT 59.544 43.478 0.00 0.00 36.77 3.67
360 361 4.080299 AGTGAAGTGAGGAGAAACTTGGTT 60.080 41.667 0.00 0.00 36.77 3.67
377 378 3.918253 TTGCGGCAGCTAGGGTTGG 62.918 63.158 10.92 0.00 45.42 3.77
396 397 2.041081 TGGGAAGGGGTGTTGACAATAG 59.959 50.000 0.00 0.00 0.00 1.73
397 398 2.041216 GGGAAGGGGTGTTGACAATAGT 59.959 50.000 0.00 0.00 0.00 2.12
398 399 3.264964 GGGAAGGGGTGTTGACAATAGTA 59.735 47.826 0.00 0.00 0.00 1.82
399 400 4.259356 GGAAGGGGTGTTGACAATAGTAC 58.741 47.826 0.00 0.00 0.00 2.73
400 401 4.019591 GGAAGGGGTGTTGACAATAGTACT 60.020 45.833 0.00 0.00 0.00 2.73
401 402 4.820894 AGGGGTGTTGACAATAGTACTC 57.179 45.455 0.00 0.00 0.00 2.59
402 403 3.518303 AGGGGTGTTGACAATAGTACTCC 59.482 47.826 0.00 0.00 0.00 3.85
403 404 3.370209 GGGGTGTTGACAATAGTACTCCC 60.370 52.174 0.00 0.00 38.46 4.30
404 405 3.518303 GGGTGTTGACAATAGTACTCCCT 59.482 47.826 0.00 0.00 37.19 4.20
405 406 4.504858 GGTGTTGACAATAGTACTCCCTG 58.495 47.826 0.00 0.00 0.00 4.45
406 407 4.020485 GGTGTTGACAATAGTACTCCCTGT 60.020 45.833 0.00 0.94 0.00 4.00
407 408 4.929808 GTGTTGACAATAGTACTCCCTGTG 59.070 45.833 0.00 0.00 0.00 3.66
408 409 4.591498 TGTTGACAATAGTACTCCCTGTGT 59.409 41.667 0.00 0.00 0.00 3.72
409 410 5.071250 TGTTGACAATAGTACTCCCTGTGTT 59.929 40.000 0.00 0.00 0.00 3.32
410 411 5.818678 TGACAATAGTACTCCCTGTGTTT 57.181 39.130 0.00 0.00 0.00 2.83
411 412 6.182507 TGACAATAGTACTCCCTGTGTTTT 57.817 37.500 0.00 0.00 0.00 2.43
412 413 6.597562 TGACAATAGTACTCCCTGTGTTTTT 58.402 36.000 0.00 0.00 0.00 1.94
438 439 9.679661 TTTTAGTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
439 440 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
440 441 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
441 442 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
442 443 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
443 444 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
444 445 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
445 446 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
446 447 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
447 448 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
448 449 9.573133 CATATAAGATTTGGTCAAAGTCAAACC 57.427 33.333 2.55 0.00 35.97 3.27
449 450 7.839680 ATAAGATTTGGTCAAAGTCAAACCT 57.160 32.000 2.55 0.00 35.97 3.50
450 451 6.544928 AAGATTTGGTCAAAGTCAAACCTT 57.455 33.333 2.55 0.00 33.29 3.50
451 452 5.906073 AGATTTGGTCAAAGTCAAACCTTG 58.094 37.500 2.55 0.00 35.97 3.61
452 453 5.422012 AGATTTGGTCAAAGTCAAACCTTGT 59.578 36.000 2.55 0.00 35.97 3.16
453 454 5.476091 TTTGGTCAAAGTCAAACCTTGTT 57.524 34.783 0.00 0.00 34.05 2.83
454 455 6.591750 TTTGGTCAAAGTCAAACCTTGTTA 57.408 33.333 0.00 0.00 34.05 2.41
455 456 6.591750 TTGGTCAAAGTCAAACCTTGTTAA 57.408 33.333 0.00 0.00 34.05 2.01
456 457 5.956642 TGGTCAAAGTCAAACCTTGTTAAC 58.043 37.500 0.00 0.00 34.05 2.01
457 458 5.712917 TGGTCAAAGTCAAACCTTGTTAACT 59.287 36.000 7.22 0.00 34.05 2.24
458 459 6.209788 TGGTCAAAGTCAAACCTTGTTAACTT 59.790 34.615 7.22 0.00 34.05 2.66
459 460 7.094631 GGTCAAAGTCAAACCTTGTTAACTTT 58.905 34.615 7.22 11.53 36.35 2.66
460 461 7.062956 GGTCAAAGTCAAACCTTGTTAACTTTG 59.937 37.037 24.37 24.37 45.12 2.77
462 463 7.810759 TCAAAGTCAAACCTTGTTAACTTTGAC 59.189 33.333 27.41 27.41 46.09 3.18
466 467 8.836959 GTCAAACCTTGTTAACTTTGACTAAG 57.163 34.615 27.39 14.42 44.69 2.18
566 567 9.148879 ACCATATAGCTTTAGTGTCTTAGATGT 57.851 33.333 0.00 0.00 0.00 3.06
567 568 9.988815 CCATATAGCTTTAGTGTCTTAGATGTT 57.011 33.333 0.00 0.00 0.00 2.71
631 632 9.745323 GTTTGACTTTGAGCAAATTTTATATGC 57.255 29.630 0.00 0.00 36.51 3.14
632 633 9.486497 TTTGACTTTGAGCAAATTTTATATGCA 57.514 25.926 2.16 0.00 42.45 3.96
633 634 8.692110 TGACTTTGAGCAAATTTTATATGCAG 57.308 30.769 2.16 0.00 42.45 4.41
634 635 8.522003 TGACTTTGAGCAAATTTTATATGCAGA 58.478 29.630 2.16 0.00 42.45 4.26
635 636 8.693542 ACTTTGAGCAAATTTTATATGCAGAC 57.306 30.769 2.16 0.00 42.45 3.51
636 637 8.526147 ACTTTGAGCAAATTTTATATGCAGACT 58.474 29.630 2.16 0.00 42.45 3.24
652 653 6.271488 TGCAGACTAAAATGAAATGAAGGG 57.729 37.500 0.00 0.00 0.00 3.95
653 654 6.009589 TGCAGACTAAAATGAAATGAAGGGA 58.990 36.000 0.00 0.00 0.00 4.20
654 655 6.151648 TGCAGACTAAAATGAAATGAAGGGAG 59.848 38.462 0.00 0.00 0.00 4.30
722 729 5.959583 AATAGAAAATCTCCCGGAGAAGT 57.040 39.130 21.20 9.51 42.27 3.01
724 731 4.642466 AGAAAATCTCCCGGAGAAGTTT 57.358 40.909 21.20 21.27 42.27 2.66
744 754 4.803426 GTCCTGCTCGGTCCTGCG 62.803 72.222 0.00 0.00 0.00 5.18
1005 1053 3.401033 TCCGAAGCAGAAGAAATGACA 57.599 42.857 0.00 0.00 0.00 3.58
1024 1072 1.955458 AATCTCCTCCGCCCTCTCCT 61.955 60.000 0.00 0.00 0.00 3.69
1025 1073 1.955458 ATCTCCTCCGCCCTCTCCTT 61.955 60.000 0.00 0.00 0.00 3.36
1026 1074 2.042843 TCCTCCGCCCTCTCCTTC 60.043 66.667 0.00 0.00 0.00 3.46
1027 1075 3.157949 CCTCCGCCCTCTCCTTCC 61.158 72.222 0.00 0.00 0.00 3.46
1028 1076 2.042435 CTCCGCCCTCTCCTTCCT 60.042 66.667 0.00 0.00 0.00 3.36
1029 1077 2.042843 TCCGCCCTCTCCTTCCTC 60.043 66.667 0.00 0.00 0.00 3.71
1030 1078 2.042435 CCGCCCTCTCCTTCCTCT 60.042 66.667 0.00 0.00 0.00 3.69
1031 1079 2.131067 CCGCCCTCTCCTTCCTCTC 61.131 68.421 0.00 0.00 0.00 3.20
1032 1080 2.131067 CGCCCTCTCCTTCCTCTCC 61.131 68.421 0.00 0.00 0.00 3.71
1174 1225 0.105709 CTCCTCCTCCTCCTTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
1245 1296 4.614036 CCGCCCCAAACCCCAGTT 62.614 66.667 0.00 0.00 38.03 3.16
1255 1306 3.771160 CCCCAGTTCCCGTCTCCG 61.771 72.222 0.00 0.00 0.00 4.63
1258 1309 2.657237 CAGTTCCCGTCTCCGCTT 59.343 61.111 0.00 0.00 0.00 4.68
1261 1312 1.005394 GTTCCCGTCTCCGCTTCAA 60.005 57.895 0.00 0.00 0.00 2.69
1275 1326 4.572571 TCAACGCCGCCCCAAACT 62.573 61.111 0.00 0.00 0.00 2.66
1281 1332 2.282783 GCCGCCCCAAACTCCAATT 61.283 57.895 0.00 0.00 0.00 2.32
1284 1335 1.890174 GCCCCAAACTCCAATTCCG 59.110 57.895 0.00 0.00 0.00 4.30
1294 1345 1.078426 CCAATTCCGGTCTCCGCTT 60.078 57.895 0.00 0.00 46.86 4.68
1317 1368 3.621805 CCGCCCCAAACCCCAAAC 61.622 66.667 0.00 0.00 0.00 2.93
1324 1375 1.152631 CAAACCCCAAACCCGGTCT 60.153 57.895 0.00 0.00 0.00 3.85
1352 1403 0.320771 GCATCTCCACACGGAACAGT 60.321 55.000 0.00 0.00 42.21 3.55
1399 1450 1.347050 CCGATCTACCCCGACTAGAGA 59.653 57.143 0.00 0.00 0.00 3.10
1403 1454 2.475155 TCTACCCCGACTAGAGACTGA 58.525 52.381 0.00 0.00 0.00 3.41
1416 1467 2.024319 GACTGACGCCACTGCAGAC 61.024 63.158 23.35 8.42 37.32 3.51
1481 1532 3.245948 CTGCCGCTGCACAAGTGAC 62.246 63.158 0.00 0.00 44.23 3.67
1507 1558 1.630148 GGTCGACACAAAGGAGATCG 58.370 55.000 18.91 0.00 0.00 3.69
1540 1591 3.386237 GCGGGAGAGGTGCAGAGT 61.386 66.667 0.00 0.00 0.00 3.24
1545 1596 1.610673 GAGAGGTGCAGAGTGGGGA 60.611 63.158 0.00 0.00 0.00 4.81
1548 1599 2.607750 GGTGCAGAGTGGGGAGGA 60.608 66.667 0.00 0.00 0.00 3.71
1549 1600 2.664081 GGTGCAGAGTGGGGAGGAG 61.664 68.421 0.00 0.00 0.00 3.69
1550 1601 1.915769 GTGCAGAGTGGGGAGGAGT 60.916 63.158 0.00 0.00 0.00 3.85
1551 1602 1.610673 TGCAGAGTGGGGAGGAGTC 60.611 63.158 0.00 0.00 0.00 3.36
1552 1603 2.716017 GCAGAGTGGGGAGGAGTCG 61.716 68.421 0.00 0.00 0.00 4.18
1553 1604 2.055042 CAGAGTGGGGAGGAGTCGG 61.055 68.421 0.00 0.00 0.00 4.79
1554 1605 3.462678 GAGTGGGGAGGAGTCGGC 61.463 72.222 0.00 0.00 0.00 5.54
1931 2048 1.609932 CATGTTTGCTAGTGCTTGCG 58.390 50.000 0.00 0.00 40.48 4.85
1933 2050 1.165907 TGTTTGCTAGTGCTTGCGCT 61.166 50.000 9.73 13.32 40.48 5.92
1953 2070 5.279384 CGCTCTTATTCCACAACGTAGTAT 58.721 41.667 0.00 0.00 45.00 2.12
1956 2073 7.113124 CGCTCTTATTCCACAACGTAGTATTAG 59.887 40.741 0.00 0.00 45.00 1.73
1988 2105 8.874744 ATTGCTATAATTGGTGATCTTATGCT 57.125 30.769 0.00 0.00 0.00 3.79
1990 2107 7.683578 TGCTATAATTGGTGATCTTATGCTCT 58.316 34.615 0.00 0.00 0.00 4.09
1991 2108 7.605309 TGCTATAATTGGTGATCTTATGCTCTG 59.395 37.037 0.00 0.00 0.00 3.35
1992 2109 7.821359 GCTATAATTGGTGATCTTATGCTCTGA 59.179 37.037 0.00 0.00 0.00 3.27
2044 2161 4.394920 TGCTAGTGCAGTTTATTGTAAGGC 59.605 41.667 0.00 0.00 45.31 4.35
2046 2163 2.747446 AGTGCAGTTTATTGTAAGGCGG 59.253 45.455 0.00 0.00 0.00 6.13
2052 2169 5.621329 GCAGTTTATTGTAAGGCGGAATGTT 60.621 40.000 0.00 0.00 0.00 2.71
2075 2192 4.096231 TCATATTTGCACATCCTCCAAACG 59.904 41.667 0.00 0.00 32.02 3.60
2084 2201 3.197766 ACATCCTCCAAACGCAATAGAGA 59.802 43.478 0.00 0.00 0.00 3.10
2085 2202 3.973206 TCCTCCAAACGCAATAGAGAA 57.027 42.857 0.00 0.00 0.00 2.87
2114 2231 4.353383 GGGATTGTACCCTTCATACTCC 57.647 50.000 0.00 0.00 45.90 3.85
2147 2264 4.425577 ACTGTACCTACGGTTAGTTTCG 57.574 45.455 0.00 0.00 42.88 3.46
2149 2266 3.417101 TGTACCTACGGTTAGTTTCGGA 58.583 45.455 0.00 0.00 37.09 4.55
2191 2320 8.066612 ACTTATGAATCACCCATTTTAACCAG 57.933 34.615 0.00 0.00 0.00 4.00
2196 2325 6.208599 TGAATCACCCATTTTAACCAGTTCTC 59.791 38.462 0.00 0.00 0.00 2.87
2240 2369 6.816136 TGGTTACATGTGTATCCACTAGATG 58.184 40.000 9.11 0.00 42.38 2.90
2241 2370 6.609616 TGGTTACATGTGTATCCACTAGATGA 59.390 38.462 9.11 0.00 42.38 2.92
2242 2371 7.148641 GGTTACATGTGTATCCACTAGATGAG 58.851 42.308 9.11 0.00 42.34 2.90
2243 2372 7.014326 GGTTACATGTGTATCCACTAGATGAGA 59.986 40.741 9.11 0.00 42.34 3.27
2244 2373 8.580720 GTTACATGTGTATCCACTAGATGAGAT 58.419 37.037 9.11 0.00 42.34 2.75
2245 2374 7.609097 ACATGTGTATCCACTAGATGAGATT 57.391 36.000 0.00 0.00 42.34 2.40
2246 2375 7.665690 ACATGTGTATCCACTAGATGAGATTC 58.334 38.462 0.00 0.00 42.34 2.52
2247 2376 6.319141 TGTGTATCCACTAGATGAGATTCG 57.681 41.667 0.00 0.00 42.34 3.34
2248 2377 5.241728 TGTGTATCCACTAGATGAGATTCGG 59.758 44.000 0.00 0.00 42.34 4.30
2249 2378 4.767409 TGTATCCACTAGATGAGATTCGGG 59.233 45.833 0.00 0.00 36.33 5.14
2250 2379 1.964223 TCCACTAGATGAGATTCGGGC 59.036 52.381 0.00 0.00 0.00 6.13
2251 2380 1.688735 CCACTAGATGAGATTCGGGCA 59.311 52.381 0.00 0.00 0.00 5.36
2252 2381 2.301296 CCACTAGATGAGATTCGGGCAT 59.699 50.000 0.00 0.00 0.00 4.40
2253 2382 3.244353 CCACTAGATGAGATTCGGGCATT 60.244 47.826 0.00 0.00 0.00 3.56
2254 2383 4.384056 CACTAGATGAGATTCGGGCATTT 58.616 43.478 0.00 0.00 0.00 2.32
2255 2384 4.818546 CACTAGATGAGATTCGGGCATTTT 59.181 41.667 0.00 0.00 0.00 1.82
2260 2389 7.440523 AGATGAGATTCGGGCATTTTTATAC 57.559 36.000 0.00 0.00 0.00 1.47
2262 2391 6.618287 TGAGATTCGGGCATTTTTATACTG 57.382 37.500 0.00 0.00 0.00 2.74
2278 2407 7.864108 TTTATACTGACGTACTTAGGCACTA 57.136 36.000 0.00 0.00 41.75 2.74
2296 2425 8.329203 AGGCACTAATTCTTCTAAAGTTCAAG 57.671 34.615 0.00 0.00 36.02 3.02
2297 2426 7.024171 GGCACTAATTCTTCTAAAGTTCAAGC 58.976 38.462 0.00 0.00 0.00 4.01
2298 2427 7.094592 GGCACTAATTCTTCTAAAGTTCAAGCT 60.095 37.037 0.00 0.00 0.00 3.74
2299 2428 8.293157 GCACTAATTCTTCTAAAGTTCAAGCTT 58.707 33.333 0.00 0.00 0.00 3.74
2300 2429 9.604626 CACTAATTCTTCTAAAGTTCAAGCTTG 57.395 33.333 20.81 20.81 0.00 4.01
2301 2430 8.293157 ACTAATTCTTCTAAAGTTCAAGCTTGC 58.707 33.333 21.99 8.77 0.00 4.01
2302 2431 6.639632 ATTCTTCTAAAGTTCAAGCTTGCA 57.360 33.333 21.99 8.38 0.00 4.08
2303 2432 6.449635 TTCTTCTAAAGTTCAAGCTTGCAA 57.550 33.333 21.99 13.48 0.00 4.08
2304 2433 6.064846 TCTTCTAAAGTTCAAGCTTGCAAG 57.935 37.500 22.44 22.44 0.00 4.01
2637 3010 7.390823 TGCACATTCTTGGTGATACTTAACTA 58.609 34.615 0.00 0.00 38.54 2.24
2663 3036 2.383298 CAACTGCACACCGTAAGTTG 57.617 50.000 0.00 0.00 42.37 3.16
2692 3065 5.784750 TCAGTGACATGCTTCTAAAATCG 57.215 39.130 0.00 0.00 0.00 3.34
2737 3215 4.150627 CCTATGATTATCGGTGCAAGTTCG 59.849 45.833 0.00 0.00 0.00 3.95
2838 3851 8.291191 TGTTTCAATAGATCATGCCACAAATA 57.709 30.769 0.00 0.00 0.00 1.40
3229 4243 6.051717 CCCATGTTTGGTTTTGTGTAATTCA 58.948 36.000 0.00 0.00 41.91 2.57
3290 4304 5.982516 TGTCATGCAATTCCTGTGTAAAAAC 59.017 36.000 0.00 0.00 0.00 2.43
3293 4307 7.171337 GTCATGCAATTCCTGTGTAAAAACATT 59.829 33.333 0.00 0.00 0.00 2.71
3296 4310 9.723601 ATGCAATTCCTGTGTAAAAACATTATT 57.276 25.926 0.00 0.00 0.00 1.40
3343 4357 6.547930 ACTCCCTCTGTAAAGAAATACTCC 57.452 41.667 0.00 0.00 0.00 3.85
3344 4358 5.425862 ACTCCCTCTGTAAAGAAATACTCCC 59.574 44.000 0.00 0.00 0.00 4.30
3345 4359 5.600749 TCCCTCTGTAAAGAAATACTCCCT 58.399 41.667 0.00 0.00 0.00 4.20
3347 4361 5.663556 CCCTCTGTAAAGAAATACTCCCTCT 59.336 44.000 0.00 0.00 0.00 3.69
3348 4362 6.839657 CCCTCTGTAAAGAAATACTCCCTCTA 59.160 42.308 0.00 0.00 0.00 2.43
3349 4363 7.201929 CCCTCTGTAAAGAAATACTCCCTCTAC 60.202 44.444 0.00 0.00 0.00 2.59
3350 4364 7.342284 CCTCTGTAAAGAAATACTCCCTCTACA 59.658 40.741 0.00 0.00 0.00 2.74
3352 4366 9.096823 TCTGTAAAGAAATACTCCCTCTACAAA 57.903 33.333 0.00 0.00 0.00 2.83
3353 4367 9.152595 CTGTAAAGAAATACTCCCTCTACAAAC 57.847 37.037 0.00 0.00 0.00 2.93
3354 4368 8.653191 TGTAAAGAAATACTCCCTCTACAAACA 58.347 33.333 0.00 0.00 0.00 2.83
3355 4369 9.668497 GTAAAGAAATACTCCCTCTACAAACAT 57.332 33.333 0.00 0.00 0.00 2.71
3356 4370 8.567285 AAAGAAATACTCCCTCTACAAACATG 57.433 34.615 0.00 0.00 0.00 3.21
3357 4371 7.259088 AGAAATACTCCCTCTACAAACATGT 57.741 36.000 0.00 0.00 0.00 3.21
3358 4372 7.690256 AGAAATACTCCCTCTACAAACATGTT 58.310 34.615 4.92 4.92 0.00 2.71
3359 4373 8.822805 AGAAATACTCCCTCTACAAACATGTTA 58.177 33.333 12.39 0.00 0.00 2.41
3360 4374 9.099454 GAAATACTCCCTCTACAAACATGTTAG 57.901 37.037 12.39 6.00 0.00 2.34
3361 4375 7.973048 ATACTCCCTCTACAAACATGTTAGA 57.027 36.000 12.39 10.25 0.00 2.10
3362 4376 6.681729 ACTCCCTCTACAAACATGTTAGAA 57.318 37.500 12.39 0.00 0.00 2.10
3363 4377 7.259088 ACTCCCTCTACAAACATGTTAGAAT 57.741 36.000 12.39 0.41 0.00 2.40
3364 4378 8.375493 ACTCCCTCTACAAACATGTTAGAATA 57.625 34.615 12.39 1.60 0.00 1.75
3365 4379 8.993424 ACTCCCTCTACAAACATGTTAGAATAT 58.007 33.333 12.39 0.00 0.00 1.28
3366 4380 9.265901 CTCCCTCTACAAACATGTTAGAATATG 57.734 37.037 12.39 7.81 34.19 1.78
3367 4381 8.768397 TCCCTCTACAAACATGTTAGAATATGT 58.232 33.333 12.39 13.39 41.64 2.29
3368 4382 8.830580 CCCTCTACAAACATGTTAGAATATGTG 58.169 37.037 12.39 6.31 39.41 3.21
3369 4383 9.383519 CCTCTACAAACATGTTAGAATATGTGT 57.616 33.333 12.39 11.97 39.41 3.72
3371 4385 9.936759 TCTACAAACATGTTAGAATATGTGTCA 57.063 29.630 12.39 0.00 39.41 3.58
3562 4576 5.938438 TTGAAGTGCAAATAAAAATGGGC 57.062 34.783 0.00 0.00 32.46 5.36
3606 4620 2.142292 ATCCACCTCTTTTGCCCGCT 62.142 55.000 0.00 0.00 0.00 5.52
3625 4639 4.023536 CCGCTTTGCTTTCTTTAGTTGGTA 60.024 41.667 0.00 0.00 0.00 3.25
3794 4808 4.943705 TGAAGATGACTGGAATGGTTAAGC 59.056 41.667 0.00 0.00 0.00 3.09
3808 4822 4.766375 TGGTTAAGCTCTATCTTTTCCCG 58.234 43.478 6.19 0.00 0.00 5.14
4002 5039 9.539825 TGTTATATCAACATGCAAAACTGTTTT 57.460 25.926 12.50 12.50 33.45 2.43
4047 5137 5.476599 TGAATCCATAAAAACAGTGGACAGG 59.523 40.000 0.00 0.00 44.21 4.00
4191 5281 7.567458 ACAAGTGGTAAGTGGTAAGACTTTTA 58.433 34.615 0.00 0.00 37.38 1.52
4257 5347 6.996180 TGCATTACTACCTAGGAGCTAAAT 57.004 37.500 17.98 5.61 0.00 1.40
4266 5356 8.430431 ACTACCTAGGAGCTAAATTATTTGTCC 58.570 37.037 17.98 4.33 0.00 4.02
4301 5391 3.251729 CCCTGTCTATTTTGCATCCATCG 59.748 47.826 0.00 0.00 0.00 3.84
4311 5401 3.902261 TGCATCCATCGTATGATTTGC 57.098 42.857 13.60 13.60 34.95 3.68
4393 5483 2.686915 CAAATCAATCTGCTGGAGGACC 59.313 50.000 0.00 0.00 0.00 4.46
4658 5840 1.757731 GCTGCATTGGTGGGCCATA 60.758 57.895 10.70 0.00 45.56 2.74
4683 5865 5.781210 TGATTTGTGCCATGTGAAAGTAA 57.219 34.783 0.00 0.00 0.00 2.24
4858 6040 4.043435 AGGAAATAGTTGGCCCATATCCTC 59.957 45.833 0.00 0.00 28.91 3.71
5007 6189 7.538678 GTGAATTTGCAGTTAATTGGTCTAGTG 59.461 37.037 0.00 0.00 0.00 2.74
5165 6347 7.115378 GCGTTTCATTTCATTGAAAAGATGAGT 59.885 33.333 15.34 0.00 44.71 3.41
5491 6673 1.087771 GGCGGTTGTGAAGGTATCCG 61.088 60.000 0.00 0.00 40.72 4.18
5723 6909 2.000048 AGTTTCCAGGAGGGGCATTTA 59.000 47.619 0.00 0.00 37.22 1.40
5836 7022 3.052082 GCTGATGTGCTGCACGGT 61.052 61.111 25.88 17.80 40.75 4.83
6725 7912 2.029290 GTCATCGGCGTACAGGGATATT 60.029 50.000 6.85 0.00 0.00 1.28
6751 7938 3.998672 GTCTCGTCGGGGGTGCAA 61.999 66.667 0.00 0.00 0.00 4.08
6974 8161 0.810031 CGAATCCGTACTGGCCAAGG 60.810 60.000 7.01 8.44 37.80 3.61
7153 8340 2.887568 GCGGCTGACCATGTCTCG 60.888 66.667 0.00 0.00 34.57 4.04
7158 8345 0.179089 GCTGACCATGTCTCGCAGAT 60.179 55.000 0.00 0.00 33.89 2.90
7199 8386 2.508526 AGCACCTTCGCAAAGATCTTT 58.491 42.857 15.11 15.11 34.14 2.52
7355 8542 9.088512 CAGTACTTGTCATTCCTTATTGAGTAC 57.911 37.037 0.00 0.00 0.00 2.73
7356 8543 9.036980 AGTACTTGTCATTCCTTATTGAGTACT 57.963 33.333 0.00 0.00 31.68 2.73
7357 8544 9.654663 GTACTTGTCATTCCTTATTGAGTACTT 57.345 33.333 0.00 0.00 0.00 2.24
7367 8554 8.732746 TCCTTATTGAGTACTTATCTTTTGGC 57.267 34.615 0.00 0.00 0.00 4.52
7599 8792 3.832490 TGCTGACCACTCTAGTTACATGT 59.168 43.478 2.69 2.69 0.00 3.21
7709 8902 1.737793 GTTGTACCCTTTGATCAGCCG 59.262 52.381 0.00 0.00 0.00 5.52
7721 8914 3.726517 CAGCCGGACACTTTGCCG 61.727 66.667 5.05 0.00 46.80 5.69
7790 8983 7.281324 TGTGAATCTTTTAATACATACCCACGG 59.719 37.037 0.00 0.00 0.00 4.94
7833 9026 2.091389 AGCTATCTCCTTCAGAGCCTCA 60.091 50.000 0.00 0.00 42.90 3.86
7846 9039 4.530553 TCAGAGCCTCACAAATAGGTACAA 59.469 41.667 0.00 0.00 36.43 2.41
7932 9125 9.124888 GCTAGTGCAAGCAATCTTATGCCTATT 62.125 40.741 5.50 0.00 42.24 1.73
8009 9207 6.021030 ACTTAGACCTGGTAGATGGTTTGTA 58.979 40.000 0.00 0.00 36.59 2.41
8048 9246 6.187682 AGGAATGATTAGAAAAATGGACCGT 58.812 36.000 0.00 0.00 0.00 4.83
8224 9425 2.736721 CAGGTTCTTACACGTGGTGATG 59.263 50.000 21.57 7.16 36.96 3.07
8293 9494 5.786401 ACAAGCTCTTAATCGTTGTGATC 57.214 39.130 0.00 0.00 35.84 2.92
8307 9508 1.425066 TGTGATCCCAGCTTGTCCTTT 59.575 47.619 0.00 0.00 0.00 3.11
8354 9555 7.447594 ACCTGATTCTTTGAATTTTGATTGCT 58.552 30.769 0.00 0.00 0.00 3.91
8390 9591 1.879372 GCACAGATGACACTCAGGCAA 60.879 52.381 0.00 0.00 39.98 4.52
8403 9604 1.360852 TCAGGCAACCCCCATGTAAAT 59.639 47.619 0.00 0.00 37.17 1.40
8421 9622 9.430838 CATGTAAATGATCTTTCTCGATTTGTC 57.569 33.333 0.00 0.00 0.00 3.18
8433 9634 3.990092 TCGATTTGTCTGCAGTTAGTGT 58.010 40.909 14.67 0.00 0.00 3.55
8465 9666 2.309613 TGATTTTGCTGTGCAGAGGTT 58.690 42.857 13.44 0.00 40.61 3.50
8506 9707 4.939052 GCCTGTGGCTAGAGTAATCTAA 57.061 45.455 1.03 0.00 46.69 2.10
8507 9708 5.476091 GCCTGTGGCTAGAGTAATCTAAT 57.524 43.478 1.03 0.00 46.69 1.73
8508 9709 6.591750 GCCTGTGGCTAGAGTAATCTAATA 57.408 41.667 1.03 0.00 46.69 0.98
8509 9710 7.176589 GCCTGTGGCTAGAGTAATCTAATAT 57.823 40.000 1.03 0.00 46.69 1.28
8510 9711 8.294954 GCCTGTGGCTAGAGTAATCTAATATA 57.705 38.462 1.03 0.00 46.69 0.86
8511 9712 8.750298 GCCTGTGGCTAGAGTAATCTAATATAA 58.250 37.037 1.03 0.00 46.69 0.98
8516 9717 9.755122 TGGCTAGAGTAATCTAATATAAGAGCA 57.245 33.333 8.93 0.00 0.00 4.26
8536 9737 9.810545 AAGAGCATTTAGATCACTAAACTAGAC 57.189 33.333 0.00 0.00 46.74 2.59
8537 9738 8.972127 AGAGCATTTAGATCACTAAACTAGACA 58.028 33.333 0.00 0.00 46.74 3.41
8538 9739 9.587772 GAGCATTTAGATCACTAAACTAGACAA 57.412 33.333 0.00 0.00 46.74 3.18
8539 9740 9.372369 AGCATTTAGATCACTAAACTAGACAAC 57.628 33.333 0.00 0.00 46.74 3.32
8540 9741 9.372369 GCATTTAGATCACTAAACTAGACAACT 57.628 33.333 0.00 0.00 46.74 3.16
8640 9841 1.207089 CTGGAACGGGAGCATGTCTTA 59.793 52.381 0.00 0.00 0.00 2.10
8666 9867 1.135199 CCATGCTTCGCTGATTTTGCT 60.135 47.619 0.00 0.00 0.00 3.91
8669 9870 2.396601 TGCTTCGCTGATTTTGCTTTG 58.603 42.857 0.00 0.00 0.00 2.77
8859 10077 1.864711 CAAGGCTTTCGACTTCGTCAA 59.135 47.619 0.00 0.00 35.94 3.18
8975 10205 4.655647 CACCTGGGCTGCTGCTGT 62.656 66.667 15.64 5.32 39.59 4.40
8976 10206 3.894638 ACCTGGGCTGCTGCTGTT 61.895 61.111 15.64 0.00 39.59 3.16
8977 10207 3.060615 CCTGGGCTGCTGCTGTTC 61.061 66.667 15.64 0.00 39.59 3.18
8978 10208 2.033757 CTGGGCTGCTGCTGTTCT 59.966 61.111 15.64 0.00 39.59 3.01
8979 10209 1.297689 CTGGGCTGCTGCTGTTCTA 59.702 57.895 15.64 0.00 39.59 2.10
8980 10210 1.003355 TGGGCTGCTGCTGTTCTAC 60.003 57.895 15.64 0.00 39.59 2.59
8981 10211 1.746991 GGGCTGCTGCTGTTCTACC 60.747 63.158 15.64 2.36 39.59 3.18
8982 10212 1.003355 GGCTGCTGCTGTTCTACCA 60.003 57.895 15.64 0.00 39.59 3.25
8983 10213 1.301677 GGCTGCTGCTGTTCTACCAC 61.302 60.000 15.64 0.00 39.59 4.16
9010 10252 1.898574 CTTGCAACAAGGCGACCCT 60.899 57.895 0.00 0.00 45.77 4.34
9098 10340 3.006323 AGCTGGTATCTTCAAGCCTATCG 59.994 47.826 0.00 0.00 0.00 2.92
9105 10347 2.093500 TCTTCAAGCCTATCGTGCACAT 60.093 45.455 18.64 11.83 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.712639 TCTTTCAGATTGTTATGAGGCATAGTC 59.287 37.037 0.00 0.00 0.00 2.59
3 4 7.568349 TCTTTCAGATTGTTATGAGGCATAGT 58.432 34.615 0.00 0.00 0.00 2.12
4 5 8.442632 TTCTTTCAGATTGTTATGAGGCATAG 57.557 34.615 0.00 0.00 0.00 2.23
6 7 7.114754 TCTTCTTTCAGATTGTTATGAGGCAT 58.885 34.615 0.00 0.00 0.00 4.40
7 8 6.475504 TCTTCTTTCAGATTGTTATGAGGCA 58.524 36.000 0.00 0.00 0.00 4.75
8 9 6.992063 TCTTCTTTCAGATTGTTATGAGGC 57.008 37.500 0.00 0.00 0.00 4.70
9 10 8.503458 ACATCTTCTTTCAGATTGTTATGAGG 57.497 34.615 0.00 0.00 30.50 3.86
10 11 9.159364 TGACATCTTCTTTCAGATTGTTATGAG 57.841 33.333 0.00 0.00 30.50 2.90
11 12 9.506018 TTGACATCTTCTTTCAGATTGTTATGA 57.494 29.630 0.00 0.00 30.50 2.15
14 15 9.342308 ACTTTGACATCTTCTTTCAGATTGTTA 57.658 29.630 0.00 0.00 30.50 2.41
15 16 8.230472 ACTTTGACATCTTCTTTCAGATTGTT 57.770 30.769 0.00 0.00 30.50 2.83
16 17 7.307632 CGACTTTGACATCTTCTTTCAGATTGT 60.308 37.037 0.00 0.00 30.50 2.71
17 18 7.014115 CGACTTTGACATCTTCTTTCAGATTG 58.986 38.462 0.00 0.00 30.50 2.67
18 19 6.348050 GCGACTTTGACATCTTCTTTCAGATT 60.348 38.462 0.00 0.00 30.50 2.40
19 20 5.121454 GCGACTTTGACATCTTCTTTCAGAT 59.879 40.000 0.00 0.00 33.44 2.90
20 21 4.449068 GCGACTTTGACATCTTCTTTCAGA 59.551 41.667 0.00 0.00 0.00 3.27
21 22 4.377841 GGCGACTTTGACATCTTCTTTCAG 60.378 45.833 0.00 0.00 0.00 3.02
22 23 3.498397 GGCGACTTTGACATCTTCTTTCA 59.502 43.478 0.00 0.00 0.00 2.69
23 24 3.423645 CGGCGACTTTGACATCTTCTTTC 60.424 47.826 0.00 0.00 0.00 2.62
24 25 2.480419 CGGCGACTTTGACATCTTCTTT 59.520 45.455 0.00 0.00 0.00 2.52
25 26 2.069273 CGGCGACTTTGACATCTTCTT 58.931 47.619 0.00 0.00 0.00 2.52
26 27 1.673033 CCGGCGACTTTGACATCTTCT 60.673 52.381 9.30 0.00 0.00 2.85
27 28 0.721718 CCGGCGACTTTGACATCTTC 59.278 55.000 9.30 0.00 0.00 2.87
28 29 0.320374 TCCGGCGACTTTGACATCTT 59.680 50.000 9.30 0.00 0.00 2.40
29 30 0.389948 GTCCGGCGACTTTGACATCT 60.390 55.000 9.30 0.00 35.99 2.90
30 31 1.359459 GGTCCGGCGACTTTGACATC 61.359 60.000 9.30 0.00 39.15 3.06
31 32 1.375523 GGTCCGGCGACTTTGACAT 60.376 57.895 9.30 0.00 39.15 3.06
32 33 2.029964 GGTCCGGCGACTTTGACA 59.970 61.111 9.30 0.00 39.15 3.58
33 34 0.953960 ATTGGTCCGGCGACTTTGAC 60.954 55.000 9.30 6.58 39.15 3.18
34 35 0.609151 TATTGGTCCGGCGACTTTGA 59.391 50.000 9.30 0.00 39.15 2.69
35 36 1.663695 ATATTGGTCCGGCGACTTTG 58.336 50.000 9.30 0.00 39.15 2.77
36 37 2.285977 GAATATTGGTCCGGCGACTTT 58.714 47.619 9.30 0.00 39.15 2.66
37 38 1.208535 TGAATATTGGTCCGGCGACTT 59.791 47.619 9.30 0.00 39.15 3.01
38 39 0.828022 TGAATATTGGTCCGGCGACT 59.172 50.000 9.30 0.00 39.15 4.18
39 40 1.329599 GTTGAATATTGGTCCGGCGAC 59.670 52.381 9.30 4.52 38.38 5.19
40 41 1.658994 GTTGAATATTGGTCCGGCGA 58.341 50.000 9.30 0.00 0.00 5.54
41 42 0.661020 GGTTGAATATTGGTCCGGCG 59.339 55.000 0.00 0.00 0.00 6.46
42 43 1.757682 TGGTTGAATATTGGTCCGGC 58.242 50.000 0.00 0.00 0.00 6.13
43 44 4.681744 CAATTGGTTGAATATTGGTCCGG 58.318 43.478 0.00 0.00 37.53 5.14
44 45 4.111916 GCAATTGGTTGAATATTGGTCCG 58.888 43.478 7.72 0.00 37.53 4.79
45 46 5.343307 AGCAATTGGTTGAATATTGGTCC 57.657 39.130 3.82 0.00 35.72 4.46
47 48 5.127682 GGAGAGCAATTGGTTGAATATTGGT 59.872 40.000 12.13 0.00 41.22 3.67
48 49 5.361857 AGGAGAGCAATTGGTTGAATATTGG 59.638 40.000 12.13 0.00 37.53 3.16
49 50 6.461110 AGGAGAGCAATTGGTTGAATATTG 57.539 37.500 12.13 0.00 37.53 1.90
50 51 7.038799 ACAAAGGAGAGCAATTGGTTGAATATT 60.039 33.333 12.13 1.23 37.53 1.28
51 52 6.438425 ACAAAGGAGAGCAATTGGTTGAATAT 59.562 34.615 12.13 0.00 37.53 1.28
52 53 5.774690 ACAAAGGAGAGCAATTGGTTGAATA 59.225 36.000 12.13 0.00 37.53 1.75
53 54 4.590222 ACAAAGGAGAGCAATTGGTTGAAT 59.410 37.500 12.13 0.00 37.53 2.57
54 55 3.960102 ACAAAGGAGAGCAATTGGTTGAA 59.040 39.130 12.13 0.00 37.53 2.69
55 56 3.565307 ACAAAGGAGAGCAATTGGTTGA 58.435 40.909 12.13 0.00 37.53 3.18
56 57 4.761739 TCTACAAAGGAGAGCAATTGGTTG 59.238 41.667 12.13 7.36 38.39 3.77
57 58 4.762251 GTCTACAAAGGAGAGCAATTGGTT 59.238 41.667 12.13 1.91 0.00 3.67
58 59 4.327680 GTCTACAAAGGAGAGCAATTGGT 58.672 43.478 10.50 10.50 0.00 3.67
59 60 3.372206 CGTCTACAAAGGAGAGCAATTGG 59.628 47.826 7.72 0.00 0.00 3.16
60 61 3.181516 GCGTCTACAAAGGAGAGCAATTG 60.182 47.826 0.00 0.00 0.00 2.32
61 62 3.003480 GCGTCTACAAAGGAGAGCAATT 58.997 45.455 0.00 0.00 0.00 2.32
62 63 2.028112 TGCGTCTACAAAGGAGAGCAAT 60.028 45.455 0.00 0.00 29.80 3.56
63 64 1.343142 TGCGTCTACAAAGGAGAGCAA 59.657 47.619 0.00 0.00 29.80 3.91
64 65 0.966179 TGCGTCTACAAAGGAGAGCA 59.034 50.000 0.00 0.00 0.00 4.26
65 66 1.351153 GTGCGTCTACAAAGGAGAGC 58.649 55.000 0.00 0.00 0.00 4.09
66 67 1.732732 CGGTGCGTCTACAAAGGAGAG 60.733 57.143 0.00 0.00 0.00 3.20
67 68 0.242825 CGGTGCGTCTACAAAGGAGA 59.757 55.000 0.00 0.00 0.00 3.71
68 69 0.736325 CCGGTGCGTCTACAAAGGAG 60.736 60.000 0.00 0.00 0.00 3.69
69 70 1.290955 CCGGTGCGTCTACAAAGGA 59.709 57.895 0.00 0.00 0.00 3.36
70 71 2.388232 GCCGGTGCGTCTACAAAGG 61.388 63.158 1.90 0.00 0.00 3.11
71 72 1.374252 AGCCGGTGCGTCTACAAAG 60.374 57.895 1.90 0.00 44.33 2.77
72 73 1.666553 CAGCCGGTGCGTCTACAAA 60.667 57.895 1.90 0.00 44.33 2.83
73 74 2.048597 CAGCCGGTGCGTCTACAA 60.049 61.111 1.90 0.00 44.33 2.41
74 75 4.735132 GCAGCCGGTGCGTCTACA 62.735 66.667 6.84 0.00 43.99 2.74
82 83 0.107703 TTAGATCTTGGCAGCCGGTG 60.108 55.000 7.03 0.89 0.00 4.94
83 84 0.618458 TTTAGATCTTGGCAGCCGGT 59.382 50.000 7.03 0.00 0.00 5.28
84 85 1.017387 GTTTAGATCTTGGCAGCCGG 58.983 55.000 7.03 0.00 0.00 6.13
85 86 1.737838 TGTTTAGATCTTGGCAGCCG 58.262 50.000 7.03 0.00 0.00 5.52
86 87 6.881065 TCATATATGTTTAGATCTTGGCAGCC 59.119 38.462 12.42 3.66 0.00 4.85
87 88 7.912056 TCATATATGTTTAGATCTTGGCAGC 57.088 36.000 12.42 0.00 0.00 5.25
115 116 0.179100 AGAATCGGTGTCGCCAGATG 60.179 55.000 2.76 0.00 36.97 2.90
128 129 1.002366 CGAAGGCCTTGTGAGAATCG 58.998 55.000 26.25 14.20 38.61 3.34
129 130 0.729690 GCGAAGGCCTTGTGAGAATC 59.270 55.000 26.25 4.47 0.00 2.52
148 149 3.978718 TGACATCTGATCTAGCGTCAG 57.021 47.619 15.09 15.09 43.46 3.51
152 153 4.236147 CCTTGATGACATCTGATCTAGCG 58.764 47.826 16.25 0.00 0.00 4.26
155 156 6.062095 TCGTACCTTGATGACATCTGATCTA 58.938 40.000 16.25 0.00 0.00 1.98
171 172 0.531200 CTTCGGCCTCTTCGTACCTT 59.469 55.000 0.00 0.00 0.00 3.50
177 178 1.139947 GGTCTCTTCGGCCTCTTCG 59.860 63.158 0.00 0.00 0.00 3.79
179 180 2.233305 TAAGGTCTCTTCGGCCTCTT 57.767 50.000 0.00 0.00 34.59 2.85
188 189 8.258007 TGTCGTCATATTTGAATAAGGTCTCTT 58.742 33.333 0.00 0.00 33.71 2.85
214 215 0.874607 GGCGGCATCGACGAGTTAAT 60.875 55.000 3.07 0.00 35.20 1.40
224 225 0.817634 TTATTTCCCTGGCGGCATCG 60.818 55.000 13.85 5.51 39.81 3.84
228 229 0.174845 GGTTTTATTTCCCTGGCGGC 59.825 55.000 0.00 0.00 0.00 6.53
242 243 9.431887 GTTTCTTTTGTCTTTTCCTTAGGTTTT 57.568 29.630 0.00 0.00 0.00 2.43
296 297 1.078356 CTCCTCTCCACGGTCTCGA 60.078 63.158 0.00 0.00 40.11 4.04
298 299 1.755008 CCCTCCTCTCCACGGTCTC 60.755 68.421 0.00 0.00 0.00 3.36
322 323 0.109272 TCACTTCACGCCGTCATCTC 60.109 55.000 0.00 0.00 0.00 2.75
324 325 0.716108 CTTCACTTCACGCCGTCATC 59.284 55.000 0.00 0.00 0.00 2.92
328 329 0.597637 CTCACTTCACTTCACGCCGT 60.598 55.000 0.00 0.00 0.00 5.68
337 338 3.456277 ACCAAGTTTCTCCTCACTTCACT 59.544 43.478 0.00 0.00 30.48 3.41
344 345 1.593196 CGCAACCAAGTTTCTCCTCA 58.407 50.000 0.00 0.00 0.00 3.86
345 346 0.875059 CCGCAACCAAGTTTCTCCTC 59.125 55.000 0.00 0.00 0.00 3.71
346 347 1.172812 GCCGCAACCAAGTTTCTCCT 61.173 55.000 0.00 0.00 0.00 3.69
347 348 1.285950 GCCGCAACCAAGTTTCTCC 59.714 57.895 0.00 0.00 0.00 3.71
348 349 0.040067 CTGCCGCAACCAAGTTTCTC 60.040 55.000 0.00 0.00 0.00 2.87
350 351 1.661509 GCTGCCGCAACCAAGTTTC 60.662 57.895 0.00 0.00 35.78 2.78
351 352 0.821711 TAGCTGCCGCAACCAAGTTT 60.822 50.000 2.05 0.00 39.10 2.66
352 353 1.228124 TAGCTGCCGCAACCAAGTT 60.228 52.632 2.05 0.00 39.10 2.66
353 354 1.672356 CTAGCTGCCGCAACCAAGT 60.672 57.895 2.05 0.00 39.10 3.16
354 355 2.401766 CCTAGCTGCCGCAACCAAG 61.402 63.158 2.05 0.00 39.10 3.61
355 356 2.359850 CCTAGCTGCCGCAACCAA 60.360 61.111 2.05 0.00 39.10 3.67
356 357 4.408821 CCCTAGCTGCCGCAACCA 62.409 66.667 2.05 0.00 39.10 3.67
357 358 3.920093 AACCCTAGCTGCCGCAACC 62.920 63.158 2.05 0.00 39.10 3.77
358 359 2.359975 AACCCTAGCTGCCGCAAC 60.360 61.111 2.05 0.00 39.10 4.17
359 360 2.359850 CAACCCTAGCTGCCGCAA 60.360 61.111 2.05 0.00 39.10 4.85
360 361 4.408821 CCAACCCTAGCTGCCGCA 62.409 66.667 2.05 0.00 39.10 5.69
377 378 3.434940 ACTATTGTCAACACCCCTTCC 57.565 47.619 0.00 0.00 0.00 3.46
412 413 9.679661 TGACCAAATCTTATATGCAGACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
413 414 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
414 415 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
415 416 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
416 417 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
417 418 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
418 419 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
419 420 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
420 421 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
421 422 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
422 423 9.573133 GGTTTGACTTTGACCAAATCTTATATG 57.427 33.333 0.00 0.00 35.14 1.78
423 424 9.533831 AGGTTTGACTTTGACCAAATCTTATAT 57.466 29.630 0.00 0.00 39.83 0.86
424 425 8.934023 AGGTTTGACTTTGACCAAATCTTATA 57.066 30.769 0.00 0.00 39.83 0.98
425 426 7.839680 AGGTTTGACTTTGACCAAATCTTAT 57.160 32.000 0.00 0.00 39.83 1.73
426 427 7.123547 ACAAGGTTTGACTTTGACCAAATCTTA 59.876 33.333 11.49 0.00 46.16 2.10
427 428 6.544928 AAGGTTTGACTTTGACCAAATCTT 57.455 33.333 7.34 7.34 44.34 2.40
428 429 5.422012 ACAAGGTTTGACTTTGACCAAATCT 59.578 36.000 9.49 0.00 43.31 2.40
429 430 5.660460 ACAAGGTTTGACTTTGACCAAATC 58.340 37.500 9.49 0.00 37.36 2.17
430 431 5.675684 ACAAGGTTTGACTTTGACCAAAT 57.324 34.783 9.49 0.00 37.36 2.32
431 432 5.476091 AACAAGGTTTGACTTTGACCAAA 57.524 34.783 9.49 0.00 37.36 3.28
432 433 6.209788 AGTTAACAAGGTTTGACTTTGACCAA 59.790 34.615 8.61 0.00 37.36 3.67
433 434 5.712917 AGTTAACAAGGTTTGACTTTGACCA 59.287 36.000 8.61 0.00 37.36 4.02
434 435 6.203808 AGTTAACAAGGTTTGACTTTGACC 57.796 37.500 8.61 0.00 37.36 4.02
442 443 8.570068 ACTTAGTCAAAGTTAACAAGGTTTGA 57.430 30.769 13.70 13.70 46.61 2.69
540 541 9.148879 ACATCTAAGACACTAAAGCTATATGGT 57.851 33.333 0.00 0.00 0.00 3.55
541 542 9.988815 AACATCTAAGACACTAAAGCTATATGG 57.011 33.333 0.00 0.00 0.00 2.74
605 606 9.745323 GCATATAAAATTTGCTCAAAGTCAAAC 57.255 29.630 0.00 0.00 35.34 2.93
606 607 9.486497 TGCATATAAAATTTGCTCAAAGTCAAA 57.514 25.926 0.00 0.00 37.96 2.69
607 608 9.142515 CTGCATATAAAATTTGCTCAAAGTCAA 57.857 29.630 0.00 0.00 37.96 3.18
608 609 8.522003 TCTGCATATAAAATTTGCTCAAAGTCA 58.478 29.630 0.00 0.00 37.96 3.41
609 610 8.801913 GTCTGCATATAAAATTTGCTCAAAGTC 58.198 33.333 0.00 0.00 37.96 3.01
610 611 8.526147 AGTCTGCATATAAAATTTGCTCAAAGT 58.474 29.630 0.00 0.00 37.96 2.66
611 612 8.922058 AGTCTGCATATAAAATTTGCTCAAAG 57.078 30.769 0.00 0.00 37.96 2.77
626 627 8.636213 CCCTTCATTTCATTTTAGTCTGCATAT 58.364 33.333 0.00 0.00 0.00 1.78
627 628 7.833682 TCCCTTCATTTCATTTTAGTCTGCATA 59.166 33.333 0.00 0.00 0.00 3.14
628 629 6.664816 TCCCTTCATTTCATTTTAGTCTGCAT 59.335 34.615 0.00 0.00 0.00 3.96
629 630 6.009589 TCCCTTCATTTCATTTTAGTCTGCA 58.990 36.000 0.00 0.00 0.00 4.41
630 631 6.151817 ACTCCCTTCATTTCATTTTAGTCTGC 59.848 38.462 0.00 0.00 0.00 4.26
631 632 7.693969 ACTCCCTTCATTTCATTTTAGTCTG 57.306 36.000 0.00 0.00 0.00 3.51
636 637 9.693739 TGCTTATACTCCCTTCATTTCATTTTA 57.306 29.630 0.00 0.00 0.00 1.52
637 638 8.593945 TGCTTATACTCCCTTCATTTCATTTT 57.406 30.769 0.00 0.00 0.00 1.82
638 639 8.593945 TTGCTTATACTCCCTTCATTTCATTT 57.406 30.769 0.00 0.00 0.00 2.32
639 640 8.773033 ATTGCTTATACTCCCTTCATTTCATT 57.227 30.769 0.00 0.00 0.00 2.57
640 641 9.866655 TTATTGCTTATACTCCCTTCATTTCAT 57.133 29.630 0.00 0.00 0.00 2.57
641 642 9.693739 TTTATTGCTTATACTCCCTTCATTTCA 57.306 29.630 0.00 0.00 0.00 2.69
668 669 6.894339 TCACACATGAGTCAGTTTACTAGA 57.106 37.500 0.00 0.00 0.00 2.43
669 670 8.539770 AATTCACACATGAGTCAGTTTACTAG 57.460 34.615 0.00 0.00 35.83 2.57
670 671 9.990360 TTAATTCACACATGAGTCAGTTTACTA 57.010 29.630 0.00 0.00 35.83 1.82
671 672 8.902540 TTAATTCACACATGAGTCAGTTTACT 57.097 30.769 0.00 0.00 35.83 2.24
702 709 5.757099 AAACTTCTCCGGGAGATTTTCTA 57.243 39.130 26.54 10.36 38.56 2.10
703 710 4.642466 AAACTTCTCCGGGAGATTTTCT 57.358 40.909 26.54 8.67 38.56 2.52
709 716 2.224450 GGACAAAAACTTCTCCGGGAGA 60.224 50.000 22.70 22.70 36.86 3.71
710 717 2.152016 GGACAAAAACTTCTCCGGGAG 58.848 52.381 18.25 18.25 0.00 4.30
722 729 0.472471 AGGACCGAGCAGGACAAAAA 59.528 50.000 5.19 0.00 45.00 1.94
724 731 1.371183 CAGGACCGAGCAGGACAAA 59.629 57.895 5.19 0.00 45.00 2.83
749 759 0.888736 GGCAATTTTGGTTGGCCACC 60.889 55.000 3.88 11.51 46.01 4.61
817 835 2.623502 GGCCAGGAAGGTGACTAGTCTA 60.624 54.545 23.01 7.59 42.68 2.59
824 842 2.671682 GGAGGCCAGGAAGGTGAC 59.328 66.667 5.01 0.00 40.61 3.67
985 1021 3.401033 TGTCATTTCTTCTGCTTCGGA 57.599 42.857 0.00 0.00 0.00 4.55
996 1044 2.420687 GGCGGAGGAGATTGTCATTTCT 60.421 50.000 0.00 0.00 0.00 2.52
1003 1051 1.002274 AGAGGGCGGAGGAGATTGT 59.998 57.895 0.00 0.00 0.00 2.71
1005 1053 1.458588 GGAGAGGGCGGAGGAGATT 60.459 63.158 0.00 0.00 0.00 2.40
1024 1072 1.141881 GCTTGCGATCGGAGAGGAA 59.858 57.895 18.30 0.00 43.63 3.36
1025 1073 2.808315 GCTTGCGATCGGAGAGGA 59.192 61.111 18.30 0.00 43.63 3.71
1026 1074 2.656651 CGCTTGCGATCGGAGAGG 60.657 66.667 18.30 9.35 43.63 3.69
1027 1075 3.326210 GCGCTTGCGATCGGAGAG 61.326 66.667 19.55 14.57 43.63 3.20
1028 1076 4.873129 GGCGCTTGCGATCGGAGA 62.873 66.667 19.55 4.36 40.15 3.71
1258 1309 4.572571 AGTTTGGGGCGGCGTTGA 62.573 61.111 9.37 0.00 0.00 3.18
1352 1403 2.763710 TGCTGCTCCCGCCAGATA 60.764 61.111 0.00 0.00 34.43 1.98
1399 1450 2.029666 GTCTGCAGTGGCGTCAGT 59.970 61.111 14.67 0.00 45.35 3.41
1481 1532 0.790207 CTTTGTGTCGACCGATGTGG 59.210 55.000 14.12 0.00 46.41 4.17
1528 1579 1.611851 CTCCCCACTCTGCACCTCT 60.612 63.158 0.00 0.00 0.00 3.69
1533 1584 1.610673 GACTCCTCCCCACTCTGCA 60.611 63.158 0.00 0.00 0.00 4.41
1555 1606 3.787001 CTTCTCCTCCCCGCCACC 61.787 72.222 0.00 0.00 0.00 4.61
1556 1607 4.475135 GCTTCTCCTCCCCGCCAC 62.475 72.222 0.00 0.00 0.00 5.01
1931 2048 7.919621 ACTAATACTACGTTGTGGAATAAGAGC 59.080 37.037 13.03 0.00 0.00 4.09
1971 2088 8.985315 TTAATCAGAGCATAAGATCACCAATT 57.015 30.769 0.00 0.00 30.99 2.32
1975 2092 7.887996 CTCTTAATCAGAGCATAAGATCACC 57.112 40.000 0.00 0.00 42.96 4.02
1988 2105 5.246203 AGCACAACACTACCTCTTAATCAGA 59.754 40.000 0.00 0.00 0.00 3.27
1990 2107 5.221641 ACAGCACAACACTACCTCTTAATCA 60.222 40.000 0.00 0.00 0.00 2.57
1991 2108 5.120830 CACAGCACAACACTACCTCTTAATC 59.879 44.000 0.00 0.00 0.00 1.75
1992 2109 4.997395 CACAGCACAACACTACCTCTTAAT 59.003 41.667 0.00 0.00 0.00 1.40
1994 2111 3.386726 ACACAGCACAACACTACCTCTTA 59.613 43.478 0.00 0.00 0.00 2.10
1995 2112 2.170607 ACACAGCACAACACTACCTCTT 59.829 45.455 0.00 0.00 0.00 2.85
2034 2151 8.349245 CAAATATGAACATTCCGCCTTACAATA 58.651 33.333 0.00 0.00 0.00 1.90
2052 2169 4.096231 CGTTTGGAGGATGTGCAAATATGA 59.904 41.667 0.00 0.00 46.80 2.15
2075 2192 4.207891 TCCCAACAGAGTTCTCTATTGC 57.792 45.455 13.40 0.00 0.00 3.56
2084 2201 3.434940 GGGTACAATCCCAACAGAGTT 57.565 47.619 0.00 0.00 46.30 3.01
2137 2254 3.014623 CCCTTCCAATCCGAAACTAACC 58.985 50.000 0.00 0.00 0.00 2.85
2147 2264 4.790718 AGTATTACCACCCTTCCAATCC 57.209 45.455 0.00 0.00 0.00 3.01
2149 2266 7.460214 TCATAAGTATTACCACCCTTCCAAT 57.540 36.000 0.00 0.00 30.46 3.16
2240 2369 6.564125 CGTCAGTATAAAAATGCCCGAATCTC 60.564 42.308 0.00 0.00 0.00 2.75
2241 2370 5.236478 CGTCAGTATAAAAATGCCCGAATCT 59.764 40.000 0.00 0.00 0.00 2.40
2242 2371 5.007332 ACGTCAGTATAAAAATGCCCGAATC 59.993 40.000 0.00 0.00 0.00 2.52
2243 2372 4.879545 ACGTCAGTATAAAAATGCCCGAAT 59.120 37.500 0.00 0.00 0.00 3.34
2244 2373 4.255301 ACGTCAGTATAAAAATGCCCGAA 58.745 39.130 0.00 0.00 0.00 4.30
2245 2374 3.864243 ACGTCAGTATAAAAATGCCCGA 58.136 40.909 0.00 0.00 0.00 5.14
2246 2375 4.807304 AGTACGTCAGTATAAAAATGCCCG 59.193 41.667 0.00 0.00 35.01 6.13
2247 2376 6.673154 AAGTACGTCAGTATAAAAATGCCC 57.327 37.500 0.00 0.00 35.01 5.36
2248 2377 7.517893 GCCTAAGTACGTCAGTATAAAAATGCC 60.518 40.741 0.00 0.00 35.01 4.40
2249 2378 7.010738 TGCCTAAGTACGTCAGTATAAAAATGC 59.989 37.037 0.00 0.00 35.01 3.56
2250 2379 8.325997 GTGCCTAAGTACGTCAGTATAAAAATG 58.674 37.037 0.00 0.00 35.01 2.32
2251 2380 8.255905 AGTGCCTAAGTACGTCAGTATAAAAAT 58.744 33.333 0.00 0.00 35.01 1.82
2252 2381 7.605449 AGTGCCTAAGTACGTCAGTATAAAAA 58.395 34.615 0.00 0.00 35.01 1.94
2253 2382 7.161773 AGTGCCTAAGTACGTCAGTATAAAA 57.838 36.000 0.00 0.00 35.01 1.52
2254 2383 6.764308 AGTGCCTAAGTACGTCAGTATAAA 57.236 37.500 0.00 0.00 35.01 1.40
2255 2384 7.864108 TTAGTGCCTAAGTACGTCAGTATAA 57.136 36.000 0.00 0.00 35.01 0.98
2260 2389 5.892568 AGAATTAGTGCCTAAGTACGTCAG 58.107 41.667 0.00 0.00 33.18 3.51
2262 2391 6.562518 AGAAGAATTAGTGCCTAAGTACGTC 58.437 40.000 0.00 0.00 33.18 4.34
2278 2407 7.042797 TGCAAGCTTGAACTTTAGAAGAATT 57.957 32.000 30.39 0.00 0.00 2.17
2288 2417 2.543641 GCAACTTGCAAGCTTGAACTT 58.456 42.857 30.39 10.53 44.26 2.66
2289 2418 2.214387 GCAACTTGCAAGCTTGAACT 57.786 45.000 30.39 4.16 44.26 3.01
2299 2428 3.127548 GCTCTAGCTTATTGCAACTTGCA 59.872 43.478 12.59 12.59 44.58 4.08
2300 2429 3.689346 GCTCTAGCTTATTGCAACTTGC 58.311 45.455 0.00 6.82 45.94 4.01
2301 2430 3.372206 ACGCTCTAGCTTATTGCAACTTG 59.628 43.478 0.00 0.00 45.94 3.16
2302 2431 3.372206 CACGCTCTAGCTTATTGCAACTT 59.628 43.478 0.00 0.00 45.94 2.66
2303 2432 2.932614 CACGCTCTAGCTTATTGCAACT 59.067 45.455 0.00 0.00 45.94 3.16
2304 2433 2.673368 ACACGCTCTAGCTTATTGCAAC 59.327 45.455 0.00 0.00 45.94 4.17
2327 2456 7.660112 TGACAAGGTTAGAAGTCGTGTTATAA 58.340 34.615 0.00 0.00 33.83 0.98
2335 2471 4.744570 TGCTATGACAAGGTTAGAAGTCG 58.255 43.478 0.00 0.00 33.83 4.18
2540 2912 3.648009 TCAAAAGCAAATAAAGGGCACG 58.352 40.909 0.00 0.00 0.00 5.34
2637 3010 2.846193 ACGGTGTGCAGTTGTCTTAAT 58.154 42.857 0.00 0.00 0.00 1.40
2645 3018 2.319136 TCAACTTACGGTGTGCAGTT 57.681 45.000 0.00 0.00 0.00 3.16
2663 3036 5.368256 AGAAGCATGTCACTGAAACAATC 57.632 39.130 0.00 0.00 0.00 2.67
2692 3065 5.068198 AGGAATGCACCATGTATTTGATGTC 59.932 40.000 0.00 0.00 32.86 3.06
2838 3851 3.509442 TCTTGCATGAGTTCCCCATTTT 58.491 40.909 0.00 0.00 0.00 1.82
3266 4280 5.781210 TTTTACACAGGAATTGCATGACA 57.219 34.783 0.00 0.00 31.50 3.58
3268 4282 6.154203 TGTTTTTACACAGGAATTGCATGA 57.846 33.333 0.00 0.00 31.50 3.07
3335 4349 8.822805 TCTAACATGTTTGTAGAGGGAGTATTT 58.177 33.333 17.78 0.00 34.06 1.40
3340 4354 9.265901 CATATTCTAACATGTTTGTAGAGGGAG 57.734 37.037 17.78 4.65 34.06 4.30
3341 4355 8.768397 ACATATTCTAACATGTTTGTAGAGGGA 58.232 33.333 17.78 0.00 34.06 4.20
3342 4356 8.830580 CACATATTCTAACATGTTTGTAGAGGG 58.169 37.037 17.78 5.50 34.06 4.30
3343 4357 9.383519 ACACATATTCTAACATGTTTGTAGAGG 57.616 33.333 17.78 10.08 34.06 3.69
3345 4359 9.936759 TGACACATATTCTAACATGTTTGTAGA 57.063 29.630 17.78 10.88 34.06 2.59
3373 4387 9.495382 AGTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
3379 4393 9.939424 ACTACTAGTCCCTCTGTAAAGAAATAT 57.061 33.333 0.00 0.00 0.00 1.28
3380 4394 9.406113 GACTACTAGTCCCTCTGTAAAGAAATA 57.594 37.037 0.00 0.00 39.28 1.40
3381 4395 7.894364 TGACTACTAGTCCCTCTGTAAAGAAAT 59.106 37.037 12.79 0.00 44.44 2.17
3382 4396 7.236529 TGACTACTAGTCCCTCTGTAAAGAAA 58.763 38.462 12.79 0.00 44.44 2.52
3383 4397 6.787170 TGACTACTAGTCCCTCTGTAAAGAA 58.213 40.000 12.79 0.00 44.44 2.52
3384 4398 6.384342 TGACTACTAGTCCCTCTGTAAAGA 57.616 41.667 12.79 0.00 44.44 2.52
3385 4399 7.648039 ATTGACTACTAGTCCCTCTGTAAAG 57.352 40.000 12.79 0.00 44.44 1.85
3386 4400 8.111545 TGTATTGACTACTAGTCCCTCTGTAAA 58.888 37.037 12.79 0.05 44.44 2.01
3387 4401 7.555554 GTGTATTGACTACTAGTCCCTCTGTAA 59.444 40.741 12.79 0.68 44.44 2.41
3388 4402 7.052873 GTGTATTGACTACTAGTCCCTCTGTA 58.947 42.308 12.79 0.00 44.44 2.74
3389 4403 5.887035 GTGTATTGACTACTAGTCCCTCTGT 59.113 44.000 12.79 0.00 44.44 3.41
3390 4404 5.886474 TGTGTATTGACTACTAGTCCCTCTG 59.114 44.000 12.79 0.00 44.44 3.35
3391 4405 6.075949 TGTGTATTGACTACTAGTCCCTCT 57.924 41.667 12.79 0.00 44.44 3.69
3392 4406 6.773685 AGATGTGTATTGACTACTAGTCCCTC 59.226 42.308 12.79 0.00 44.44 4.30
3393 4407 6.674573 AGATGTGTATTGACTACTAGTCCCT 58.325 40.000 12.79 3.93 44.44 4.20
3394 4408 6.963083 AGATGTGTATTGACTACTAGTCCC 57.037 41.667 12.79 1.01 44.44 4.46
3395 4409 9.900710 CATAAGATGTGTATTGACTACTAGTCC 57.099 37.037 12.79 0.00 44.44 3.85
3562 4576 4.019591 TGATGCTCCTGGAATCATATGGAG 60.020 45.833 6.92 0.00 45.05 3.86
3606 4620 6.460953 CCAAGCTACCAACTAAAGAAAGCAAA 60.461 38.462 0.00 0.00 0.00 3.68
3794 4808 8.715998 CAATCATTATGACGGGAAAAGATAGAG 58.284 37.037 0.00 0.00 0.00 2.43
4002 5039 9.362539 GATTCATGTTCTTAGTTAGACGGTAAA 57.637 33.333 0.00 0.00 30.90 2.01
4039 5129 2.014068 GCTACCTCATTGCCTGTCCAC 61.014 57.143 0.00 0.00 0.00 4.02
4047 5137 2.005451 CTGACACAGCTACCTCATTGC 58.995 52.381 0.00 0.00 0.00 3.56
4198 5288 3.873910 ACCTTAGTGGAAATGATGTCCG 58.126 45.455 0.00 0.00 38.06 4.79
4265 5355 0.112412 ACAGGGTTGTTGGCCTAAGG 59.888 55.000 3.32 0.00 32.28 2.69
4266 5356 1.073923 AGACAGGGTTGTTGGCCTAAG 59.926 52.381 3.32 0.00 37.76 2.18
4301 5391 4.882671 AGTTGATCACCGCAAATCATAC 57.117 40.909 0.00 0.00 32.24 2.39
4311 5401 5.551760 AATTAGCAAGAAGTTGATCACCG 57.448 39.130 0.00 0.00 35.46 4.94
4683 5865 4.066578 TGCCTATATCTCCATAGCCAGT 57.933 45.455 0.00 0.00 0.00 4.00
5007 6189 5.811399 TTCATGTCCATAACATTCCGAAC 57.189 39.130 0.00 0.00 46.73 3.95
5191 6373 5.305902 TGATAGGGTGACAACTCTTGTAACA 59.694 40.000 5.21 0.00 45.21 2.41
5285 6467 2.162608 CGTAGATAGGATCAAGGCCGAG 59.837 54.545 0.00 0.00 0.00 4.63
5684 6870 3.710722 ACCTGGAAGAGCTGGGCG 61.711 66.667 0.00 0.00 34.07 6.13
5705 6891 2.000048 ACTAAATGCCCCTCCTGGAAA 59.000 47.619 0.00 0.00 35.39 3.13
5723 6909 0.179029 CAACCTTTCACGGGTCCACT 60.179 55.000 0.00 0.00 35.83 4.00
5762 6948 1.037493 CGGCTAGTGGCACCTATACA 58.963 55.000 15.27 0.00 44.01 2.29
5836 7022 3.768757 CCAATACCTCAGGATTTGGCAAA 59.231 43.478 16.01 16.01 33.97 3.68
5845 7031 2.439507 GAGATTGGCCAATACCTCAGGA 59.560 50.000 30.73 0.00 0.00 3.86
6227 7413 2.652530 GTCAACTGGCGACGGGTA 59.347 61.111 0.04 0.00 42.76 3.69
6452 7638 1.203994 CAACTACAACCCCTCGTCGAT 59.796 52.381 0.00 0.00 0.00 3.59
6695 7882 2.863853 CGCCGATGACGTGATGCTG 61.864 63.158 0.00 0.00 37.88 4.41
6725 7912 3.822192 CGACGAGACATCCCGGCA 61.822 66.667 0.00 0.00 32.40 5.69
6830 8017 2.727392 CCAAGGCGACCCCGTATCA 61.727 63.158 0.00 0.00 39.21 2.15
6991 8178 1.555075 CCTTCGACTCCCTTTCATGGA 59.445 52.381 0.00 0.00 0.00 3.41
7175 8362 2.760634 TCTTTGCGAAGGTGCTATCA 57.239 45.000 13.87 0.00 33.56 2.15
7199 8386 9.573166 AGAAGCACTAAATATATTAATGTGGCA 57.427 29.630 18.56 0.00 0.00 4.92
7208 8395 9.007901 GGATCAAGCAGAAGCACTAAATATATT 57.992 33.333 0.00 0.00 45.49 1.28
7209 8396 7.609532 GGGATCAAGCAGAAGCACTAAATATAT 59.390 37.037 0.00 0.00 45.49 0.86
7210 8397 6.936900 GGGATCAAGCAGAAGCACTAAATATA 59.063 38.462 0.00 0.00 45.49 0.86
7211 8398 5.767168 GGGATCAAGCAGAAGCACTAAATAT 59.233 40.000 0.00 0.00 45.49 1.28
7212 8399 5.126067 GGGATCAAGCAGAAGCACTAAATA 58.874 41.667 0.00 0.00 45.49 1.40
7213 8400 3.950395 GGGATCAAGCAGAAGCACTAAAT 59.050 43.478 0.00 0.00 45.49 1.40
7214 8401 3.347216 GGGATCAAGCAGAAGCACTAAA 58.653 45.455 0.00 0.00 45.49 1.85
7215 8402 2.677902 CGGGATCAAGCAGAAGCACTAA 60.678 50.000 0.00 0.00 45.49 2.24
7216 8403 1.134699 CGGGATCAAGCAGAAGCACTA 60.135 52.381 0.00 0.00 45.49 2.74
7217 8404 0.392193 CGGGATCAAGCAGAAGCACT 60.392 55.000 0.00 0.00 45.49 4.40
7298 8485 6.714810 AGTGCCTTAACTGTGTTCATCAATAA 59.285 34.615 0.00 0.00 0.00 1.40
7308 8495 2.290323 GGATCCAGTGCCTTAACTGTGT 60.290 50.000 6.95 0.00 45.08 3.72
7327 8514 7.038302 ACTCAATAAGGAATGACAAGTACTGGA 60.038 37.037 3.64 0.00 0.00 3.86
7403 8590 8.879227 ACCATTTTTCCTAAATTCATTCCTGAA 58.121 29.630 0.00 0.00 45.15 3.02
7634 8827 5.298527 TGATGCTGCAAATCTGGAATAAGAG 59.701 40.000 6.36 0.00 0.00 2.85
7709 8902 3.057596 TGAAAATGATCGGCAAAGTGTCC 60.058 43.478 0.00 0.00 0.00 4.02
7721 8914 7.330208 CCAATCAAACCTCTGTTGAAAATGATC 59.670 37.037 0.00 0.00 34.13 2.92
7790 8983 5.695816 GCTCATGTGAAGAAGATCATAGGTC 59.304 44.000 0.00 0.00 0.00 3.85
7833 9026 5.755849 AGGCAAGCTATTGTACCTATTTGT 58.244 37.500 0.00 0.00 38.76 2.83
7846 9039 3.988976 TCAAGACTCAAGGCAAGCTAT 57.011 42.857 0.00 0.00 0.00 2.97
7887 9080 9.261180 GCACTAGCATACAAGAGAATGTTATAA 57.739 33.333 0.00 0.00 41.58 0.98
7888 9081 8.818141 GCACTAGCATACAAGAGAATGTTATA 57.182 34.615 0.00 0.00 41.58 0.98
7889 9082 7.721286 GCACTAGCATACAAGAGAATGTTAT 57.279 36.000 0.00 0.00 41.58 1.89
7906 9099 3.549625 GGCATAAGATTGCTTGCACTAGC 60.550 47.826 3.32 3.32 42.38 3.42
7907 9100 3.881688 AGGCATAAGATTGCTTGCACTAG 59.118 43.478 0.00 0.00 42.38 2.57
7909 9102 2.731572 AGGCATAAGATTGCTTGCACT 58.268 42.857 0.00 0.00 42.38 4.40
8024 9222 6.095440 CACGGTCCATTTTTCTAATCATTCCT 59.905 38.462 0.00 0.00 0.00 3.36
8033 9231 4.449743 CGAAGAACACGGTCCATTTTTCTA 59.550 41.667 0.00 0.00 0.00 2.10
8224 9425 2.440409 TCATCTGAAGGAAAAGCAGGC 58.560 47.619 0.00 0.00 0.00 4.85
8293 9494 1.180029 CATCCAAAGGACAAGCTGGG 58.820 55.000 0.00 0.00 32.98 4.45
8354 9555 3.698539 TCTGTGCCACACAAAGAATCAAA 59.301 39.130 0.00 0.00 44.08 2.69
8390 9591 5.449553 GAGAAAGATCATTTACATGGGGGT 58.550 41.667 0.00 0.00 0.00 4.95
8403 9604 4.568956 TGCAGACAAATCGAGAAAGATCA 58.431 39.130 0.00 0.00 0.00 2.92
8421 9622 2.417933 GGCAAGATCACACTAACTGCAG 59.582 50.000 13.48 13.48 0.00 4.41
8433 9634 4.039488 ACAGCAAAATCAAAGGCAAGATCA 59.961 37.500 0.00 0.00 0.00 2.92
8510 9711 9.810545 GTCTAGTTTAGTGATCTAAATGCTCTT 57.189 33.333 0.00 0.00 44.52 2.85
8511 9712 8.972127 TGTCTAGTTTAGTGATCTAAATGCTCT 58.028 33.333 0.00 0.83 44.52 4.09
8512 9713 9.587772 TTGTCTAGTTTAGTGATCTAAATGCTC 57.412 33.333 0.00 0.00 44.52 4.26
8513 9714 9.372369 GTTGTCTAGTTTAGTGATCTAAATGCT 57.628 33.333 0.00 1.65 44.52 3.79
8514 9715 9.372369 AGTTGTCTAGTTTAGTGATCTAAATGC 57.628 33.333 0.00 0.00 44.52 3.56
8550 9751 9.798994 CTCCGTCTGTAAACTAATATAAGTGTT 57.201 33.333 0.00 0.00 0.00 3.32
8551 9752 8.964772 ACTCCGTCTGTAAACTAATATAAGTGT 58.035 33.333 0.00 0.00 0.00 3.55
8557 9758 9.844257 AGTAGTACTCCGTCTGTAAACTAATAT 57.156 33.333 0.00 0.00 0.00 1.28
8558 9759 9.102757 CAGTAGTACTCCGTCTGTAAACTAATA 57.897 37.037 0.00 0.00 0.00 0.98
8559 9760 7.609532 ACAGTAGTACTCCGTCTGTAAACTAAT 59.390 37.037 16.01 0.00 37.55 1.73
8560 9761 6.936900 ACAGTAGTACTCCGTCTGTAAACTAA 59.063 38.462 16.01 0.00 37.55 2.24
8561 9762 6.467677 ACAGTAGTACTCCGTCTGTAAACTA 58.532 40.000 16.01 0.00 37.55 2.24
8562 9763 5.312079 ACAGTAGTACTCCGTCTGTAAACT 58.688 41.667 16.01 2.54 37.55 2.66
8563 9764 5.619625 ACAGTAGTACTCCGTCTGTAAAC 57.380 43.478 16.01 0.54 37.55 2.01
8564 9765 5.352569 GCTACAGTAGTACTCCGTCTGTAAA 59.647 44.000 20.15 9.82 39.82 2.01
8565 9766 4.872691 GCTACAGTAGTACTCCGTCTGTAA 59.127 45.833 20.15 11.31 39.82 2.41
8566 9767 4.081476 TGCTACAGTAGTACTCCGTCTGTA 60.081 45.833 19.33 19.33 39.54 2.74
8567 9768 3.269178 GCTACAGTAGTACTCCGTCTGT 58.731 50.000 19.22 19.22 41.32 3.41
8568 9769 3.268330 TGCTACAGTAGTACTCCGTCTG 58.732 50.000 9.42 7.15 0.00 3.51
8569 9770 3.623906 TGCTACAGTAGTACTCCGTCT 57.376 47.619 9.42 0.00 0.00 4.18
8570 9771 4.691860 TTTGCTACAGTAGTACTCCGTC 57.308 45.455 9.42 0.00 0.00 4.79
8571 9772 5.884792 ACTATTTGCTACAGTAGTACTCCGT 59.115 40.000 9.42 0.00 0.00 4.69
8572 9773 6.374565 ACTATTTGCTACAGTAGTACTCCG 57.625 41.667 9.42 0.00 0.00 4.63
8573 9774 9.733219 CTAAACTATTTGCTACAGTAGTACTCC 57.267 37.037 9.42 0.00 0.00 3.85
8666 9867 8.439286 GGACGAAATAAAATTTATTGCTGCAAA 58.561 29.630 20.06 3.14 0.00 3.68
8669 9870 7.755582 AGGACGAAATAAAATTTATTGCTGC 57.244 32.000 11.26 5.79 0.00 5.25
8859 10077 3.303351 CCTCAAGTAGGCAATCCCATT 57.697 47.619 0.00 0.00 38.97 3.16
8972 10202 0.453950 CGTCGTCGGTGGTAGAACAG 60.454 60.000 0.00 0.00 0.00 3.16
8974 10204 1.799121 GCGTCGTCGGTGGTAGAAC 60.799 63.158 3.90 0.00 37.56 3.01
8975 10205 1.968017 AGCGTCGTCGGTGGTAGAA 60.968 57.895 5.87 0.00 46.08 2.10
8976 10206 2.359107 AGCGTCGTCGGTGGTAGA 60.359 61.111 5.87 0.00 46.08 2.59
8983 10213 2.748546 CTTGTTGCAAGCGTCGTCGG 62.749 60.000 0.00 0.00 37.56 4.79
9010 10252 4.285517 AGCAAGAACAGGAATTGAGAGAGA 59.714 41.667 0.00 0.00 0.00 3.10
9065 10307 1.599542 GATACCAGCTTCAATGACGCC 59.400 52.381 8.14 0.00 0.00 5.68
9098 10340 1.610522 GATGGAGGCCAATATGTGCAC 59.389 52.381 10.75 10.75 36.95 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.