Multiple sequence alignment - TraesCS3B01G380000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G380000 chr3B 100.000 2642 0 0 1 2642 597575305 597572664 0.000000e+00 4879.0
1 TraesCS3B01G380000 chr3B 75.228 658 117 29 42 658 816611371 816610719 1.210000e-68 270.0
2 TraesCS3B01G380000 chr3B 83.621 116 14 5 48 159 715947698 715947584 1.290000e-18 104.0
3 TraesCS3B01G380000 chr3B 93.846 65 3 1 2579 2642 51458175 51458111 2.160000e-16 97.1
4 TraesCS3B01G380000 chr3B 97.778 45 1 0 106 150 129879484 129879440 7.840000e-11 78.7
5 TraesCS3B01G380000 chr3A 93.638 1226 46 12 864 2067 596800618 596799403 0.000000e+00 1803.0
6 TraesCS3B01G380000 chr3A 78.137 526 86 14 170 673 739663822 739663304 9.190000e-80 307.0
7 TraesCS3B01G380000 chr3A 79.245 106 22 0 481 586 311341870 311341765 1.010000e-09 75.0
8 TraesCS3B01G380000 chr3D 93.248 1244 31 22 749 1946 454757788 454756552 0.000000e+00 1783.0
9 TraesCS3B01G380000 chr3D 77.316 529 95 10 167 673 607211110 607210585 3.330000e-74 289.0
10 TraesCS3B01G380000 chr3D 81.921 177 11 4 2411 2587 454756068 454755913 2.130000e-26 130.0
11 TraesCS3B01G380000 chr3D 84.874 119 7 5 1953 2065 454756378 454756265 2.780000e-20 110.0
12 TraesCS3B01G380000 chr5D 77.827 681 112 20 6 651 332788596 332787920 4.130000e-103 385.0
13 TraesCS3B01G380000 chr4D 77.315 648 115 19 2 619 432989998 432990643 1.160000e-93 353.0
14 TraesCS3B01G380000 chr4D 77.581 620 100 26 3 586 62302365 62302981 3.260000e-89 339.0
15 TraesCS3B01G380000 chr2B 77.575 602 96 17 1 565 96046415 96047014 7.050000e-86 327.0
16 TraesCS3B01G380000 chr2B 96.552 58 2 0 2585 2642 324603456 324603399 2.160000e-16 97.1
17 TraesCS3B01G380000 chr2B 93.750 64 4 0 2579 2642 427077740 427077803 2.160000e-16 97.1
18 TraesCS3B01G380000 chr2B 94.000 50 3 0 101 150 707866203 707866154 2.820000e-10 76.8
19 TraesCS3B01G380000 chr1A 78.826 477 81 14 213 673 419491354 419490882 1.190000e-78 303.0
20 TraesCS3B01G380000 chr2D 77.095 537 105 12 151 673 403178693 403179225 7.150000e-76 294.0
21 TraesCS3B01G380000 chr7D 76.277 607 101 22 1 569 32707923 32708524 1.550000e-72 283.0
22 TraesCS3B01G380000 chr7D 89.610 77 7 1 75 150 596609665 596609589 2.160000e-16 97.1
23 TraesCS3B01G380000 chr7D 77.632 152 21 12 1 150 453167843 453167983 2.180000e-11 80.5
24 TraesCS3B01G380000 chr6D 79.087 416 69 12 167 569 454577976 454578386 1.210000e-68 270.0
25 TraesCS3B01G380000 chr2A 77.209 430 85 9 151 568 540257917 540258345 3.400000e-59 239.0
26 TraesCS3B01G380000 chrUn 76.309 401 76 7 151 535 28743609 28744006 2.070000e-46 196.0
27 TraesCS3B01G380000 chr6B 93.846 65 3 1 2579 2642 69676923 69676987 2.160000e-16 97.1
28 TraesCS3B01G380000 chr6B 93.750 64 4 0 2579 2642 70543510 70543573 2.160000e-16 97.1
29 TraesCS3B01G380000 chr6B 93.846 65 3 1 2579 2642 285718666 285718730 2.160000e-16 97.1
30 TraesCS3B01G380000 chr6B 93.846 65 3 1 2579 2642 365182544 365182608 2.160000e-16 97.1
31 TraesCS3B01G380000 chr6B 93.846 65 3 1 2579 2642 416002530 416002594 2.160000e-16 97.1
32 TraesCS3B01G380000 chr1B 93.846 65 3 1 2579 2642 171543791 171543855 2.160000e-16 97.1
33 TraesCS3B01G380000 chr5A 75.817 153 32 5 1 150 533951287 533951437 3.650000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G380000 chr3B 597572664 597575305 2641 True 4879.000000 4879 100.000 1 2642 1 chr3B.!!$R3 2641
1 TraesCS3B01G380000 chr3B 816610719 816611371 652 True 270.000000 270 75.228 42 658 1 chr3B.!!$R5 616
2 TraesCS3B01G380000 chr3A 596799403 596800618 1215 True 1803.000000 1803 93.638 864 2067 1 chr3A.!!$R2 1203
3 TraesCS3B01G380000 chr3A 739663304 739663822 518 True 307.000000 307 78.137 170 673 1 chr3A.!!$R3 503
4 TraesCS3B01G380000 chr3D 454755913 454757788 1875 True 674.333333 1783 86.681 749 2587 3 chr3D.!!$R2 1838
5 TraesCS3B01G380000 chr3D 607210585 607211110 525 True 289.000000 289 77.316 167 673 1 chr3D.!!$R1 506
6 TraesCS3B01G380000 chr5D 332787920 332788596 676 True 385.000000 385 77.827 6 651 1 chr5D.!!$R1 645
7 TraesCS3B01G380000 chr4D 432989998 432990643 645 False 353.000000 353 77.315 2 619 1 chr4D.!!$F2 617
8 TraesCS3B01G380000 chr4D 62302365 62302981 616 False 339.000000 339 77.581 3 586 1 chr4D.!!$F1 583
9 TraesCS3B01G380000 chr2B 96046415 96047014 599 False 327.000000 327 77.575 1 565 1 chr2B.!!$F1 564
10 TraesCS3B01G380000 chr2D 403178693 403179225 532 False 294.000000 294 77.095 151 673 1 chr2D.!!$F1 522
11 TraesCS3B01G380000 chr7D 32707923 32708524 601 False 283.000000 283 76.277 1 569 1 chr7D.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 260 0.107214 CCTCCGGCTAAAGCAATCCA 60.107 55.0 0.0 0.0 44.36 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2377 0.037326 CGCACACACACTATCCCTGT 60.037 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.676438 CGCCGTCAACATTTGCATGC 61.676 55.000 11.82 11.82 33.05 4.06
83 85 1.722082 CGAAGCTCGACGAGATGGA 59.278 57.895 28.43 0.00 43.74 3.41
162 185 2.343758 GCTTGCACCGAGGAGACA 59.656 61.111 0.00 0.00 0.00 3.41
164 187 1.668294 CTTGCACCGAGGAGACACT 59.332 57.895 0.00 0.00 0.00 3.55
175 198 1.811359 AGGAGACACTAGCGTACACAC 59.189 52.381 0.00 0.00 0.00 3.82
177 200 1.811359 GAGACACTAGCGTACACACCT 59.189 52.381 0.00 0.00 0.00 4.00
190 214 2.382770 ACACCTGGTGTCTTGCCCA 61.383 57.895 26.28 0.00 43.92 5.36
232 256 1.493854 TTCCCCTCCGGCTAAAGCAA 61.494 55.000 0.00 0.00 44.36 3.91
233 257 1.227383 CCCCTCCGGCTAAAGCAAT 59.773 57.895 0.00 0.00 44.36 3.56
236 260 0.107214 CCTCCGGCTAAAGCAATCCA 60.107 55.000 0.00 0.00 44.36 3.41
250 276 1.488705 AATCCAGGCGGTTCCACTCA 61.489 55.000 0.00 0.00 37.29 3.41
291 317 4.475135 GGGAAGCGAGCCACCCTC 62.475 72.222 16.17 0.00 39.28 4.30
302 328 1.757306 CCACCCTCTGCACTGAAGT 59.243 57.895 0.00 0.00 0.00 3.01
400 439 1.595311 AGTCAAGGGTATCCATGCCA 58.405 50.000 0.00 0.00 33.83 4.92
449 498 7.199078 CGGATGTAGACTAGTTTTACCTTACC 58.801 42.308 13.03 10.42 0.00 2.85
454 503 4.224594 AGACTAGTTTTACCTTACCCCAGC 59.775 45.833 0.00 0.00 0.00 4.85
608 672 2.036604 TCAGTTACCGCATCAGTGTTCA 59.963 45.455 0.00 0.00 0.00 3.18
619 683 2.329267 TCAGTGTTCATGGACTGGTCT 58.671 47.619 5.55 0.00 40.11 3.85
624 688 1.065854 GTTCATGGACTGGTCTCCTGG 60.066 57.143 0.00 0.00 0.00 4.45
637 701 2.124901 CCTGGCCGCGGACAAATA 60.125 61.111 36.97 12.76 29.81 1.40
638 702 1.747367 CCTGGCCGCGGACAAATAA 60.747 57.895 36.97 12.29 29.81 1.40
661 725 3.810579 GCAAATTTGCGGGTCATCA 57.189 47.368 26.15 0.00 45.11 3.07
673 737 2.301296 CGGGTCATCATTAGAGATGCCT 59.699 50.000 13.22 0.00 43.94 4.75
674 738 3.244353 CGGGTCATCATTAGAGATGCCTT 60.244 47.826 13.22 0.00 43.94 4.35
675 739 4.723309 GGGTCATCATTAGAGATGCCTTT 58.277 43.478 13.22 0.00 43.94 3.11
676 740 5.136105 GGGTCATCATTAGAGATGCCTTTT 58.864 41.667 13.22 0.00 43.94 2.27
677 741 5.009410 GGGTCATCATTAGAGATGCCTTTTG 59.991 44.000 13.22 0.00 43.94 2.44
678 742 5.009410 GGTCATCATTAGAGATGCCTTTTGG 59.991 44.000 0.00 0.00 43.94 3.28
679 743 5.824624 GTCATCATTAGAGATGCCTTTTGGA 59.175 40.000 0.00 0.00 43.94 3.53
680 744 6.319658 GTCATCATTAGAGATGCCTTTTGGAA 59.680 38.462 0.00 0.00 43.94 3.53
681 745 7.014038 GTCATCATTAGAGATGCCTTTTGGAAT 59.986 37.037 0.00 0.00 43.94 3.01
682 746 7.562454 TCATCATTAGAGATGCCTTTTGGAATT 59.438 33.333 0.00 0.00 43.94 2.17
683 747 7.722949 TCATTAGAGATGCCTTTTGGAATTT 57.277 32.000 0.00 0.00 38.20 1.82
684 748 7.549839 TCATTAGAGATGCCTTTTGGAATTTG 58.450 34.615 0.00 0.00 38.20 2.32
685 749 7.396907 TCATTAGAGATGCCTTTTGGAATTTGA 59.603 33.333 0.00 0.00 38.20 2.69
686 750 7.537596 TTAGAGATGCCTTTTGGAATTTGAA 57.462 32.000 0.00 0.00 38.20 2.69
687 751 6.034161 AGAGATGCCTTTTGGAATTTGAAG 57.966 37.500 0.00 0.00 38.20 3.02
688 752 5.046807 AGAGATGCCTTTTGGAATTTGAAGG 60.047 40.000 0.00 0.00 38.20 3.46
689 753 4.594491 AGATGCCTTTTGGAATTTGAAGGT 59.406 37.500 0.00 0.00 38.20 3.50
690 754 5.779771 AGATGCCTTTTGGAATTTGAAGGTA 59.220 36.000 0.00 0.00 38.20 3.08
691 755 5.878406 TGCCTTTTGGAATTTGAAGGTAA 57.122 34.783 0.00 0.00 44.07 2.85
692 756 6.240549 TGCCTTTTGGAATTTGAAGGTAAA 57.759 33.333 0.00 0.00 44.07 2.01
693 757 6.287525 TGCCTTTTGGAATTTGAAGGTAAAG 58.712 36.000 0.00 0.00 44.07 1.85
694 758 6.098982 TGCCTTTTGGAATTTGAAGGTAAAGA 59.901 34.615 0.00 0.00 44.07 2.52
695 759 7.161404 GCCTTTTGGAATTTGAAGGTAAAGAT 58.839 34.615 0.00 0.00 44.07 2.40
696 760 7.661437 GCCTTTTGGAATTTGAAGGTAAAGATT 59.339 33.333 0.00 0.00 44.07 2.40
702 766 9.693739 TGGAATTTGAAGGTAAAGATTATAGCA 57.306 29.630 0.00 0.00 0.00 3.49
710 774 9.967346 GAAGGTAAAGATTATAGCAAAATTCCC 57.033 33.333 0.00 0.00 0.00 3.97
711 775 8.478775 AGGTAAAGATTATAGCAAAATTCCCC 57.521 34.615 0.00 0.00 0.00 4.81
712 776 7.509318 AGGTAAAGATTATAGCAAAATTCCCCC 59.491 37.037 0.00 0.00 0.00 5.40
713 777 6.405278 AAAGATTATAGCAAAATTCCCCCG 57.595 37.500 0.00 0.00 0.00 5.73
714 778 3.826729 AGATTATAGCAAAATTCCCCCGC 59.173 43.478 0.00 0.00 0.00 6.13
715 779 2.738587 TATAGCAAAATTCCCCCGCA 57.261 45.000 0.00 0.00 0.00 5.69
716 780 1.859302 ATAGCAAAATTCCCCCGCAA 58.141 45.000 0.00 0.00 0.00 4.85
717 781 1.633774 TAGCAAAATTCCCCCGCAAA 58.366 45.000 0.00 0.00 0.00 3.68
718 782 0.761802 AGCAAAATTCCCCCGCAAAA 59.238 45.000 0.00 0.00 0.00 2.44
719 783 1.141858 AGCAAAATTCCCCCGCAAAAA 59.858 42.857 0.00 0.00 0.00 1.94
781 845 2.246091 TTGGGTGGATTTGGGGATTC 57.754 50.000 0.00 0.00 0.00 2.52
782 846 0.338120 TGGGTGGATTTGGGGATTCC 59.662 55.000 0.00 0.00 0.00 3.01
801 865 6.555360 GGATTCCTCTATACCTCTTTCTTCCA 59.445 42.308 0.00 0.00 0.00 3.53
824 888 1.155424 TTGCGGTTTGGTCGAGTCAC 61.155 55.000 0.00 0.00 0.00 3.67
836 900 4.113354 GGTCGAGTCACCTGATTAATCAC 58.887 47.826 14.23 4.61 33.08 3.06
838 902 3.692593 TCGAGTCACCTGATTAATCACGA 59.307 43.478 14.23 15.58 32.50 4.35
845 926 2.285026 CCTGATTAATCACGACAACGCG 60.285 50.000 14.23 3.53 43.96 6.01
864 945 0.323629 GAATGACTTGTGGGTCCCGA 59.676 55.000 2.65 0.00 35.54 5.14
877 958 0.824759 GTCCCGAGTTAGTCCAGCAT 59.175 55.000 0.00 0.00 0.00 3.79
981 1066 4.641396 TCAATCAATCCGCGGAATCTATT 58.359 39.130 34.66 24.07 0.00 1.73
1041 1126 2.750350 CCCTTGCTTCCGGTGACT 59.250 61.111 0.00 0.00 0.00 3.41
1117 1226 1.551908 CCAGCTCTTCCTCAGCAGGT 61.552 60.000 0.00 0.00 41.28 4.00
1341 1450 2.506061 CCTCCTCAGCATCCTCGGG 61.506 68.421 0.00 0.00 0.00 5.14
1696 1805 5.007626 CCAACGAGTTCATTTCAAGTCTGAA 59.992 40.000 0.00 0.00 39.87 3.02
1707 1816 9.435688 TCATTTCAAGTCTGAATCTAATTTCGA 57.564 29.630 0.00 0.00 41.22 3.71
1728 1837 7.834068 TCGAGAGATCTGATTTTGGTTTTAG 57.166 36.000 0.00 0.00 33.31 1.85
1780 1890 5.274718 CGTGAGCTGTATTCTCTCGTATTT 58.725 41.667 0.00 0.00 40.53 1.40
1827 1944 6.822667 AATTGATCACTGTGCACTATGAAA 57.177 33.333 22.08 15.28 0.00 2.69
1835 1952 4.754618 ACTGTGCACTATGAAACGATTGAA 59.245 37.500 19.41 0.00 0.00 2.69
1897 2014 7.867909 TCTCGTATTTAGCCAGATTGTTCATAG 59.132 37.037 0.00 0.00 0.00 2.23
1898 2015 7.497595 TCGTATTTAGCCAGATTGTTCATAGT 58.502 34.615 0.00 0.00 0.00 2.12
1899 2016 8.635328 TCGTATTTAGCCAGATTGTTCATAGTA 58.365 33.333 0.00 0.00 0.00 1.82
1934 2051 3.119137 GGTTTTCACTGTGTCTGCCTTTT 60.119 43.478 7.79 0.00 0.00 2.27
1935 2052 3.781079 TTTCACTGTGTCTGCCTTTTG 57.219 42.857 7.79 0.00 0.00 2.44
2067 2364 0.606673 GCCTCCTCAAACGCCTTCTT 60.607 55.000 0.00 0.00 0.00 2.52
2068 2365 1.897560 CCTCCTCAAACGCCTTCTTT 58.102 50.000 0.00 0.00 0.00 2.52
2069 2366 1.807142 CCTCCTCAAACGCCTTCTTTC 59.193 52.381 0.00 0.00 0.00 2.62
2070 2367 1.461127 CTCCTCAAACGCCTTCTTTCG 59.539 52.381 0.00 0.00 0.00 3.46
2071 2368 0.517316 CCTCAAACGCCTTCTTTCGG 59.483 55.000 0.00 0.00 0.00 4.30
2072 2369 1.508632 CTCAAACGCCTTCTTTCGGA 58.491 50.000 0.00 0.00 0.00 4.55
2073 2370 2.076863 CTCAAACGCCTTCTTTCGGAT 58.923 47.619 0.00 0.00 0.00 4.18
2074 2371 1.804151 TCAAACGCCTTCTTTCGGATG 59.196 47.619 0.00 0.00 0.00 3.51
2075 2372 1.535462 CAAACGCCTTCTTTCGGATGT 59.465 47.619 0.00 0.00 0.00 3.06
2076 2373 1.156736 AACGCCTTCTTTCGGATGTG 58.843 50.000 0.00 0.00 0.00 3.21
2077 2374 1.298859 ACGCCTTCTTTCGGATGTGC 61.299 55.000 0.00 0.00 0.00 4.57
2078 2375 1.021390 CGCCTTCTTTCGGATGTGCT 61.021 55.000 0.00 0.00 0.00 4.40
2079 2376 0.729690 GCCTTCTTTCGGATGTGCTC 59.270 55.000 0.00 0.00 0.00 4.26
2080 2377 1.945819 GCCTTCTTTCGGATGTGCTCA 60.946 52.381 0.00 0.00 0.00 4.26
2081 2378 1.734465 CCTTCTTTCGGATGTGCTCAC 59.266 52.381 0.00 0.00 0.00 3.51
2082 2379 2.416747 CTTCTTTCGGATGTGCTCACA 58.583 47.619 5.08 5.08 46.44 3.58
2083 2380 2.084610 TCTTTCGGATGTGCTCACAG 57.915 50.000 8.74 0.00 45.48 3.66
2084 2381 1.081892 CTTTCGGATGTGCTCACAGG 58.918 55.000 8.74 1.37 45.48 4.00
2085 2382 0.321564 TTTCGGATGTGCTCACAGGG 60.322 55.000 8.74 1.05 45.48 4.45
2086 2383 1.191489 TTCGGATGTGCTCACAGGGA 61.191 55.000 8.74 3.23 45.48 4.20
2087 2384 0.977627 TCGGATGTGCTCACAGGGAT 60.978 55.000 8.74 0.00 45.48 3.85
2088 2385 0.752658 CGGATGTGCTCACAGGGATA 59.247 55.000 8.74 0.00 45.48 2.59
2089 2386 1.269988 CGGATGTGCTCACAGGGATAG 60.270 57.143 8.74 0.00 45.48 2.08
2090 2387 1.765314 GGATGTGCTCACAGGGATAGT 59.235 52.381 8.74 0.00 45.48 2.12
2091 2388 2.484417 GGATGTGCTCACAGGGATAGTG 60.484 54.545 8.74 0.00 45.48 2.74
2092 2389 1.644509 TGTGCTCACAGGGATAGTGT 58.355 50.000 0.00 0.00 38.16 3.55
2093 2390 1.276138 TGTGCTCACAGGGATAGTGTG 59.724 52.381 0.00 0.00 45.65 3.82
2094 2391 1.276421 GTGCTCACAGGGATAGTGTGT 59.724 52.381 3.33 0.00 44.75 3.72
2095 2392 1.276138 TGCTCACAGGGATAGTGTGTG 59.724 52.381 3.33 2.55 44.75 3.82
2096 2393 1.276421 GCTCACAGGGATAGTGTGTGT 59.724 52.381 3.33 0.00 44.75 3.72
2097 2394 2.932622 GCTCACAGGGATAGTGTGTGTG 60.933 54.545 3.33 0.00 44.75 3.82
2098 2395 1.001974 TCACAGGGATAGTGTGTGTGC 59.998 52.381 3.33 0.00 44.75 4.57
2099 2396 0.037326 ACAGGGATAGTGTGTGTGCG 60.037 55.000 0.00 0.00 0.00 5.34
2100 2397 0.037326 CAGGGATAGTGTGTGTGCGT 60.037 55.000 0.00 0.00 0.00 5.24
2101 2398 0.037326 AGGGATAGTGTGTGTGCGTG 60.037 55.000 0.00 0.00 0.00 5.34
2102 2399 0.320421 GGGATAGTGTGTGTGCGTGT 60.320 55.000 0.00 0.00 0.00 4.49
2103 2400 0.790207 GGATAGTGTGTGTGCGTGTG 59.210 55.000 0.00 0.00 0.00 3.82
2104 2401 1.497991 GATAGTGTGTGTGCGTGTGT 58.502 50.000 0.00 0.00 0.00 3.72
2105 2402 1.192312 GATAGTGTGTGTGCGTGTGTG 59.808 52.381 0.00 0.00 0.00 3.82
2106 2403 0.108567 TAGTGTGTGTGCGTGTGTGT 60.109 50.000 0.00 0.00 0.00 3.72
2107 2404 1.225991 GTGTGTGTGCGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2108 2405 2.277247 GTGTGTGCGTGTGTGTGC 60.277 61.111 0.00 0.00 0.00 4.57
2109 2406 2.743928 TGTGTGCGTGTGTGTGCA 60.744 55.556 0.00 0.00 39.13 4.57
2110 2407 2.111582 TGTGTGCGTGTGTGTGCAT 61.112 52.632 0.00 0.00 43.96 3.96
2111 2408 1.063972 GTGTGCGTGTGTGTGCATT 59.936 52.632 0.00 0.00 43.96 3.56
2112 2409 0.929824 GTGTGCGTGTGTGTGCATTC 60.930 55.000 0.00 0.00 43.96 2.67
2113 2410 1.354858 GTGCGTGTGTGTGCATTCA 59.645 52.632 0.00 0.00 43.96 2.57
2114 2411 0.929824 GTGCGTGTGTGTGCATTCAC 60.930 55.000 14.48 14.48 43.96 3.18
2135 2432 4.744570 ACAGAGGTGAATGTATACGTGTG 58.255 43.478 0.00 0.00 33.75 3.82
2136 2433 4.219944 ACAGAGGTGAATGTATACGTGTGT 59.780 41.667 0.00 0.00 35.33 3.72
2137 2434 5.416639 ACAGAGGTGAATGTATACGTGTGTA 59.583 40.000 0.00 0.00 37.40 2.90
2138 2435 6.096423 ACAGAGGTGAATGTATACGTGTGTAT 59.904 38.462 0.00 0.00 43.62 2.29
2139 2436 7.283807 ACAGAGGTGAATGTATACGTGTGTATA 59.716 37.037 0.00 0.00 41.50 1.47
2140 2437 8.297426 CAGAGGTGAATGTATACGTGTGTATAT 58.703 37.037 0.00 0.00 43.52 0.86
2141 2438 8.297426 AGAGGTGAATGTATACGTGTGTATATG 58.703 37.037 0.00 0.00 43.52 1.78
2142 2439 8.173542 AGGTGAATGTATACGTGTGTATATGA 57.826 34.615 0.00 0.00 43.52 2.15
2143 2440 8.297426 AGGTGAATGTATACGTGTGTATATGAG 58.703 37.037 0.00 0.00 43.52 2.90
2144 2441 7.061905 GGTGAATGTATACGTGTGTATATGAGC 59.938 40.741 0.00 0.00 43.52 4.26
2145 2442 7.593644 GTGAATGTATACGTGTGTATATGAGCA 59.406 37.037 0.00 0.00 43.52 4.26
2146 2443 7.593644 TGAATGTATACGTGTGTATATGAGCAC 59.406 37.037 0.00 0.00 43.52 4.40
2147 2444 6.628919 TGTATACGTGTGTATATGAGCACT 57.371 37.500 0.00 0.00 43.52 4.40
2148 2445 7.034685 TGTATACGTGTGTATATGAGCACTT 57.965 36.000 0.00 0.00 43.52 3.16
2149 2446 6.915843 TGTATACGTGTGTATATGAGCACTTG 59.084 38.462 0.00 4.23 43.52 3.16
2150 2447 2.930040 ACGTGTGTATATGAGCACTTGC 59.070 45.455 0.00 0.00 42.49 4.01
2151 2448 6.517551 ATACGTGTGTATATGAGCACTTGCG 61.518 44.000 0.00 10.37 41.85 4.85
2152 2449 8.818406 ATACGTGTGTATATGAGCACTTGCGT 62.818 42.308 0.00 17.57 41.85 5.24
2162 2459 2.232239 GCACTTGCGTCTGTGTATTG 57.768 50.000 0.00 0.00 36.63 1.90
2163 2460 1.531149 GCACTTGCGTCTGTGTATTGT 59.469 47.619 0.00 0.00 36.63 2.71
2164 2461 2.662791 GCACTTGCGTCTGTGTATTGTG 60.663 50.000 0.00 0.00 36.63 3.33
2165 2462 2.543848 CACTTGCGTCTGTGTATTGTGT 59.456 45.455 0.00 0.00 0.00 3.72
2166 2463 3.002246 CACTTGCGTCTGTGTATTGTGTT 59.998 43.478 0.00 0.00 0.00 3.32
2167 2464 4.210328 CACTTGCGTCTGTGTATTGTGTTA 59.790 41.667 0.00 0.00 0.00 2.41
2168 2465 4.812091 ACTTGCGTCTGTGTATTGTGTTAA 59.188 37.500 0.00 0.00 0.00 2.01
2169 2466 4.983215 TGCGTCTGTGTATTGTGTTAAG 57.017 40.909 0.00 0.00 0.00 1.85
2170 2467 4.623002 TGCGTCTGTGTATTGTGTTAAGA 58.377 39.130 0.00 0.00 0.00 2.10
2171 2468 5.051153 TGCGTCTGTGTATTGTGTTAAGAA 58.949 37.500 0.00 0.00 0.00 2.52
2172 2469 5.524281 TGCGTCTGTGTATTGTGTTAAGAAA 59.476 36.000 0.00 0.00 0.00 2.52
2173 2470 6.037281 TGCGTCTGTGTATTGTGTTAAGAAAA 59.963 34.615 0.00 0.00 0.00 2.29
2174 2471 6.908284 GCGTCTGTGTATTGTGTTAAGAAAAA 59.092 34.615 0.00 0.00 0.00 1.94
2175 2472 7.097168 GCGTCTGTGTATTGTGTTAAGAAAAAC 60.097 37.037 0.00 0.00 0.00 2.43
2176 2473 7.109668 CGTCTGTGTATTGTGTTAAGAAAAACG 59.890 37.037 0.00 0.00 31.76 3.60
2177 2474 6.908284 TCTGTGTATTGTGTTAAGAAAAACGC 59.092 34.615 0.00 0.00 39.71 4.84
2178 2475 6.787225 TGTGTATTGTGTTAAGAAAAACGCT 58.213 32.000 2.45 0.00 39.92 5.07
2179 2476 7.251994 TGTGTATTGTGTTAAGAAAAACGCTT 58.748 30.769 2.45 0.00 39.92 4.68
2180 2477 7.429920 TGTGTATTGTGTTAAGAAAAACGCTTC 59.570 33.333 2.45 0.00 39.92 3.86
2193 2490 0.102481 ACGCTTCTATACGTGGCAGG 59.898 55.000 5.50 5.50 41.76 4.85
2195 2492 0.880718 GCTTCTATACGTGGCAGGCC 60.881 60.000 7.17 2.62 0.00 5.19
2196 2493 0.597637 CTTCTATACGTGGCAGGCCG 60.598 60.000 7.17 0.12 39.42 6.13
2201 2498 2.472414 ATACGTGGCAGGCCGGAAAA 62.472 55.000 5.05 0.00 39.42 2.29
2206 2518 2.626780 GGCAGGCCGGAAAACTCAC 61.627 63.158 5.05 0.00 0.00 3.51
2226 2538 0.178975 AAAATTGTGACCTGGGCGGA 60.179 50.000 0.00 0.00 36.31 5.54
2227 2539 0.039618 AAATTGTGACCTGGGCGGAT 59.960 50.000 0.00 0.00 36.31 4.18
2229 2541 0.394352 ATTGTGACCTGGGCGGATTC 60.394 55.000 0.00 0.00 36.31 2.52
2232 2544 1.923395 TGACCTGGGCGGATTCCTT 60.923 57.895 0.00 0.00 36.31 3.36
2233 2545 1.452108 GACCTGGGCGGATTCCTTG 60.452 63.158 0.00 0.00 36.31 3.61
2237 2549 1.312815 CTGGGCGGATTCCTTGAATC 58.687 55.000 8.04 8.04 45.26 2.52
2240 2552 0.463833 GGCGGATTCCTTGAATCGGT 60.464 55.000 19.18 0.00 46.47 4.69
2251 2563 5.722263 TCCTTGAATCGGTTTTATACGTCA 58.278 37.500 0.00 0.00 0.00 4.35
2256 2568 3.598019 TCGGTTTTATACGTCAAGGCT 57.402 42.857 0.00 0.00 0.00 4.58
2278 2590 1.357420 ACCAGCACCCACATATCCAAA 59.643 47.619 0.00 0.00 0.00 3.28
2285 2601 4.708177 CACCCACATATCCAAAGTCTAGG 58.292 47.826 0.00 0.00 0.00 3.02
2312 2628 1.832912 GAGGATGCCTCGACCCATT 59.167 57.895 0.00 0.00 41.08 3.16
2314 2630 0.982852 AGGATGCCTCGACCCATTCA 60.983 55.000 2.61 0.00 0.00 2.57
2315 2631 0.533755 GGATGCCTCGACCCATTCAG 60.534 60.000 0.00 0.00 0.00 3.02
2318 2634 2.989639 CCTCGACCCATTCAGGCA 59.010 61.111 0.00 0.00 35.39 4.75
2319 2635 1.153289 CCTCGACCCATTCAGGCAG 60.153 63.158 0.00 0.00 35.39 4.85
2321 2637 2.825836 CGACCCATTCAGGCAGGC 60.826 66.667 0.00 0.00 35.39 4.85
2322 2638 2.825836 GACCCATTCAGGCAGGCG 60.826 66.667 0.00 0.00 35.39 5.52
2323 2639 3.628646 GACCCATTCAGGCAGGCGT 62.629 63.158 0.00 0.00 35.39 5.68
2324 2640 3.136123 CCCATTCAGGCAGGCGTG 61.136 66.667 7.60 7.60 35.39 5.34
2325 2641 2.360350 CCATTCAGGCAGGCGTGT 60.360 61.111 12.97 0.00 33.97 4.49
2326 2642 2.693762 CCATTCAGGCAGGCGTGTG 61.694 63.158 12.97 5.88 33.97 3.82
2327 2643 1.968017 CATTCAGGCAGGCGTGTGT 60.968 57.895 12.97 1.85 33.97 3.72
2328 2644 1.968017 ATTCAGGCAGGCGTGTGTG 60.968 57.895 12.97 6.08 33.97 3.82
2329 2645 2.680974 ATTCAGGCAGGCGTGTGTGT 62.681 55.000 12.97 0.00 33.97 3.72
2330 2646 3.349006 CAGGCAGGCGTGTGTGTC 61.349 66.667 8.40 0.00 0.00 3.67
2331 2647 3.860605 AGGCAGGCGTGTGTGTCA 61.861 61.111 8.40 0.00 0.00 3.58
2332 2648 2.669569 GGCAGGCGTGTGTGTCAT 60.670 61.111 8.40 0.00 0.00 3.06
2333 2649 2.557805 GCAGGCGTGTGTGTCATG 59.442 61.111 8.40 0.00 36.25 3.07
2334 2650 2.253758 GCAGGCGTGTGTGTCATGT 61.254 57.895 8.40 0.00 35.64 3.21
2335 2651 1.862123 CAGGCGTGTGTGTCATGTC 59.138 57.895 0.00 0.00 37.89 3.06
2336 2652 1.664649 AGGCGTGTGTGTCATGTCG 60.665 57.895 0.00 0.00 41.95 4.35
2337 2653 2.667318 GGCGTGTGTGTCATGTCGG 61.667 63.158 0.00 0.00 35.64 4.79
2338 2654 2.667318 GCGTGTGTGTCATGTCGGG 61.667 63.158 0.00 0.00 35.64 5.14
2339 2655 2.667318 CGTGTGTGTCATGTCGGGC 61.667 63.158 0.00 0.00 0.00 6.13
2340 2656 2.031919 TGTGTGTCATGTCGGGCC 59.968 61.111 0.00 0.00 0.00 5.80
2341 2657 2.347490 GTGTGTCATGTCGGGCCT 59.653 61.111 0.84 0.00 0.00 5.19
2342 2658 1.741770 GTGTGTCATGTCGGGCCTC 60.742 63.158 0.84 0.00 0.00 4.70
2343 2659 2.509336 GTGTCATGTCGGGCCTCG 60.509 66.667 0.84 4.76 40.90 4.63
2344 2660 2.678580 TGTCATGTCGGGCCTCGA 60.679 61.111 11.66 11.66 46.77 4.04
2354 2670 2.190578 GGCCTCGACCCATTCAGG 59.809 66.667 0.00 0.00 37.03 3.86
2355 2671 2.514824 GCCTCGACCCATTCAGGC 60.515 66.667 0.00 0.00 39.68 4.85
2356 2672 2.989639 CCTCGACCCATTCAGGCA 59.010 61.111 0.00 0.00 35.39 4.75
2357 2673 1.153289 CCTCGACCCATTCAGGCAG 60.153 63.158 0.00 0.00 35.39 4.85
2358 2674 1.153289 CTCGACCCATTCAGGCAGG 60.153 63.158 0.00 0.00 35.39 4.85
2359 2675 1.903877 CTCGACCCATTCAGGCAGGT 61.904 60.000 0.00 0.00 35.39 4.00
2360 2676 1.746615 CGACCCATTCAGGCAGGTG 60.747 63.158 0.00 0.00 35.39 4.00
2361 2677 1.380302 GACCCATTCAGGCAGGTGT 59.620 57.895 0.00 0.00 35.39 4.16
2362 2678 0.962356 GACCCATTCAGGCAGGTGTG 60.962 60.000 0.00 0.00 35.39 3.82
2363 2679 1.075482 CCCATTCAGGCAGGTGTGT 59.925 57.895 0.00 0.00 35.39 3.72
2364 2680 1.246056 CCCATTCAGGCAGGTGTGTG 61.246 60.000 0.00 0.00 35.39 3.82
2365 2681 0.538057 CCATTCAGGCAGGTGTGTGT 60.538 55.000 0.00 0.00 0.00 3.72
2370 2686 0.535780 CAGGCAGGTGTGTGTGTCAT 60.536 55.000 0.00 0.00 0.00 3.06
2371 2687 0.535780 AGGCAGGTGTGTGTGTCATG 60.536 55.000 0.00 0.00 0.00 3.07
2383 2699 0.732880 GTGTCATGTCGGACCAGACG 60.733 60.000 18.80 0.00 43.70 4.18
2396 2712 2.647356 CAGACGGACTGGACTCACT 58.353 57.895 0.00 0.00 42.39 3.41
2404 2720 3.927142 CGGACTGGACTCACTACAAATTC 59.073 47.826 0.00 0.00 0.00 2.17
2405 2721 4.254492 GGACTGGACTCACTACAAATTCC 58.746 47.826 0.00 0.00 0.00 3.01
2406 2722 4.262894 GGACTGGACTCACTACAAATTCCA 60.263 45.833 0.00 0.00 0.00 3.53
2407 2723 5.491982 GACTGGACTCACTACAAATTCCAT 58.508 41.667 0.00 0.00 32.74 3.41
2408 2724 5.491982 ACTGGACTCACTACAAATTCCATC 58.508 41.667 0.00 0.00 32.74 3.51
2409 2725 5.249393 ACTGGACTCACTACAAATTCCATCT 59.751 40.000 0.00 0.00 32.74 2.90
2410 2726 6.440647 ACTGGACTCACTACAAATTCCATCTA 59.559 38.462 0.00 0.00 32.74 1.98
2411 2727 7.038302 ACTGGACTCACTACAAATTCCATCTAA 60.038 37.037 0.00 0.00 32.74 2.10
2412 2728 7.861629 TGGACTCACTACAAATTCCATCTAAT 58.138 34.615 0.00 0.00 0.00 1.73
2413 2729 8.328758 TGGACTCACTACAAATTCCATCTAATT 58.671 33.333 0.00 0.00 0.00 1.40
2414 2730 8.616076 GGACTCACTACAAATTCCATCTAATTG 58.384 37.037 0.00 0.00 0.00 2.32
2447 2763 2.211468 AAATCCAACGCCCTCCTCCC 62.211 60.000 0.00 0.00 0.00 4.30
2458 2774 1.147153 CTCCTCCCGCTTTCATCCC 59.853 63.158 0.00 0.00 0.00 3.85
2466 2782 2.497273 CCCGCTTTCATCCCTCATTTTT 59.503 45.455 0.00 0.00 0.00 1.94
2494 2810 3.470888 CCCTCGCCGTCCTCCATT 61.471 66.667 0.00 0.00 0.00 3.16
2495 2811 2.107141 CCTCGCCGTCCTCCATTC 59.893 66.667 0.00 0.00 0.00 2.67
2496 2812 2.427245 CCTCGCCGTCCTCCATTCT 61.427 63.158 0.00 0.00 0.00 2.40
2497 2813 1.517832 CTCGCCGTCCTCCATTCTT 59.482 57.895 0.00 0.00 0.00 2.52
2498 2814 0.807667 CTCGCCGTCCTCCATTCTTG 60.808 60.000 0.00 0.00 0.00 3.02
2499 2815 2.464459 CGCCGTCCTCCATTCTTGC 61.464 63.158 0.00 0.00 0.00 4.01
2500 2816 1.078143 GCCGTCCTCCATTCTTGCT 60.078 57.895 0.00 0.00 0.00 3.91
2501 2817 1.092345 GCCGTCCTCCATTCTTGCTC 61.092 60.000 0.00 0.00 0.00 4.26
2502 2818 0.462759 CCGTCCTCCATTCTTGCTCC 60.463 60.000 0.00 0.00 0.00 4.70
2511 2827 2.293677 CCATTCTTGCTCCATCATCTGC 59.706 50.000 0.00 0.00 0.00 4.26
2515 2831 0.807275 TTGCTCCATCATCTGCGTCG 60.807 55.000 0.00 0.00 0.00 5.12
2525 2841 1.109920 ATCTGCGTCGCCCTAGATGT 61.110 55.000 15.88 0.00 0.00 3.06
2542 2858 4.966787 TTGTTGCCACCCGCCCTC 62.967 66.667 0.00 0.00 36.24 4.30
2544 2860 4.966787 GTTGCCACCCGCCCTCAA 62.967 66.667 0.00 0.00 36.24 3.02
2545 2861 4.966787 TTGCCACCCGCCCTCAAC 62.967 66.667 0.00 0.00 36.24 3.18
2567 2883 1.224069 CCGCTATGGATGTTGCCTCG 61.224 60.000 0.00 0.00 42.00 4.63
2575 2891 0.802607 GATGTTGCCTCGGAGTCGTC 60.803 60.000 4.02 0.00 37.69 4.20
2576 2892 2.126031 GTTGCCTCGGAGTCGTCC 60.126 66.667 4.02 0.00 39.88 4.79
2590 2906 3.637273 GTCCGTGGGGCTCCTGTT 61.637 66.667 3.07 0.00 0.00 3.16
2591 2907 3.636231 TCCGTGGGGCTCCTGTTG 61.636 66.667 3.07 0.00 0.00 3.33
2592 2908 3.636231 CCGTGGGGCTCCTGTTGA 61.636 66.667 3.07 0.00 0.00 3.18
2593 2909 2.046892 CGTGGGGCTCCTGTTGAG 60.047 66.667 3.07 0.00 44.47 3.02
2594 2910 2.352805 GTGGGGCTCCTGTTGAGG 59.647 66.667 3.07 0.00 41.73 3.86
2617 2933 8.943909 AGGATATAACTATTTGTATAAGCCGC 57.056 34.615 0.00 0.00 0.00 6.53
2618 2934 7.985752 AGGATATAACTATTTGTATAAGCCGCC 59.014 37.037 0.00 0.00 0.00 6.13
2619 2935 7.226128 GGATATAACTATTTGTATAAGCCGCCC 59.774 40.741 0.00 0.00 0.00 6.13
2620 2936 3.849563 ACTATTTGTATAAGCCGCCCA 57.150 42.857 0.00 0.00 0.00 5.36
2621 2937 3.740115 ACTATTTGTATAAGCCGCCCAG 58.260 45.455 0.00 0.00 0.00 4.45
2622 2938 1.981256 ATTTGTATAAGCCGCCCAGG 58.019 50.000 0.00 0.00 44.97 4.45
2623 2939 0.913205 TTTGTATAAGCCGCCCAGGA 59.087 50.000 0.00 0.00 45.00 3.86
2624 2940 0.468226 TTGTATAAGCCGCCCAGGAG 59.532 55.000 0.00 0.00 45.00 3.69
2625 2941 1.371558 GTATAAGCCGCCCAGGAGG 59.628 63.158 1.44 1.44 45.00 4.30
2636 2952 3.793888 CAGGAGGGGCCGGGTTAC 61.794 72.222 2.18 0.00 43.43 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.079317 GTCGGCTTCTTTCTCCGCTC 61.079 60.000 0.00 0.00 42.65 5.03
43 44 1.079750 GTCGGCTTCTTTCTCCGCT 60.080 57.895 0.00 0.00 42.65 5.52
70 72 0.660488 CTGGACTCCATCTCGTCGAG 59.340 60.000 16.33 16.33 30.82 4.04
162 185 0.601558 CACCAGGTGTGTACGCTAGT 59.398 55.000 11.99 0.00 40.26 2.57
177 200 2.515398 CCACTGGGCAAGACACCA 59.485 61.111 0.00 0.00 35.05 4.17
232 256 1.903877 CTGAGTGGAACCGCCTGGAT 61.904 60.000 0.00 0.00 37.80 3.41
233 257 2.525629 TGAGTGGAACCGCCTGGA 60.526 61.111 0.00 0.00 37.80 3.86
236 260 0.904865 TCATCTGAGTGGAACCGCCT 60.905 55.000 0.48 0.00 37.80 5.52
291 317 5.279206 CCCAGAGGTATATACTTCAGTGCAG 60.279 48.000 22.71 6.22 35.05 4.41
295 321 4.140663 AGCCCCAGAGGTATATACTTCAGT 60.141 45.833 22.71 4.71 38.26 3.41
302 328 2.556782 CCGTGAGCCCCAGAGGTATATA 60.557 54.545 0.00 0.00 38.26 0.86
400 439 1.069513 TCGGCGGATATTCGTTTCCAT 59.930 47.619 7.21 0.00 31.99 3.41
404 443 1.283736 GTGTCGGCGGATATTCGTTT 58.716 50.000 7.21 0.00 0.00 3.60
407 446 2.014554 CGGTGTCGGCGGATATTCG 61.015 63.158 7.21 0.00 0.00 3.34
427 467 6.961721 TGGGGTAAGGTAAAACTAGTCTACAT 59.038 38.462 14.03 6.85 0.00 2.29
509 571 1.722464 CATGCAAACACAGCGGATTTG 59.278 47.619 11.70 11.70 36.58 2.32
586 650 3.262420 GAACACTGATGCGGTAACTGAT 58.738 45.455 0.00 0.00 0.00 2.90
589 653 2.831685 TGAACACTGATGCGGTAACT 57.168 45.000 0.00 0.00 0.00 2.24
593 657 0.324614 TCCATGAACACTGATGCGGT 59.675 50.000 0.00 0.00 0.00 5.68
608 672 1.997874 GGCCAGGAGACCAGTCCAT 60.998 63.158 0.00 0.00 39.34 3.41
619 683 2.186602 TTATTTGTCCGCGGCCAGGA 62.187 55.000 23.51 12.56 34.99 3.86
624 688 2.277057 GCGTTATTTGTCCGCGGC 60.277 61.111 23.51 16.75 37.89 6.53
659 723 7.396907 TCAAATTCCAAAAGGCATCTCTAATGA 59.603 33.333 0.00 0.00 0.00 2.57
661 725 7.722949 TCAAATTCCAAAAGGCATCTCTAAT 57.277 32.000 0.00 0.00 0.00 1.73
676 740 9.693739 TGCTATAATCTTTACCTTCAAATTCCA 57.306 29.630 0.00 0.00 0.00 3.53
684 748 9.967346 GGGAATTTTGCTATAATCTTTACCTTC 57.033 33.333 0.00 0.00 0.00 3.46
685 749 8.924303 GGGGAATTTTGCTATAATCTTTACCTT 58.076 33.333 0.00 0.00 0.00 3.50
686 750 7.509318 GGGGGAATTTTGCTATAATCTTTACCT 59.491 37.037 0.00 0.00 0.00 3.08
687 751 7.523216 CGGGGGAATTTTGCTATAATCTTTACC 60.523 40.741 0.00 0.00 0.00 2.85
688 752 7.368059 CGGGGGAATTTTGCTATAATCTTTAC 58.632 38.462 0.00 0.00 0.00 2.01
689 753 6.015772 GCGGGGGAATTTTGCTATAATCTTTA 60.016 38.462 0.00 0.00 0.00 1.85
690 754 5.221441 GCGGGGGAATTTTGCTATAATCTTT 60.221 40.000 0.00 0.00 0.00 2.52
691 755 4.280929 GCGGGGGAATTTTGCTATAATCTT 59.719 41.667 0.00 0.00 0.00 2.40
692 756 3.826729 GCGGGGGAATTTTGCTATAATCT 59.173 43.478 0.00 0.00 0.00 2.40
693 757 3.572255 TGCGGGGGAATTTTGCTATAATC 59.428 43.478 0.00 0.00 0.00 1.75
694 758 3.571590 TGCGGGGGAATTTTGCTATAAT 58.428 40.909 0.00 0.00 0.00 1.28
695 759 3.019799 TGCGGGGGAATTTTGCTATAA 57.980 42.857 0.00 0.00 0.00 0.98
696 760 2.738587 TGCGGGGGAATTTTGCTATA 57.261 45.000 0.00 0.00 0.00 1.31
697 761 1.859302 TTGCGGGGGAATTTTGCTAT 58.141 45.000 0.00 0.00 0.00 2.97
698 762 1.633774 TTTGCGGGGGAATTTTGCTA 58.366 45.000 0.00 0.00 0.00 3.49
699 763 0.761802 TTTTGCGGGGGAATTTTGCT 59.238 45.000 0.00 0.00 0.00 3.91
700 764 1.598882 TTTTTGCGGGGGAATTTTGC 58.401 45.000 0.00 0.00 0.00 3.68
724 788 9.527566 CCGTTAAAACTCAAATTTGCAATAATG 57.472 29.630 13.54 11.71 0.00 1.90
725 789 9.482627 TCCGTTAAAACTCAAATTTGCAATAAT 57.517 25.926 13.54 0.00 0.00 1.28
726 790 8.873215 TCCGTTAAAACTCAAATTTGCAATAA 57.127 26.923 13.54 5.69 0.00 1.40
728 792 7.961325 ATCCGTTAAAACTCAAATTTGCAAT 57.039 28.000 13.54 0.00 0.00 3.56
729 793 7.113684 CGTATCCGTTAAAACTCAAATTTGCAA 59.886 33.333 13.54 0.00 0.00 4.08
730 794 6.579292 CGTATCCGTTAAAACTCAAATTTGCA 59.421 34.615 13.54 2.12 0.00 4.08
731 795 6.033091 CCGTATCCGTTAAAACTCAAATTTGC 59.967 38.462 13.54 0.00 0.00 3.68
732 796 6.033091 GCCGTATCCGTTAAAACTCAAATTTG 59.967 38.462 12.15 12.15 0.00 2.32
733 797 6.072342 AGCCGTATCCGTTAAAACTCAAATTT 60.072 34.615 0.00 0.00 0.00 1.82
734 798 5.413523 AGCCGTATCCGTTAAAACTCAAATT 59.586 36.000 0.00 0.00 0.00 1.82
735 799 4.939439 AGCCGTATCCGTTAAAACTCAAAT 59.061 37.500 0.00 0.00 0.00 2.32
736 800 4.317488 AGCCGTATCCGTTAAAACTCAAA 58.683 39.130 0.00 0.00 0.00 2.69
737 801 3.928375 GAGCCGTATCCGTTAAAACTCAA 59.072 43.478 0.00 0.00 0.00 3.02
738 802 3.514645 GAGCCGTATCCGTTAAAACTCA 58.485 45.455 0.00 0.00 0.00 3.41
739 803 2.862536 GGAGCCGTATCCGTTAAAACTC 59.137 50.000 0.00 0.00 0.00 3.01
740 804 2.234414 TGGAGCCGTATCCGTTAAAACT 59.766 45.455 0.00 0.00 42.77 2.66
741 805 2.620242 TGGAGCCGTATCCGTTAAAAC 58.380 47.619 0.00 0.00 42.77 2.43
742 806 3.547054 ATGGAGCCGTATCCGTTAAAA 57.453 42.857 0.00 0.00 42.77 1.52
743 807 3.199677 CAATGGAGCCGTATCCGTTAAA 58.800 45.455 9.56 0.00 45.00 1.52
744 808 2.484065 CCAATGGAGCCGTATCCGTTAA 60.484 50.000 9.56 0.00 45.00 2.01
745 809 1.069513 CCAATGGAGCCGTATCCGTTA 59.930 52.381 9.56 0.00 45.00 3.18
747 811 1.445942 CCAATGGAGCCGTATCCGT 59.554 57.895 0.00 0.00 42.77 4.69
762 826 1.273552 GGAATCCCCAAATCCACCCAA 60.274 52.381 0.00 0.00 33.30 4.12
771 835 5.171541 AGAGGTATAGAGGAATCCCCAAA 57.828 43.478 0.00 0.00 37.41 3.28
781 845 4.898861 AGCTGGAAGAAAGAGGTATAGAGG 59.101 45.833 0.00 0.00 34.07 3.69
782 846 6.478512 AAGCTGGAAGAAAGAGGTATAGAG 57.521 41.667 0.00 0.00 34.07 2.43
801 865 1.507141 CTCGACCAAACCGCAAAGCT 61.507 55.000 0.00 0.00 0.00 3.74
824 888 3.304382 GCGTTGTCGTGATTAATCAGG 57.696 47.619 25.38 25.38 42.36 3.86
836 900 0.506932 ACAAGTCATTCGCGTTGTCG 59.493 50.000 5.77 0.00 40.37 4.35
838 902 0.586319 CCACAAGTCATTCGCGTTGT 59.414 50.000 5.77 5.22 33.37 3.32
845 926 0.323629 TCGGGACCCACAAGTCATTC 59.676 55.000 12.15 0.00 38.59 2.67
864 945 2.027745 CACAGTGGATGCTGGACTAACT 60.028 50.000 0.00 0.00 40.59 2.24
948 1029 0.534877 ATTGATTGATGGGCGCGCTA 60.535 50.000 32.29 20.78 0.00 4.26
953 1038 1.283793 GCGGATTGATTGATGGGCG 59.716 57.895 0.00 0.00 0.00 6.13
1100 1209 0.612744 GAACCTGCTGAGGAAGAGCT 59.387 55.000 0.00 0.00 42.93 4.09
1341 1450 1.222113 GTAGAGGAAGCACCAGGCC 59.778 63.158 0.00 0.00 46.50 5.19
1696 1805 9.270640 CCAAAATCAGATCTCTCGAAATTAGAT 57.729 33.333 0.00 0.00 32.70 1.98
1707 1816 9.965902 ACATACTAAAACCAAAATCAGATCTCT 57.034 29.630 0.00 0.00 0.00 3.10
1728 1837 8.839310 ATCTTTGCATAACTGGAGATACATAC 57.161 34.615 0.00 0.00 0.00 2.39
1780 1890 5.252547 TGCTAATGCTTAACATCTGGTCAA 58.747 37.500 0.00 0.00 38.34 3.18
1827 1944 5.351233 TCAATTTGCTAACGTTCAATCGT 57.649 34.783 2.82 0.00 46.19 3.73
1835 1952 2.080693 TGCGGATCAATTTGCTAACGT 58.919 42.857 0.00 0.00 0.00 3.99
1882 1999 6.525629 ACCTGTATACTATGAACAATCTGGC 58.474 40.000 4.17 0.00 0.00 4.85
1897 2014 8.789762 ACAGTGAAAACCATAAAACCTGTATAC 58.210 33.333 0.00 0.00 0.00 1.47
1898 2015 8.788806 CACAGTGAAAACCATAAAACCTGTATA 58.211 33.333 0.00 0.00 0.00 1.47
1899 2016 7.286775 ACACAGTGAAAACCATAAAACCTGTAT 59.713 33.333 7.81 0.00 0.00 2.29
1917 2034 1.024271 GCAAAAGGCAGACACAGTGA 58.976 50.000 7.81 0.00 43.97 3.41
1951 2235 5.507985 GCACCAGAATTAGTTTGAGCAAGTT 60.508 40.000 0.00 0.00 0.00 2.66
1957 2241 4.326826 TCAGGCACCAGAATTAGTTTGAG 58.673 43.478 0.00 0.00 0.00 3.02
1965 2249 2.568509 CCCAAATTCAGGCACCAGAATT 59.431 45.455 12.74 12.74 42.59 2.17
2067 2364 1.191489 TCCCTGTGAGCACATCCGAA 61.191 55.000 3.49 0.00 41.01 4.30
2068 2365 0.977627 ATCCCTGTGAGCACATCCGA 60.978 55.000 3.49 1.01 41.01 4.55
2069 2366 0.752658 TATCCCTGTGAGCACATCCG 59.247 55.000 3.49 0.00 41.01 4.18
2070 2367 1.765314 ACTATCCCTGTGAGCACATCC 59.235 52.381 3.49 0.00 41.01 3.51
2071 2368 2.169352 ACACTATCCCTGTGAGCACATC 59.831 50.000 3.49 0.00 41.01 3.06
2072 2369 2.093288 CACACTATCCCTGTGAGCACAT 60.093 50.000 3.49 0.00 41.43 3.21
2073 2370 1.276138 CACACTATCCCTGTGAGCACA 59.724 52.381 3.02 3.02 41.43 4.57
2074 2371 1.276421 ACACACTATCCCTGTGAGCAC 59.724 52.381 5.58 0.00 41.43 4.40
2075 2372 1.276138 CACACACTATCCCTGTGAGCA 59.724 52.381 5.58 0.00 41.43 4.26
2076 2373 1.276421 ACACACACTATCCCTGTGAGC 59.724 52.381 5.58 0.00 41.43 4.26
2077 2374 2.932622 GCACACACACTATCCCTGTGAG 60.933 54.545 5.58 0.44 41.43 3.51
2078 2375 1.001974 GCACACACACTATCCCTGTGA 59.998 52.381 5.58 0.00 41.43 3.58
2079 2376 1.442769 GCACACACACTATCCCTGTG 58.557 55.000 0.00 0.00 43.99 3.66
2080 2377 0.037326 CGCACACACACTATCCCTGT 60.037 55.000 0.00 0.00 0.00 4.00
2081 2378 0.037326 ACGCACACACACTATCCCTG 60.037 55.000 0.00 0.00 0.00 4.45
2082 2379 0.037326 CACGCACACACACTATCCCT 60.037 55.000 0.00 0.00 0.00 4.20
2083 2380 0.320421 ACACGCACACACACTATCCC 60.320 55.000 0.00 0.00 0.00 3.85
2084 2381 0.790207 CACACGCACACACACTATCC 59.210 55.000 0.00 0.00 0.00 2.59
2085 2382 1.192312 CACACACGCACACACACTATC 59.808 52.381 0.00 0.00 0.00 2.08
2086 2383 1.217001 CACACACGCACACACACTAT 58.783 50.000 0.00 0.00 0.00 2.12
2087 2384 0.108567 ACACACACGCACACACACTA 60.109 50.000 0.00 0.00 0.00 2.74
2088 2385 1.375396 ACACACACGCACACACACT 60.375 52.632 0.00 0.00 0.00 3.55
2089 2386 1.225991 CACACACACGCACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
2090 2387 3.033166 GCACACACACGCACACACA 62.033 57.895 0.00 0.00 0.00 3.72
2091 2388 2.277247 GCACACACACGCACACAC 60.277 61.111 0.00 0.00 0.00 3.82
2092 2389 1.652167 AATGCACACACACGCACACA 61.652 50.000 0.00 0.00 41.79 3.72
2093 2390 0.929824 GAATGCACACACACGCACAC 60.930 55.000 0.00 0.00 41.79 3.82
2094 2391 1.354858 GAATGCACACACACGCACA 59.645 52.632 0.00 0.00 41.79 4.57
2095 2392 0.929824 GTGAATGCACACACACGCAC 60.930 55.000 16.76 2.00 44.51 5.34
2096 2393 1.354858 GTGAATGCACACACACGCA 59.645 52.632 16.76 0.00 44.51 5.24
2097 2394 4.210447 GTGAATGCACACACACGC 57.790 55.556 16.76 0.00 44.51 5.34
2112 2409 4.562789 CACACGTATACATTCACCTCTGTG 59.437 45.833 3.32 1.66 44.18 3.66
2113 2410 4.219944 ACACACGTATACATTCACCTCTGT 59.780 41.667 3.32 0.00 0.00 3.41
2114 2411 4.744570 ACACACGTATACATTCACCTCTG 58.255 43.478 3.32 0.00 0.00 3.35
2115 2412 6.710597 ATACACACGTATACATTCACCTCT 57.289 37.500 3.32 0.00 36.53 3.69
2116 2413 8.294577 TCATATACACACGTATACATTCACCTC 58.705 37.037 3.32 0.00 42.10 3.85
2117 2414 8.173542 TCATATACACACGTATACATTCACCT 57.826 34.615 3.32 0.00 42.10 4.00
2118 2415 7.061905 GCTCATATACACACGTATACATTCACC 59.938 40.741 3.32 0.00 42.10 4.02
2119 2416 7.593644 TGCTCATATACACACGTATACATTCAC 59.406 37.037 3.32 0.00 42.10 3.18
2120 2417 7.593644 GTGCTCATATACACACGTATACATTCA 59.406 37.037 3.32 0.00 42.10 2.57
2121 2418 7.808381 AGTGCTCATATACACACGTATACATTC 59.192 37.037 3.32 0.00 42.10 2.67
2122 2419 7.658261 AGTGCTCATATACACACGTATACATT 58.342 34.615 3.32 0.00 42.10 2.71
2123 2420 7.215719 AGTGCTCATATACACACGTATACAT 57.784 36.000 3.32 0.00 42.10 2.29
2124 2421 6.628919 AGTGCTCATATACACACGTATACA 57.371 37.500 3.32 0.00 42.10 2.29
2125 2422 6.129168 GCAAGTGCTCATATACACACGTATAC 60.129 42.308 0.00 0.00 39.32 1.47
2126 2423 5.918576 GCAAGTGCTCATATACACACGTATA 59.081 40.000 0.00 0.00 40.02 1.47
2127 2424 4.745125 GCAAGTGCTCATATACACACGTAT 59.255 41.667 0.00 0.00 39.30 3.06
2128 2425 4.109766 GCAAGTGCTCATATACACACGTA 58.890 43.478 0.00 0.00 39.30 3.57
2129 2426 2.930040 GCAAGTGCTCATATACACACGT 59.070 45.455 0.00 0.00 39.30 4.49
2130 2427 2.034591 CGCAAGTGCTCATATACACACG 60.035 50.000 1.21 0.00 39.30 4.49
2131 2428 3.575858 CGCAAGTGCTCATATACACAC 57.424 47.619 1.21 0.00 39.30 3.82
2147 2444 5.051153 TCTTAACACAATACACAGACGCAA 58.949 37.500 0.00 0.00 0.00 4.85
2148 2445 4.623002 TCTTAACACAATACACAGACGCA 58.377 39.130 0.00 0.00 0.00 5.24
2149 2446 5.585500 TTCTTAACACAATACACAGACGC 57.415 39.130 0.00 0.00 0.00 5.19
2150 2447 7.109668 CGTTTTTCTTAACACAATACACAGACG 59.890 37.037 0.00 0.00 0.00 4.18
2151 2448 7.097168 GCGTTTTTCTTAACACAATACACAGAC 60.097 37.037 0.00 0.00 0.00 3.51
2152 2449 6.908284 GCGTTTTTCTTAACACAATACACAGA 59.092 34.615 0.00 0.00 0.00 3.41
2153 2450 6.910433 AGCGTTTTTCTTAACACAATACACAG 59.090 34.615 0.00 0.00 0.00 3.66
2154 2451 6.787225 AGCGTTTTTCTTAACACAATACACA 58.213 32.000 0.00 0.00 0.00 3.72
2155 2452 7.642586 AGAAGCGTTTTTCTTAACACAATACAC 59.357 33.333 0.00 0.00 33.74 2.90
2156 2453 7.699566 AGAAGCGTTTTTCTTAACACAATACA 58.300 30.769 0.00 0.00 33.74 2.29
2157 2454 9.821662 ATAGAAGCGTTTTTCTTAACACAATAC 57.178 29.630 4.70 0.00 38.35 1.89
2159 2456 9.821662 GTATAGAAGCGTTTTTCTTAACACAAT 57.178 29.630 4.70 0.00 38.35 2.71
2160 2457 8.005466 CGTATAGAAGCGTTTTTCTTAACACAA 58.995 33.333 4.70 0.00 38.35 3.33
2161 2458 7.169645 ACGTATAGAAGCGTTTTTCTTAACACA 59.830 33.333 0.00 0.00 38.21 3.72
2162 2459 7.473411 CACGTATAGAAGCGTTTTTCTTAACAC 59.527 37.037 0.00 0.00 39.48 3.32
2163 2460 7.359431 CCACGTATAGAAGCGTTTTTCTTAACA 60.359 37.037 0.00 0.00 39.48 2.41
2164 2461 6.952083 CCACGTATAGAAGCGTTTTTCTTAAC 59.048 38.462 0.00 3.85 39.48 2.01
2165 2462 6.401367 GCCACGTATAGAAGCGTTTTTCTTAA 60.401 38.462 0.00 0.00 39.48 1.85
2166 2463 5.062558 GCCACGTATAGAAGCGTTTTTCTTA 59.937 40.000 0.00 0.00 39.48 2.10
2167 2464 4.142966 GCCACGTATAGAAGCGTTTTTCTT 60.143 41.667 0.00 0.00 39.48 2.52
2168 2465 3.370061 GCCACGTATAGAAGCGTTTTTCT 59.630 43.478 0.00 4.77 39.48 2.52
2169 2466 3.123959 TGCCACGTATAGAAGCGTTTTTC 59.876 43.478 0.00 0.00 39.48 2.29
2170 2467 3.068560 TGCCACGTATAGAAGCGTTTTT 58.931 40.909 0.00 0.00 39.48 1.94
2171 2468 2.671396 CTGCCACGTATAGAAGCGTTTT 59.329 45.455 0.00 0.00 39.48 2.43
2172 2469 2.268298 CTGCCACGTATAGAAGCGTTT 58.732 47.619 0.00 0.00 39.48 3.60
2173 2470 1.470979 CCTGCCACGTATAGAAGCGTT 60.471 52.381 0.00 0.00 39.48 4.84
2174 2471 0.102481 CCTGCCACGTATAGAAGCGT 59.898 55.000 0.00 0.00 42.45 5.07
2175 2472 1.215655 GCCTGCCACGTATAGAAGCG 61.216 60.000 0.00 0.00 0.00 4.68
2176 2473 0.880718 GGCCTGCCACGTATAGAAGC 60.881 60.000 2.58 0.00 35.81 3.86
2177 2474 0.597637 CGGCCTGCCACGTATAGAAG 60.598 60.000 9.17 0.00 35.37 2.85
2178 2475 1.440060 CGGCCTGCCACGTATAGAA 59.560 57.895 9.17 0.00 35.37 2.10
2179 2476 2.495409 CCGGCCTGCCACGTATAGA 61.495 63.158 9.17 0.00 35.37 1.98
2180 2477 2.023414 TTCCGGCCTGCCACGTATAG 62.023 60.000 9.17 0.00 35.37 1.31
2193 2490 3.453424 ACAATTTTGTGAGTTTTCCGGC 58.547 40.909 0.00 0.00 40.49 6.13
2206 2518 0.038343 CCGCCCAGGTCACAATTTTG 60.038 55.000 0.00 0.00 34.51 2.44
2219 2531 0.463654 CGATTCAAGGAATCCGCCCA 60.464 55.000 12.05 0.00 43.70 5.36
2220 2532 1.166531 CCGATTCAAGGAATCCGCCC 61.167 60.000 12.05 0.00 43.70 6.13
2222 2534 1.379527 AACCGATTCAAGGAATCCGC 58.620 50.000 12.05 0.00 43.70 5.54
2226 2538 6.819649 TGACGTATAAAACCGATTCAAGGAAT 59.180 34.615 0.00 0.00 34.71 3.01
2227 2539 6.164876 TGACGTATAAAACCGATTCAAGGAA 58.835 36.000 0.00 0.00 0.00 3.36
2229 2541 6.411630 TTGACGTATAAAACCGATTCAAGG 57.588 37.500 0.00 0.00 0.00 3.61
2232 2544 4.330620 GCCTTGACGTATAAAACCGATTCA 59.669 41.667 0.00 0.00 0.00 2.57
2233 2545 4.569564 AGCCTTGACGTATAAAACCGATTC 59.430 41.667 0.00 0.00 0.00 2.52
2237 2549 4.033243 GGTTAGCCTTGACGTATAAAACCG 59.967 45.833 0.00 0.00 0.00 4.44
2240 2552 4.632688 GCTGGTTAGCCTTGACGTATAAAA 59.367 41.667 0.00 0.00 44.33 1.52
2256 2568 2.200955 TGGATATGTGGGTGCTGGTTA 58.799 47.619 0.00 0.00 0.00 2.85
2278 2590 7.195474 AGGCATCCTCATATTTATCCTAGACT 58.805 38.462 0.00 0.00 0.00 3.24
2304 2620 2.825836 GCCTGCCTGAATGGGTCG 60.826 66.667 0.00 0.00 36.00 4.79
2312 2628 3.807631 GACACACACGCCTGCCTGA 62.808 63.158 0.00 0.00 0.00 3.86
2314 2630 3.182590 ATGACACACACGCCTGCCT 62.183 57.895 0.00 0.00 0.00 4.75
2315 2631 2.669569 ATGACACACACGCCTGCC 60.670 61.111 0.00 0.00 0.00 4.85
2318 2634 1.664649 CGACATGACACACACGCCT 60.665 57.895 0.00 0.00 0.00 5.52
2319 2635 2.667318 CCGACATGACACACACGCC 61.667 63.158 0.00 0.00 0.00 5.68
2321 2637 2.667318 GCCCGACATGACACACACG 61.667 63.158 0.00 0.00 0.00 4.49
2322 2638 2.325082 GGCCCGACATGACACACAC 61.325 63.158 0.00 0.00 0.00 3.82
2323 2639 2.031919 GGCCCGACATGACACACA 59.968 61.111 0.00 0.00 0.00 3.72
2324 2640 1.741770 GAGGCCCGACATGACACAC 60.742 63.158 0.00 0.00 0.00 3.82
2325 2641 2.662596 GAGGCCCGACATGACACA 59.337 61.111 0.00 0.00 0.00 3.72
2326 2642 2.509336 CGAGGCCCGACATGACAC 60.509 66.667 0.00 0.00 41.76 3.67
2327 2643 2.678580 TCGAGGCCCGACATGACA 60.679 61.111 11.66 0.00 43.23 3.58
2337 2653 2.190578 CCTGAATGGGTCGAGGCC 59.809 66.667 0.00 0.00 0.00 5.19
2338 2654 2.514824 GCCTGAATGGGTCGAGGC 60.515 66.667 0.00 0.00 40.79 4.70
2339 2655 1.153289 CTGCCTGAATGGGTCGAGG 60.153 63.158 0.00 0.00 36.00 4.63
2340 2656 1.153289 CCTGCCTGAATGGGTCGAG 60.153 63.158 0.00 0.00 36.00 4.04
2341 2657 1.918293 ACCTGCCTGAATGGGTCGA 60.918 57.895 0.00 0.00 36.00 4.20
2342 2658 1.746615 CACCTGCCTGAATGGGTCG 60.747 63.158 0.00 0.00 36.00 4.79
2343 2659 0.962356 CACACCTGCCTGAATGGGTC 60.962 60.000 0.00 0.00 36.00 4.46
2344 2660 1.075482 CACACCTGCCTGAATGGGT 59.925 57.895 0.00 0.00 36.00 4.51
2345 2661 1.075482 ACACACCTGCCTGAATGGG 59.925 57.895 0.00 0.00 36.00 4.00
2346 2662 0.538057 ACACACACCTGCCTGAATGG 60.538 55.000 0.00 0.00 39.35 3.16
2347 2663 0.594602 CACACACACCTGCCTGAATG 59.405 55.000 0.00 0.00 0.00 2.67
2348 2664 0.183492 ACACACACACCTGCCTGAAT 59.817 50.000 0.00 0.00 0.00 2.57
2349 2665 0.463654 GACACACACACCTGCCTGAA 60.464 55.000 0.00 0.00 0.00 3.02
2350 2666 1.146041 GACACACACACCTGCCTGA 59.854 57.895 0.00 0.00 0.00 3.86
2351 2667 0.535780 ATGACACACACACCTGCCTG 60.536 55.000 0.00 0.00 0.00 4.85
2352 2668 0.535780 CATGACACACACACCTGCCT 60.536 55.000 0.00 0.00 0.00 4.75
2353 2669 0.819259 ACATGACACACACACCTGCC 60.819 55.000 0.00 0.00 0.00 4.85
2354 2670 0.588252 GACATGACACACACACCTGC 59.412 55.000 0.00 0.00 0.00 4.85
2355 2671 0.861185 CGACATGACACACACACCTG 59.139 55.000 0.00 0.00 0.00 4.00
2356 2672 0.249868 CCGACATGACACACACACCT 60.250 55.000 0.00 0.00 0.00 4.00
2357 2673 0.249699 TCCGACATGACACACACACC 60.250 55.000 0.00 0.00 0.00 4.16
2358 2674 0.859232 GTCCGACATGACACACACAC 59.141 55.000 0.00 0.00 35.29 3.82
2359 2675 0.249699 GGTCCGACATGACACACACA 60.250 55.000 0.00 0.00 36.97 3.72
2360 2676 0.249699 TGGTCCGACATGACACACAC 60.250 55.000 0.00 0.00 36.97 3.82
2361 2677 0.033366 CTGGTCCGACATGACACACA 59.967 55.000 0.00 0.00 36.97 3.72
2362 2678 0.317160 TCTGGTCCGACATGACACAC 59.683 55.000 0.00 0.00 36.97 3.82
2363 2679 0.317160 GTCTGGTCCGACATGACACA 59.683 55.000 0.00 0.00 36.97 3.72
2364 2680 0.732880 CGTCTGGTCCGACATGACAC 60.733 60.000 17.53 0.00 36.97 3.67
2365 2681 1.584495 CGTCTGGTCCGACATGACA 59.416 57.895 17.53 1.05 36.97 3.58
2370 2686 2.114625 AGTCCGTCTGGTCCGACA 59.885 61.111 12.36 0.00 36.30 4.35
2371 2687 2.567049 CAGTCCGTCTGGTCCGAC 59.433 66.667 4.37 4.37 40.23 4.79
2383 2699 4.254492 GGAATTTGTAGTGAGTCCAGTCC 58.746 47.826 0.00 0.00 0.00 3.85
2390 2706 9.167311 GTCAATTAGATGGAATTTGTAGTGAGT 57.833 33.333 0.00 0.00 0.00 3.41
2391 2707 8.616076 GGTCAATTAGATGGAATTTGTAGTGAG 58.384 37.037 0.00 0.00 0.00 3.51
2392 2708 8.106462 TGGTCAATTAGATGGAATTTGTAGTGA 58.894 33.333 0.00 0.00 0.00 3.41
2396 2712 8.877864 ACTTGGTCAATTAGATGGAATTTGTA 57.122 30.769 0.00 0.00 0.00 2.41
2404 2720 3.871594 GACGGACTTGGTCAATTAGATGG 59.128 47.826 0.14 0.00 33.68 3.51
2405 2721 4.503910 TGACGGACTTGGTCAATTAGATG 58.496 43.478 0.14 0.00 41.17 2.90
2406 2722 4.819105 TGACGGACTTGGTCAATTAGAT 57.181 40.909 0.14 0.00 41.17 1.98
2407 2723 4.610605 TTGACGGACTTGGTCAATTAGA 57.389 40.909 3.44 0.00 46.33 2.10
2413 2729 2.158740 TGGATTTTGACGGACTTGGTCA 60.159 45.455 0.14 0.00 42.31 4.02
2414 2730 2.500229 TGGATTTTGACGGACTTGGTC 58.500 47.619 0.00 0.00 34.99 4.02
2491 2807 2.031944 CGCAGATGATGGAGCAAGAATG 60.032 50.000 0.00 0.00 0.00 2.67
2492 2808 2.219458 CGCAGATGATGGAGCAAGAAT 58.781 47.619 0.00 0.00 0.00 2.40
2493 2809 1.065926 ACGCAGATGATGGAGCAAGAA 60.066 47.619 0.00 0.00 0.00 2.52
2494 2810 0.538584 ACGCAGATGATGGAGCAAGA 59.461 50.000 0.00 0.00 0.00 3.02
2495 2811 0.935898 GACGCAGATGATGGAGCAAG 59.064 55.000 0.00 0.00 0.00 4.01
2496 2812 0.807275 CGACGCAGATGATGGAGCAA 60.807 55.000 0.00 0.00 0.00 3.91
2497 2813 1.227060 CGACGCAGATGATGGAGCA 60.227 57.895 0.00 0.00 0.00 4.26
2498 2814 2.593134 GCGACGCAGATGATGGAGC 61.593 63.158 16.42 0.00 0.00 4.70
2499 2815 1.953138 GGCGACGCAGATGATGGAG 60.953 63.158 23.09 0.00 0.00 3.86
2500 2816 2.106938 GGCGACGCAGATGATGGA 59.893 61.111 23.09 0.00 0.00 3.41
2501 2817 2.087462 TAGGGCGACGCAGATGATGG 62.087 60.000 23.09 0.00 0.00 3.51
2502 2818 0.665670 CTAGGGCGACGCAGATGATG 60.666 60.000 23.09 0.72 0.00 3.07
2511 2827 0.999406 CAACAACATCTAGGGCGACG 59.001 55.000 0.00 0.00 0.00 5.12
2540 2856 1.069765 ATCCATAGCGGCGGTTGAG 59.930 57.895 19.60 7.54 33.14 3.02
2541 2857 1.227527 CATCCATAGCGGCGGTTGA 60.228 57.895 19.60 12.44 33.14 3.18
2542 2858 1.095228 AACATCCATAGCGGCGGTTG 61.095 55.000 19.60 11.84 31.80 3.77
2543 2859 1.095228 CAACATCCATAGCGGCGGTT 61.095 55.000 19.60 2.00 32.79 4.44
2544 2860 1.523711 CAACATCCATAGCGGCGGT 60.524 57.895 18.21 18.21 33.14 5.68
2545 2861 2.896801 GCAACATCCATAGCGGCGG 61.897 63.158 9.78 0.00 33.14 6.13
2546 2862 2.633657 GCAACATCCATAGCGGCG 59.366 61.111 0.51 0.51 33.14 6.46
2547 2863 1.510480 GAGGCAACATCCATAGCGGC 61.510 60.000 0.00 0.00 41.41 6.53
2548 2864 1.224069 CGAGGCAACATCCATAGCGG 61.224 60.000 0.00 0.00 41.41 5.52
2549 2865 1.224069 CCGAGGCAACATCCATAGCG 61.224 60.000 0.00 0.00 41.41 4.26
2552 2868 1.412710 GACTCCGAGGCAACATCCATA 59.587 52.381 0.00 0.00 41.41 2.74
2575 2891 3.612247 CTCAACAGGAGCCCCACGG 62.612 68.421 0.00 0.00 36.69 4.94
2576 2892 2.046892 CTCAACAGGAGCCCCACG 60.047 66.667 0.00 0.00 36.69 4.94
2591 2907 9.032420 GCGGCTTATACAAATAGTTATATCCTC 57.968 37.037 0.00 0.00 0.00 3.71
2592 2908 7.985752 GGCGGCTTATACAAATAGTTATATCCT 59.014 37.037 0.00 0.00 0.00 3.24
2593 2909 7.226128 GGGCGGCTTATACAAATAGTTATATCC 59.774 40.741 9.56 0.00 0.00 2.59
2594 2910 7.767198 TGGGCGGCTTATACAAATAGTTATATC 59.233 37.037 9.56 0.00 0.00 1.63
2595 2911 7.626390 TGGGCGGCTTATACAAATAGTTATAT 58.374 34.615 9.56 0.00 0.00 0.86
2596 2912 7.006865 TGGGCGGCTTATACAAATAGTTATA 57.993 36.000 9.56 0.00 0.00 0.98
2597 2913 5.871834 TGGGCGGCTTATACAAATAGTTAT 58.128 37.500 9.56 0.00 0.00 1.89
2598 2914 5.293319 TGGGCGGCTTATACAAATAGTTA 57.707 39.130 9.56 0.00 0.00 2.24
2599 2915 4.134563 CTGGGCGGCTTATACAAATAGTT 58.865 43.478 9.56 0.00 0.00 2.24
2600 2916 3.496160 CCTGGGCGGCTTATACAAATAGT 60.496 47.826 9.56 0.00 0.00 2.12
2601 2917 3.074412 CCTGGGCGGCTTATACAAATAG 58.926 50.000 9.56 0.00 0.00 1.73
2602 2918 2.706723 TCCTGGGCGGCTTATACAAATA 59.293 45.455 9.56 0.00 0.00 1.40
2603 2919 1.493022 TCCTGGGCGGCTTATACAAAT 59.507 47.619 9.56 0.00 0.00 2.32
2604 2920 0.913205 TCCTGGGCGGCTTATACAAA 59.087 50.000 9.56 0.00 0.00 2.83
2605 2921 0.468226 CTCCTGGGCGGCTTATACAA 59.532 55.000 9.56 0.00 0.00 2.41
2606 2922 1.407656 CCTCCTGGGCGGCTTATACA 61.408 60.000 9.56 0.00 0.00 2.29
2607 2923 1.371558 CCTCCTGGGCGGCTTATAC 59.628 63.158 9.56 0.00 0.00 1.47
2608 2924 3.885814 CCTCCTGGGCGGCTTATA 58.114 61.111 9.56 0.00 0.00 0.98
2619 2935 3.793888 GTAACCCGGCCCCTCCTG 61.794 72.222 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.