Multiple sequence alignment - TraesCS3B01G378200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G378200 chr3B 100.000 3887 0 0 1 3887 596413713 596409827 0.000000e+00 7179
1 TraesCS3B01G378200 chr3B 88.038 953 71 20 2537 3477 737563524 737562603 0.000000e+00 1088
2 TraesCS3B01G378200 chr3B 84.945 631 50 23 2857 3474 688176794 688177392 7.190000e-167 597
3 TraesCS3B01G378200 chr3B 84.603 630 54 21 2857 3474 688161174 688161772 1.560000e-163 586
4 TraesCS3B01G378200 chr3B 92.651 381 23 2 2531 2910 688159038 688159414 9.500000e-151 544
5 TraesCS3B01G378200 chr3B 83.505 291 16 18 3576 3850 688161825 688162099 3.880000e-60 243
6 TraesCS3B01G378200 chr3B 80.997 321 18 23 3594 3887 737561835 737561531 8.460000e-52 215
7 TraesCS3B01G378200 chr3D 94.258 3657 146 34 250 3887 453986338 453982727 0.000000e+00 5531
8 TraesCS3B01G378200 chr3D 90.860 2057 112 27 838 2882 1993368 1991376 0.000000e+00 2687
9 TraesCS3B01G378200 chr3A 90.918 3953 174 66 1 3863 595935509 595931652 0.000000e+00 5140
10 TraesCS3B01G378200 chr7A 93.355 903 45 10 876 1770 465714 464819 0.000000e+00 1321
11 TraesCS3B01G378200 chr7A 86.740 905 59 19 1914 2809 464735 463883 0.000000e+00 950
12 TraesCS3B01G378200 chr7A 89.216 102 10 1 3366 3467 463772 463672 4.080000e-25 126
13 TraesCS3B01G378200 chr5B 88.285 956 68 22 2531 3474 610348525 610349448 0.000000e+00 1105
14 TraesCS3B01G378200 chr5B 81.711 339 19 20 3576 3887 610349500 610349822 3.880000e-60 243
15 TraesCS3B01G378200 chr1A 83.292 802 122 10 1003 1801 494024276 494025068 0.000000e+00 728
16 TraesCS3B01G378200 chr1A 83.375 397 58 7 2400 2795 494025546 494025935 1.030000e-95 361
17 TraesCS3B01G378200 chr1B 82.463 804 129 10 1001 1801 531535314 531536108 0.000000e+00 693
18 TraesCS3B01G378200 chr1B 82.620 397 61 7 2400 2795 531536581 531536970 1.030000e-90 344
19 TraesCS3B01G378200 chr1D 82.382 806 126 13 1001 1801 391277857 391277063 0.000000e+00 688
20 TraesCS3B01G378200 chr2D 92.162 370 18 4 995 1362 636085983 636085623 2.680000e-141 512
21 TraesCS3B01G378200 chr2D 84.337 166 3 13 819 963 636086623 636086460 1.460000e-29 141
22 TraesCS3B01G378200 chrUn 91.576 368 18 3 995 1362 357706552 357706906 2.700000e-136 496
23 TraesCS3B01G378200 chrUn 91.033 368 24 2 995 1362 354266467 354266825 4.510000e-134 488
24 TraesCS3B01G378200 chrUn 94.071 253 15 0 1110 1362 247902077 247902329 6.090000e-103 385


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G378200 chr3B 596409827 596413713 3886 True 7179.000000 7179 100.000000 1 3887 1 chr3B.!!$R1 3886
1 TraesCS3B01G378200 chr3B 737561531 737563524 1993 True 651.500000 1088 84.517500 2537 3887 2 chr3B.!!$R2 1350
2 TraesCS3B01G378200 chr3B 688176794 688177392 598 False 597.000000 597 84.945000 2857 3474 1 chr3B.!!$F1 617
3 TraesCS3B01G378200 chr3B 688159038 688162099 3061 False 457.666667 586 86.919667 2531 3850 3 chr3B.!!$F2 1319
4 TraesCS3B01G378200 chr3D 453982727 453986338 3611 True 5531.000000 5531 94.258000 250 3887 1 chr3D.!!$R2 3637
5 TraesCS3B01G378200 chr3D 1991376 1993368 1992 True 2687.000000 2687 90.860000 838 2882 1 chr3D.!!$R1 2044
6 TraesCS3B01G378200 chr3A 595931652 595935509 3857 True 5140.000000 5140 90.918000 1 3863 1 chr3A.!!$R1 3862
7 TraesCS3B01G378200 chr7A 463672 465714 2042 True 799.000000 1321 89.770333 876 3467 3 chr7A.!!$R1 2591
8 TraesCS3B01G378200 chr5B 610348525 610349822 1297 False 674.000000 1105 84.998000 2531 3887 2 chr5B.!!$F1 1356
9 TraesCS3B01G378200 chr1A 494024276 494025935 1659 False 544.500000 728 83.333500 1003 2795 2 chr1A.!!$F1 1792
10 TraesCS3B01G378200 chr1B 531535314 531536970 1656 False 518.500000 693 82.541500 1001 2795 2 chr1B.!!$F1 1794
11 TraesCS3B01G378200 chr1D 391277063 391277857 794 True 688.000000 688 82.382000 1001 1801 1 chr1D.!!$R1 800
12 TraesCS3B01G378200 chr2D 636085623 636086623 1000 True 326.500000 512 88.249500 819 1362 2 chr2D.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 717 0.315886 ATCGGCGTGACAGTTACACA 59.684 50.0 6.85 0.0 38.04 3.72 F
992 1042 0.470766 TACCGCTCTCCTCTCCTCTC 59.529 60.0 0.00 0.0 0.00 3.20 F
2171 2697 1.013596 TCTTTCCACACACACTTGCG 58.986 50.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 2105 0.821517 ACATGACGAGGAATGCCGTA 59.178 50.0 0.00 0.00 39.30 4.02 R
2853 3401 0.595310 GAGCGCCTAGGAAGTTAGCG 60.595 60.0 14.75 8.01 0.00 4.26 R
3176 5563 0.527565 CCCACATGCTGGCACTAAAC 59.472 55.0 8.37 0.00 39.01 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.630098 TCATTGCATTTGAAAACGGGGA 59.370 40.909 0.00 0.00 0.00 4.81
40 41 2.630098 TGCATTTGAAAACGGGGATGAA 59.370 40.909 0.00 0.00 0.00 2.57
131 132 2.159819 CTCCGTCGCCCTCCCATATG 62.160 65.000 0.00 0.00 0.00 1.78
135 136 1.152631 TCGCCCTCCCATATGTCGA 60.153 57.895 1.24 0.00 0.00 4.20
150 151 0.505655 GTCGAACGAAACTGAACCCG 59.494 55.000 0.00 0.00 0.00 5.28
245 254 1.135689 CAAACGAGGCAGGTATTGTGC 60.136 52.381 0.00 0.00 40.42 4.57
252 261 5.103000 CGAGGCAGGTATTGTGCTATATAC 58.897 45.833 0.00 0.00 40.97 1.47
284 300 0.875059 CCAAGAAGGACGAAGCCAAC 59.125 55.000 0.00 0.00 41.22 3.77
286 302 0.472471 AAGAAGGACGAAGCCAACCA 59.528 50.000 0.00 0.00 0.00 3.67
300 316 0.958091 CAACCACGCAATCTTGGGAA 59.042 50.000 13.19 0.00 43.04 3.97
348 364 1.597302 CGGAGGTCGATCTCGGCTA 60.597 63.158 19.17 0.00 44.45 3.93
426 450 2.045926 GACGTCTTGGCTGGCCAT 60.046 61.111 15.41 0.00 46.64 4.40
453 477 2.266055 GAACCCTGCAGTCTCCCG 59.734 66.667 13.81 0.00 0.00 5.14
517 541 4.292178 GGCCAGGAGCTCGATCCG 62.292 72.222 7.83 0.00 44.65 4.18
587 611 1.148949 TCAGCTTGGAACAGCAGCA 59.851 52.632 0.00 0.00 43.98 4.41
693 717 0.315886 ATCGGCGTGACAGTTACACA 59.684 50.000 6.85 0.00 38.04 3.72
917 954 4.993905 GCCACGGGCCATAATAATTATTC 58.006 43.478 13.95 0.48 44.06 1.75
989 1039 1.153127 CGTACCGCTCTCCTCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
992 1042 0.470766 TACCGCTCTCCTCTCCTCTC 59.529 60.000 0.00 0.00 0.00 3.20
1218 1715 3.155167 CTCTACGTGCCCCTCCCC 61.155 72.222 0.00 0.00 0.00 4.81
1287 1784 2.530701 CAGTACCTCTTCCTGGACAGT 58.469 52.381 0.00 0.00 0.00 3.55
1608 2105 1.323271 ACTCCATGTCGAGCACGGAT 61.323 55.000 3.11 0.00 38.92 4.18
2019 2543 3.604582 CCTGGTCTTCCTCAACAATCTC 58.395 50.000 0.00 0.00 34.23 2.75
2171 2697 1.013596 TCTTTCCACACACACTTGCG 58.986 50.000 0.00 0.00 0.00 4.85
2213 2739 1.275291 TCGTCTGATTGGTCCCTTGAC 59.725 52.381 0.00 0.00 40.98 3.18
2381 2929 2.096013 GGAAACAGCGGCTAACTGAATC 59.904 50.000 0.26 0.00 38.55 2.52
2382 2930 2.770164 AACAGCGGCTAACTGAATCT 57.230 45.000 0.26 0.00 38.55 2.40
2383 2931 2.015736 ACAGCGGCTAACTGAATCTG 57.984 50.000 0.26 0.00 38.55 2.90
2484 3032 1.954258 GCCTTCTTCCTGCTGCTCAAT 60.954 52.381 0.00 0.00 0.00 2.57
2853 3401 3.782244 CAGTGGCTGTCGCGCTTC 61.782 66.667 5.56 0.00 36.88 3.86
3176 5563 8.230472 ACTATAAATGCTTCTTCATTTCCTGG 57.770 34.615 5.16 0.00 43.36 4.45
3193 5580 1.200716 CTGGTTTAGTGCCAGCATGTG 59.799 52.381 0.00 0.00 45.72 3.21
3212 5599 1.553248 TGGGAGTATTGACGTTGGGAG 59.447 52.381 0.00 0.00 0.00 4.30
3298 5691 5.680619 TGCCCTGTTTAGACTTGTATATGG 58.319 41.667 0.00 0.00 0.00 2.74
3346 5739 9.809096 ATTCTACTACTGATTGATTGTGTAGTG 57.191 33.333 12.53 5.16 42.26 2.74
3430 5835 0.671796 CATGTACGGGCGATGGAGTA 59.328 55.000 0.00 0.00 0.00 2.59
3452 5857 1.445582 GCTTGTAGTGGACCGTCCG 60.446 63.158 13.02 0.00 40.17 4.79
3467 5872 2.031683 CCGTCCGAATTCCAGTAATTGC 59.968 50.000 0.00 0.00 37.93 3.56
3475 5880 5.067153 CGAATTCCAGTAATTGCCCATAACA 59.933 40.000 0.00 0.00 37.93 2.41
3479 5884 6.463995 TCCAGTAATTGCCCATAACAATTC 57.536 37.500 5.09 0.00 44.45 2.17
3490 5896 5.681179 GCCCATAACAATTCCGCAAAGTATT 60.681 40.000 0.00 0.00 0.00 1.89
3534 5954 4.105697 AGTTATCAAGGAAAACCCACCAGA 59.894 41.667 0.00 0.00 37.41 3.86
3550 5970 5.454755 CCCACCAGACCGTATTCTTATGATT 60.455 44.000 0.00 0.00 0.00 2.57
3624 6753 6.425577 GTAGATGACGAAACAGTAGAGTCT 57.574 41.667 0.00 0.00 33.40 3.24
3625 6754 5.303747 AGATGACGAAACAGTAGAGTCTG 57.696 43.478 1.86 0.00 40.80 3.51
3626 6755 3.917329 TGACGAAACAGTAGAGTCTGG 57.083 47.619 1.86 0.00 39.48 3.86
3628 6757 1.068472 ACGAAACAGTAGAGTCTGGCG 60.068 52.381 1.86 0.00 39.48 5.69
3629 6758 1.351153 GAAACAGTAGAGTCTGGCGC 58.649 55.000 1.86 0.00 39.48 6.53
3631 6760 0.528470 AACAGTAGAGTCTGGCGCTC 59.472 55.000 7.64 0.00 39.48 5.03
3632 6761 0.609406 ACAGTAGAGTCTGGCGCTCA 60.609 55.000 7.64 2.39 39.48 4.26
3633 6762 0.528017 CAGTAGAGTCTGGCGCTCAA 59.472 55.000 7.64 0.00 35.55 3.02
3634 6763 1.067565 CAGTAGAGTCTGGCGCTCAAA 60.068 52.381 7.64 0.00 35.55 2.69
3636 6765 2.234908 AGTAGAGTCTGGCGCTCAAAAT 59.765 45.455 7.64 0.00 35.55 1.82
3640 6769 3.686726 AGAGTCTGGCGCTCAAAATTAAG 59.313 43.478 7.64 0.00 35.55 1.85
3851 7001 1.609208 ACTGAAACATGGCACCACTC 58.391 50.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.630098 TCATCCCCGTTTTCAAATGCAA 59.370 40.909 0.00 0.00 0.00 4.08
36 37 0.103208 GCCACTCGGATCGACTTCAT 59.897 55.000 0.00 0.00 0.00 2.57
113 114 2.200370 ATATGGGAGGGCGACGGA 59.800 61.111 0.00 0.00 0.00 4.69
131 132 0.505655 CGGGTTCAGTTTCGTTCGAC 59.494 55.000 0.00 0.00 0.00 4.20
135 136 1.861971 GAGTCGGGTTCAGTTTCGTT 58.138 50.000 0.00 0.00 0.00 3.85
169 170 2.353704 CGTATGTATGGCATGGTCGGAT 60.354 50.000 10.98 0.00 38.47 4.18
170 171 1.000394 CGTATGTATGGCATGGTCGGA 60.000 52.381 10.98 0.00 38.47 4.55
171 172 1.270094 ACGTATGTATGGCATGGTCGG 60.270 52.381 10.98 0.00 38.47 4.79
172 173 1.792367 CACGTATGTATGGCATGGTCG 59.208 52.381 10.98 9.99 38.47 4.79
173 174 3.106242 TCACGTATGTATGGCATGGTC 57.894 47.619 10.98 1.30 38.47 4.02
174 175 3.769739 ATCACGTATGTATGGCATGGT 57.230 42.857 10.98 0.00 38.47 3.55
179 188 1.647213 CGCGTATCACGTATGTATGGC 59.353 52.381 0.00 0.00 44.73 4.40
230 239 5.103000 CGTATATAGCACAATACCTGCCTC 58.897 45.833 0.00 0.00 35.01 4.70
284 300 1.200020 GAAGTTCCCAAGATTGCGTGG 59.800 52.381 0.00 0.00 42.49 4.94
286 302 1.202879 TGGAAGTTCCCAAGATTGCGT 60.203 47.619 19.42 0.00 35.03 5.24
300 316 1.301479 GTCGGCGGAACTTGGAAGT 60.301 57.895 7.21 0.00 42.04 3.01
348 364 1.153901 AAACACGACGATCGCCGAT 60.154 52.632 30.16 14.60 45.12 4.18
426 450 4.009675 GACTGCAGGGTTCACAATTCATA 58.990 43.478 19.93 0.00 0.00 2.15
517 541 2.032681 GGCGGATGACCTATGGCC 59.967 66.667 0.00 0.00 33.32 5.36
587 611 2.352032 GGCGAGACACCTGGTAGCT 61.352 63.158 0.00 0.00 0.00 3.32
590 614 3.755628 GCGGCGAGACACCTGGTA 61.756 66.667 12.98 0.00 0.00 3.25
693 717 3.790437 CAGAGTGCCAGGGCCGAT 61.790 66.667 8.02 0.00 41.09 4.18
803 827 4.142469 GCTGTAAATCACCGGCAATTAAGT 60.142 41.667 0.00 0.00 0.00 2.24
910 940 2.171448 AGGCACTGGAGCTCGAATAATT 59.829 45.455 7.83 0.00 37.18 1.40
916 953 3.071206 GGAGGCACTGGAGCTCGA 61.071 66.667 7.83 2.19 41.55 4.04
917 954 2.947532 TTGGAGGCACTGGAGCTCG 61.948 63.158 7.83 0.00 41.55 5.03
957 1003 1.577922 GTACGTGCTCTGTCGTCCA 59.422 57.895 0.00 0.00 40.70 4.02
989 1039 2.437895 ACGACATCGCCGAGGAGA 60.438 61.111 5.50 0.00 44.43 3.71
1287 1784 4.020617 CAGCACTTGAGCCCGGGA 62.021 66.667 29.31 0.00 34.23 5.14
1608 2105 0.821517 ACATGACGAGGAATGCCGTA 59.178 50.000 0.00 0.00 39.30 4.02
1873 2394 2.032620 GGCGATCTCTTCCTCCTTGTA 58.967 52.381 0.00 0.00 0.00 2.41
2019 2543 1.874019 CGACTCGGCAATCTGTCCG 60.874 63.158 0.00 0.00 46.52 4.79
2213 2739 3.817709 GAGGGAGACTCCAAGAAGATG 57.182 52.381 23.06 0.00 40.49 2.90
2381 2929 1.067283 TGCACCACAAACCAACAACAG 60.067 47.619 0.00 0.00 0.00 3.16
2382 2930 0.969149 TGCACCACAAACCAACAACA 59.031 45.000 0.00 0.00 0.00 3.33
2383 2931 1.203523 TCTGCACCACAAACCAACAAC 59.796 47.619 0.00 0.00 0.00 3.32
2853 3401 0.595310 GAGCGCCTAGGAAGTTAGCG 60.595 60.000 14.75 8.01 0.00 4.26
2909 5271 7.280876 GTGTCTCCTAAGTTAATCAATCATGCA 59.719 37.037 0.00 0.00 0.00 3.96
2911 5273 7.706607 TCGTGTCTCCTAAGTTAATCAATCATG 59.293 37.037 0.00 0.00 0.00 3.07
2912 5274 7.782049 TCGTGTCTCCTAAGTTAATCAATCAT 58.218 34.615 0.00 0.00 0.00 2.45
3030 5398 3.771479 TCAGTCCAGCTTGATCTGTGTAT 59.229 43.478 13.33 0.00 32.32 2.29
3152 5525 8.230472 ACCAGGAAATGAAGAAGCATTTATAG 57.770 34.615 0.00 0.00 45.63 1.31
3153 5526 8.593945 AACCAGGAAATGAAGAAGCATTTATA 57.406 30.769 0.00 0.00 45.63 0.98
3154 5527 7.486407 AACCAGGAAATGAAGAAGCATTTAT 57.514 32.000 0.00 0.00 45.63 1.40
3155 5528 6.916360 AACCAGGAAATGAAGAAGCATTTA 57.084 33.333 0.00 0.00 45.63 1.40
3176 5563 0.527565 CCCACATGCTGGCACTAAAC 59.472 55.000 8.37 0.00 39.01 2.01
3193 5580 1.134491 CCTCCCAACGTCAATACTCCC 60.134 57.143 0.00 0.00 0.00 4.30
3212 5599 3.084786 AGGTACGTACACTACTCCAACC 58.915 50.000 26.02 7.80 0.00 3.77
3298 5691 8.173130 AGAATTCCACGTTCGTAATTAATCAAC 58.827 33.333 0.65 0.00 0.00 3.18
3384 5785 4.262592 GGATGTGCCCAACAGATTCTTTTT 60.263 41.667 0.00 0.00 43.64 1.94
3385 5786 3.259123 GGATGTGCCCAACAGATTCTTTT 59.741 43.478 0.00 0.00 43.64 2.27
3386 5787 2.827921 GGATGTGCCCAACAGATTCTTT 59.172 45.455 0.00 0.00 43.64 2.52
3387 5788 2.450476 GGATGTGCCCAACAGATTCTT 58.550 47.619 0.00 0.00 43.64 2.52
3388 5789 1.679944 CGGATGTGCCCAACAGATTCT 60.680 52.381 0.00 0.00 43.64 2.40
3419 5824 2.084546 ACAAGCTTTTACTCCATCGCC 58.915 47.619 0.00 0.00 0.00 5.54
3430 5835 2.490991 GACGGTCCACTACAAGCTTTT 58.509 47.619 0.00 0.00 0.00 2.27
3452 5857 6.463995 TGTTATGGGCAATTACTGGAATTC 57.536 37.500 0.00 0.00 35.45 2.17
3467 5872 3.866883 ACTTTGCGGAATTGTTATGGG 57.133 42.857 0.00 0.00 0.00 4.00
3475 5880 7.923878 ACTTACAAACAAATACTTTGCGGAATT 59.076 29.630 0.00 0.00 44.39 2.17
3479 5884 7.149031 GCTAACTTACAAACAAATACTTTGCGG 60.149 37.037 0.00 0.00 44.39 5.69
3490 5896 6.425577 ACTTTCGTGCTAACTTACAAACAA 57.574 33.333 0.00 0.00 0.00 2.83
3495 5901 7.117236 CCTTGATAACTTTCGTGCTAACTTACA 59.883 37.037 0.00 0.00 0.00 2.41
3566 5988 9.550811 GTCACCATTTTTCTACCGTTTTATTAG 57.449 33.333 0.00 0.00 0.00 1.73
3567 5989 8.229137 CGTCACCATTTTTCTACCGTTTTATTA 58.771 33.333 0.00 0.00 0.00 0.98
3571 5996 4.575645 TCGTCACCATTTTTCTACCGTTTT 59.424 37.500 0.00 0.00 0.00 2.43
3617 6746 3.334583 AATTTTGAGCGCCAGACTCTA 57.665 42.857 2.29 0.00 35.12 2.43
3618 6747 2.191128 AATTTTGAGCGCCAGACTCT 57.809 45.000 2.29 0.00 35.12 3.24
3619 6748 3.181506 CCTTAATTTTGAGCGCCAGACTC 60.182 47.826 2.29 0.00 34.62 3.36
3620 6749 2.749621 CCTTAATTTTGAGCGCCAGACT 59.250 45.455 2.29 0.00 0.00 3.24
3621 6750 2.747446 TCCTTAATTTTGAGCGCCAGAC 59.253 45.455 2.29 0.00 0.00 3.51
3622 6751 3.066291 TCCTTAATTTTGAGCGCCAGA 57.934 42.857 2.29 0.00 0.00 3.86
3623 6752 3.848272 TTCCTTAATTTTGAGCGCCAG 57.152 42.857 2.29 0.00 0.00 4.85
3624 6753 4.592485 TTTTCCTTAATTTTGAGCGCCA 57.408 36.364 2.29 0.00 0.00 5.69
3625 6754 5.869344 AGAATTTTCCTTAATTTTGAGCGCC 59.131 36.000 2.29 0.00 0.00 6.53
3626 6755 6.951256 AGAATTTTCCTTAATTTTGAGCGC 57.049 33.333 0.00 0.00 0.00 5.92
3636 6765 8.109634 AGCCATCAAGTCTAGAATTTTCCTTAA 58.890 33.333 1.94 0.00 0.00 1.85
3640 6769 5.298026 GGAGCCATCAAGTCTAGAATTTTCC 59.702 44.000 1.94 1.10 0.00 3.13
3837 6987 1.999648 AATGTGAGTGGTGCCATGTT 58.000 45.000 0.00 0.00 0.00 2.71
3838 6988 1.999648 AAATGTGAGTGGTGCCATGT 58.000 45.000 0.00 0.00 0.00 3.21
3851 7001 7.463469 TCATGCGTGTAGATAGTAAAATGTG 57.537 36.000 5.68 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.