Multiple sequence alignment - TraesCS3B01G378100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G378100 chr3B 100.000 3287 0 0 1 3287 596046471 596049757 0.000000e+00 6071
1 TraesCS3B01G378100 chr3B 95.608 296 13 0 2583 2878 73260684 73260979 2.970000e-130 475
2 TraesCS3B01G378100 chr3D 93.704 2557 101 23 66 2584 453628289 453630823 0.000000e+00 3775
3 TraesCS3B01G378100 chr3D 94.686 414 19 2 2877 3287 453630822 453631235 9.950000e-180 640
4 TraesCS3B01G378100 chr3D 87.061 456 54 5 1 453 296836033 296836486 8.140000e-141 510
5 TraesCS3B01G378100 chr3A 93.461 1774 54 21 797 2524 595643760 595645517 0.000000e+00 2577
6 TraesCS3B01G378100 chr3A 95.146 412 13 4 2877 3287 595645558 595645963 0.000000e+00 643
7 TraesCS3B01G378100 chr7D 87.473 455 51 6 1 453 424720453 424720903 1.350000e-143 520
8 TraesCS3B01G378100 chr7D 87.202 461 49 10 1 453 469254826 469255284 1.750000e-142 516
9 TraesCS3B01G378100 chr7D 86.889 450 53 5 5 453 276128528 276128084 1.760000e-137 499
10 TraesCS3B01G378100 chr1D 87.061 456 51 7 1 453 430235309 430235759 2.930000e-140 508
11 TraesCS3B01G378100 chr1D 84.444 180 25 3 1879 2057 109477204 109477027 1.210000e-39 174
12 TraesCS3B01G378100 chr1D 87.162 148 19 0 1606 1753 109478071 109477924 5.640000e-38 169
13 TraesCS3B01G378100 chr1D 84.932 146 20 2 1610 1754 311750431 311750287 2.640000e-31 147
14 TraesCS3B01G378100 chr7B 86.652 457 54 7 1 453 299923618 299923165 1.760000e-137 499
15 TraesCS3B01G378100 chr7B 94.932 296 15 0 2583 2878 126979099 126978804 6.420000e-127 464
16 TraesCS3B01G378100 chr4D 86.593 455 57 4 1 453 116156283 116155831 1.760000e-137 499
17 TraesCS3B01G378100 chr2D 86.593 455 55 6 1 453 483263643 483264093 6.330000e-137 497
18 TraesCS3B01G378100 chr5B 95.270 296 14 0 2583 2878 572272893 572272598 1.380000e-128 470
19 TraesCS3B01G378100 chr4B 95.270 296 14 0 2583 2878 99173526 99173821 1.380000e-128 470
20 TraesCS3B01G378100 chr4B 95.270 296 14 0 2583 2878 432587313 432587608 1.380000e-128 470
21 TraesCS3B01G378100 chr4B 94.932 296 14 1 2583 2878 403819679 403819385 2.310000e-126 462
22 TraesCS3B01G378100 chr2B 95.270 296 14 0 2583 2878 594734878 594734583 1.380000e-128 470
23 TraesCS3B01G378100 chr2B 94.932 296 15 0 2583 2878 394184248 394184543 6.420000e-127 464
24 TraesCS3B01G378100 chr4A 94.595 296 16 0 2583 2878 87402605 87402310 2.990000e-125 459
25 TraesCS3B01G378100 chr1B 87.838 148 18 0 1606 1753 165077397 165077250 1.210000e-39 174
26 TraesCS3B01G378100 chr1B 81.776 214 32 6 1853 2063 165076540 165076331 4.360000e-39 172
27 TraesCS3B01G378100 chr1B 84.932 146 20 2 1610 1754 422346955 422346811 2.640000e-31 147
28 TraesCS3B01G378100 chr1A 81.776 214 32 6 1853 2063 112943081 112942872 4.360000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G378100 chr3B 596046471 596049757 3286 False 6071.0 6071 100.0000 1 3287 1 chr3B.!!$F2 3286
1 TraesCS3B01G378100 chr3D 453628289 453631235 2946 False 2207.5 3775 94.1950 66 3287 2 chr3D.!!$F2 3221
2 TraesCS3B01G378100 chr3A 595643760 595645963 2203 False 1610.0 2577 94.3035 797 3287 2 chr3A.!!$F1 2490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.034616 GATCTGGCCTCCCGATGAAG 59.965 60.0 3.32 0.0 0.0 3.02 F
62 63 0.250295 TGAAGAACAGAAGGTGGCGG 60.250 55.0 0.00 0.0 0.0 6.13 F
725 727 0.459899 GCCGGCTCCCCTTATTTTTG 59.540 55.0 22.15 0.0 0.0 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1438 1478 0.489567 AGTCTCTCCCTGGTGGAAGT 59.510 55.0 0.00 0.00 44.57 3.01 R
2016 2063 0.676782 GCCGGTACCTGTGCTTGAAT 60.677 55.0 10.90 0.00 0.00 2.57 R
2610 2667 0.391228 TCACGGTGCACAGCTTAAGA 59.609 50.0 20.43 5.93 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.770048 CCCTCCGGAGCCCTGAAT 60.770 66.667 26.87 0.00 0.00 2.57
20 21 1.459539 CCCTCCGGAGCCCTGAATA 60.460 63.158 26.87 0.00 0.00 1.75
21 22 1.476007 CCCTCCGGAGCCCTGAATAG 61.476 65.000 26.87 8.74 0.00 1.73
22 23 0.470080 CCTCCGGAGCCCTGAATAGA 60.470 60.000 26.87 0.00 0.00 1.98
23 24 0.676736 CTCCGGAGCCCTGAATAGAC 59.323 60.000 20.67 0.00 0.00 2.59
24 25 0.261991 TCCGGAGCCCTGAATAGACT 59.738 55.000 0.00 0.00 0.00 3.24
25 26 0.676736 CCGGAGCCCTGAATAGACTC 59.323 60.000 0.00 0.00 0.00 3.36
26 27 0.676736 CGGAGCCCTGAATAGACTCC 59.323 60.000 0.00 0.00 40.70 3.85
27 28 1.794714 GGAGCCCTGAATAGACTCCA 58.205 55.000 2.54 0.00 42.27 3.86
28 29 1.691434 GGAGCCCTGAATAGACTCCAG 59.309 57.143 2.54 0.00 42.27 3.86
29 30 2.672098 GAGCCCTGAATAGACTCCAGA 58.328 52.381 0.00 0.00 0.00 3.86
30 31 3.238597 GAGCCCTGAATAGACTCCAGAT 58.761 50.000 0.00 0.00 0.00 2.90
31 32 3.238597 AGCCCTGAATAGACTCCAGATC 58.761 50.000 0.00 0.00 0.00 2.75
32 33 3.116784 AGCCCTGAATAGACTCCAGATCT 60.117 47.826 0.00 0.00 0.00 2.75
33 34 3.006752 GCCCTGAATAGACTCCAGATCTG 59.993 52.174 16.24 16.24 0.00 2.90
42 43 2.444706 CCAGATCTGGCCTCCCGA 60.445 66.667 28.45 0.00 44.73 5.14
43 44 1.840650 CCAGATCTGGCCTCCCGAT 60.841 63.158 28.45 0.26 44.73 4.18
44 45 1.370437 CAGATCTGGCCTCCCGATG 59.630 63.158 15.38 0.00 0.00 3.84
45 46 1.117749 CAGATCTGGCCTCCCGATGA 61.118 60.000 15.38 0.00 0.00 2.92
46 47 0.399091 AGATCTGGCCTCCCGATGAA 60.399 55.000 3.32 0.00 0.00 2.57
47 48 0.034616 GATCTGGCCTCCCGATGAAG 59.965 60.000 3.32 0.00 0.00 3.02
48 49 0.399091 ATCTGGCCTCCCGATGAAGA 60.399 55.000 3.32 0.00 0.00 2.87
49 50 0.617535 TCTGGCCTCCCGATGAAGAA 60.618 55.000 3.32 0.00 0.00 2.52
50 51 0.462759 CTGGCCTCCCGATGAAGAAC 60.463 60.000 3.32 0.00 0.00 3.01
51 52 1.198094 TGGCCTCCCGATGAAGAACA 61.198 55.000 3.32 0.00 0.00 3.18
52 53 0.462759 GGCCTCCCGATGAAGAACAG 60.463 60.000 0.00 0.00 0.00 3.16
53 54 0.537188 GCCTCCCGATGAAGAACAGA 59.463 55.000 0.00 0.00 0.00 3.41
54 55 1.066143 GCCTCCCGATGAAGAACAGAA 60.066 52.381 0.00 0.00 0.00 3.02
55 56 2.898705 CCTCCCGATGAAGAACAGAAG 58.101 52.381 0.00 0.00 0.00 2.85
56 57 2.419297 CCTCCCGATGAAGAACAGAAGG 60.419 54.545 0.00 0.00 0.00 3.46
57 58 2.234908 CTCCCGATGAAGAACAGAAGGT 59.765 50.000 0.00 0.00 0.00 3.50
58 59 2.028112 TCCCGATGAAGAACAGAAGGTG 60.028 50.000 0.00 0.00 0.00 4.00
59 60 2.350522 CCGATGAAGAACAGAAGGTGG 58.649 52.381 0.00 0.00 0.00 4.61
60 61 1.734465 CGATGAAGAACAGAAGGTGGC 59.266 52.381 0.00 0.00 0.00 5.01
61 62 1.734465 GATGAAGAACAGAAGGTGGCG 59.266 52.381 0.00 0.00 0.00 5.69
62 63 0.250295 TGAAGAACAGAAGGTGGCGG 60.250 55.000 0.00 0.00 0.00 6.13
63 64 1.578206 GAAGAACAGAAGGTGGCGGC 61.578 60.000 0.00 0.00 0.00 6.53
64 65 3.423154 GAACAGAAGGTGGCGGCG 61.423 66.667 0.51 0.51 0.00 6.46
105 106 4.938226 GTGGTGAAACTTCCTCTCCTATTG 59.062 45.833 0.00 0.00 36.74 1.90
109 110 6.072452 GGTGAAACTTCCTCTCCTATTGTTTG 60.072 42.308 0.00 0.00 36.74 2.93
119 120 6.071165 CCTCTCCTATTGTTTGCTCCAAAAAT 60.071 38.462 0.00 0.00 35.03 1.82
122 123 7.122650 TCTCCTATTGTTTGCTCCAAAAATAGG 59.877 37.037 23.99 23.99 43.70 2.57
125 126 7.922811 CCTATTGTTTGCTCCAAAAATAGGATC 59.077 37.037 24.70 0.00 44.17 3.36
149 150 7.622713 TCTTATAACGTTGGAATTAGGGTCAA 58.377 34.615 11.99 0.00 0.00 3.18
219 220 3.390521 CGCCCTGGTGCCTAGTGA 61.391 66.667 0.00 0.00 0.00 3.41
229 230 1.451028 GCCTAGTGAGCAGCTTGGG 60.451 63.158 0.00 0.00 31.17 4.12
250 251 2.606587 CCCCTCCAGTGGGTCTTGG 61.607 68.421 9.92 4.40 45.70 3.61
266 267 8.364894 GTGGGTCTTGGTTCAAGTAATTTTTAT 58.635 33.333 7.42 0.00 41.66 1.40
333 334 8.872845 AGAACTTTTATTTCTGCACAAAAACAG 58.127 29.630 0.00 0.00 31.88 3.16
347 348 4.202111 ACAAAAACAGCACCATGGTAGTTC 60.202 41.667 19.28 7.27 0.00 3.01
358 359 4.765339 ACCATGGTAGTTCTGCTAAAAACC 59.235 41.667 18.10 0.00 0.00 3.27
369 370 4.682860 TCTGCTAAAAACCTCGTTAGTTCG 59.317 41.667 0.00 0.00 31.24 3.95
371 372 3.989817 GCTAAAAACCTCGTTAGTTCGGA 59.010 43.478 0.00 0.00 31.24 4.55
375 376 6.716898 AAAAACCTCGTTAGTTCGGATTAG 57.283 37.500 0.00 0.00 0.00 1.73
427 428 8.476925 GTTCAAAATAAGAGCAAAAACGTTAGG 58.523 33.333 0.00 0.00 0.00 2.69
437 438 7.444487 AGAGCAAAAACGTTAGGAAAAGTAGAT 59.556 33.333 0.00 0.00 0.00 1.98
441 442 7.586714 AAAACGTTAGGAAAAGTAGATACGG 57.413 36.000 0.00 0.00 32.54 4.02
461 462 2.159338 GGTGAAGACGTATTAGGCACGA 60.159 50.000 0.00 0.00 41.91 4.35
463 464 2.751259 TGAAGACGTATTAGGCACGACT 59.249 45.455 0.00 0.00 44.12 4.18
491 492 2.252260 CTGCAACGAACCCGCAAG 59.748 61.111 0.00 0.00 39.95 4.01
531 532 2.821685 CCATCCGAATCGAGGGCA 59.178 61.111 3.36 0.00 0.00 5.36
582 583 2.097038 CGGAAGCGACAAGGCAGAG 61.097 63.158 0.00 0.00 34.64 3.35
583 584 1.293498 GGAAGCGACAAGGCAGAGA 59.707 57.895 0.00 0.00 34.64 3.10
645 647 1.690985 GGAGAAGAGGAGGTGGGGG 60.691 68.421 0.00 0.00 0.00 5.40
710 712 3.160047 AGGAGAGCCATCTGCCGG 61.160 66.667 0.00 0.00 44.56 6.13
725 727 0.459899 GCCGGCTCCCCTTATTTTTG 59.540 55.000 22.15 0.00 0.00 2.44
761 763 6.410914 CGCATTTTATGTTAGAACCATCGAAC 59.589 38.462 0.00 0.00 40.40 3.95
775 777 6.583912 ACCATCGAACTATGAATTGTAACG 57.416 37.500 0.00 0.00 0.00 3.18
823 832 5.045872 AGCTTCTTGTTTTCAACAGCATTC 58.954 37.500 0.00 0.00 43.27 2.67
988 1002 1.154035 GTGCATGCTTTACGCCCAC 60.154 57.895 20.33 0.83 38.05 4.61
1077 1107 1.045911 ACTCCCCCTCGCTCTCAATC 61.046 60.000 0.00 0.00 0.00 2.67
1109 1142 2.115911 CCGTCTCTCCGTCTCCCAG 61.116 68.421 0.00 0.00 0.00 4.45
1112 1145 3.522731 CTCTCCGTCTCCCAGGCG 61.523 72.222 0.00 0.00 44.05 5.52
1150 1183 4.145807 CTCTATGTCCACGGAGAGGTAAT 58.854 47.826 0.00 0.00 39.94 1.89
1151 1184 3.889538 TCTATGTCCACGGAGAGGTAATG 59.110 47.826 0.00 0.00 39.94 1.90
1152 1185 2.225382 TGTCCACGGAGAGGTAATGA 57.775 50.000 0.00 0.00 39.94 2.57
1153 1186 2.531771 TGTCCACGGAGAGGTAATGAA 58.468 47.619 0.00 0.00 39.94 2.57
1154 1187 2.496070 TGTCCACGGAGAGGTAATGAAG 59.504 50.000 0.00 0.00 39.94 3.02
1155 1188 2.496470 GTCCACGGAGAGGTAATGAAGT 59.504 50.000 0.00 0.00 39.94 3.01
1198 1232 5.048782 TGCTTCGATGCTTGTACTTGATTTT 60.049 36.000 22.11 0.00 0.00 1.82
1242 1282 8.773645 CCTTTGTTTGTTTTGATTATCCTTTCC 58.226 33.333 0.00 0.00 0.00 3.13
1251 1291 5.630415 TGATTATCCTTTCCGGTCAGAAT 57.370 39.130 0.00 0.00 0.00 2.40
1360 1400 1.526464 GTTCTTGCGGCCACAATTTTG 59.474 47.619 6.66 0.00 0.00 2.44
1429 1469 8.852671 ATTCCATCCAAAATAAACCCTAATGA 57.147 30.769 0.00 0.00 0.00 2.57
1430 1470 8.852671 TTCCATCCAAAATAAACCCTAATGAT 57.147 30.769 0.00 0.00 0.00 2.45
1435 1475 9.942526 ATCCAAAATAAACCCTAATGATCTTCT 57.057 29.630 0.00 0.00 0.00 2.85
1438 1478 9.189156 CAAAATAAACCCTAATGATCTTCTGGA 57.811 33.333 0.00 0.00 0.00 3.86
1535 1581 1.668793 TCGTAGTCGCCGTCTCACA 60.669 57.895 0.00 0.00 36.96 3.58
1866 1913 1.376037 GTTTCAGGAGGTGCCCGAG 60.376 63.158 0.00 0.00 37.37 4.63
1867 1914 3.254024 TTTCAGGAGGTGCCCGAGC 62.254 63.158 0.00 0.00 37.37 5.03
2038 2085 2.214216 AAGCACAGGTACCGGCAGA 61.214 57.895 22.50 0.00 0.00 4.26
2238 2291 2.512515 GGACAGCCATCGAGCACC 60.513 66.667 0.00 0.00 34.23 5.01
2303 2356 4.398988 TGGTTGACATGCATGGATTTACTC 59.601 41.667 29.41 16.41 0.00 2.59
2318 2371 0.454600 TACTCGCGGTTCTGGTGATC 59.545 55.000 6.13 0.00 0.00 2.92
2487 2544 4.158394 TCTGCCCTCATAAATTTCTTGTGC 59.842 41.667 0.00 1.09 0.00 4.57
2503 2560 0.602638 GTGCGTGTCCACTCATCCAA 60.603 55.000 0.00 0.00 33.02 3.53
2527 2584 8.723311 CAATGTGATTGCTTGGTTGATTTAATT 58.277 29.630 0.00 0.00 32.92 1.40
2528 2585 9.941325 AATGTGATTGCTTGGTTGATTTAATTA 57.059 25.926 0.00 0.00 0.00 1.40
2584 2641 7.146648 AGAGCTAACACTTTAACTGACACTAC 58.853 38.462 0.00 0.00 0.00 2.73
2587 2644 7.652507 AGCTAACACTTTAACTGACACTACTTC 59.347 37.037 0.00 0.00 0.00 3.01
2588 2645 7.095732 GCTAACACTTTAACTGACACTACTTCC 60.096 40.741 0.00 0.00 0.00 3.46
2589 2646 6.481434 ACACTTTAACTGACACTACTTCCT 57.519 37.500 0.00 0.00 0.00 3.36
2590 2647 6.514063 ACACTTTAACTGACACTACTTCCTC 58.486 40.000 0.00 0.00 0.00 3.71
2591 2648 5.927115 CACTTTAACTGACACTACTTCCTCC 59.073 44.000 0.00 0.00 0.00 4.30
2592 2649 4.778534 TTAACTGACACTACTTCCTCCG 57.221 45.455 0.00 0.00 0.00 4.63
2593 2650 2.289592 ACTGACACTACTTCCTCCGT 57.710 50.000 0.00 0.00 0.00 4.69
2594 2651 2.161030 ACTGACACTACTTCCTCCGTC 58.839 52.381 0.00 0.00 0.00 4.79
2595 2652 2.224818 ACTGACACTACTTCCTCCGTCT 60.225 50.000 0.00 0.00 0.00 4.18
2596 2653 3.008813 ACTGACACTACTTCCTCCGTCTA 59.991 47.826 0.00 0.00 0.00 2.59
2597 2654 3.607741 TGACACTACTTCCTCCGTCTAG 58.392 50.000 0.00 0.00 0.00 2.43
2598 2655 2.944349 GACACTACTTCCTCCGTCTAGG 59.056 54.545 0.00 0.00 42.97 3.02
2599 2656 2.308275 ACACTACTTCCTCCGTCTAGGT 59.692 50.000 0.00 0.00 41.99 3.08
2600 2657 2.683867 CACTACTTCCTCCGTCTAGGTG 59.316 54.545 0.00 0.00 41.99 4.00
2601 2658 2.575279 ACTACTTCCTCCGTCTAGGTGA 59.425 50.000 0.00 0.00 41.99 4.02
2602 2659 2.131776 ACTTCCTCCGTCTAGGTGAG 57.868 55.000 0.00 0.00 41.99 3.51
2603 2660 1.355043 ACTTCCTCCGTCTAGGTGAGT 59.645 52.381 0.00 0.00 41.99 3.41
2604 2661 2.575279 ACTTCCTCCGTCTAGGTGAGTA 59.425 50.000 0.00 0.00 41.99 2.59
2605 2662 3.009916 ACTTCCTCCGTCTAGGTGAGTAA 59.990 47.826 0.00 0.00 41.99 2.24
2606 2663 3.278668 TCCTCCGTCTAGGTGAGTAAG 57.721 52.381 0.00 0.00 41.99 2.34
2607 2664 2.575279 TCCTCCGTCTAGGTGAGTAAGT 59.425 50.000 0.00 0.00 41.99 2.24
2608 2665 2.944349 CCTCCGTCTAGGTGAGTAAGTC 59.056 54.545 0.00 0.00 41.99 3.01
2609 2666 3.607741 CTCCGTCTAGGTGAGTAAGTCA 58.392 50.000 0.00 0.00 41.99 3.41
2610 2667 4.200874 CTCCGTCTAGGTGAGTAAGTCAT 58.799 47.826 0.00 0.00 41.99 3.06
2611 2668 4.197750 TCCGTCTAGGTGAGTAAGTCATC 58.802 47.826 0.00 0.00 41.99 2.92
2613 2670 4.641094 CCGTCTAGGTGAGTAAGTCATCTT 59.359 45.833 0.00 0.00 45.09 2.40
2614 2671 5.821470 CCGTCTAGGTGAGTAAGTCATCTTA 59.179 44.000 0.00 0.00 45.09 2.10
2615 2672 6.318144 CCGTCTAGGTGAGTAAGTCATCTTAA 59.682 42.308 0.00 0.00 45.09 1.85
2616 2673 7.411274 CGTCTAGGTGAGTAAGTCATCTTAAG 58.589 42.308 0.00 0.00 45.09 1.85
2617 2674 7.197703 GTCTAGGTGAGTAAGTCATCTTAAGC 58.802 42.308 0.00 0.00 45.09 3.09
2618 2675 7.067737 GTCTAGGTGAGTAAGTCATCTTAAGCT 59.932 40.741 0.00 0.00 45.09 3.74
2619 2676 5.971763 AGGTGAGTAAGTCATCTTAAGCTG 58.028 41.667 0.00 0.00 45.09 4.24
2620 2677 5.482175 AGGTGAGTAAGTCATCTTAAGCTGT 59.518 40.000 6.23 0.00 45.09 4.40
2621 2678 5.578727 GGTGAGTAAGTCATCTTAAGCTGTG 59.421 44.000 6.23 1.85 37.56 3.66
2622 2679 5.062809 GTGAGTAAGTCATCTTAAGCTGTGC 59.937 44.000 6.23 1.87 37.56 4.57
2623 2680 5.152623 AGTAAGTCATCTTAAGCTGTGCA 57.847 39.130 6.23 0.00 37.81 4.57
2624 2681 4.932200 AGTAAGTCATCTTAAGCTGTGCAC 59.068 41.667 10.75 10.75 37.81 4.57
2625 2682 2.704572 AGTCATCTTAAGCTGTGCACC 58.295 47.619 15.69 0.00 0.00 5.01
2626 2683 1.394917 GTCATCTTAAGCTGTGCACCG 59.605 52.381 15.69 9.51 0.00 4.94
2627 2684 1.001974 TCATCTTAAGCTGTGCACCGT 59.998 47.619 15.69 0.15 0.00 4.83
2628 2685 1.129251 CATCTTAAGCTGTGCACCGTG 59.871 52.381 15.69 5.80 0.00 4.94
2629 2686 0.391228 TCTTAAGCTGTGCACCGTGA 59.609 50.000 15.69 0.00 0.00 4.35
2630 2687 0.512952 CTTAAGCTGTGCACCGTGAC 59.487 55.000 15.69 0.00 0.00 3.67
2631 2688 0.882927 TTAAGCTGTGCACCGTGACC 60.883 55.000 15.69 0.00 0.00 4.02
2632 2689 2.034048 TAAGCTGTGCACCGTGACCA 62.034 55.000 15.69 0.00 0.00 4.02
2633 2690 2.884997 AAGCTGTGCACCGTGACCAA 62.885 55.000 15.69 0.00 0.00 3.67
2634 2691 2.896801 GCTGTGCACCGTGACCAAG 61.897 63.158 15.69 3.09 0.00 3.61
2635 2692 2.203139 TGTGCACCGTGACCAAGG 60.203 61.111 15.69 0.44 35.99 3.61
2636 2693 2.110213 GTGCACCGTGACCAAGGA 59.890 61.111 5.22 0.00 33.97 3.36
2637 2694 1.961277 GTGCACCGTGACCAAGGAG 60.961 63.158 5.22 2.30 33.97 3.69
2638 2695 2.358737 GCACCGTGACCAAGGAGG 60.359 66.667 8.91 2.33 45.67 4.30
2639 2696 2.879233 GCACCGTGACCAAGGAGGA 61.879 63.158 8.91 0.00 41.22 3.71
2640 2697 1.983224 CACCGTGACCAAGGAGGAT 59.017 57.895 8.91 0.00 41.22 3.24
2641 2698 1.191535 CACCGTGACCAAGGAGGATA 58.808 55.000 8.91 0.00 41.22 2.59
2642 2699 1.553248 CACCGTGACCAAGGAGGATAA 59.447 52.381 8.91 0.00 41.22 1.75
2643 2700 1.831736 ACCGTGACCAAGGAGGATAAG 59.168 52.381 8.91 0.00 41.22 1.73
2644 2701 2.108168 CCGTGACCAAGGAGGATAAGA 58.892 52.381 0.00 0.00 41.22 2.10
2645 2702 2.500098 CCGTGACCAAGGAGGATAAGAA 59.500 50.000 0.00 0.00 41.22 2.52
2646 2703 3.055385 CCGTGACCAAGGAGGATAAGAAA 60.055 47.826 0.00 0.00 41.22 2.52
2647 2704 4.564821 CCGTGACCAAGGAGGATAAGAAAA 60.565 45.833 0.00 0.00 41.22 2.29
2648 2705 4.392138 CGTGACCAAGGAGGATAAGAAAAC 59.608 45.833 0.00 0.00 41.22 2.43
2649 2706 4.392138 GTGACCAAGGAGGATAAGAAAACG 59.608 45.833 0.00 0.00 41.22 3.60
2650 2707 4.285003 TGACCAAGGAGGATAAGAAAACGA 59.715 41.667 0.00 0.00 41.22 3.85
2651 2708 4.833390 ACCAAGGAGGATAAGAAAACGAG 58.167 43.478 0.00 0.00 41.22 4.18
2652 2709 4.530946 ACCAAGGAGGATAAGAAAACGAGA 59.469 41.667 0.00 0.00 41.22 4.04
2653 2710 5.112686 CCAAGGAGGATAAGAAAACGAGAG 58.887 45.833 0.00 0.00 41.22 3.20
2654 2711 5.105310 CCAAGGAGGATAAGAAAACGAGAGA 60.105 44.000 0.00 0.00 41.22 3.10
2655 2712 5.585820 AGGAGGATAAGAAAACGAGAGAC 57.414 43.478 0.00 0.00 0.00 3.36
2656 2713 4.403113 AGGAGGATAAGAAAACGAGAGACC 59.597 45.833 0.00 0.00 0.00 3.85
2657 2714 4.403113 GGAGGATAAGAAAACGAGAGACCT 59.597 45.833 0.00 0.00 0.00 3.85
2658 2715 5.105269 GGAGGATAAGAAAACGAGAGACCTT 60.105 44.000 0.00 0.00 0.00 3.50
2659 2716 6.096564 GGAGGATAAGAAAACGAGAGACCTTA 59.903 42.308 0.00 0.00 0.00 2.69
2660 2717 7.363617 GGAGGATAAGAAAACGAGAGACCTTAA 60.364 40.741 0.00 0.00 0.00 1.85
2661 2718 8.080363 AGGATAAGAAAACGAGAGACCTTAAT 57.920 34.615 0.00 0.00 0.00 1.40
2662 2719 7.982354 AGGATAAGAAAACGAGAGACCTTAATG 59.018 37.037 0.00 0.00 0.00 1.90
2663 2720 7.764901 GGATAAGAAAACGAGAGACCTTAATGT 59.235 37.037 0.00 0.00 0.00 2.71
2664 2721 9.152595 GATAAGAAAACGAGAGACCTTAATGTT 57.847 33.333 0.00 0.00 0.00 2.71
2665 2722 7.803279 AAGAAAACGAGAGACCTTAATGTTT 57.197 32.000 0.00 0.00 0.00 2.83
2666 2723 8.897872 AAGAAAACGAGAGACCTTAATGTTTA 57.102 30.769 0.00 0.00 0.00 2.01
2667 2724 9.503399 AAGAAAACGAGAGACCTTAATGTTTAT 57.497 29.630 0.00 0.00 0.00 1.40
2668 2725 9.503399 AGAAAACGAGAGACCTTAATGTTTATT 57.497 29.630 0.00 0.00 0.00 1.40
2670 2727 9.893305 AAAACGAGAGACCTTAATGTTTATTTG 57.107 29.630 0.00 0.00 0.00 2.32
2671 2728 7.073342 ACGAGAGACCTTAATGTTTATTTGC 57.927 36.000 0.00 0.00 0.00 3.68
2672 2729 6.879458 ACGAGAGACCTTAATGTTTATTTGCT 59.121 34.615 0.00 0.00 0.00 3.91
2673 2730 8.038944 ACGAGAGACCTTAATGTTTATTTGCTA 58.961 33.333 0.00 0.00 0.00 3.49
2674 2731 8.879759 CGAGAGACCTTAATGTTTATTTGCTAA 58.120 33.333 0.00 0.00 0.00 3.09
2714 2771 4.621068 ATGAACTAACCATTGCATGTCG 57.379 40.909 0.00 0.00 0.00 4.35
2715 2772 3.407698 TGAACTAACCATTGCATGTCGT 58.592 40.909 0.00 0.00 0.00 4.34
2716 2773 3.188254 TGAACTAACCATTGCATGTCGTG 59.812 43.478 0.00 0.00 0.00 4.35
2717 2774 2.778299 ACTAACCATTGCATGTCGTGT 58.222 42.857 0.00 0.00 0.00 4.49
2718 2775 3.146066 ACTAACCATTGCATGTCGTGTT 58.854 40.909 0.00 0.00 0.00 3.32
2719 2776 3.568007 ACTAACCATTGCATGTCGTGTTT 59.432 39.130 0.00 0.00 0.00 2.83
2720 2777 4.757657 ACTAACCATTGCATGTCGTGTTTA 59.242 37.500 0.00 0.00 0.00 2.01
2721 2778 3.829886 ACCATTGCATGTCGTGTTTAG 57.170 42.857 0.00 0.00 0.00 1.85
2722 2779 3.146066 ACCATTGCATGTCGTGTTTAGT 58.854 40.909 0.00 0.00 0.00 2.24
2723 2780 4.320023 ACCATTGCATGTCGTGTTTAGTA 58.680 39.130 0.00 0.00 0.00 1.82
2724 2781 4.391830 ACCATTGCATGTCGTGTTTAGTAG 59.608 41.667 0.00 0.00 0.00 2.57
2725 2782 4.391830 CCATTGCATGTCGTGTTTAGTAGT 59.608 41.667 0.00 0.00 0.00 2.73
2726 2783 5.445939 CCATTGCATGTCGTGTTTAGTAGTC 60.446 44.000 0.00 0.00 0.00 2.59
2727 2784 4.514781 TGCATGTCGTGTTTAGTAGTCT 57.485 40.909 0.00 0.00 0.00 3.24
2728 2785 4.482386 TGCATGTCGTGTTTAGTAGTCTC 58.518 43.478 0.00 0.00 0.00 3.36
2729 2786 4.022676 TGCATGTCGTGTTTAGTAGTCTCA 60.023 41.667 0.00 0.00 0.00 3.27
2730 2787 4.921515 GCATGTCGTGTTTAGTAGTCTCAA 59.078 41.667 0.00 0.00 0.00 3.02
2731 2788 5.061064 GCATGTCGTGTTTAGTAGTCTCAAG 59.939 44.000 0.00 0.00 0.00 3.02
2732 2789 5.762825 TGTCGTGTTTAGTAGTCTCAAGT 57.237 39.130 0.00 0.00 0.00 3.16
2733 2790 5.755813 TGTCGTGTTTAGTAGTCTCAAGTC 58.244 41.667 0.00 0.00 0.00 3.01
2734 2791 5.297527 TGTCGTGTTTAGTAGTCTCAAGTCA 59.702 40.000 0.00 0.00 0.00 3.41
2735 2792 6.016527 TGTCGTGTTTAGTAGTCTCAAGTCAT 60.017 38.462 0.00 0.00 0.00 3.06
2736 2793 6.862090 GTCGTGTTTAGTAGTCTCAAGTCATT 59.138 38.462 0.00 0.00 0.00 2.57
2737 2794 8.019669 GTCGTGTTTAGTAGTCTCAAGTCATTA 58.980 37.037 0.00 0.00 0.00 1.90
2738 2795 8.570488 TCGTGTTTAGTAGTCTCAAGTCATTAA 58.430 33.333 0.00 0.00 0.00 1.40
2739 2796 9.188588 CGTGTTTAGTAGTCTCAAGTCATTAAA 57.811 33.333 0.00 0.00 0.00 1.52
2743 2800 9.772973 TTTAGTAGTCTCAAGTCATTAAAAGCA 57.227 29.630 0.00 0.00 0.00 3.91
2744 2801 9.944376 TTAGTAGTCTCAAGTCATTAAAAGCAT 57.056 29.630 0.00 0.00 0.00 3.79
2745 2802 8.261492 AGTAGTCTCAAGTCATTAAAAGCATG 57.739 34.615 0.00 0.00 0.00 4.06
2746 2803 5.947443 AGTCTCAAGTCATTAAAAGCATGC 58.053 37.500 10.51 10.51 0.00 4.06
2747 2804 5.474532 AGTCTCAAGTCATTAAAAGCATGCA 59.525 36.000 21.98 0.00 0.00 3.96
2748 2805 5.570589 GTCTCAAGTCATTAAAAGCATGCAC 59.429 40.000 21.98 6.43 0.00 4.57
2749 2806 5.241285 TCTCAAGTCATTAAAAGCATGCACA 59.759 36.000 21.98 0.00 0.00 4.57
2750 2807 5.221880 TCAAGTCATTAAAAGCATGCACAC 58.778 37.500 21.98 4.04 0.00 3.82
2751 2808 4.178545 AGTCATTAAAAGCATGCACACC 57.821 40.909 21.98 0.00 0.00 4.16
2752 2809 3.056607 AGTCATTAAAAGCATGCACACCC 60.057 43.478 21.98 0.00 0.00 4.61
2753 2810 2.896044 TCATTAAAAGCATGCACACCCA 59.104 40.909 21.98 0.00 0.00 4.51
2754 2811 3.514706 TCATTAAAAGCATGCACACCCAT 59.485 39.130 21.98 1.34 0.00 4.00
2755 2812 3.591196 TTAAAAGCATGCACACCCATC 57.409 42.857 21.98 0.00 0.00 3.51
2756 2813 1.340088 AAAAGCATGCACACCCATCA 58.660 45.000 21.98 0.00 0.00 3.07
2757 2814 1.563924 AAAGCATGCACACCCATCAT 58.436 45.000 21.98 0.00 0.00 2.45
2758 2815 1.108776 AAGCATGCACACCCATCATC 58.891 50.000 21.98 0.00 0.00 2.92
2759 2816 0.257905 AGCATGCACACCCATCATCT 59.742 50.000 21.98 0.00 0.00 2.90
2760 2817 0.666913 GCATGCACACCCATCATCTC 59.333 55.000 14.21 0.00 0.00 2.75
2761 2818 1.749635 GCATGCACACCCATCATCTCT 60.750 52.381 14.21 0.00 0.00 3.10
2762 2819 2.651455 CATGCACACCCATCATCTCTT 58.349 47.619 0.00 0.00 0.00 2.85
2763 2820 3.812262 CATGCACACCCATCATCTCTTA 58.188 45.455 0.00 0.00 0.00 2.10
2764 2821 4.395625 CATGCACACCCATCATCTCTTAT 58.604 43.478 0.00 0.00 0.00 1.73
2765 2822 4.508551 TGCACACCCATCATCTCTTATT 57.491 40.909 0.00 0.00 0.00 1.40
2766 2823 4.201657 TGCACACCCATCATCTCTTATTG 58.798 43.478 0.00 0.00 0.00 1.90
2767 2824 3.567164 GCACACCCATCATCTCTTATTGG 59.433 47.826 0.00 0.00 0.00 3.16
2768 2825 4.785301 CACACCCATCATCTCTTATTGGT 58.215 43.478 0.00 0.00 0.00 3.67
2769 2826 5.195940 CACACCCATCATCTCTTATTGGTT 58.804 41.667 0.00 0.00 0.00 3.67
2770 2827 5.066893 CACACCCATCATCTCTTATTGGTTG 59.933 44.000 0.00 0.00 0.00 3.77
2771 2828 5.044919 ACACCCATCATCTCTTATTGGTTGA 60.045 40.000 0.00 0.00 0.00 3.18
2772 2829 6.066690 CACCCATCATCTCTTATTGGTTGAT 58.933 40.000 0.00 0.00 0.00 2.57
2773 2830 7.147320 ACACCCATCATCTCTTATTGGTTGATA 60.147 37.037 0.00 0.00 0.00 2.15
2774 2831 7.886970 CACCCATCATCTCTTATTGGTTGATAT 59.113 37.037 0.00 0.00 0.00 1.63
2775 2832 7.886970 ACCCATCATCTCTTATTGGTTGATATG 59.113 37.037 0.00 0.00 0.00 1.78
2776 2833 7.886970 CCCATCATCTCTTATTGGTTGATATGT 59.113 37.037 0.00 0.00 0.00 2.29
2777 2834 8.944029 CCATCATCTCTTATTGGTTGATATGTC 58.056 37.037 0.00 0.00 0.00 3.06
2778 2835 9.498176 CATCATCTCTTATTGGTTGATATGTCA 57.502 33.333 0.00 0.00 0.00 3.58
2791 2848 9.906660 TGGTTGATATGTCAATAAACAAGAAAC 57.093 29.630 8.23 0.00 45.46 2.78
2792 2849 9.061610 GGTTGATATGTCAATAAACAAGAAACG 57.938 33.333 8.23 0.00 45.46 3.60
2793 2850 9.820229 GTTGATATGTCAATAAACAAGAAACGA 57.180 29.630 8.23 0.00 45.46 3.85
2799 2856 8.199176 TGTCAATAAACAAGAAACGAAGTACA 57.801 30.769 0.00 0.00 45.00 2.90
2800 2857 8.666573 TGTCAATAAACAAGAAACGAAGTACAA 58.333 29.630 0.00 0.00 45.00 2.41
2801 2858 9.493206 GTCAATAAACAAGAAACGAAGTACAAA 57.507 29.630 0.00 0.00 45.00 2.83
2808 2865 8.502161 ACAAGAAACGAAGTACAAATTAATGC 57.498 30.769 0.00 0.00 45.00 3.56
2809 2866 8.132362 ACAAGAAACGAAGTACAAATTAATGCA 58.868 29.630 0.00 0.00 45.00 3.96
2810 2867 8.417176 CAAGAAACGAAGTACAAATTAATGCAC 58.583 33.333 0.00 0.00 45.00 4.57
2811 2868 7.081976 AGAAACGAAGTACAAATTAATGCACC 58.918 34.615 0.00 0.00 45.00 5.01
2812 2869 4.965062 ACGAAGTACAAATTAATGCACCG 58.035 39.130 0.00 0.00 41.94 4.94
2813 2870 4.453136 ACGAAGTACAAATTAATGCACCGT 59.547 37.500 0.00 0.00 41.94 4.83
2814 2871 4.786068 CGAAGTACAAATTAATGCACCGTG 59.214 41.667 0.00 0.00 0.00 4.94
2815 2872 4.091453 AGTACAAATTAATGCACCGTGC 57.909 40.909 16.93 16.93 45.29 5.34
2816 2873 2.362169 ACAAATTAATGCACCGTGCC 57.638 45.000 20.67 3.67 44.23 5.01
2817 2874 1.892474 ACAAATTAATGCACCGTGCCT 59.108 42.857 20.67 8.34 44.23 4.75
2818 2875 3.085533 ACAAATTAATGCACCGTGCCTA 58.914 40.909 20.67 9.40 44.23 3.93
2819 2876 3.508012 ACAAATTAATGCACCGTGCCTAA 59.492 39.130 20.67 16.94 44.23 2.69
2820 2877 4.104776 CAAATTAATGCACCGTGCCTAAG 58.895 43.478 20.67 4.05 44.23 2.18
2821 2878 2.483014 TTAATGCACCGTGCCTAAGT 57.517 45.000 20.67 4.35 44.23 2.24
2822 2879 1.732941 TAATGCACCGTGCCTAAGTG 58.267 50.000 20.67 0.00 44.23 3.16
2823 2880 0.250727 AATGCACCGTGCCTAAGTGT 60.251 50.000 20.67 0.00 44.23 3.55
2824 2881 0.250727 ATGCACCGTGCCTAAGTGTT 60.251 50.000 20.67 0.00 44.23 3.32
2825 2882 0.464735 TGCACCGTGCCTAAGTGTTT 60.465 50.000 20.67 0.00 44.23 2.83
2826 2883 0.666374 GCACCGTGCCTAAGTGTTTT 59.334 50.000 12.80 0.00 37.42 2.43
2827 2884 1.599419 GCACCGTGCCTAAGTGTTTTG 60.599 52.381 12.80 0.00 37.42 2.44
2828 2885 1.001815 CACCGTGCCTAAGTGTTTTGG 60.002 52.381 0.00 0.00 33.04 3.28
2829 2886 0.596082 CCGTGCCTAAGTGTTTTGGG 59.404 55.000 0.00 0.00 30.91 4.12
2830 2887 1.600023 CGTGCCTAAGTGTTTTGGGA 58.400 50.000 0.00 0.00 30.91 4.37
2831 2888 2.159382 CGTGCCTAAGTGTTTTGGGAT 58.841 47.619 0.00 0.00 32.82 3.85
2832 2889 2.556622 CGTGCCTAAGTGTTTTGGGATT 59.443 45.455 0.00 0.00 32.82 3.01
2833 2890 3.754323 CGTGCCTAAGTGTTTTGGGATTA 59.246 43.478 0.00 0.00 32.82 1.75
2834 2891 4.398044 CGTGCCTAAGTGTTTTGGGATTAT 59.602 41.667 0.00 0.00 32.82 1.28
2835 2892 5.105917 CGTGCCTAAGTGTTTTGGGATTATT 60.106 40.000 0.00 0.00 32.82 1.40
2836 2893 6.571537 CGTGCCTAAGTGTTTTGGGATTATTT 60.572 38.462 0.00 0.00 32.82 1.40
2837 2894 6.589907 GTGCCTAAGTGTTTTGGGATTATTTG 59.410 38.462 0.00 0.00 32.82 2.32
2838 2895 6.106003 GCCTAAGTGTTTTGGGATTATTTGG 58.894 40.000 0.00 0.00 30.91 3.28
2839 2896 6.295632 GCCTAAGTGTTTTGGGATTATTTGGT 60.296 38.462 0.00 0.00 30.91 3.67
2840 2897 7.676004 CCTAAGTGTTTTGGGATTATTTGGTT 58.324 34.615 0.00 0.00 0.00 3.67
2841 2898 8.154203 CCTAAGTGTTTTGGGATTATTTGGTTT 58.846 33.333 0.00 0.00 0.00 3.27
2842 2899 9.554395 CTAAGTGTTTTGGGATTATTTGGTTTT 57.446 29.630 0.00 0.00 0.00 2.43
2843 2900 8.445275 AAGTGTTTTGGGATTATTTGGTTTTC 57.555 30.769 0.00 0.00 0.00 2.29
2844 2901 6.704050 AGTGTTTTGGGATTATTTGGTTTTCG 59.296 34.615 0.00 0.00 0.00 3.46
2845 2902 6.480651 GTGTTTTGGGATTATTTGGTTTTCGT 59.519 34.615 0.00 0.00 0.00 3.85
2846 2903 7.652507 GTGTTTTGGGATTATTTGGTTTTCGTA 59.347 33.333 0.00 0.00 0.00 3.43
2847 2904 8.202137 TGTTTTGGGATTATTTGGTTTTCGTAA 58.798 29.630 0.00 0.00 0.00 3.18
2848 2905 8.705134 GTTTTGGGATTATTTGGTTTTCGTAAG 58.295 33.333 0.00 0.00 0.00 2.34
2868 2925 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
2869 2926 4.586884 AGATGACTTACACACCTAGACGA 58.413 43.478 0.00 0.00 0.00 4.20
2870 2927 5.008331 AGATGACTTACACACCTAGACGAA 58.992 41.667 0.00 0.00 0.00 3.85
2871 2928 4.761235 TGACTTACACACCTAGACGAAG 57.239 45.455 0.00 0.00 0.00 3.79
2872 2929 3.504906 TGACTTACACACCTAGACGAAGG 59.495 47.826 0.00 0.00 42.82 3.46
2873 2930 3.755378 GACTTACACACCTAGACGAAGGA 59.245 47.826 9.64 0.00 39.15 3.36
2874 2931 4.147321 ACTTACACACCTAGACGAAGGAA 58.853 43.478 9.64 0.00 39.15 3.36
2875 2932 4.217983 ACTTACACACCTAGACGAAGGAAG 59.782 45.833 9.64 5.55 39.15 3.46
2876 2933 2.595238 ACACACCTAGACGAAGGAAGT 58.405 47.619 9.64 5.61 39.15 3.01
2877 2934 3.759581 ACACACCTAGACGAAGGAAGTA 58.240 45.455 9.64 0.00 39.15 2.24
2878 2935 3.757493 ACACACCTAGACGAAGGAAGTAG 59.243 47.826 9.64 6.14 39.15 2.57
2879 2936 3.757493 CACACCTAGACGAAGGAAGTAGT 59.243 47.826 9.64 0.00 39.15 2.73
2880 2937 4.217983 CACACCTAGACGAAGGAAGTAGTT 59.782 45.833 9.64 0.00 39.15 2.24
2890 2947 3.618690 AGGAAGTAGTTGCTAGGCTTG 57.381 47.619 1.94 0.00 31.44 4.01
3018 3079 3.899734 TGTTAAGCAGTACGCGAGTTTA 58.100 40.909 15.93 5.50 46.40 2.01
3146 3207 6.426980 TTTCAGCATGTTCATGAGTCATAC 57.573 37.500 15.74 2.04 37.40 2.39
3148 3209 4.162888 TCAGCATGTTCATGAGTCATACCT 59.837 41.667 15.74 10.25 37.40 3.08
3176 3237 5.821516 ACAGTACTACAGCACTACAGATC 57.178 43.478 0.00 0.00 0.00 2.75
3181 3242 6.831353 AGTACTACAGCACTACAGATCTTCAT 59.169 38.462 0.00 0.00 0.00 2.57
3184 3245 5.611128 ACAGCACTACAGATCTTCATCAT 57.389 39.130 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.676736 GTCTATTCAGGGCTCCGGAG 59.323 60.000 27.83 27.83 0.00 4.63
5 6 0.261991 AGTCTATTCAGGGCTCCGGA 59.738 55.000 2.93 2.93 0.00 5.14
6 7 0.676736 GAGTCTATTCAGGGCTCCGG 59.323 60.000 0.00 0.00 0.00 5.14
7 8 0.676736 GGAGTCTATTCAGGGCTCCG 59.323 60.000 0.00 0.00 35.87 4.63
8 9 1.691434 CTGGAGTCTATTCAGGGCTCC 59.309 57.143 7.34 7.34 41.10 4.70
9 10 2.672098 TCTGGAGTCTATTCAGGGCTC 58.328 52.381 0.00 0.00 0.00 4.70
10 11 2.856760 TCTGGAGTCTATTCAGGGCT 57.143 50.000 0.00 0.00 0.00 5.19
11 12 3.006752 CAGATCTGGAGTCTATTCAGGGC 59.993 52.174 15.38 0.00 0.00 5.19
12 13 4.870123 CAGATCTGGAGTCTATTCAGGG 57.130 50.000 15.38 0.00 0.00 4.45
26 27 1.117749 TCATCGGGAGGCCAGATCTG 61.118 60.000 16.24 16.24 36.36 2.90
27 28 0.399091 TTCATCGGGAGGCCAGATCT 60.399 55.000 5.01 0.00 36.36 2.75
28 29 0.034616 CTTCATCGGGAGGCCAGATC 59.965 60.000 5.01 0.00 36.36 2.75
29 30 0.399091 TCTTCATCGGGAGGCCAGAT 60.399 55.000 5.01 0.83 38.90 2.90
30 31 0.617535 TTCTTCATCGGGAGGCCAGA 60.618 55.000 5.01 0.00 31.46 3.86
31 32 0.462759 GTTCTTCATCGGGAGGCCAG 60.463 60.000 5.01 0.00 0.00 4.85
32 33 1.198094 TGTTCTTCATCGGGAGGCCA 61.198 55.000 5.01 0.00 0.00 5.36
33 34 0.462759 CTGTTCTTCATCGGGAGGCC 60.463 60.000 0.00 0.00 0.00 5.19
34 35 0.537188 TCTGTTCTTCATCGGGAGGC 59.463 55.000 0.00 0.00 0.00 4.70
35 36 2.419297 CCTTCTGTTCTTCATCGGGAGG 60.419 54.545 0.00 0.00 30.45 4.30
36 37 2.234908 ACCTTCTGTTCTTCATCGGGAG 59.765 50.000 0.00 0.00 0.00 4.30
37 38 2.028112 CACCTTCTGTTCTTCATCGGGA 60.028 50.000 0.00 0.00 0.00 5.14
38 39 2.350522 CACCTTCTGTTCTTCATCGGG 58.649 52.381 0.00 0.00 0.00 5.14
39 40 2.350522 CCACCTTCTGTTCTTCATCGG 58.649 52.381 0.00 0.00 0.00 4.18
40 41 1.734465 GCCACCTTCTGTTCTTCATCG 59.266 52.381 0.00 0.00 0.00 3.84
41 42 1.734465 CGCCACCTTCTGTTCTTCATC 59.266 52.381 0.00 0.00 0.00 2.92
42 43 1.611673 CCGCCACCTTCTGTTCTTCAT 60.612 52.381 0.00 0.00 0.00 2.57
43 44 0.250295 CCGCCACCTTCTGTTCTTCA 60.250 55.000 0.00 0.00 0.00 3.02
44 45 1.578206 GCCGCCACCTTCTGTTCTTC 61.578 60.000 0.00 0.00 0.00 2.87
45 46 1.600916 GCCGCCACCTTCTGTTCTT 60.601 57.895 0.00 0.00 0.00 2.52
46 47 2.032681 GCCGCCACCTTCTGTTCT 59.967 61.111 0.00 0.00 0.00 3.01
47 48 3.423154 CGCCGCCACCTTCTGTTC 61.423 66.667 0.00 0.00 0.00 3.18
57 58 4.884257 GATACGAAGCCGCCGCCA 62.884 66.667 0.00 0.00 39.95 5.69
60 61 3.320078 CACGATACGAAGCCGCCG 61.320 66.667 0.00 0.00 39.95 6.46
61 62 1.079875 TTTCACGATACGAAGCCGCC 61.080 55.000 0.00 0.00 39.95 6.13
62 63 0.024619 GTTTCACGATACGAAGCCGC 59.975 55.000 0.00 0.00 39.95 6.53
63 64 0.293723 CGTTTCACGATACGAAGCCG 59.706 55.000 4.30 0.00 46.05 5.52
64 65 1.058695 CACGTTTCACGATACGAAGCC 59.941 52.381 15.35 0.00 46.05 4.35
68 69 1.266446 TCACCACGTTTCACGATACGA 59.734 47.619 15.35 0.00 46.05 3.43
72 73 2.557317 AGTTTCACCACGTTTCACGAT 58.443 42.857 2.75 0.00 46.05 3.73
83 84 4.597507 ACAATAGGAGAGGAAGTTTCACCA 59.402 41.667 0.00 0.00 0.00 4.17
109 110 8.379457 ACGTTATAAGATCCTATTTTTGGAGC 57.621 34.615 0.00 0.00 40.03 4.70
119 120 8.591072 CCCTAATTCCAACGTTATAAGATCCTA 58.409 37.037 0.00 0.00 0.00 2.94
122 123 7.929785 TGACCCTAATTCCAACGTTATAAGATC 59.070 37.037 0.00 0.00 0.00 2.75
125 126 7.691158 GTTGACCCTAATTCCAACGTTATAAG 58.309 38.462 0.00 0.00 31.16 1.73
284 285 9.717942 TTCTCAAAATTGGAGAAACTTTTTGAA 57.282 25.926 10.21 0.00 45.62 2.69
304 305 8.994429 TTTTGTGCAGAAATAAAAGTTCTCAA 57.006 26.923 10.13 0.00 32.96 3.02
305 306 8.868916 GTTTTTGTGCAGAAATAAAAGTTCTCA 58.131 29.630 10.13 0.00 32.96 3.27
333 334 2.691409 TAGCAGAACTACCATGGTGC 57.309 50.000 28.17 20.12 0.00 5.01
347 348 4.143179 CCGAACTAACGAGGTTTTTAGCAG 60.143 45.833 0.00 0.00 35.09 4.24
358 359 7.274904 TGAATGAAACTAATCCGAACTAACGAG 59.725 37.037 0.00 0.00 35.09 4.18
403 404 7.932335 TCCTAACGTTTTTGCTCTTATTTTGA 58.068 30.769 5.91 0.00 0.00 2.69
409 410 7.324354 ACTTTTCCTAACGTTTTTGCTCTTA 57.676 32.000 5.91 0.00 0.00 2.10
415 416 7.953710 CCGTATCTACTTTTCCTAACGTTTTTG 59.046 37.037 5.91 0.00 0.00 2.44
420 421 5.415701 TCACCGTATCTACTTTTCCTAACGT 59.584 40.000 0.00 0.00 0.00 3.99
427 428 5.397326 ACGTCTTCACCGTATCTACTTTTC 58.603 41.667 0.00 0.00 36.65 2.29
437 438 3.016031 TGCCTAATACGTCTTCACCGTA 58.984 45.455 0.00 0.00 44.02 4.02
441 442 2.850647 GTCGTGCCTAATACGTCTTCAC 59.149 50.000 0.00 0.00 41.91 3.18
479 480 3.591254 GAGGAGCTTGCGGGTTCGT 62.591 63.158 0.00 0.00 38.89 3.85
491 492 1.791103 CGAGTCGGAGGATGAGGAGC 61.791 65.000 4.10 0.00 0.00 4.70
514 515 1.595382 GTGCCCTCGATTCGGATGG 60.595 63.158 6.18 5.74 0.00 3.51
531 532 0.468226 TTCCTGTCAACCGCTTCTGT 59.532 50.000 0.00 0.00 0.00 3.41
572 573 1.614824 CCCTCCCTCTCTGCCTTGT 60.615 63.158 0.00 0.00 0.00 3.16
617 619 2.683933 TCTTCTCCCTCCCCGTGC 60.684 66.667 0.00 0.00 0.00 5.34
619 621 2.231540 CTCCTCTTCTCCCTCCCCGT 62.232 65.000 0.00 0.00 0.00 5.28
677 679 1.232792 CCTCTCTCCCTCCCCTCTG 59.767 68.421 0.00 0.00 0.00 3.35
710 712 9.582431 GAGTAAATAAACAAAAATAAGGGGAGC 57.418 33.333 0.00 0.00 0.00 4.70
761 763 8.342634 CCATTTTACCTCCGTTACAATTCATAG 58.657 37.037 0.00 0.00 0.00 2.23
764 766 6.005198 ACCATTTTACCTCCGTTACAATTCA 58.995 36.000 0.00 0.00 0.00 2.57
775 777 4.010349 CTCCACTTGACCATTTTACCTCC 58.990 47.826 0.00 0.00 0.00 4.30
823 832 3.129988 GCTCATGTCAAGGGAATGAAAGG 59.870 47.826 0.00 0.00 30.28 3.11
1077 1107 1.080705 GACGGAGGACACAGGAACG 60.081 63.158 0.00 0.00 0.00 3.95
1109 1142 2.420890 CATGCTCTCCTCCTCGCC 59.579 66.667 0.00 0.00 0.00 5.54
1112 1145 1.747774 GAGGCATGCTCTCCTCCTC 59.252 63.158 18.92 9.79 42.30 3.71
1113 1146 3.968773 GAGGCATGCTCTCCTCCT 58.031 61.111 18.92 3.59 42.30 3.69
1150 1183 2.123589 TGGTTCTTGAGGGTCACTTCA 58.876 47.619 0.00 0.00 0.00 3.02
1151 1184 2.930826 TGGTTCTTGAGGGTCACTTC 57.069 50.000 0.00 0.00 0.00 3.01
1152 1185 2.815589 GCATGGTTCTTGAGGGTCACTT 60.816 50.000 0.00 0.00 0.00 3.16
1153 1186 1.271597 GCATGGTTCTTGAGGGTCACT 60.272 52.381 0.00 0.00 0.00 3.41
1154 1187 1.168714 GCATGGTTCTTGAGGGTCAC 58.831 55.000 0.00 0.00 0.00 3.67
1155 1188 1.067295 AGCATGGTTCTTGAGGGTCA 58.933 50.000 0.00 0.00 0.00 4.02
1213 1248 8.028652 AGGATAATCAAAACAAACAAAGGGAA 57.971 30.769 0.00 0.00 0.00 3.97
1330 1370 1.604604 CCGCAAGAACAGGAAAAGGA 58.395 50.000 0.00 0.00 43.02 3.36
1360 1400 1.503542 CGATGCAGACCAAAGTGCC 59.496 57.895 0.00 0.00 39.04 5.01
1435 1475 0.545309 CTCTCCCTGGTGGAAGTCCA 60.545 60.000 0.00 0.00 44.57 4.02
1438 1478 0.489567 AGTCTCTCCCTGGTGGAAGT 59.510 55.000 0.00 0.00 44.57 3.01
1535 1581 3.681835 GGACGTGGTGCTCGGTCT 61.682 66.667 0.00 0.00 0.00 3.85
1799 1846 5.119434 GCCATTAATTAACACAAAACACGGG 59.881 40.000 0.00 0.00 0.00 5.28
2016 2063 0.676782 GCCGGTACCTGTGCTTGAAT 60.677 55.000 10.90 0.00 0.00 2.57
2059 2106 3.747976 AATGAGGTTTGCCGCGCC 61.748 61.111 0.00 0.00 40.50 6.53
2060 2107 2.504681 CAATGAGGTTTGCCGCGC 60.505 61.111 0.00 0.00 40.50 6.86
2061 2108 1.154225 GACAATGAGGTTTGCCGCG 60.154 57.895 0.00 0.00 40.50 6.46
2062 2109 1.154225 CGACAATGAGGTTTGCCGC 60.154 57.895 0.00 0.00 40.50 6.53
2238 2291 1.025113 TGTCGAGGGAGCTGTAGTCG 61.025 60.000 0.00 0.00 0.00 4.18
2303 2356 1.226974 ATCGATCACCAGAACCGCG 60.227 57.895 0.00 0.00 0.00 6.46
2418 2473 5.512942 TTTCTCACCCAAGATATCCACAA 57.487 39.130 0.00 0.00 0.00 3.33
2487 2544 1.733912 CACATTGGATGAGTGGACACG 59.266 52.381 0.00 0.00 36.20 4.49
2555 2612 6.645415 TGTCAGTTAAAGTGTTAGCTCTAAGC 59.355 38.462 0.00 0.00 42.84 3.09
2565 2622 6.885922 AGGAAGTAGTGTCAGTTAAAGTGTT 58.114 36.000 0.00 0.00 0.00 3.32
2584 2641 2.131776 ACTCACCTAGACGGAGGAAG 57.868 55.000 7.23 6.60 39.15 3.46
2587 2644 2.944349 GACTTACTCACCTAGACGGAGG 59.056 54.545 0.00 0.00 42.89 4.30
2588 2645 3.607741 TGACTTACTCACCTAGACGGAG 58.392 50.000 0.00 0.00 36.31 4.63
2589 2646 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
2590 2647 4.200874 AGATGACTTACTCACCTAGACGG 58.799 47.826 0.00 0.00 39.35 4.79
2591 2648 5.821516 AAGATGACTTACTCACCTAGACG 57.178 43.478 0.00 0.00 34.28 4.18
2592 2649 7.067737 AGCTTAAGATGACTTACTCACCTAGAC 59.932 40.741 6.67 0.00 38.18 2.59
2593 2650 7.067615 CAGCTTAAGATGACTTACTCACCTAGA 59.932 40.741 15.68 0.00 38.18 2.43
2594 2651 7.147983 ACAGCTTAAGATGACTTACTCACCTAG 60.148 40.741 26.59 0.00 38.18 3.02
2595 2652 6.663953 ACAGCTTAAGATGACTTACTCACCTA 59.336 38.462 26.59 0.00 38.18 3.08
2596 2653 5.482175 ACAGCTTAAGATGACTTACTCACCT 59.518 40.000 26.59 0.00 38.18 4.00
2597 2654 5.578727 CACAGCTTAAGATGACTTACTCACC 59.421 44.000 26.59 0.00 38.18 4.02
2598 2655 5.062809 GCACAGCTTAAGATGACTTACTCAC 59.937 44.000 26.59 2.17 38.18 3.51
2599 2656 5.171476 GCACAGCTTAAGATGACTTACTCA 58.829 41.667 26.59 0.00 38.18 3.41
2600 2657 5.062809 GTGCACAGCTTAAGATGACTTACTC 59.937 44.000 26.59 8.19 38.18 2.59
2601 2658 4.932200 GTGCACAGCTTAAGATGACTTACT 59.068 41.667 26.59 0.34 38.18 2.24
2602 2659 4.093556 GGTGCACAGCTTAAGATGACTTAC 59.906 45.833 26.59 17.25 38.18 2.34
2603 2660 4.253685 GGTGCACAGCTTAAGATGACTTA 58.746 43.478 26.59 7.54 37.53 2.24
2604 2661 3.077359 GGTGCACAGCTTAAGATGACTT 58.923 45.455 26.59 1.91 39.81 3.01
2605 2662 2.704572 GGTGCACAGCTTAAGATGACT 58.295 47.619 26.59 2.69 35.09 3.41
2606 2663 1.394917 CGGTGCACAGCTTAAGATGAC 59.605 52.381 26.59 17.45 35.09 3.06
2607 2664 1.001974 ACGGTGCACAGCTTAAGATGA 59.998 47.619 26.59 1.91 35.09 2.92
2608 2665 1.129251 CACGGTGCACAGCTTAAGATG 59.871 52.381 18.88 18.88 37.48 2.90
2609 2666 1.001974 TCACGGTGCACAGCTTAAGAT 59.998 47.619 20.43 0.00 0.00 2.40
2610 2667 0.391228 TCACGGTGCACAGCTTAAGA 59.609 50.000 20.43 5.93 0.00 2.10
2611 2668 0.512952 GTCACGGTGCACAGCTTAAG 59.487 55.000 20.43 0.00 0.00 1.85
2612 2669 0.882927 GGTCACGGTGCACAGCTTAA 60.883 55.000 20.43 0.00 0.00 1.85
2613 2670 1.301401 GGTCACGGTGCACAGCTTA 60.301 57.895 20.43 0.49 0.00 3.09
2614 2671 2.591715 GGTCACGGTGCACAGCTT 60.592 61.111 20.43 0.00 0.00 3.74
2615 2672 3.399105 TTGGTCACGGTGCACAGCT 62.399 57.895 20.43 2.65 0.00 4.24
2616 2673 2.896801 CTTGGTCACGGTGCACAGC 61.897 63.158 20.43 8.20 0.00 4.40
2617 2674 2.253758 CCTTGGTCACGGTGCACAG 61.254 63.158 20.43 18.06 0.00 3.66
2618 2675 2.203139 CCTTGGTCACGGTGCACA 60.203 61.111 20.43 1.81 0.00 4.57
2619 2676 1.961277 CTCCTTGGTCACGGTGCAC 60.961 63.158 8.80 8.80 0.00 4.57
2620 2677 2.425592 CTCCTTGGTCACGGTGCA 59.574 61.111 2.51 0.00 0.00 4.57
2621 2678 2.185310 ATCCTCCTTGGTCACGGTGC 62.185 60.000 2.51 0.00 37.07 5.01
2622 2679 1.191535 TATCCTCCTTGGTCACGGTG 58.808 55.000 0.56 0.56 37.07 4.94
2623 2680 1.831736 CTTATCCTCCTTGGTCACGGT 59.168 52.381 0.00 0.00 37.07 4.83
2624 2681 2.108168 TCTTATCCTCCTTGGTCACGG 58.892 52.381 0.00 0.00 37.07 4.94
2625 2682 3.887621 TTCTTATCCTCCTTGGTCACG 57.112 47.619 0.00 0.00 37.07 4.35
2626 2683 4.392138 CGTTTTCTTATCCTCCTTGGTCAC 59.608 45.833 0.00 0.00 37.07 3.67
2627 2684 4.285003 TCGTTTTCTTATCCTCCTTGGTCA 59.715 41.667 0.00 0.00 37.07 4.02
2628 2685 4.828829 TCGTTTTCTTATCCTCCTTGGTC 58.171 43.478 0.00 0.00 37.07 4.02
2629 2686 4.530946 TCTCGTTTTCTTATCCTCCTTGGT 59.469 41.667 0.00 0.00 37.07 3.67
2630 2687 5.086104 TCTCGTTTTCTTATCCTCCTTGG 57.914 43.478 0.00 0.00 37.10 3.61
2631 2688 5.808030 GTCTCTCGTTTTCTTATCCTCCTTG 59.192 44.000 0.00 0.00 0.00 3.61
2632 2689 5.105269 GGTCTCTCGTTTTCTTATCCTCCTT 60.105 44.000 0.00 0.00 0.00 3.36
2633 2690 4.403113 GGTCTCTCGTTTTCTTATCCTCCT 59.597 45.833 0.00 0.00 0.00 3.69
2634 2691 4.403113 AGGTCTCTCGTTTTCTTATCCTCC 59.597 45.833 0.00 0.00 0.00 4.30
2635 2692 5.585820 AGGTCTCTCGTTTTCTTATCCTC 57.414 43.478 0.00 0.00 0.00 3.71
2636 2693 7.477945 TTAAGGTCTCTCGTTTTCTTATCCT 57.522 36.000 0.00 0.00 0.00 3.24
2637 2694 7.764901 ACATTAAGGTCTCTCGTTTTCTTATCC 59.235 37.037 0.00 0.00 0.00 2.59
2638 2695 8.705048 ACATTAAGGTCTCTCGTTTTCTTATC 57.295 34.615 0.00 0.00 0.00 1.75
2639 2696 9.503399 AAACATTAAGGTCTCTCGTTTTCTTAT 57.497 29.630 0.00 0.00 0.00 1.73
2640 2697 8.897872 AAACATTAAGGTCTCTCGTTTTCTTA 57.102 30.769 0.00 0.00 0.00 2.10
2641 2698 7.803279 AAACATTAAGGTCTCTCGTTTTCTT 57.197 32.000 0.00 0.00 0.00 2.52
2642 2699 9.503399 AATAAACATTAAGGTCTCTCGTTTTCT 57.497 29.630 0.00 0.00 0.00 2.52
2644 2701 9.893305 CAAATAAACATTAAGGTCTCTCGTTTT 57.107 29.630 0.00 0.00 0.00 2.43
2645 2702 8.021396 GCAAATAAACATTAAGGTCTCTCGTTT 58.979 33.333 0.00 0.00 0.00 3.60
2646 2703 7.390718 AGCAAATAAACATTAAGGTCTCTCGTT 59.609 33.333 0.00 0.00 0.00 3.85
2647 2704 6.879458 AGCAAATAAACATTAAGGTCTCTCGT 59.121 34.615 0.00 0.00 0.00 4.18
2648 2705 7.308782 AGCAAATAAACATTAAGGTCTCTCG 57.691 36.000 0.00 0.00 0.00 4.04
2683 2740 4.804868 TGGTTAGTTCATTGCATGCAAT 57.195 36.364 34.78 34.78 46.35 3.56
2684 2741 4.804868 ATGGTTAGTTCATTGCATGCAA 57.195 36.364 33.57 33.57 40.47 4.08
2685 2742 4.496360 CAATGGTTAGTTCATTGCATGCA 58.504 39.130 18.46 18.46 42.98 3.96
2704 2761 5.479306 AGACTACTAAACACGACATGCAAT 58.521 37.500 0.00 0.00 0.00 3.56
2705 2762 4.878439 AGACTACTAAACACGACATGCAA 58.122 39.130 0.00 0.00 0.00 4.08
2706 2763 4.022676 TGAGACTACTAAACACGACATGCA 60.023 41.667 0.00 0.00 0.00 3.96
2707 2764 4.482386 TGAGACTACTAAACACGACATGC 58.518 43.478 0.00 0.00 0.00 4.06
2708 2765 6.150318 ACTTGAGACTACTAAACACGACATG 58.850 40.000 0.00 0.00 0.00 3.21
2709 2766 6.016527 TGACTTGAGACTACTAAACACGACAT 60.017 38.462 0.00 0.00 0.00 3.06
2710 2767 5.297527 TGACTTGAGACTACTAAACACGACA 59.702 40.000 0.00 0.00 0.00 4.35
2711 2768 5.755813 TGACTTGAGACTACTAAACACGAC 58.244 41.667 0.00 0.00 0.00 4.34
2712 2769 6.570672 ATGACTTGAGACTACTAAACACGA 57.429 37.500 0.00 0.00 0.00 4.35
2713 2770 8.738199 TTAATGACTTGAGACTACTAAACACG 57.262 34.615 0.00 0.00 0.00 4.49
2717 2774 9.772973 TGCTTTTAATGACTTGAGACTACTAAA 57.227 29.630 0.00 0.00 0.00 1.85
2718 2775 9.944376 ATGCTTTTAATGACTTGAGACTACTAA 57.056 29.630 0.00 0.00 0.00 2.24
2719 2776 9.371136 CATGCTTTTAATGACTTGAGACTACTA 57.629 33.333 0.00 0.00 0.00 1.82
2720 2777 7.148340 GCATGCTTTTAATGACTTGAGACTACT 60.148 37.037 11.37 0.00 0.00 2.57
2721 2778 6.963805 GCATGCTTTTAATGACTTGAGACTAC 59.036 38.462 11.37 0.00 0.00 2.73
2722 2779 6.654582 TGCATGCTTTTAATGACTTGAGACTA 59.345 34.615 20.33 0.00 0.00 2.59
2723 2780 5.474532 TGCATGCTTTTAATGACTTGAGACT 59.525 36.000 20.33 0.00 0.00 3.24
2724 2781 5.570589 GTGCATGCTTTTAATGACTTGAGAC 59.429 40.000 20.33 0.00 0.00 3.36
2725 2782 5.241285 TGTGCATGCTTTTAATGACTTGAGA 59.759 36.000 20.33 0.00 0.00 3.27
2726 2783 5.344128 GTGTGCATGCTTTTAATGACTTGAG 59.656 40.000 20.33 0.00 0.00 3.02
2727 2784 5.221880 GTGTGCATGCTTTTAATGACTTGA 58.778 37.500 20.33 0.00 0.00 3.02
2728 2785 4.386652 GGTGTGCATGCTTTTAATGACTTG 59.613 41.667 20.33 0.00 0.00 3.16
2729 2786 4.559153 GGTGTGCATGCTTTTAATGACTT 58.441 39.130 20.33 0.00 0.00 3.01
2730 2787 3.056607 GGGTGTGCATGCTTTTAATGACT 60.057 43.478 20.33 0.00 0.00 3.41
2731 2788 3.253230 GGGTGTGCATGCTTTTAATGAC 58.747 45.455 20.33 6.41 0.00 3.06
2732 2789 2.896044 TGGGTGTGCATGCTTTTAATGA 59.104 40.909 20.33 0.00 0.00 2.57
2733 2790 3.316071 TGGGTGTGCATGCTTTTAATG 57.684 42.857 20.33 0.00 0.00 1.90
2734 2791 3.514706 TGATGGGTGTGCATGCTTTTAAT 59.485 39.130 20.33 5.68 0.00 1.40
2735 2792 2.896044 TGATGGGTGTGCATGCTTTTAA 59.104 40.909 20.33 0.47 0.00 1.52
2736 2793 2.523245 TGATGGGTGTGCATGCTTTTA 58.477 42.857 20.33 0.00 0.00 1.52
2737 2794 1.340088 TGATGGGTGTGCATGCTTTT 58.660 45.000 20.33 0.00 0.00 2.27
2738 2795 1.479323 GATGATGGGTGTGCATGCTTT 59.521 47.619 20.33 0.00 0.00 3.51
2739 2796 1.108776 GATGATGGGTGTGCATGCTT 58.891 50.000 20.33 0.00 0.00 3.91
2740 2797 0.257905 AGATGATGGGTGTGCATGCT 59.742 50.000 20.33 0.00 0.00 3.79
2741 2798 0.666913 GAGATGATGGGTGTGCATGC 59.333 55.000 11.82 11.82 0.00 4.06
2742 2799 2.343484 AGAGATGATGGGTGTGCATG 57.657 50.000 0.00 0.00 0.00 4.06
2743 2800 4.719026 ATAAGAGATGATGGGTGTGCAT 57.281 40.909 0.00 0.00 0.00 3.96
2744 2801 4.201657 CAATAAGAGATGATGGGTGTGCA 58.798 43.478 0.00 0.00 0.00 4.57
2745 2802 3.567164 CCAATAAGAGATGATGGGTGTGC 59.433 47.826 0.00 0.00 0.00 4.57
2746 2803 4.785301 ACCAATAAGAGATGATGGGTGTG 58.215 43.478 0.00 0.00 35.44 3.82
2747 2804 5.044919 TCAACCAATAAGAGATGATGGGTGT 60.045 40.000 7.91 0.00 46.56 4.16
2748 2805 5.762825 CAACCAATAAGAGATGATGGGTG 57.237 43.478 0.00 0.00 41.98 4.61
2749 2806 5.715439 TCAACCAATAAGAGATGATGGGT 57.285 39.130 0.00 0.00 35.44 4.51
2750 2807 7.886970 ACATATCAACCAATAAGAGATGATGGG 59.113 37.037 0.00 0.00 35.26 4.00
2751 2808 8.859236 ACATATCAACCAATAAGAGATGATGG 57.141 34.615 0.00 0.00 35.26 3.51
2752 2809 9.498176 TGACATATCAACCAATAAGAGATGATG 57.502 33.333 0.00 0.00 35.26 3.07
2773 2830 8.832521 TGTACTTCGTTTCTTGTTTATTGACAT 58.167 29.630 0.00 0.00 0.00 3.06
2774 2831 8.199176 TGTACTTCGTTTCTTGTTTATTGACA 57.801 30.769 0.00 0.00 0.00 3.58
2775 2832 9.493206 TTTGTACTTCGTTTCTTGTTTATTGAC 57.507 29.630 0.00 0.00 0.00 3.18
2782 2839 8.964150 GCATTAATTTGTACTTCGTTTCTTGTT 58.036 29.630 0.00 0.00 0.00 2.83
2783 2840 8.132362 TGCATTAATTTGTACTTCGTTTCTTGT 58.868 29.630 0.00 0.00 0.00 3.16
2784 2841 8.417176 GTGCATTAATTTGTACTTCGTTTCTTG 58.583 33.333 0.00 0.00 30.56 3.02
2785 2842 7.593644 GGTGCATTAATTTGTACTTCGTTTCTT 59.406 33.333 0.00 0.00 33.34 2.52
2786 2843 7.081976 GGTGCATTAATTTGTACTTCGTTTCT 58.918 34.615 0.00 0.00 33.34 2.52
2787 2844 6.032042 CGGTGCATTAATTTGTACTTCGTTTC 59.968 38.462 0.00 0.00 33.34 2.78
2788 2845 5.854338 CGGTGCATTAATTTGTACTTCGTTT 59.146 36.000 0.00 0.00 33.34 3.60
2789 2846 5.049267 ACGGTGCATTAATTTGTACTTCGTT 60.049 36.000 0.00 0.00 30.55 3.85
2790 2847 4.453136 ACGGTGCATTAATTTGTACTTCGT 59.547 37.500 0.00 0.00 33.34 3.85
2791 2848 4.786068 CACGGTGCATTAATTTGTACTTCG 59.214 41.667 0.00 0.00 33.34 3.79
2792 2849 4.557301 GCACGGTGCATTAATTTGTACTTC 59.443 41.667 27.10 0.00 44.26 3.01
2793 2850 4.481463 GCACGGTGCATTAATTTGTACTT 58.519 39.130 27.10 0.00 44.26 2.24
2794 2851 4.091453 GCACGGTGCATTAATTTGTACT 57.909 40.909 27.10 0.00 44.26 2.73
2807 2864 0.666374 AAAACACTTAGGCACGGTGC 59.334 50.000 24.43 24.43 44.08 5.01
2808 2865 1.001815 CCAAAACACTTAGGCACGGTG 60.002 52.381 3.15 3.15 37.05 4.94
2809 2866 1.314730 CCAAAACACTTAGGCACGGT 58.685 50.000 0.00 0.00 0.00 4.83
2810 2867 0.596082 CCCAAAACACTTAGGCACGG 59.404 55.000 0.00 0.00 0.00 4.94
2811 2868 1.600023 TCCCAAAACACTTAGGCACG 58.400 50.000 0.00 0.00 0.00 5.34
2812 2869 5.914898 ATAATCCCAAAACACTTAGGCAC 57.085 39.130 0.00 0.00 0.00 5.01
2813 2870 6.295575 CCAAATAATCCCAAAACACTTAGGCA 60.296 38.462 0.00 0.00 0.00 4.75
2814 2871 6.106003 CCAAATAATCCCAAAACACTTAGGC 58.894 40.000 0.00 0.00 0.00 3.93
2815 2872 7.239763 ACCAAATAATCCCAAAACACTTAGG 57.760 36.000 0.00 0.00 0.00 2.69
2816 2873 9.554395 AAAACCAAATAATCCCAAAACACTTAG 57.446 29.630 0.00 0.00 0.00 2.18
2817 2874 9.549078 GAAAACCAAATAATCCCAAAACACTTA 57.451 29.630 0.00 0.00 0.00 2.24
2818 2875 7.225734 CGAAAACCAAATAATCCCAAAACACTT 59.774 33.333 0.00 0.00 0.00 3.16
2819 2876 6.704050 CGAAAACCAAATAATCCCAAAACACT 59.296 34.615 0.00 0.00 0.00 3.55
2820 2877 6.480651 ACGAAAACCAAATAATCCCAAAACAC 59.519 34.615 0.00 0.00 0.00 3.32
2821 2878 6.583562 ACGAAAACCAAATAATCCCAAAACA 58.416 32.000 0.00 0.00 0.00 2.83
2822 2879 8.590719 TTACGAAAACCAAATAATCCCAAAAC 57.409 30.769 0.00 0.00 0.00 2.43
2823 2880 8.639761 TCTTACGAAAACCAAATAATCCCAAAA 58.360 29.630 0.00 0.00 0.00 2.44
2824 2881 8.179509 TCTTACGAAAACCAAATAATCCCAAA 57.820 30.769 0.00 0.00 0.00 3.28
2825 2882 7.762588 TCTTACGAAAACCAAATAATCCCAA 57.237 32.000 0.00 0.00 0.00 4.12
2826 2883 7.612244 TCATCTTACGAAAACCAAATAATCCCA 59.388 33.333 0.00 0.00 0.00 4.37
2827 2884 7.913821 GTCATCTTACGAAAACCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
2828 2885 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
2845 2902 6.175471 TCGTCTAGGTGTGTAAGTCATCTTA 58.825 40.000 0.00 0.00 35.36 2.10
2846 2903 5.008331 TCGTCTAGGTGTGTAAGTCATCTT 58.992 41.667 0.00 0.00 37.65 2.40
2847 2904 4.586884 TCGTCTAGGTGTGTAAGTCATCT 58.413 43.478 0.00 0.00 0.00 2.90
2848 2905 4.959596 TCGTCTAGGTGTGTAAGTCATC 57.040 45.455 0.00 0.00 0.00 2.92
2849 2906 4.158025 CCTTCGTCTAGGTGTGTAAGTCAT 59.842 45.833 0.00 0.00 0.00 3.06
2850 2907 3.504906 CCTTCGTCTAGGTGTGTAAGTCA 59.495 47.826 0.00 0.00 0.00 3.41
2851 2908 3.755378 TCCTTCGTCTAGGTGTGTAAGTC 59.245 47.826 0.00 0.00 36.63 3.01
2852 2909 3.759581 TCCTTCGTCTAGGTGTGTAAGT 58.240 45.455 0.00 0.00 36.63 2.24
2853 2910 4.217983 ACTTCCTTCGTCTAGGTGTGTAAG 59.782 45.833 0.00 0.00 36.63 2.34
2854 2911 4.147321 ACTTCCTTCGTCTAGGTGTGTAA 58.853 43.478 0.00 0.00 36.63 2.41
2855 2912 3.759581 ACTTCCTTCGTCTAGGTGTGTA 58.240 45.455 0.00 0.00 36.63 2.90
2856 2913 2.595238 ACTTCCTTCGTCTAGGTGTGT 58.405 47.619 0.00 0.00 36.63 3.72
2857 2914 3.757493 ACTACTTCCTTCGTCTAGGTGTG 59.243 47.826 0.00 0.00 36.63 3.82
2858 2915 4.031636 ACTACTTCCTTCGTCTAGGTGT 57.968 45.455 0.00 0.00 36.63 4.16
2859 2916 4.734917 CAACTACTTCCTTCGTCTAGGTG 58.265 47.826 0.00 0.00 36.63 4.00
2860 2917 3.193056 GCAACTACTTCCTTCGTCTAGGT 59.807 47.826 0.00 0.00 36.63 3.08
2861 2918 3.444388 AGCAACTACTTCCTTCGTCTAGG 59.556 47.826 0.00 0.00 36.59 3.02
2862 2919 4.705337 AGCAACTACTTCCTTCGTCTAG 57.295 45.455 0.00 0.00 0.00 2.43
2863 2920 4.639310 CCTAGCAACTACTTCCTTCGTCTA 59.361 45.833 0.00 0.00 0.00 2.59
2864 2921 3.444388 CCTAGCAACTACTTCCTTCGTCT 59.556 47.826 0.00 0.00 0.00 4.18
2865 2922 3.771798 CCTAGCAACTACTTCCTTCGTC 58.228 50.000 0.00 0.00 0.00 4.20
2866 2923 2.094130 GCCTAGCAACTACTTCCTTCGT 60.094 50.000 0.00 0.00 0.00 3.85
2867 2924 2.166664 AGCCTAGCAACTACTTCCTTCG 59.833 50.000 0.00 0.00 0.00 3.79
2868 2925 3.897141 AGCCTAGCAACTACTTCCTTC 57.103 47.619 0.00 0.00 0.00 3.46
2869 2926 3.307762 CCAAGCCTAGCAACTACTTCCTT 60.308 47.826 0.00 0.00 0.00 3.36
2870 2927 2.237392 CCAAGCCTAGCAACTACTTCCT 59.763 50.000 0.00 0.00 0.00 3.36
2871 2928 2.236395 TCCAAGCCTAGCAACTACTTCC 59.764 50.000 0.00 0.00 0.00 3.46
2872 2929 3.611766 TCCAAGCCTAGCAACTACTTC 57.388 47.619 0.00 0.00 0.00 3.01
2873 2930 3.328050 ACTTCCAAGCCTAGCAACTACTT 59.672 43.478 0.00 0.00 0.00 2.24
2874 2931 2.907042 ACTTCCAAGCCTAGCAACTACT 59.093 45.455 0.00 0.00 0.00 2.57
2875 2932 3.336138 ACTTCCAAGCCTAGCAACTAC 57.664 47.619 0.00 0.00 0.00 2.73
2876 2933 3.559171 CCAACTTCCAAGCCTAGCAACTA 60.559 47.826 0.00 0.00 0.00 2.24
2877 2934 2.508526 CAACTTCCAAGCCTAGCAACT 58.491 47.619 0.00 0.00 0.00 3.16
2878 2935 1.541588 CCAACTTCCAAGCCTAGCAAC 59.458 52.381 0.00 0.00 0.00 4.17
2879 2936 1.423541 TCCAACTTCCAAGCCTAGCAA 59.576 47.619 0.00 0.00 0.00 3.91
2880 2937 1.064003 TCCAACTTCCAAGCCTAGCA 58.936 50.000 0.00 0.00 0.00 3.49
2890 2947 8.433421 TGTCGATTATTCTATTTCCAACTTCC 57.567 34.615 0.00 0.00 0.00 3.46
3012 3072 4.853743 GCAAGCTAGCACAACAATAAACTC 59.146 41.667 18.83 0.00 0.00 3.01
3044 3105 3.683340 GCTAAGGAGAAAACGACGGATTT 59.317 43.478 0.00 0.00 0.00 2.17
3045 3106 3.056035 AGCTAAGGAGAAAACGACGGATT 60.056 43.478 0.00 0.00 0.00 3.01
3148 3209 7.392393 TCTGTAGTGCTGTAGTACTGTTAATCA 59.608 37.037 5.39 0.00 41.09 2.57
3176 3237 6.462552 TGTACAGAGGAGAAGATGATGAAG 57.537 41.667 0.00 0.00 0.00 3.02
3181 3242 6.019656 ACCTATGTACAGAGGAGAAGATGA 57.980 41.667 36.91 0.00 42.25 2.92
3184 3245 5.452341 TGACCTATGTACAGAGGAGAAGA 57.548 43.478 36.91 15.92 42.25 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.