Multiple sequence alignment - TraesCS3B01G376300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G376300 chr3B 100.000 5430 0 0 1 5430 592613412 592607983 0.000000e+00 10028
1 TraesCS3B01G376300 chr3B 97.238 181 4 1 2772 2951 783212874 783212694 6.830000e-79 305
2 TraesCS3B01G376300 chr3B 94.764 191 8 2 2751 2941 788213073 788213261 4.110000e-76 296
3 TraesCS3B01G376300 chr3A 93.005 2745 114 22 1 2721 594003851 594001161 0.000000e+00 3934
4 TraesCS3B01G376300 chr3A 95.376 1276 44 10 3129 4396 594000970 593999702 0.000000e+00 2015
5 TraesCS3B01G376300 chr3A 90.737 475 18 9 4530 4982 593999609 593999139 1.290000e-170 610
6 TraesCS3B01G376300 chr3A 98.101 158 2 1 2935 3091 594001122 594000965 1.930000e-69 274
7 TraesCS3B01G376300 chr3A 87.222 180 18 3 4980 5154 593999025 593998846 3.320000e-47 200
8 TraesCS3B01G376300 chr3D 94.671 1933 82 10 243 2169 450482378 450480461 0.000000e+00 2979
9 TraesCS3B01G376300 chr3D 91.495 1987 93 26 3127 5046 450479217 450477240 0.000000e+00 2663
10 TraesCS3B01G376300 chr3D 97.682 604 8 5 2172 2774 450480035 450479437 0.000000e+00 1033
11 TraesCS3B01G376300 chr3D 95.169 207 10 0 1 207 450483132 450482926 1.460000e-85 327
12 TraesCS3B01G376300 chr3D 97.802 182 2 2 2935 3114 450479438 450479257 4.080000e-81 313
13 TraesCS3B01G376300 chr6A 92.424 264 15 4 5172 5430 98027314 98027577 6.640000e-99 372
14 TraesCS3B01G376300 chr7D 92.105 266 14 3 5172 5430 8991709 8991444 8.590000e-98 368
15 TraesCS3B01G376300 chrUn 92.015 263 17 3 5172 5430 451282004 451281742 3.090000e-97 366
16 TraesCS3B01G376300 chr4A 92.015 263 17 3 5172 5430 605143763 605143501 3.090000e-97 366
17 TraesCS3B01G376300 chr4A 97.701 174 4 0 2773 2946 735482000 735481827 3.180000e-77 300
18 TraesCS3B01G376300 chr2A 91.985 262 15 5 5172 5430 668221168 668221426 4.000000e-96 363
19 TraesCS3B01G376300 chr2A 98.256 172 2 1 2773 2943 113822458 113822287 3.180000e-77 300
20 TraesCS3B01G376300 chr1D 91.954 261 17 2 5172 5430 21844913 21845171 4.000000e-96 363
21 TraesCS3B01G376300 chr6B 91.603 262 17 5 5172 5430 528908262 528908521 1.860000e-94 357
22 TraesCS3B01G376300 chr6B 91.571 261 18 4 5172 5430 701069483 701069225 1.860000e-94 357
23 TraesCS3B01G376300 chr1A 88.136 295 28 7 5140 5430 529324159 529323868 1.450000e-90 344
24 TraesCS3B01G376300 chr1A 98.824 170 2 0 2773 2942 526575522 526575691 2.460000e-78 303
25 TraesCS3B01G376300 chr1B 98.295 176 3 0 2773 2948 74246723 74246898 5.280000e-80 309
26 TraesCS3B01G376300 chr1B 97.222 180 3 2 2771 2949 67053883 67054061 2.460000e-78 303
27 TraesCS3B01G376300 chr2B 99.401 167 1 0 2772 2938 161144170 161144004 2.460000e-78 303
28 TraesCS3B01G376300 chr2B 98.193 166 3 0 2771 2936 8938686 8938521 1.910000e-74 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G376300 chr3B 592607983 592613412 5429 True 10028.0 10028 100.0000 1 5430 1 chr3B.!!$R1 5429
1 TraesCS3B01G376300 chr3A 593998846 594003851 5005 True 1406.6 3934 92.8882 1 5154 5 chr3A.!!$R1 5153
2 TraesCS3B01G376300 chr3D 450477240 450483132 5892 True 1463.0 2979 95.3638 1 5046 5 chr3D.!!$R1 5045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 783 1.065851 TGCGGCTCATTACGATTACGA 59.934 47.619 0.00 0.0 42.66 3.43 F
990 1512 1.229428 TTCTGCAGGAGCTTTTCGTG 58.771 50.000 15.13 0.0 43.03 4.35 F
1638 2160 0.409092 TCCCGTCCAACCAGGTACTA 59.591 55.000 0.00 0.0 36.02 1.82 F
3458 4513 0.831307 GTAGGCCTTTCCTCACGGAT 59.169 55.000 12.58 0.0 43.20 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1131 1653 0.036732 TGAAACTTGGAGGCGCTGAT 59.963 50.000 7.64 0.0 0.00 2.90 R
2773 3757 1.558294 GTATTTGGGAACGGAGGGAGT 59.442 52.381 0.00 0.0 0.00 3.85 R
3588 4643 0.743701 GCTAGAGACTCCACGACGGA 60.744 60.000 0.00 0.0 43.61 4.69 R
4485 5580 0.456312 GTGGACGTGACGATGAGGTC 60.456 60.000 13.70 0.0 37.45 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 176 2.039974 TCGGCGTGCATGCTGATTT 61.040 52.632 33.56 0.00 45.03 2.17
177 178 1.135699 CGGCGTGCATGCTGATTTTC 61.136 55.000 31.99 12.03 44.17 2.29
198 199 4.138722 CGAGATACGCGATGCCTC 57.861 61.111 15.93 12.39 34.51 4.70
213 214 1.860078 CCTCGAGCGTTTTGGTGAC 59.140 57.895 6.99 0.00 0.00 3.67
218 219 3.666253 GCGTTTTGGTGACCCCCG 61.666 66.667 0.00 0.00 0.00 5.73
265 778 4.033894 GCTGCGGCTCATTACGAT 57.966 55.556 11.21 0.00 35.22 3.73
266 779 2.311294 GCTGCGGCTCATTACGATT 58.689 52.632 11.21 0.00 35.22 3.34
267 780 1.497991 GCTGCGGCTCATTACGATTA 58.502 50.000 11.21 0.00 35.22 1.75
268 781 1.192534 GCTGCGGCTCATTACGATTAC 59.807 52.381 11.21 0.00 35.22 1.89
269 782 1.452025 CTGCGGCTCATTACGATTACG 59.548 52.381 0.00 0.00 45.75 3.18
270 783 1.065851 TGCGGCTCATTACGATTACGA 59.934 47.619 0.00 0.00 42.66 3.43
275 788 2.049228 CTCATTACGATTACGACCGCC 58.951 52.381 0.00 0.00 42.66 6.13
277 790 2.877786 TCATTACGATTACGACCGCCTA 59.122 45.455 0.00 0.00 42.66 3.93
467 980 6.163135 AGTTGGTGGCTTGATAGATAGTAC 57.837 41.667 0.00 0.00 0.00 2.73
469 982 7.067421 AGTTGGTGGCTTGATAGATAGTACTA 58.933 38.462 4.77 4.77 0.00 1.82
475 988 9.941325 GTGGCTTGATAGATAGTACTAGTAGTA 57.059 37.037 17.75 17.75 0.00 1.82
566 1079 1.748493 GGAAATTGAATGTGGCGCCTA 59.252 47.619 29.70 17.50 0.00 3.93
579 1092 2.896801 CGCCTATGGACCAATGCGC 61.897 63.158 18.61 0.00 35.33 6.09
615 1131 3.491104 CCACGTATCTTTGGTCCTAGCTC 60.491 52.174 0.00 0.00 0.00 4.09
692 1208 3.681417 GCAATGATTTTTGGAGGCTTCAC 59.319 43.478 0.00 0.00 0.00 3.18
698 1214 3.297134 TTTTGGAGGCTTCACTTCAGT 57.703 42.857 0.00 0.00 0.00 3.41
699 1215 4.431416 TTTTGGAGGCTTCACTTCAGTA 57.569 40.909 0.00 0.00 0.00 2.74
716 1232 9.057089 CACTTCAGTAGAGGAATTTAGTTGTTT 57.943 33.333 0.00 0.00 0.00 2.83
762 1278 7.438160 CAGATCAATTCATAGGCGTTGTACTTA 59.562 37.037 0.00 0.00 0.00 2.24
789 1306 2.834638 AAATCATAGCTGGGTTGGCT 57.165 45.000 0.00 0.00 43.02 4.75
801 1318 3.989787 TTGGCTGCTCGTGCGAGA 61.990 61.111 23.57 9.10 44.53 4.04
837 1354 5.593679 TTGTAGCTTAGGTGTACTGGATC 57.406 43.478 0.00 0.00 0.00 3.36
990 1512 1.229428 TTCTGCAGGAGCTTTTCGTG 58.771 50.000 15.13 0.00 43.03 4.35
1017 1539 1.884579 CATATGATGGGCTGCTTCACC 59.115 52.381 0.00 0.00 0.00 4.02
1068 1590 1.856597 CTTGTTGCAAGCAAGAAGCAC 59.143 47.619 25.12 8.24 45.58 4.40
1131 1653 1.067425 GCTCATGTGCCATCTTTGCAA 60.067 47.619 8.59 0.00 41.06 4.08
1221 1743 2.341543 CGTGTGCTGTCTGCTCCT 59.658 61.111 3.20 0.00 43.37 3.69
1224 1746 1.005748 TGTGCTGTCTGCTCCTTCG 60.006 57.895 3.20 0.00 43.37 3.79
1314 1836 2.439507 CAAGGGAGGAGCTATTAAGGCA 59.560 50.000 6.09 0.00 0.00 4.75
1410 1932 3.018856 CAAGGCTATCAATGCAAGTGGA 58.981 45.455 0.00 0.00 29.44 4.02
1446 1968 2.284921 CCTCTCCCACTGCCTCCA 60.285 66.667 0.00 0.00 0.00 3.86
1491 2013 8.006298 AGAACTTCTCGTATGATGAGATTTCT 57.994 34.615 12.84 12.84 39.75 2.52
1520 2042 2.673368 GCCAGTGGTTTTCTAGTGATCG 59.327 50.000 11.74 0.00 34.28 3.69
1527 2049 3.432252 GGTTTTCTAGTGATCGGTGTGTG 59.568 47.826 0.00 0.00 0.00 3.82
1530 2052 1.816835 TCTAGTGATCGGTGTGTGTCC 59.183 52.381 0.00 0.00 0.00 4.02
1638 2160 0.409092 TCCCGTCCAACCAGGTACTA 59.591 55.000 0.00 0.00 36.02 1.82
1647 2169 6.713903 CGTCCAACCAGGTACTATTCTCTATA 59.286 42.308 0.00 0.00 36.02 1.31
1686 2216 9.547279 AATACTTTCCCTTCTTATTTTGGATGT 57.453 29.630 0.00 0.00 0.00 3.06
1687 2217 7.855784 ACTTTCCCTTCTTATTTTGGATGTT 57.144 32.000 0.00 0.00 0.00 2.71
1688 2218 8.950007 ACTTTCCCTTCTTATTTTGGATGTTA 57.050 30.769 0.00 0.00 0.00 2.41
1689 2219 8.803235 ACTTTCCCTTCTTATTTTGGATGTTAC 58.197 33.333 0.00 0.00 0.00 2.50
1690 2220 6.995511 TCCCTTCTTATTTTGGATGTTACG 57.004 37.500 0.00 0.00 0.00 3.18
1691 2221 5.883673 TCCCTTCTTATTTTGGATGTTACGG 59.116 40.000 0.00 0.00 0.00 4.02
1692 2222 5.650703 CCCTTCTTATTTTGGATGTTACGGT 59.349 40.000 0.00 0.00 0.00 4.83
1700 2230 1.484653 TGGATGTTACGGTCATGGAGG 59.515 52.381 0.00 0.00 0.00 4.30
1734 2264 1.476845 TTGCTAGTCCGGCCTGTTCA 61.477 55.000 0.00 0.00 0.00 3.18
1763 2293 4.775780 ACACTTTCTGGCACACCTACTATA 59.224 41.667 0.00 0.00 36.63 1.31
1899 2429 5.297776 GCTGTTTACATCTAGGCATGTGATT 59.702 40.000 7.21 0.00 37.57 2.57
2136 2681 3.732721 GTGTTTCATGCTTTCTCTTGCAC 59.267 43.478 0.00 0.00 42.26 4.57
2137 2682 3.380954 TGTTTCATGCTTTCTCTTGCACA 59.619 39.130 0.00 0.00 42.26 4.57
2139 2684 2.574450 TCATGCTTTCTCTTGCACACA 58.426 42.857 0.00 0.00 42.26 3.72
2149 2694 3.820467 TCTCTTGCACACAATTTAGTGGG 59.180 43.478 8.61 2.09 45.66 4.61
2319 3290 7.116805 CACCTTTCACCATTTTAGAGAAATTGC 59.883 37.037 0.00 0.00 0.00 3.56
2689 3660 4.909088 TGAAGGACCCTTTCAGGTAACTTA 59.091 41.667 2.43 0.00 41.42 2.24
2713 3684 2.035832 CCAAACCCTTTGACATGACCAC 59.964 50.000 0.00 0.00 43.26 4.16
2720 3691 4.062293 CCTTTGACATGACCACGAAGTTA 58.938 43.478 0.00 0.00 41.61 2.24
2721 3692 4.695455 CCTTTGACATGACCACGAAGTTAT 59.305 41.667 0.00 0.00 41.61 1.89
2722 3693 5.390885 CCTTTGACATGACCACGAAGTTATG 60.391 44.000 0.00 10.96 41.61 1.90
2723 3694 3.595173 TGACATGACCACGAAGTTATGG 58.405 45.455 0.00 4.41 41.61 2.74
2786 3770 5.548181 ATTTCTTATACTCCCTCCGTTCC 57.452 43.478 0.00 0.00 0.00 3.62
2787 3771 2.954792 TCTTATACTCCCTCCGTTCCC 58.045 52.381 0.00 0.00 0.00 3.97
2788 3772 2.245546 TCTTATACTCCCTCCGTTCCCA 59.754 50.000 0.00 0.00 0.00 4.37
2789 3773 2.852714 TATACTCCCTCCGTTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2790 3774 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2791 3775 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
2792 3776 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2793 3777 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
2794 3778 1.838077 CTCCCTCCGTTCCCAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
2795 3779 2.238898 CTCCCTCCGTTCCCAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
2796 3780 2.026636 TCCCTCCGTTCCCAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
2797 3781 2.290705 CCCTCCGTTCCCAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
2798 3782 3.007635 CCTCCGTTCCCAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
2799 3783 3.307480 CCTCCGTTCCCAAATACTTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2800 3784 4.324267 CTCCGTTCCCAAATACTTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2801 3785 4.721132 TCCGTTCCCAAATACTTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
2802 3786 4.758165 TCCGTTCCCAAATACTTGTCTTTC 59.242 41.667 0.00 0.00 0.00 2.62
2803 3787 4.760204 CCGTTCCCAAATACTTGTCTTTCT 59.240 41.667 0.00 0.00 0.00 2.52
2804 3788 5.935789 CCGTTCCCAAATACTTGTCTTTCTA 59.064 40.000 0.00 0.00 0.00 2.10
2805 3789 6.092259 CCGTTCCCAAATACTTGTCTTTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
2806 3790 6.092259 CGTTCCCAAATACTTGTCTTTCTAGG 59.908 42.308 0.00 0.00 0.00 3.02
2807 3791 5.497474 TCCCAAATACTTGTCTTTCTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
2808 3792 5.013704 TCCCAAATACTTGTCTTTCTAGGCA 59.986 40.000 0.00 0.00 33.22 4.75
2809 3793 5.888161 CCCAAATACTTGTCTTTCTAGGCAT 59.112 40.000 0.00 0.00 35.56 4.40
2810 3794 6.378280 CCCAAATACTTGTCTTTCTAGGCATT 59.622 38.462 0.00 0.00 35.56 3.56
2811 3795 7.093771 CCCAAATACTTGTCTTTCTAGGCATTT 60.094 37.037 0.00 0.00 35.56 2.32
2812 3796 7.970614 CCAAATACTTGTCTTTCTAGGCATTTC 59.029 37.037 0.00 0.00 35.56 2.17
2813 3797 8.514594 CAAATACTTGTCTTTCTAGGCATTTCA 58.485 33.333 0.00 0.00 35.56 2.69
2814 3798 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2815 3799 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
2816 3800 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
2817 3801 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
2818 3802 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
2819 3803 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
2820 3804 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
2821 3805 6.151817 GTCTTTCTAGGCATTTCAAATGGACT 59.848 38.462 12.14 3.08 0.00 3.85
2822 3806 6.375455 TCTTTCTAGGCATTTCAAATGGACTC 59.625 38.462 12.14 0.00 0.00 3.36
2823 3807 5.178096 TCTAGGCATTTCAAATGGACTCA 57.822 39.130 12.14 0.00 0.00 3.41
2824 3808 5.569355 TCTAGGCATTTCAAATGGACTCAA 58.431 37.500 12.14 0.00 0.00 3.02
2825 3809 4.525912 AGGCATTTCAAATGGACTCAAC 57.474 40.909 12.14 0.00 0.00 3.18
2826 3810 3.896888 AGGCATTTCAAATGGACTCAACA 59.103 39.130 12.14 0.00 0.00 3.33
2827 3811 4.529377 AGGCATTTCAAATGGACTCAACAT 59.471 37.500 12.14 0.00 0.00 2.71
2828 3812 5.716228 AGGCATTTCAAATGGACTCAACATA 59.284 36.000 12.14 0.00 0.00 2.29
2829 3813 5.807011 GGCATTTCAAATGGACTCAACATAC 59.193 40.000 12.14 0.00 0.00 2.39
2830 3814 5.512788 GCATTTCAAATGGACTCAACATACG 59.487 40.000 12.14 0.00 0.00 3.06
2831 3815 5.621197 TTTCAAATGGACTCAACATACGG 57.379 39.130 0.00 0.00 0.00 4.02
2832 3816 4.545208 TCAAATGGACTCAACATACGGA 57.455 40.909 0.00 0.00 0.00 4.69
2833 3817 5.097742 TCAAATGGACTCAACATACGGAT 57.902 39.130 0.00 0.00 0.00 4.18
2834 3818 4.875536 TCAAATGGACTCAACATACGGATG 59.124 41.667 5.94 5.94 39.16 3.51
2836 3820 5.607939 AATGGACTCAACATACGGATGTA 57.392 39.130 15.10 0.00 45.93 2.29
2837 3821 5.808366 ATGGACTCAACATACGGATGTAT 57.192 39.130 15.10 0.00 45.93 2.29
2874 3858 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
2875 3859 5.536554 AGTGTAGATTCACTCATTTTGCG 57.463 39.130 0.00 0.00 44.07 4.85
2876 3860 4.091424 GTGTAGATTCACTCATTTTGCGC 58.909 43.478 0.00 0.00 35.68 6.09
2877 3861 4.002982 TGTAGATTCACTCATTTTGCGCT 58.997 39.130 9.73 0.00 0.00 5.92
2878 3862 3.482722 AGATTCACTCATTTTGCGCTG 57.517 42.857 9.73 0.00 0.00 5.18
2879 3863 2.816087 AGATTCACTCATTTTGCGCTGT 59.184 40.909 9.73 0.00 0.00 4.40
2880 3864 4.002982 AGATTCACTCATTTTGCGCTGTA 58.997 39.130 9.73 0.00 0.00 2.74
2881 3865 4.637534 AGATTCACTCATTTTGCGCTGTAT 59.362 37.500 9.73 0.00 0.00 2.29
2882 3866 3.745332 TCACTCATTTTGCGCTGTATG 57.255 42.857 9.73 9.31 0.00 2.39
2883 3867 3.073678 TCACTCATTTTGCGCTGTATGT 58.926 40.909 9.73 0.00 0.00 2.29
2884 3868 4.249661 TCACTCATTTTGCGCTGTATGTA 58.750 39.130 9.73 0.00 0.00 2.29
2885 3869 4.329801 TCACTCATTTTGCGCTGTATGTAG 59.670 41.667 9.73 10.38 0.00 2.74
2886 3870 4.093408 CACTCATTTTGCGCTGTATGTAGT 59.907 41.667 9.73 10.92 0.00 2.73
2887 3871 4.330074 ACTCATTTTGCGCTGTATGTAGTC 59.670 41.667 9.73 0.00 0.00 2.59
2888 3872 4.249661 TCATTTTGCGCTGTATGTAGTCA 58.750 39.130 9.73 0.00 0.00 3.41
2889 3873 4.092821 TCATTTTGCGCTGTATGTAGTCAC 59.907 41.667 9.73 0.00 0.00 3.67
2890 3874 3.313012 TTTGCGCTGTATGTAGTCACT 57.687 42.857 9.73 0.00 0.00 3.41
2891 3875 3.313012 TTGCGCTGTATGTAGTCACTT 57.687 42.857 9.73 0.00 0.00 3.16
2892 3876 2.606108 TGCGCTGTATGTAGTCACTTG 58.394 47.619 9.73 0.00 0.00 3.16
2893 3877 2.029380 TGCGCTGTATGTAGTCACTTGT 60.029 45.455 9.73 0.00 0.00 3.16
2894 3878 2.993899 GCGCTGTATGTAGTCACTTGTT 59.006 45.455 0.00 0.00 0.00 2.83
2895 3879 3.181530 GCGCTGTATGTAGTCACTTGTTG 60.182 47.826 0.00 0.00 0.00 3.33
2896 3880 4.234574 CGCTGTATGTAGTCACTTGTTGA 58.765 43.478 0.00 0.00 0.00 3.18
2897 3881 4.684242 CGCTGTATGTAGTCACTTGTTGAA 59.316 41.667 0.00 0.00 35.39 2.69
2898 3882 5.176774 CGCTGTATGTAGTCACTTGTTGAAA 59.823 40.000 0.00 0.00 35.39 2.69
2899 3883 6.128553 CGCTGTATGTAGTCACTTGTTGAAAT 60.129 38.462 0.00 0.00 35.39 2.17
2900 3884 7.237173 GCTGTATGTAGTCACTTGTTGAAATC 58.763 38.462 0.00 0.00 35.39 2.17
2901 3885 7.118390 GCTGTATGTAGTCACTTGTTGAAATCT 59.882 37.037 0.00 0.00 35.39 2.40
2902 3886 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
2903 3887 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
2904 3888 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2905 3889 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2906 3890 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2907 3891 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2908 3892 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2909 3893 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2910 3894 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2911 3895 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2912 3896 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2913 3897 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2914 3898 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
2915 3899 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2926 3910 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
2927 3911 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
2928 3912 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2929 3913 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2930 3914 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2931 3915 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2932 3916 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2933 3917 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2965 3949 5.173774 ACATGCATTTCTATTTACAGGCG 57.826 39.130 0.00 0.00 0.00 5.52
3086 4070 5.957771 AAGATCTAAGGCATCTGTGGTAA 57.042 39.130 0.00 0.00 30.62 2.85
3087 4071 5.543507 AGATCTAAGGCATCTGTGGTAAG 57.456 43.478 0.00 0.00 0.00 2.34
3088 4072 4.965532 AGATCTAAGGCATCTGTGGTAAGT 59.034 41.667 0.00 0.00 0.00 2.24
3089 4073 5.426833 AGATCTAAGGCATCTGTGGTAAGTT 59.573 40.000 0.00 0.00 0.00 2.66
3090 4074 5.086104 TCTAAGGCATCTGTGGTAAGTTC 57.914 43.478 0.00 0.00 0.00 3.01
3091 4075 2.789409 AGGCATCTGTGGTAAGTTCC 57.211 50.000 0.00 0.00 0.00 3.62
3092 4076 2.269940 AGGCATCTGTGGTAAGTTCCT 58.730 47.619 0.00 0.00 0.00 3.36
3093 4077 2.644798 AGGCATCTGTGGTAAGTTCCTT 59.355 45.455 0.00 0.00 0.00 3.36
3094 4078 3.074538 AGGCATCTGTGGTAAGTTCCTTT 59.925 43.478 0.00 0.00 0.00 3.11
3095 4079 3.826729 GGCATCTGTGGTAAGTTCCTTTT 59.173 43.478 0.00 0.00 0.00 2.27
3096 4080 4.321230 GGCATCTGTGGTAAGTTCCTTTTG 60.321 45.833 0.00 0.00 0.00 2.44
3097 4081 4.518970 GCATCTGTGGTAAGTTCCTTTTGA 59.481 41.667 0.00 0.00 0.00 2.69
3098 4082 5.009610 GCATCTGTGGTAAGTTCCTTTTGAA 59.990 40.000 0.00 0.00 0.00 2.69
3099 4083 6.460953 GCATCTGTGGTAAGTTCCTTTTGAAA 60.461 38.462 0.00 0.00 33.94 2.69
3100 4084 7.661040 CATCTGTGGTAAGTTCCTTTTGAAAT 58.339 34.615 0.00 0.00 33.94 2.17
3101 4085 7.654022 TCTGTGGTAAGTTCCTTTTGAAATT 57.346 32.000 0.00 0.00 43.23 1.82
3102 4086 8.073467 TCTGTGGTAAGTTCCTTTTGAAATTT 57.927 30.769 0.00 0.00 38.01 1.82
3103 4087 7.978975 TCTGTGGTAAGTTCCTTTTGAAATTTG 59.021 33.333 0.00 0.00 38.01 2.32
3104 4088 7.841956 TGTGGTAAGTTCCTTTTGAAATTTGA 58.158 30.769 0.00 0.00 38.01 2.69
3105 4089 8.314751 TGTGGTAAGTTCCTTTTGAAATTTGAA 58.685 29.630 0.00 0.00 38.01 2.69
3106 4090 9.157104 GTGGTAAGTTCCTTTTGAAATTTGAAA 57.843 29.630 0.00 0.00 38.01 2.69
3107 4091 9.726438 TGGTAAGTTCCTTTTGAAATTTGAAAA 57.274 25.926 13.73 13.73 38.01 2.29
3108 4092 9.982291 GGTAAGTTCCTTTTGAAATTTGAAAAC 57.018 29.630 10.93 3.56 38.01 2.43
3111 4095 8.846943 AGTTCCTTTTGAAATTTGAAAACTGT 57.153 26.923 10.93 0.00 33.94 3.55
3112 4096 9.936759 AGTTCCTTTTGAAATTTGAAAACTGTA 57.063 25.926 10.93 0.00 33.94 2.74
3114 4098 8.940768 TCCTTTTGAAATTTGAAAACTGTAGG 57.059 30.769 10.93 10.43 0.00 3.18
3115 4099 8.536175 TCCTTTTGAAATTTGAAAACTGTAGGT 58.464 29.630 10.93 0.00 0.00 3.08
3116 4100 8.817100 CCTTTTGAAATTTGAAAACTGTAGGTC 58.183 33.333 10.93 0.00 0.00 3.85
3117 4101 9.364989 CTTTTGAAATTTGAAAACTGTAGGTCA 57.635 29.630 10.93 0.00 0.00 4.02
3118 4102 9.883142 TTTTGAAATTTGAAAACTGTAGGTCAT 57.117 25.926 10.93 0.00 0.00 3.06
3124 4108 9.975218 AATTTGAAAACTGTAGGTCATATAGGT 57.025 29.630 0.00 0.00 0.00 3.08
3125 4109 9.614792 ATTTGAAAACTGTAGGTCATATAGGTC 57.385 33.333 0.00 0.00 0.00 3.85
3126 4110 7.727578 TGAAAACTGTAGGTCATATAGGTCA 57.272 36.000 0.00 0.00 0.00 4.02
3127 4111 8.319057 TGAAAACTGTAGGTCATATAGGTCAT 57.681 34.615 0.00 0.00 0.00 3.06
3359 4414 3.074412 CAACGTATGGAGCTTTGGAGTT 58.926 45.455 0.00 0.00 0.00 3.01
3458 4513 0.831307 GTAGGCCTTTCCTCACGGAT 59.169 55.000 12.58 0.00 43.20 4.18
3527 4582 2.187946 CCCAAGGCTGCTAGGACG 59.812 66.667 0.00 0.00 0.00 4.79
3588 4643 0.460311 CGAAAGGCCTACGATGAGGT 59.540 55.000 22.39 0.00 39.02 3.85
3611 4666 1.813786 GTCGTGGAGTCTCTAGCAAGT 59.186 52.381 0.00 0.00 0.00 3.16
3689 4744 4.878397 CCGAGGAAAGTGATGCTAAAATCT 59.122 41.667 0.00 0.00 0.00 2.40
3701 4756 7.436673 GTGATGCTAAAATCTACGAGTCTCAAT 59.563 37.037 0.00 0.00 0.00 2.57
3716 4771 3.507233 GTCTCAATGGCATTGTTCCTCAA 59.493 43.478 32.66 15.62 41.02 3.02
3725 4780 3.366679 GCATTGTTCCTCAACATCCTGTG 60.367 47.826 0.00 0.00 42.28 3.66
3794 4849 1.355563 GAGATCATCGACGTCCGCA 59.644 57.895 10.58 0.00 38.37 5.69
3865 4920 4.524328 CAGGGTAAGCTTGGTCAAGAAATT 59.476 41.667 9.86 7.83 40.79 1.82
3869 4924 2.601905 AGCTTGGTCAAGAAATTGCCT 58.398 42.857 14.20 0.00 40.79 4.75
3870 4925 2.967887 AGCTTGGTCAAGAAATTGCCTT 59.032 40.909 14.20 0.00 40.79 4.35
3872 4927 3.006217 GCTTGGTCAAGAAATTGCCTTCT 59.994 43.478 14.20 0.00 40.79 2.85
3873 4928 4.553323 CTTGGTCAAGAAATTGCCTTCTG 58.447 43.478 4.82 0.00 40.79 3.02
3874 4929 2.892852 TGGTCAAGAAATTGCCTTCTGG 59.107 45.455 0.00 0.00 35.79 3.86
3875 4930 2.893489 GGTCAAGAAATTGCCTTCTGGT 59.107 45.455 0.00 0.00 35.79 4.00
3880 4935 5.415701 TCAAGAAATTGCCTTCTGGTATCAC 59.584 40.000 0.00 0.00 35.79 3.06
3893 4948 1.379443 TATCACGCGGAGACCTGGT 60.379 57.895 12.47 0.00 0.00 4.00
3920 4975 7.066525 GTCGAGGGTTTTTGATTGTCCATATAA 59.933 37.037 0.00 0.00 0.00 0.98
3994 5049 2.223688 GCGAGTGATCTCAGTGCTATGT 60.224 50.000 0.00 0.00 40.44 2.29
4032 5090 3.299503 ACATGTGAAAAAGGGCAGAGTT 58.700 40.909 0.00 0.00 0.00 3.01
4156 5215 2.140839 TAAACGTGGGTTGGTTGGTT 57.859 45.000 0.00 0.00 36.25 3.67
4166 5225 2.290197 GGTTGGTTGGTTGGTCGGTATA 60.290 50.000 0.00 0.00 0.00 1.47
4167 5226 3.613030 GTTGGTTGGTTGGTCGGTATAT 58.387 45.455 0.00 0.00 0.00 0.86
4168 5227 3.269538 TGGTTGGTTGGTCGGTATATG 57.730 47.619 0.00 0.00 0.00 1.78
4193 5252 1.463056 CGCCGTCAAACATTTCAGCTA 59.537 47.619 0.00 0.00 0.00 3.32
4198 5257 5.095490 CCGTCAAACATTTCAGCTATTTCC 58.905 41.667 0.00 0.00 0.00 3.13
4242 5305 4.929819 TGCTGCTAGTCGTGGAATAATA 57.070 40.909 0.00 0.00 0.00 0.98
4243 5306 4.871513 TGCTGCTAGTCGTGGAATAATAG 58.128 43.478 0.00 0.00 0.00 1.73
4244 5307 3.675698 GCTGCTAGTCGTGGAATAATAGC 59.324 47.826 0.00 0.00 36.91 2.97
4248 5311 3.819564 AGTCGTGGAATAATAGCAGCA 57.180 42.857 0.00 0.00 0.00 4.41
4253 5316 3.492383 CGTGGAATAATAGCAGCAGTCTG 59.508 47.826 0.00 0.00 43.16 3.51
4266 5329 2.420642 GCAGTCTGCTGAATGTTCTGA 58.579 47.619 17.89 0.00 45.28 3.27
4330 5393 6.550854 AGATGTTGAATTCCTTTCTGTGGAAA 59.449 34.615 2.27 0.00 45.38 3.13
4331 5394 6.729690 TGTTGAATTCCTTTCTGTGGAAAT 57.270 33.333 2.27 0.00 45.38 2.17
4386 5449 6.481643 ACCAGCCTACTTGCTTTTTAATCTA 58.518 36.000 0.00 0.00 40.32 1.98
4387 5450 6.599638 ACCAGCCTACTTGCTTTTTAATCTAG 59.400 38.462 0.00 0.00 40.32 2.43
4388 5451 6.599638 CCAGCCTACTTGCTTTTTAATCTAGT 59.400 38.462 0.00 0.00 40.32 2.57
4389 5452 7.414540 CCAGCCTACTTGCTTTTTAATCTAGTG 60.415 40.741 0.00 0.00 40.32 2.74
4391 5454 8.049721 AGCCTACTTGCTTTTTAATCTAGTGAT 58.950 33.333 0.00 0.00 38.85 3.06
4392 5455 9.326413 GCCTACTTGCTTTTTAATCTAGTGATA 57.674 33.333 0.00 0.00 31.70 2.15
4409 5494 6.869421 AGTGATAATGCATTAACGTTTTGC 57.131 33.333 22.37 22.09 36.91 3.68
4480 5575 7.655732 GTGGTGAAAATATTTGGTTTTGCTAGT 59.344 33.333 0.39 0.00 0.00 2.57
4484 5579 9.691362 TGAAAATATTTGGTTTTGCTAGTTCTC 57.309 29.630 0.39 0.00 0.00 2.87
4485 5580 8.742554 AAAATATTTGGTTTTGCTAGTTCTCG 57.257 30.769 0.39 0.00 0.00 4.04
4493 5588 3.784701 TTGCTAGTTCTCGACCTCATC 57.215 47.619 0.00 0.00 0.00 2.92
4509 5604 3.909258 ATCGTCACGTCCACGGTGC 62.909 63.158 14.81 0.00 44.95 5.01
4520 5615 4.373116 ACGGTGCAGGCTACACGG 62.373 66.667 20.20 20.20 42.26 4.94
4524 5619 2.603473 TGCAGGCTACACGGAGGT 60.603 61.111 0.00 0.00 0.00 3.85
4536 5631 2.332063 ACGGAGGTGATTAAGCCATG 57.668 50.000 0.00 0.00 0.00 3.66
4537 5632 1.134098 ACGGAGGTGATTAAGCCATGG 60.134 52.381 7.63 7.63 0.00 3.66
4539 5634 2.808202 CGGAGGTGATTAAGCCATGGAG 60.808 54.545 18.40 0.00 0.00 3.86
4540 5635 2.173569 GGAGGTGATTAAGCCATGGAGT 59.826 50.000 18.40 4.10 0.00 3.85
4541 5636 3.372025 GGAGGTGATTAAGCCATGGAGTT 60.372 47.826 18.40 10.58 0.00 3.01
4543 5648 2.952310 GGTGATTAAGCCATGGAGTTCC 59.048 50.000 18.40 0.00 0.00 3.62
4602 5709 3.369385 ACGTCTGAAACACTAGTGAACG 58.631 45.455 29.30 24.30 0.00 3.95
4636 5749 3.695830 ATGTTTCTTCTAGCGTTCCCA 57.304 42.857 0.00 0.00 0.00 4.37
4648 5761 4.553330 AGCGTTCCCATTCTTTCTCTTA 57.447 40.909 0.00 0.00 0.00 2.10
4665 5778 4.216902 TCTCTTATGTTTCCTGTTCGTCGA 59.783 41.667 0.00 0.00 0.00 4.20
4728 5846 1.890489 GTTTTTGCTACGGATTGGGGT 59.110 47.619 0.00 0.00 0.00 4.95
4738 5856 1.677552 GATTGGGGTGTGACGACCT 59.322 57.895 0.00 0.00 36.14 3.85
4872 5995 0.240411 ACGCTCTCTGTCGTGTTACC 59.760 55.000 0.00 0.00 37.55 2.85
4960 6087 4.101119 AGGTAGTAGTTTGATTGATCGGGG 59.899 45.833 0.00 0.00 0.00 5.73
5056 6296 3.736720 CATATCCAGTCCATGTCCACAG 58.263 50.000 0.00 0.00 0.00 3.66
5057 6297 1.661463 ATCCAGTCCATGTCCACAGT 58.339 50.000 0.00 0.00 0.00 3.55
5066 6306 4.649674 GTCCATGTCCACAGTAATCCTCTA 59.350 45.833 0.00 0.00 0.00 2.43
5067 6307 4.649674 TCCATGTCCACAGTAATCCTCTAC 59.350 45.833 0.00 0.00 0.00 2.59
5088 6328 0.671251 GAGGATGAATCGAGTCGCCT 59.329 55.000 22.00 22.00 0.00 5.52
5089 6329 0.387202 AGGATGAATCGAGTCGCCTG 59.613 55.000 21.43 0.00 0.00 4.85
5097 6337 2.343758 GAGTCGCCTGCTCCAACA 59.656 61.111 0.00 0.00 0.00 3.33
5098 6338 2.029844 GAGTCGCCTGCTCCAACAC 61.030 63.158 0.00 0.00 0.00 3.32
5100 6340 3.923864 TCGCCTGCTCCAACACGT 61.924 61.111 0.00 0.00 0.00 4.49
5105 6345 0.320374 CCTGCTCCAACACGTTCCTA 59.680 55.000 0.00 0.00 0.00 2.94
5120 6360 2.488153 GTTCCTACAACTCCAACATGCC 59.512 50.000 0.00 0.00 0.00 4.40
5126 6366 1.270550 CAACTCCAACATGCCACTTCC 59.729 52.381 0.00 0.00 0.00 3.46
5165 6409 3.382832 CTCCCCGGACGCAGAGTT 61.383 66.667 0.73 0.00 0.00 3.01
5166 6410 2.920912 TCCCCGGACGCAGAGTTT 60.921 61.111 0.73 0.00 0.00 2.66
5167 6411 2.434359 CCCCGGACGCAGAGTTTC 60.434 66.667 0.73 0.00 0.00 2.78
5168 6412 2.657237 CCCGGACGCAGAGTTTCT 59.343 61.111 0.73 0.00 0.00 2.52
5169 6413 1.738099 CCCGGACGCAGAGTTTCTG 60.738 63.158 0.73 1.75 46.90 3.02
5183 6427 6.728200 CAGAGTTTCTGCAACAGTAAAATCA 58.272 36.000 15.40 0.00 37.72 2.57
5184 6428 7.195646 CAGAGTTTCTGCAACAGTAAAATCAA 58.804 34.615 15.40 0.00 37.72 2.57
5185 6429 7.701924 CAGAGTTTCTGCAACAGTAAAATCAAA 59.298 33.333 15.40 0.00 37.72 2.69
5186 6430 8.250332 AGAGTTTCTGCAACAGTAAAATCAAAA 58.750 29.630 15.40 0.00 37.93 2.44
5187 6431 8.185003 AGTTTCTGCAACAGTAAAATCAAAAC 57.815 30.769 0.00 0.00 37.93 2.43
5188 6432 8.034804 AGTTTCTGCAACAGTAAAATCAAAACT 58.965 29.630 0.00 0.00 37.93 2.66
5189 6433 9.296400 GTTTCTGCAACAGTAAAATCAAAACTA 57.704 29.630 0.00 0.00 35.18 2.24
5190 6434 9.862371 TTTCTGCAACAGTAAAATCAAAACTAA 57.138 25.926 0.00 0.00 32.61 2.24
5191 6435 9.515020 TTCTGCAACAGTAAAATCAAAACTAAG 57.485 29.630 0.00 0.00 32.61 2.18
5192 6436 8.682710 TCTGCAACAGTAAAATCAAAACTAAGT 58.317 29.630 0.00 0.00 32.61 2.24
5193 6437 9.944663 CTGCAACAGTAAAATCAAAACTAAGTA 57.055 29.630 0.00 0.00 0.00 2.24
5252 6496 8.641155 AGAAACGTTTACAAAAGTTTTAAGTGC 58.359 29.630 14.65 6.35 45.76 4.40
5253 6497 8.523523 AAACGTTTACAAAAGTTTTAAGTGCT 57.476 26.923 12.83 0.00 44.26 4.40
5254 6498 8.523523 AACGTTTACAAAAGTTTTAAGTGCTT 57.476 26.923 0.00 0.00 37.31 3.91
5255 6499 7.944997 ACGTTTACAAAAGTTTTAAGTGCTTG 58.055 30.769 0.00 0.00 0.00 4.01
5256 6500 6.892430 CGTTTACAAAAGTTTTAAGTGCTTGC 59.108 34.615 0.00 0.00 0.00 4.01
5257 6501 7.410942 CGTTTACAAAAGTTTTAAGTGCTTGCA 60.411 33.333 0.00 0.00 0.00 4.08
5258 6502 7.891183 TTACAAAAGTTTTAAGTGCTTGCAA 57.109 28.000 0.00 0.00 0.00 4.08
5259 6503 6.793492 ACAAAAGTTTTAAGTGCTTGCAAA 57.207 29.167 0.00 0.00 0.00 3.68
5260 6504 7.195839 ACAAAAGTTTTAAGTGCTTGCAAAA 57.804 28.000 0.00 0.00 0.00 2.44
5261 6505 7.643579 ACAAAAGTTTTAAGTGCTTGCAAAAA 58.356 26.923 0.00 0.00 0.00 1.94
5262 6506 8.296000 ACAAAAGTTTTAAGTGCTTGCAAAAAT 58.704 25.926 0.00 0.00 0.00 1.82
5263 6507 9.127006 CAAAAGTTTTAAGTGCTTGCAAAAATT 57.873 25.926 0.00 0.00 31.70 1.82
5264 6508 8.894409 AAAGTTTTAAGTGCTTGCAAAAATTC 57.106 26.923 0.00 0.00 29.83 2.17
5265 6509 7.608308 AGTTTTAAGTGCTTGCAAAAATTCA 57.392 28.000 0.00 0.00 0.00 2.57
5266 6510 8.212317 AGTTTTAAGTGCTTGCAAAAATTCAT 57.788 26.923 0.00 0.00 0.00 2.57
5267 6511 8.337532 AGTTTTAAGTGCTTGCAAAAATTCATC 58.662 29.630 0.00 0.00 0.00 2.92
5268 6512 7.783090 TTTAAGTGCTTGCAAAAATTCATCA 57.217 28.000 0.00 0.00 0.00 3.07
5269 6513 7.966246 TTAAGTGCTTGCAAAAATTCATCAT 57.034 28.000 0.00 0.00 0.00 2.45
5270 6514 5.856126 AGTGCTTGCAAAAATTCATCATG 57.144 34.783 0.00 0.00 0.00 3.07
5271 6515 5.543714 AGTGCTTGCAAAAATTCATCATGA 58.456 33.333 0.00 0.00 0.00 3.07
5272 6516 5.992829 AGTGCTTGCAAAAATTCATCATGAA 59.007 32.000 1.59 1.59 41.09 2.57
5273 6517 6.483974 AGTGCTTGCAAAAATTCATCATGAAA 59.516 30.769 3.63 0.00 40.12 2.69
5274 6518 7.174253 AGTGCTTGCAAAAATTCATCATGAAAT 59.826 29.630 3.63 0.00 40.12 2.17
5275 6519 7.480542 GTGCTTGCAAAAATTCATCATGAAATC 59.519 33.333 3.63 0.00 40.12 2.17
5276 6520 7.173390 TGCTTGCAAAAATTCATCATGAAATCA 59.827 29.630 3.63 0.00 40.12 2.57
5277 6521 7.480542 GCTTGCAAAAATTCATCATGAAATCAC 59.519 33.333 3.63 0.00 40.12 3.06
5278 6522 7.964604 TGCAAAAATTCATCATGAAATCACA 57.035 28.000 3.63 0.00 40.12 3.58
5279 6523 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
5280 6524 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
5281 6525 9.834628 GCAAAAATTCATCATGAAATCACATTT 57.165 25.926 3.63 0.00 40.12 2.32
5289 6533 9.117183 TCATCATGAAATCACATTTCTAGAAGG 57.883 33.333 5.12 5.08 46.71 3.46
5290 6534 8.900781 CATCATGAAATCACATTTCTAGAAGGT 58.099 33.333 5.12 5.72 46.71 3.50
5291 6535 8.272545 TCATGAAATCACATTTCTAGAAGGTG 57.727 34.615 23.29 23.29 46.71 4.00
5292 6536 7.884877 TCATGAAATCACATTTCTAGAAGGTGT 59.115 33.333 25.87 21.26 46.71 4.16
5293 6537 7.439157 TGAAATCACATTTCTAGAAGGTGTG 57.561 36.000 29.16 29.16 46.71 3.82
5294 6538 6.430925 TGAAATCACATTTCTAGAAGGTGTGG 59.569 38.462 31.48 21.54 46.71 4.17
5295 6539 3.674997 TCACATTTCTAGAAGGTGTGGC 58.325 45.455 31.48 0.00 38.32 5.01
5296 6540 3.072330 TCACATTTCTAGAAGGTGTGGCA 59.928 43.478 31.48 20.88 38.32 4.92
5297 6541 3.820467 CACATTTCTAGAAGGTGTGGCAA 59.180 43.478 28.25 7.42 36.24 4.52
5298 6542 4.278170 CACATTTCTAGAAGGTGTGGCAAA 59.722 41.667 28.25 6.84 36.24 3.68
5299 6543 4.892934 ACATTTCTAGAAGGTGTGGCAAAA 59.107 37.500 19.05 0.00 0.00 2.44
5300 6544 5.362430 ACATTTCTAGAAGGTGTGGCAAAAA 59.638 36.000 19.05 0.00 0.00 1.94
5327 6571 8.620533 AAAAATCGCTAATCTGAAAATGCTAC 57.379 30.769 0.00 0.00 0.00 3.58
5328 6572 7.559590 AAATCGCTAATCTGAAAATGCTACT 57.440 32.000 0.00 0.00 0.00 2.57
5329 6573 7.559590 AATCGCTAATCTGAAAATGCTACTT 57.440 32.000 0.00 0.00 0.00 2.24
5330 6574 6.985188 TCGCTAATCTGAAAATGCTACTTT 57.015 33.333 0.00 0.00 0.00 2.66
5331 6575 7.005062 TCGCTAATCTGAAAATGCTACTTTC 57.995 36.000 0.00 0.00 34.09 2.62
5332 6576 6.593770 TCGCTAATCTGAAAATGCTACTTTCA 59.406 34.615 7.77 7.77 39.79 2.69
5333 6577 7.119116 TCGCTAATCTGAAAATGCTACTTTCAA 59.881 33.333 8.91 3.29 41.10 2.69
5334 6578 7.750458 CGCTAATCTGAAAATGCTACTTTCAAA 59.250 33.333 8.91 0.00 41.10 2.69
5335 6579 9.410556 GCTAATCTGAAAATGCTACTTTCAAAA 57.589 29.630 8.91 3.13 41.10 2.44
5337 6581 7.880059 ATCTGAAAATGCTACTTTCAAAAGC 57.120 32.000 2.43 0.00 41.10 3.51
5354 6598 4.612264 AAAGCATTTTGGAGCACTGAAT 57.388 36.364 0.00 0.00 31.62 2.57
5355 6599 4.612264 AAGCATTTTGGAGCACTGAATT 57.388 36.364 0.00 0.00 0.00 2.17
5356 6600 4.612264 AGCATTTTGGAGCACTGAATTT 57.388 36.364 0.00 0.00 0.00 1.82
5357 6601 4.312443 AGCATTTTGGAGCACTGAATTTG 58.688 39.130 0.00 0.00 0.00 2.32
5358 6602 4.060205 GCATTTTGGAGCACTGAATTTGT 58.940 39.130 0.00 0.00 0.00 2.83
5359 6603 4.512571 GCATTTTGGAGCACTGAATTTGTT 59.487 37.500 0.00 0.00 0.00 2.83
5360 6604 5.007921 GCATTTTGGAGCACTGAATTTGTTT 59.992 36.000 0.00 0.00 0.00 2.83
5361 6605 6.458615 GCATTTTGGAGCACTGAATTTGTTTT 60.459 34.615 0.00 0.00 0.00 2.43
5362 6606 7.474190 CATTTTGGAGCACTGAATTTGTTTTT 58.526 30.769 0.00 0.00 0.00 1.94
5380 6624 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
5381 6625 0.179015 TTTTGCCACGCCTTACAGGA 60.179 50.000 0.00 0.00 37.67 3.86
5382 6626 0.179015 TTTGCCACGCCTTACAGGAA 60.179 50.000 0.00 0.00 37.67 3.36
5383 6627 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.00 37.67 3.01
5384 6628 0.676466 TGCCACGCCTTACAGGAATG 60.676 55.000 0.00 0.00 37.67 2.67
5385 6629 0.676782 GCCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
5386 6630 1.086696 CCACGCCTTACAGGAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
5387 6631 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
5388 6632 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
5389 6633 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
5390 6634 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
5391 6635 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
5392 6636 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
5393 6637 4.437390 CGCCTTACAGGAATGTGATTTCAC 60.437 45.833 3.72 3.72 41.79 3.18
5394 6638 4.437390 GCCTTACAGGAATGTGATTTCACG 60.437 45.833 6.24 0.00 43.30 4.35
5395 6639 4.935205 CCTTACAGGAATGTGATTTCACGA 59.065 41.667 6.24 0.00 43.30 4.35
5396 6640 5.586243 CCTTACAGGAATGTGATTTCACGAT 59.414 40.000 6.24 0.00 43.30 3.73
5397 6641 6.457392 CCTTACAGGAATGTGATTTCACGATG 60.457 42.308 6.24 3.45 43.30 3.84
5398 6642 8.536815 CCTTACAGGAATGTGATTTCACGATGA 61.537 40.741 6.24 0.00 43.30 2.92
5407 6651 6.450845 GTGATTTCACGATGAATTTTTGCA 57.549 33.333 0.00 0.00 36.11 4.08
5408 6652 6.519315 GTGATTTCACGATGAATTTTTGCAG 58.481 36.000 0.00 0.00 36.11 4.41
5409 6653 5.634439 TGATTTCACGATGAATTTTTGCAGG 59.366 36.000 0.00 0.00 36.11 4.85
5410 6654 4.582701 TTCACGATGAATTTTTGCAGGT 57.417 36.364 0.00 0.00 30.26 4.00
5411 6655 5.697473 TTCACGATGAATTTTTGCAGGTA 57.303 34.783 0.00 0.00 30.26 3.08
5412 6656 5.041951 TCACGATGAATTTTTGCAGGTAC 57.958 39.130 0.00 0.00 0.00 3.34
5413 6657 4.759693 TCACGATGAATTTTTGCAGGTACT 59.240 37.500 0.00 0.00 43.88 2.73
5414 6658 5.240623 TCACGATGAATTTTTGCAGGTACTT 59.759 36.000 0.00 0.00 34.60 2.24
5415 6659 6.428465 TCACGATGAATTTTTGCAGGTACTTA 59.572 34.615 0.00 0.00 34.60 2.24
5416 6660 6.742718 CACGATGAATTTTTGCAGGTACTTAG 59.257 38.462 0.00 0.00 34.60 2.18
5417 6661 6.653320 ACGATGAATTTTTGCAGGTACTTAGA 59.347 34.615 0.00 0.00 34.60 2.10
5418 6662 7.174253 ACGATGAATTTTTGCAGGTACTTAGAA 59.826 33.333 0.00 0.00 34.60 2.10
5419 6663 7.481798 CGATGAATTTTTGCAGGTACTTAGAAC 59.518 37.037 0.00 0.00 34.60 3.01
5420 6664 7.817418 TGAATTTTTGCAGGTACTTAGAACT 57.183 32.000 0.00 0.00 34.60 3.01
5421 6665 8.232913 TGAATTTTTGCAGGTACTTAGAACTT 57.767 30.769 0.00 0.00 34.60 2.66
5422 6666 8.691797 TGAATTTTTGCAGGTACTTAGAACTTT 58.308 29.630 0.00 0.00 34.60 2.66
5423 6667 9.529325 GAATTTTTGCAGGTACTTAGAACTTTT 57.471 29.630 0.00 0.00 34.60 2.27
5424 6668 8.871686 ATTTTTGCAGGTACTTAGAACTTTTG 57.128 30.769 0.00 0.00 34.60 2.44
5425 6669 7.399245 TTTTGCAGGTACTTAGAACTTTTGT 57.601 32.000 0.00 0.00 34.60 2.83
5426 6670 6.613755 TTGCAGGTACTTAGAACTTTTGTC 57.386 37.500 0.00 0.00 34.60 3.18
5427 6671 5.676552 TGCAGGTACTTAGAACTTTTGTCA 58.323 37.500 0.00 0.00 34.60 3.58
5428 6672 6.116806 TGCAGGTACTTAGAACTTTTGTCAA 58.883 36.000 0.00 0.00 34.60 3.18
5429 6673 6.770785 TGCAGGTACTTAGAACTTTTGTCAAT 59.229 34.615 0.00 0.00 34.60 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.301165 ACGGTCAAACGTACCAGCC 60.301 57.895 6.78 0.00 46.58 4.85
151 152 2.711311 CATGCACGCCGAATCCTG 59.289 61.111 0.00 0.00 0.00 3.86
198 199 2.613506 GGGGTCACCAAAACGCTCG 61.614 63.158 0.00 0.00 39.85 5.03
265 778 2.183409 GACCAGTAGGCGGTCGTAA 58.817 57.895 0.00 0.00 43.36 3.18
266 779 3.909662 GACCAGTAGGCGGTCGTA 58.090 61.111 0.00 0.00 43.36 3.43
270 783 0.690762 ACATTTGACCAGTAGGCGGT 59.309 50.000 0.00 0.00 40.30 5.68
275 788 3.053831 ACCGGAACATTTGACCAGTAG 57.946 47.619 9.46 0.00 0.00 2.57
277 790 2.358322 AACCGGAACATTTGACCAGT 57.642 45.000 9.46 0.00 0.00 4.00
306 819 0.107214 CCCAGCCAAGAAATAGCCGA 60.107 55.000 0.00 0.00 0.00 5.54
311 824 2.896685 CACCAAACCCAGCCAAGAAATA 59.103 45.455 0.00 0.00 0.00 1.40
312 825 1.693606 CACCAAACCCAGCCAAGAAAT 59.306 47.619 0.00 0.00 0.00 2.17
313 826 1.118838 CACCAAACCCAGCCAAGAAA 58.881 50.000 0.00 0.00 0.00 2.52
467 980 4.202030 GCCCACAGCAACTACTACTACTAG 60.202 50.000 0.00 0.00 42.97 2.57
469 982 2.496470 GCCCACAGCAACTACTACTACT 59.504 50.000 0.00 0.00 42.97 2.57
566 1079 2.045438 TTCGGCGCATTGGTCCAT 60.045 55.556 10.83 0.00 0.00 3.41
615 1131 1.735376 CTGATCTACCCCCGGACACG 61.735 65.000 0.73 0.00 40.55 4.49
692 1208 9.273016 TGAAACAACTAAATTCCTCTACTGAAG 57.727 33.333 0.00 0.00 0.00 3.02
743 1259 5.694910 CCGATTAAGTACAACGCCTATGAAT 59.305 40.000 0.00 0.00 0.00 2.57
762 1278 4.536765 ACCCAGCTATGATTTTTCCGATT 58.463 39.130 0.00 0.00 0.00 3.34
789 1306 2.049156 CAAGGTCTCGCACGAGCA 60.049 61.111 15.04 2.02 41.71 4.26
801 1318 1.686587 GCTACAAAAAGGCACCAAGGT 59.313 47.619 0.00 0.00 0.00 3.50
837 1354 4.556135 CGCATCTGTGTTGCTTAAAGATTG 59.444 41.667 0.00 0.00 37.96 2.67
912 1431 1.200020 GTAACTGGTCCTGCATTGCAC 59.800 52.381 7.38 0.00 33.79 4.57
990 1512 0.178981 AGCCCATCATATGCACACCC 60.179 55.000 0.00 0.00 0.00 4.61
1017 1539 1.078848 CTTCTTGGACCTCAGGCCG 60.079 63.158 0.00 0.00 0.00 6.13
1068 1590 3.499737 GTGTCCCTTGCATCGCCG 61.500 66.667 0.00 0.00 0.00 6.46
1131 1653 0.036732 TGAAACTTGGAGGCGCTGAT 59.963 50.000 7.64 0.00 0.00 2.90
1143 1665 2.452600 TTGCCCTGTTCCTGAAACTT 57.547 45.000 0.00 0.00 38.76 2.66
1221 1743 1.623311 TCAACCAGAATCAGGCTCGAA 59.377 47.619 0.00 0.00 0.00 3.71
1224 1746 3.204526 CTGATCAACCAGAATCAGGCTC 58.795 50.000 0.00 0.00 37.47 4.70
1284 1806 1.573108 CTCCTCCCTTGCACCTAGAA 58.427 55.000 0.00 0.00 0.00 2.10
1291 1813 2.439507 CCTTAATAGCTCCTCCCTTGCA 59.560 50.000 0.00 0.00 0.00 4.08
1314 1836 4.380867 GGCAGTGGATTTGAAAATCGATGT 60.381 41.667 0.00 0.00 44.43 3.06
1410 1932 1.143073 GGACCTGAAACCTCAAGTGGT 59.857 52.381 0.00 0.00 43.11 4.16
1446 1968 3.846588 TCTTAAGCCCATCAGACCTCTTT 59.153 43.478 0.00 0.00 0.00 2.52
1491 2013 1.953686 GAAAACCACTGGCAAGCAGTA 59.046 47.619 0.00 0.00 0.00 2.74
1520 2042 1.202486 TCTGAGTTTCGGACACACACC 60.202 52.381 0.00 0.00 0.00 4.16
1530 2052 5.852738 ATGATGTCAAAGTCTGAGTTTCG 57.147 39.130 7.49 4.73 33.60 3.46
1647 2169 8.721133 AAGGGAAAGTATTACCATGAAACTTT 57.279 30.769 0.00 2.65 42.67 2.66
1685 2215 2.353323 GGAAACCTCCATGACCGTAAC 58.647 52.381 0.00 0.00 41.96 2.50
1686 2216 2.773993 GGAAACCTCCATGACCGTAA 57.226 50.000 0.00 0.00 41.96 3.18
1700 2230 3.883489 ACTAGCAAAACTGTGAGGGAAAC 59.117 43.478 0.00 0.00 0.00 2.78
1734 2264 1.102978 GTGCCAGAAAGTGTGTTGGT 58.897 50.000 0.00 0.00 33.21 3.67
2136 2681 8.122472 AGAAAGTAAATCCCCACTAAATTGTG 57.878 34.615 0.00 0.00 37.66 3.33
2137 2682 7.396339 GGAGAAAGTAAATCCCCACTAAATTGT 59.604 37.037 0.00 0.00 0.00 2.71
2139 2684 7.475299 TGGAGAAAGTAAATCCCCACTAAATT 58.525 34.615 0.00 0.00 31.73 1.82
2149 2694 7.496263 GTCATCTACCTTGGAGAAAGTAAATCC 59.504 40.741 0.00 0.00 33.66 3.01
2319 3290 2.124736 CCATGGCACGTAGGTGGG 60.125 66.667 16.75 6.01 44.54 4.61
2689 3660 3.578282 GGTCATGTCAAAGGGTTTGGATT 59.422 43.478 0.00 0.00 40.98 3.01
2722 3693 7.870445 TGCAAGAGAACATGGTAAATTTAAACC 59.130 33.333 0.00 1.13 36.24 3.27
2723 3694 8.699749 GTGCAAGAGAACATGGTAAATTTAAAC 58.300 33.333 0.00 0.00 0.00 2.01
2724 3695 8.637986 AGTGCAAGAGAACATGGTAAATTTAAA 58.362 29.630 0.00 0.00 0.00 1.52
2725 3696 8.177119 AGTGCAAGAGAACATGGTAAATTTAA 57.823 30.769 0.00 0.00 0.00 1.52
2726 3697 7.759489 AGTGCAAGAGAACATGGTAAATTTA 57.241 32.000 0.00 0.00 0.00 1.40
2727 3698 6.655078 AGTGCAAGAGAACATGGTAAATTT 57.345 33.333 0.00 0.00 0.00 1.82
2728 3699 6.655078 AAGTGCAAGAGAACATGGTAAATT 57.345 33.333 0.00 0.00 0.00 1.82
2729 3700 6.040842 ACAAAGTGCAAGAGAACATGGTAAAT 59.959 34.615 0.00 0.00 0.00 1.40
2730 3701 5.359576 ACAAAGTGCAAGAGAACATGGTAAA 59.640 36.000 0.00 0.00 0.00 2.01
2731 3702 4.887071 ACAAAGTGCAAGAGAACATGGTAA 59.113 37.500 0.00 0.00 0.00 2.85
2732 3703 4.460263 ACAAAGTGCAAGAGAACATGGTA 58.540 39.130 0.00 0.00 0.00 3.25
2772 3756 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2773 3757 1.558294 GTATTTGGGAACGGAGGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
2774 3758 1.838077 AGTATTTGGGAACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
2775 3759 1.961133 AGTATTTGGGAACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
2776 3760 2.290705 ACAAGTATTTGGGAACGGAGGG 60.291 50.000 2.81 0.00 38.66 4.30
2777 3761 3.007635 GACAAGTATTTGGGAACGGAGG 58.992 50.000 2.81 0.00 38.66 4.30
2778 3762 3.939066 AGACAAGTATTTGGGAACGGAG 58.061 45.455 2.81 0.00 38.66 4.63
2779 3763 4.360951 AAGACAAGTATTTGGGAACGGA 57.639 40.909 2.81 0.00 38.66 4.69
2780 3764 4.760204 AGAAAGACAAGTATTTGGGAACGG 59.240 41.667 2.81 0.00 38.66 4.44
2781 3765 5.941948 AGAAAGACAAGTATTTGGGAACG 57.058 39.130 2.81 0.00 38.66 3.95
2782 3766 6.127980 GCCTAGAAAGACAAGTATTTGGGAAC 60.128 42.308 2.81 0.00 38.66 3.62
2783 3767 5.944007 GCCTAGAAAGACAAGTATTTGGGAA 59.056 40.000 2.81 0.00 38.66 3.97
2784 3768 5.013704 TGCCTAGAAAGACAAGTATTTGGGA 59.986 40.000 2.81 0.00 38.66 4.37
2785 3769 5.253330 TGCCTAGAAAGACAAGTATTTGGG 58.747 41.667 2.81 0.00 38.66 4.12
2786 3770 7.396540 AATGCCTAGAAAGACAAGTATTTGG 57.603 36.000 2.81 0.00 38.66 3.28
2787 3771 8.514594 TGAAATGCCTAGAAAGACAAGTATTTG 58.485 33.333 0.00 0.00 40.24 2.32
2788 3772 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2789 3773 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
2790 3774 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
2791 3775 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
2792 3776 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
2793 3777 6.810182 CCATTTGAAATGCCTAGAAAGACAAG 59.190 38.462 12.26 0.00 0.00 3.16
2794 3778 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
2795 3779 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
2796 3780 6.151817 AGTCCATTTGAAATGCCTAGAAAGAC 59.848 38.462 12.26 10.86 0.00 3.01
2797 3781 6.248433 AGTCCATTTGAAATGCCTAGAAAGA 58.752 36.000 12.26 0.00 0.00 2.52
2798 3782 6.151648 TGAGTCCATTTGAAATGCCTAGAAAG 59.848 38.462 12.26 0.00 0.00 2.62
2799 3783 6.009589 TGAGTCCATTTGAAATGCCTAGAAA 58.990 36.000 12.26 0.00 0.00 2.52
2800 3784 5.569355 TGAGTCCATTTGAAATGCCTAGAA 58.431 37.500 12.26 0.00 0.00 2.10
2801 3785 5.178096 TGAGTCCATTTGAAATGCCTAGA 57.822 39.130 12.26 1.83 0.00 2.43
2802 3786 5.183713 TGTTGAGTCCATTTGAAATGCCTAG 59.816 40.000 12.26 0.00 0.00 3.02
2803 3787 5.076182 TGTTGAGTCCATTTGAAATGCCTA 58.924 37.500 12.26 0.00 0.00 3.93
2804 3788 3.896888 TGTTGAGTCCATTTGAAATGCCT 59.103 39.130 12.26 9.70 0.00 4.75
2805 3789 4.255833 TGTTGAGTCCATTTGAAATGCC 57.744 40.909 12.26 5.23 0.00 4.40
2806 3790 5.512788 CGTATGTTGAGTCCATTTGAAATGC 59.487 40.000 12.26 0.23 0.00 3.56
2807 3791 6.029607 CCGTATGTTGAGTCCATTTGAAATG 58.970 40.000 10.84 10.84 0.00 2.32
2808 3792 5.943416 TCCGTATGTTGAGTCCATTTGAAAT 59.057 36.000 0.00 0.00 0.00 2.17
2809 3793 5.309638 TCCGTATGTTGAGTCCATTTGAAA 58.690 37.500 0.00 0.00 0.00 2.69
2810 3794 4.900684 TCCGTATGTTGAGTCCATTTGAA 58.099 39.130 0.00 0.00 0.00 2.69
2811 3795 4.545208 TCCGTATGTTGAGTCCATTTGA 57.455 40.909 0.00 0.00 0.00 2.69
2812 3796 4.635765 ACATCCGTATGTTGAGTCCATTTG 59.364 41.667 0.00 0.00 44.07 2.32
2813 3797 4.843728 ACATCCGTATGTTGAGTCCATTT 58.156 39.130 0.00 0.00 44.07 2.32
2814 3798 4.487714 ACATCCGTATGTTGAGTCCATT 57.512 40.909 0.00 0.00 44.07 3.16
2815 3799 5.541845 CATACATCCGTATGTTGAGTCCAT 58.458 41.667 0.00 0.00 46.70 3.41
2816 3800 4.944048 CATACATCCGTATGTTGAGTCCA 58.056 43.478 0.00 0.00 46.70 4.02
2854 3838 4.091424 GCGCAAAATGAGTGAATCTACAC 58.909 43.478 0.30 0.00 40.60 2.90
2855 3839 4.002982 AGCGCAAAATGAGTGAATCTACA 58.997 39.130 11.47 0.00 0.00 2.74
2856 3840 4.142816 ACAGCGCAAAATGAGTGAATCTAC 60.143 41.667 11.47 0.00 0.00 2.59
2857 3841 4.002982 ACAGCGCAAAATGAGTGAATCTA 58.997 39.130 11.47 0.00 0.00 1.98
2858 3842 2.816087 ACAGCGCAAAATGAGTGAATCT 59.184 40.909 11.47 0.00 0.00 2.40
2859 3843 3.207474 ACAGCGCAAAATGAGTGAATC 57.793 42.857 11.47 0.00 0.00 2.52
2860 3844 4.156556 ACATACAGCGCAAAATGAGTGAAT 59.843 37.500 11.47 0.00 0.00 2.57
2861 3845 3.501828 ACATACAGCGCAAAATGAGTGAA 59.498 39.130 11.47 0.00 0.00 3.18
2862 3846 3.073678 ACATACAGCGCAAAATGAGTGA 58.926 40.909 11.47 0.00 0.00 3.41
2863 3847 3.476295 ACATACAGCGCAAAATGAGTG 57.524 42.857 11.47 6.23 0.00 3.51
2864 3848 4.253685 ACTACATACAGCGCAAAATGAGT 58.746 39.130 11.47 11.43 0.00 3.41
2865 3849 4.329801 TGACTACATACAGCGCAAAATGAG 59.670 41.667 11.47 10.87 0.00 2.90
2866 3850 4.092821 GTGACTACATACAGCGCAAAATGA 59.907 41.667 11.47 0.00 0.00 2.57
2867 3851 4.093408 AGTGACTACATACAGCGCAAAATG 59.907 41.667 11.47 12.16 0.00 2.32
2868 3852 4.253685 AGTGACTACATACAGCGCAAAAT 58.746 39.130 11.47 0.00 0.00 1.82
2869 3853 3.659786 AGTGACTACATACAGCGCAAAA 58.340 40.909 11.47 0.00 0.00 2.44
2870 3854 3.313012 AGTGACTACATACAGCGCAAA 57.687 42.857 11.47 0.00 0.00 3.68
2871 3855 2.993220 CAAGTGACTACATACAGCGCAA 59.007 45.455 11.47 0.00 0.00 4.85
2872 3856 2.029380 ACAAGTGACTACATACAGCGCA 60.029 45.455 11.47 0.00 0.00 6.09
2873 3857 2.607187 ACAAGTGACTACATACAGCGC 58.393 47.619 0.00 0.00 0.00 5.92
2874 3858 4.234574 TCAACAAGTGACTACATACAGCG 58.765 43.478 0.00 0.00 0.00 5.18
2875 3859 6.539649 TTTCAACAAGTGACTACATACAGC 57.460 37.500 0.00 0.00 35.39 4.40
2876 3860 8.539770 AGATTTCAACAAGTGACTACATACAG 57.460 34.615 0.00 0.00 35.39 2.74
2877 3861 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
2878 3862 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2880 3864 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2881 3865 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2882 3866 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2883 3867 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2884 3868 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2885 3869 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2886 3870 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2887 3871 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2888 3872 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2889 3873 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
2890 3874 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
2900 3884 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
2901 3885 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
2902 3886 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2903 3887 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2904 3888 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2905 3889 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2906 3890 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2907 3891 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2908 3892 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2909 3893 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2910 3894 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2911 3895 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2912 3896 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2913 3897 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2914 3898 7.715266 ATATACTCCCTCCGTTCCTAAATAC 57.285 40.000 0.00 0.00 0.00 1.89
2915 3899 8.731591 AAATATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
2916 3900 7.628501 AAATATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
2917 3901 7.441903 AAAATATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
2918 3902 8.424133 GTTAAAATATACTCCCTCCGTTCCTAA 58.576 37.037 0.00 0.00 0.00 2.69
2919 3903 7.564660 TGTTAAAATATACTCCCTCCGTTCCTA 59.435 37.037 0.00 0.00 0.00 2.94
2920 3904 6.384886 TGTTAAAATATACTCCCTCCGTTCCT 59.615 38.462 0.00 0.00 0.00 3.36
2921 3905 6.585416 TGTTAAAATATACTCCCTCCGTTCC 58.415 40.000 0.00 0.00 0.00 3.62
2922 3906 7.307811 GCATGTTAAAATATACTCCCTCCGTTC 60.308 40.741 0.00 0.00 0.00 3.95
2923 3907 6.485648 GCATGTTAAAATATACTCCCTCCGTT 59.514 38.462 0.00 0.00 0.00 4.44
2924 3908 5.995897 GCATGTTAAAATATACTCCCTCCGT 59.004 40.000 0.00 0.00 0.00 4.69
2925 3909 5.995282 TGCATGTTAAAATATACTCCCTCCG 59.005 40.000 0.00 0.00 0.00 4.63
2926 3910 8.409358 AATGCATGTTAAAATATACTCCCTCC 57.591 34.615 0.00 0.00 0.00 4.30
2927 3911 9.899226 GAAATGCATGTTAAAATATACTCCCTC 57.101 33.333 0.00 0.00 0.00 4.30
2928 3912 9.646522 AGAAATGCATGTTAAAATATACTCCCT 57.353 29.630 0.00 0.00 0.00 4.20
2965 3949 6.577103 TGAGGTTGAGAAGTCATCATACATC 58.423 40.000 0.00 0.00 30.85 3.06
3088 4072 9.377312 CCTACAGTTTTCAAATTTCAAAAGGAA 57.623 29.630 0.00 0.00 0.00 3.36
3089 4073 8.536175 ACCTACAGTTTTCAAATTTCAAAAGGA 58.464 29.630 8.64 0.00 0.00 3.36
3090 4074 8.716646 ACCTACAGTTTTCAAATTTCAAAAGG 57.283 30.769 0.00 0.94 0.00 3.11
3091 4075 9.364989 TGACCTACAGTTTTCAAATTTCAAAAG 57.635 29.630 0.00 0.00 0.00 2.27
3092 4076 9.883142 ATGACCTACAGTTTTCAAATTTCAAAA 57.117 25.926 0.00 0.00 0.00 2.44
3098 4082 9.975218 ACCTATATGACCTACAGTTTTCAAATT 57.025 29.630 0.00 0.00 0.00 1.82
3099 4083 9.614792 GACCTATATGACCTACAGTTTTCAAAT 57.385 33.333 0.00 0.00 0.00 2.32
3100 4084 8.598916 TGACCTATATGACCTACAGTTTTCAAA 58.401 33.333 0.00 0.00 0.00 2.69
3101 4085 8.141298 TGACCTATATGACCTACAGTTTTCAA 57.859 34.615 0.00 0.00 0.00 2.69
3102 4086 7.727578 TGACCTATATGACCTACAGTTTTCA 57.272 36.000 0.00 0.00 0.00 2.69
3103 4087 9.915629 CTATGACCTATATGACCTACAGTTTTC 57.084 37.037 0.00 0.00 0.00 2.29
3104 4088 8.871125 CCTATGACCTATATGACCTACAGTTTT 58.129 37.037 0.00 0.00 0.00 2.43
3105 4089 8.011290 ACCTATGACCTATATGACCTACAGTTT 58.989 37.037 0.00 0.00 0.00 2.66
3106 4090 7.536625 ACCTATGACCTATATGACCTACAGTT 58.463 38.462 0.00 0.00 0.00 3.16
3107 4091 7.104974 ACCTATGACCTATATGACCTACAGT 57.895 40.000 0.00 0.00 0.00 3.55
3108 4092 7.670140 TGAACCTATGACCTATATGACCTACAG 59.330 40.741 0.00 0.00 0.00 2.74
3109 4093 7.450634 GTGAACCTATGACCTATATGACCTACA 59.549 40.741 0.00 0.00 0.00 2.74
3110 4094 7.450634 TGTGAACCTATGACCTATATGACCTAC 59.549 40.741 0.00 0.00 0.00 3.18
3111 4095 7.450634 GTGTGAACCTATGACCTATATGACCTA 59.549 40.741 0.00 0.00 0.00 3.08
3112 4096 6.267928 GTGTGAACCTATGACCTATATGACCT 59.732 42.308 0.00 0.00 0.00 3.85
3113 4097 6.041637 TGTGTGAACCTATGACCTATATGACC 59.958 42.308 0.00 0.00 0.00 4.02
3114 4098 7.050970 TGTGTGAACCTATGACCTATATGAC 57.949 40.000 0.00 0.00 0.00 3.06
3115 4099 6.239317 GCTGTGTGAACCTATGACCTATATGA 60.239 42.308 0.00 0.00 0.00 2.15
3116 4100 5.928839 GCTGTGTGAACCTATGACCTATATG 59.071 44.000 0.00 0.00 0.00 1.78
3117 4101 5.602561 TGCTGTGTGAACCTATGACCTATAT 59.397 40.000 0.00 0.00 0.00 0.86
3118 4102 4.959839 TGCTGTGTGAACCTATGACCTATA 59.040 41.667 0.00 0.00 0.00 1.31
3119 4103 3.774766 TGCTGTGTGAACCTATGACCTAT 59.225 43.478 0.00 0.00 0.00 2.57
3120 4104 3.169908 TGCTGTGTGAACCTATGACCTA 58.830 45.455 0.00 0.00 0.00 3.08
3121 4105 1.977854 TGCTGTGTGAACCTATGACCT 59.022 47.619 0.00 0.00 0.00 3.85
3122 4106 2.472695 TGCTGTGTGAACCTATGACC 57.527 50.000 0.00 0.00 0.00 4.02
3123 4107 3.338249 ACATGCTGTGTGAACCTATGAC 58.662 45.455 0.00 0.00 40.28 3.06
3124 4108 3.701205 ACATGCTGTGTGAACCTATGA 57.299 42.857 0.00 0.00 40.28 2.15
3125 4109 3.127548 GGAACATGCTGTGTGAACCTATG 59.872 47.826 0.00 0.00 41.14 2.23
3126 4110 3.009473 AGGAACATGCTGTGTGAACCTAT 59.991 43.478 0.00 0.00 41.14 2.57
3127 4111 2.371841 AGGAACATGCTGTGTGAACCTA 59.628 45.455 0.00 0.00 41.14 3.08
3149 4204 3.568007 GCCAGAACCAATGTAAACTGTGA 59.432 43.478 0.00 0.00 0.00 3.58
3359 4414 4.424626 CTGTTATTAGCTCGAGCAAGACA 58.575 43.478 36.87 28.14 45.16 3.41
3527 4582 2.408271 TCAGAATGATGTCTGCCACC 57.592 50.000 0.00 0.00 42.56 4.61
3588 4643 0.743701 GCTAGAGACTCCACGACGGA 60.744 60.000 0.00 0.00 43.61 4.69
3689 4744 3.610040 ACAATGCCATTGAGACTCGTA 57.390 42.857 23.56 0.00 42.83 3.43
3701 4756 2.170166 GGATGTTGAGGAACAATGCCA 58.830 47.619 0.00 0.00 45.23 4.92
3725 4780 1.586564 CGACGGCGAGAAGGTCATC 60.587 63.158 16.62 0.00 40.82 2.92
3853 4908 2.892852 CCAGAAGGCAATTTCTTGACCA 59.107 45.455 0.00 0.00 41.74 4.02
3865 4920 1.153647 CGCGTGATACCAGAAGGCA 60.154 57.895 0.00 0.00 39.06 4.75
3869 4924 0.454600 GTCTCCGCGTGATACCAGAA 59.545 55.000 4.92 0.00 0.00 3.02
3870 4925 1.381928 GGTCTCCGCGTGATACCAGA 61.382 60.000 19.87 3.04 39.46 3.86
3872 4927 1.379443 AGGTCTCCGCGTGATACCA 60.379 57.895 23.84 0.61 41.55 3.25
3873 4928 1.065928 CAGGTCTCCGCGTGATACC 59.934 63.158 18.20 18.20 39.86 2.73
3874 4929 1.065928 CCAGGTCTCCGCGTGATAC 59.934 63.158 4.92 5.02 0.00 2.24
3875 4930 1.379443 ACCAGGTCTCCGCGTGATA 60.379 57.895 4.92 0.00 0.00 2.15
3880 4935 4.778415 CGACACCAGGTCTCCGCG 62.778 72.222 0.00 0.00 44.68 6.46
3893 4948 2.882137 GGACAATCAAAAACCCTCGACA 59.118 45.455 0.00 0.00 0.00 4.35
3920 4975 4.156739 GGCAAAGAGAAGAAAATCCGACAT 59.843 41.667 0.00 0.00 0.00 3.06
3994 5049 6.355747 TCACATGTCCTTGCAACATATATCA 58.644 36.000 0.00 0.00 35.62 2.15
4032 5090 7.614583 ACAAGCTGGTTCTACTATCTACACTTA 59.385 37.037 0.00 0.00 0.00 2.24
4156 5215 0.031585 GCGAGCACATATACCGACCA 59.968 55.000 0.00 0.00 0.00 4.02
4166 5225 0.955428 ATGTTTGACGGCGAGCACAT 60.955 50.000 16.62 13.00 0.00 3.21
4167 5226 1.163420 AATGTTTGACGGCGAGCACA 61.163 50.000 16.62 11.12 0.00 4.57
4168 5227 0.040425 AAATGTTTGACGGCGAGCAC 60.040 50.000 16.62 5.06 0.00 4.40
4193 5252 8.302438 CAAAACTTAGCATTCAAGAGAGGAAAT 58.698 33.333 0.00 0.00 0.00 2.17
4198 5257 6.361748 GCAACAAAACTTAGCATTCAAGAGAG 59.638 38.462 0.00 0.00 0.00 3.20
4248 5311 4.252073 GACATCAGAACATTCAGCAGACT 58.748 43.478 0.00 0.00 0.00 3.24
4253 5316 3.076621 TGTGGACATCAGAACATTCAGC 58.923 45.455 0.00 0.00 0.00 4.26
4266 5329 4.769688 ACATGATATCAACGTGTGGACAT 58.230 39.130 9.99 0.00 36.35 3.06
4330 5393 5.540911 ACAATTGCAACGGAGAAATCAAAT 58.459 33.333 0.00 0.00 0.00 2.32
4331 5394 4.942852 ACAATTGCAACGGAGAAATCAAA 58.057 34.783 0.00 0.00 0.00 2.69
4386 5449 6.385843 TGCAAAACGTTAATGCATTATCACT 58.614 32.000 27.90 6.31 44.52 3.41
4387 5450 6.624710 TGCAAAACGTTAATGCATTATCAC 57.375 33.333 27.90 14.29 44.52 3.06
4396 5481 5.343058 CAGTCCAATCTGCAAAACGTTAATG 59.657 40.000 0.00 5.37 0.00 1.90
4397 5482 5.460646 CAGTCCAATCTGCAAAACGTTAAT 58.539 37.500 0.00 0.00 0.00 1.40
4401 5486 1.608590 CCAGTCCAATCTGCAAAACGT 59.391 47.619 0.00 0.00 34.47 3.99
4409 5494 2.768253 TACTGTGCCAGTCCAATCTG 57.232 50.000 10.60 0.00 41.21 2.90
4452 5547 7.053498 AGCAAAACCAAATATTTTCACCACTT 58.947 30.769 0.00 0.00 0.00 3.16
4485 5580 0.456312 GTGGACGTGACGATGAGGTC 60.456 60.000 13.70 0.00 37.45 3.85
4493 5588 4.934942 TGCACCGTGGACGTGACG 62.935 66.667 2.24 2.24 37.74 4.35
4509 5604 0.537188 AATCACCTCCGTGTAGCCTG 59.463 55.000 0.00 0.00 41.09 4.85
4520 5615 3.567478 ACTCCATGGCTTAATCACCTC 57.433 47.619 6.96 0.00 0.00 3.85
4524 5619 4.591321 AAGGAACTCCATGGCTTAATCA 57.409 40.909 6.96 0.00 38.49 2.57
4526 5621 5.583932 AGAAAAGGAACTCCATGGCTTAAT 58.416 37.500 6.96 0.00 38.49 1.40
4527 5622 4.998051 AGAAAAGGAACTCCATGGCTTAA 58.002 39.130 6.96 0.00 38.49 1.85
4529 5624 3.532641 AGAAAAGGAACTCCATGGCTT 57.467 42.857 6.96 0.74 38.49 4.35
4535 5630 7.660030 AAAAAGATGAAGAAAAGGAACTCCA 57.340 32.000 0.00 0.00 38.49 3.86
4602 5709 6.739112 AGAAGAAACATAGCTGAACAAAACC 58.261 36.000 0.00 0.00 0.00 3.27
4636 5749 7.661847 ACGAACAGGAAACATAAGAGAAAGAAT 59.338 33.333 0.00 0.00 0.00 2.40
4648 5761 2.259618 CGATCGACGAACAGGAAACAT 58.740 47.619 10.26 0.00 45.77 2.71
4674 5787 2.855209 ATATCATCCACCAGCTCAGC 57.145 50.000 0.00 0.00 0.00 4.26
4728 5846 3.614150 GCAATCTACTTCAGGTCGTCACA 60.614 47.826 0.00 0.00 0.00 3.58
4738 5856 3.860641 TGCTCAATCGCAATCTACTTCA 58.139 40.909 0.00 0.00 36.89 3.02
4872 5995 0.729140 CTTTACAGCCCGCGCAAAAG 60.729 55.000 8.75 1.47 37.52 2.27
4960 6087 1.080434 GTCACGCCTGGTCTGTCTC 60.080 63.158 0.00 0.00 0.00 3.36
5026 6265 5.072193 ACATGGACTGGATATGCTGTAATGA 59.928 40.000 23.43 6.48 0.00 2.57
5039 6279 2.319025 TACTGTGGACATGGACTGGA 57.681 50.000 0.00 0.00 0.00 3.86
5040 6280 3.535561 GATTACTGTGGACATGGACTGG 58.464 50.000 0.00 0.00 0.00 4.00
5066 6306 1.066303 GCGACTCGATTCATCCTCTGT 59.934 52.381 1.63 0.00 0.00 3.41
5067 6307 1.601663 GGCGACTCGATTCATCCTCTG 60.602 57.143 1.63 0.00 0.00 3.35
5088 6328 0.753867 TGTAGGAACGTGTTGGAGCA 59.246 50.000 0.00 0.00 0.00 4.26
5089 6329 1.529865 GTTGTAGGAACGTGTTGGAGC 59.470 52.381 0.00 0.00 0.00 4.70
5097 6337 3.399330 CATGTTGGAGTTGTAGGAACGT 58.601 45.455 0.00 0.00 0.00 3.99
5098 6338 2.159627 GCATGTTGGAGTTGTAGGAACG 59.840 50.000 0.00 0.00 0.00 3.95
5100 6340 2.107378 TGGCATGTTGGAGTTGTAGGAA 59.893 45.455 0.00 0.00 0.00 3.36
5105 6345 1.956477 GAAGTGGCATGTTGGAGTTGT 59.044 47.619 0.00 0.00 0.00 3.32
5133 6377 1.524849 GGAGCTCCCCTTTGATCGC 60.525 63.158 23.19 0.00 0.00 4.58
5159 6403 6.728200 TGATTTTACTGTTGCAGAAACTCTG 58.272 36.000 2.91 0.00 46.90 3.35
5160 6404 6.942532 TGATTTTACTGTTGCAGAAACTCT 57.057 33.333 2.91 0.00 39.70 3.24
5161 6405 7.985634 TTTGATTTTACTGTTGCAGAAACTC 57.014 32.000 2.91 4.57 39.70 3.01
5162 6406 8.034804 AGTTTTGATTTTACTGTTGCAGAAACT 58.965 29.630 2.91 3.53 39.70 2.66
5163 6407 8.185003 AGTTTTGATTTTACTGTTGCAGAAAC 57.815 30.769 2.91 1.49 39.41 2.78
5164 6408 9.862371 TTAGTTTTGATTTTACTGTTGCAGAAA 57.138 25.926 2.91 0.00 35.18 2.52
5165 6409 9.515020 CTTAGTTTTGATTTTACTGTTGCAGAA 57.485 29.630 2.91 0.00 35.18 3.02
5166 6410 8.682710 ACTTAGTTTTGATTTTACTGTTGCAGA 58.317 29.630 2.91 0.00 35.18 4.26
5167 6411 8.856490 ACTTAGTTTTGATTTTACTGTTGCAG 57.144 30.769 0.00 0.00 37.52 4.41
5226 6470 8.641155 GCACTTAAAACTTTTGTAAACGTTTCT 58.359 29.630 18.42 0.00 38.78 2.52
5227 6471 8.641155 AGCACTTAAAACTTTTGTAAACGTTTC 58.359 29.630 18.42 9.90 38.78 2.78
5228 6472 8.523523 AGCACTTAAAACTTTTGTAAACGTTT 57.476 26.923 18.90 18.90 40.61 3.60
5229 6473 8.429299 CAAGCACTTAAAACTTTTGTAAACGTT 58.571 29.630 0.00 0.00 32.58 3.99
5230 6474 7.411049 GCAAGCACTTAAAACTTTTGTAAACGT 60.411 33.333 0.00 0.00 0.00 3.99
5231 6475 6.892430 GCAAGCACTTAAAACTTTTGTAAACG 59.108 34.615 0.00 0.00 0.00 3.60
5232 6476 7.734554 TGCAAGCACTTAAAACTTTTGTAAAC 58.265 30.769 0.00 0.00 0.00 2.01
5233 6477 7.891183 TGCAAGCACTTAAAACTTTTGTAAA 57.109 28.000 0.00 0.00 0.00 2.01
5234 6478 7.891183 TTGCAAGCACTTAAAACTTTTGTAA 57.109 28.000 0.00 0.00 0.00 2.41
5235 6479 7.891183 TTTGCAAGCACTTAAAACTTTTGTA 57.109 28.000 0.00 0.00 0.00 2.41
5236 6480 6.793492 TTTGCAAGCACTTAAAACTTTTGT 57.207 29.167 0.00 0.00 0.00 2.83
5237 6481 8.672214 ATTTTTGCAAGCACTTAAAACTTTTG 57.328 26.923 0.00 0.00 0.00 2.44
5238 6482 9.340695 GAATTTTTGCAAGCACTTAAAACTTTT 57.659 25.926 0.00 0.00 0.00 2.27
5239 6483 8.510505 TGAATTTTTGCAAGCACTTAAAACTTT 58.489 25.926 0.00 0.00 0.00 2.66
5240 6484 8.038492 TGAATTTTTGCAAGCACTTAAAACTT 57.962 26.923 0.00 0.47 0.00 2.66
5241 6485 7.608308 TGAATTTTTGCAAGCACTTAAAACT 57.392 28.000 0.00 0.00 0.00 2.66
5242 6486 8.121708 TGATGAATTTTTGCAAGCACTTAAAAC 58.878 29.630 0.00 0.00 0.00 2.43
5243 6487 8.206325 TGATGAATTTTTGCAAGCACTTAAAA 57.794 26.923 0.00 0.00 0.00 1.52
5244 6488 7.783090 TGATGAATTTTTGCAAGCACTTAAA 57.217 28.000 0.00 0.00 0.00 1.52
5245 6489 7.656542 TCATGATGAATTTTTGCAAGCACTTAA 59.343 29.630 0.00 0.00 0.00 1.85
5246 6490 7.153315 TCATGATGAATTTTTGCAAGCACTTA 58.847 30.769 0.00 0.00 0.00 2.24
5247 6491 5.992829 TCATGATGAATTTTTGCAAGCACTT 59.007 32.000 0.00 0.00 0.00 3.16
5248 6492 5.543714 TCATGATGAATTTTTGCAAGCACT 58.456 33.333 0.00 0.00 0.00 4.40
5249 6493 5.849357 TCATGATGAATTTTTGCAAGCAC 57.151 34.783 0.00 0.00 0.00 4.40
5250 6494 6.862711 TTTCATGATGAATTTTTGCAAGCA 57.137 29.167 8.90 0.00 36.11 3.91
5251 6495 7.480542 GTGATTTCATGATGAATTTTTGCAAGC 59.519 33.333 8.90 0.00 36.11 4.01
5252 6496 8.499967 TGTGATTTCATGATGAATTTTTGCAAG 58.500 29.630 8.90 0.00 36.11 4.01
5253 6497 8.379457 TGTGATTTCATGATGAATTTTTGCAA 57.621 26.923 8.90 0.00 36.11 4.08
5254 6498 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
5255 6499 9.834628 AAATGTGATTTCATGATGAATTTTTGC 57.165 25.926 8.90 0.00 36.11 3.68
5270 6514 6.623767 GCCACACCTTCTAGAAATGTGATTTC 60.624 42.308 32.18 20.94 46.90 2.17
5271 6515 5.183904 GCCACACCTTCTAGAAATGTGATTT 59.816 40.000 32.18 15.64 38.64 2.17
5272 6516 4.702131 GCCACACCTTCTAGAAATGTGATT 59.298 41.667 32.18 16.14 38.64 2.57
5273 6517 4.263462 TGCCACACCTTCTAGAAATGTGAT 60.263 41.667 32.18 18.86 38.64 3.06
5274 6518 3.072330 TGCCACACCTTCTAGAAATGTGA 59.928 43.478 32.18 20.13 38.64 3.58
5275 6519 3.411446 TGCCACACCTTCTAGAAATGTG 58.589 45.455 27.67 27.67 37.29 3.21
5276 6520 3.788227 TGCCACACCTTCTAGAAATGT 57.212 42.857 13.76 13.76 0.00 2.71
5277 6521 5.452078 TTTTGCCACACCTTCTAGAAATG 57.548 39.130 6.63 10.28 0.00 2.32
5302 6546 8.462016 AGTAGCATTTTCAGATTAGCGATTTTT 58.538 29.630 0.00 0.00 0.00 1.94
5303 6547 7.989826 AGTAGCATTTTCAGATTAGCGATTTT 58.010 30.769 0.00 0.00 0.00 1.82
5304 6548 7.559590 AGTAGCATTTTCAGATTAGCGATTT 57.440 32.000 0.00 0.00 0.00 2.17
5305 6549 7.559590 AAGTAGCATTTTCAGATTAGCGATT 57.440 32.000 0.00 0.00 0.00 3.34
5306 6550 7.280876 TGAAAGTAGCATTTTCAGATTAGCGAT 59.719 33.333 6.29 0.00 39.05 4.58
5307 6551 6.593770 TGAAAGTAGCATTTTCAGATTAGCGA 59.406 34.615 6.29 0.00 39.05 4.93
5308 6552 6.775088 TGAAAGTAGCATTTTCAGATTAGCG 58.225 36.000 6.29 0.00 39.05 4.26
5309 6553 8.970691 TTTGAAAGTAGCATTTTCAGATTAGC 57.029 30.769 9.30 0.00 43.22 3.09
5311 6555 9.410556 GCTTTTGAAAGTAGCATTTTCAGATTA 57.589 29.630 5.47 0.00 43.22 1.75
5312 6556 7.927629 TGCTTTTGAAAGTAGCATTTTCAGATT 59.072 29.630 0.45 0.00 43.22 2.40
5313 6557 7.436118 TGCTTTTGAAAGTAGCATTTTCAGAT 58.564 30.769 0.45 0.00 43.22 2.90
5314 6558 6.804677 TGCTTTTGAAAGTAGCATTTTCAGA 58.195 32.000 0.45 4.38 43.22 3.27
5332 6576 4.405116 TTCAGTGCTCCAAAATGCTTTT 57.595 36.364 0.00 0.00 0.00 2.27
5333 6577 4.612264 ATTCAGTGCTCCAAAATGCTTT 57.388 36.364 0.00 0.00 0.00 3.51
5334 6578 4.612264 AATTCAGTGCTCCAAAATGCTT 57.388 36.364 0.00 0.00 0.00 3.91
5335 6579 4.202284 ACAAATTCAGTGCTCCAAAATGCT 60.202 37.500 0.00 0.00 0.00 3.79
5336 6580 4.060205 ACAAATTCAGTGCTCCAAAATGC 58.940 39.130 0.00 0.00 0.00 3.56
5337 6581 6.607735 AAACAAATTCAGTGCTCCAAAATG 57.392 33.333 0.00 0.00 0.00 2.32
5338 6582 7.628769 AAAAACAAATTCAGTGCTCCAAAAT 57.371 28.000 0.00 0.00 0.00 1.82
5373 6617 6.313658 TCATCGTGAAATCACATTCCTGTAAG 59.686 38.462 13.51 0.00 46.75 2.34
5374 6618 6.169800 TCATCGTGAAATCACATTCCTGTAA 58.830 36.000 13.51 0.00 46.75 2.41
5375 6619 5.729510 TCATCGTGAAATCACATTCCTGTA 58.270 37.500 13.51 0.00 46.75 2.74
5376 6620 4.578871 TCATCGTGAAATCACATTCCTGT 58.421 39.130 13.51 0.00 46.75 4.00
5377 6621 5.550232 TTCATCGTGAAATCACATTCCTG 57.450 39.130 13.51 3.72 46.75 3.86
5378 6622 6.764308 AATTCATCGTGAAATCACATTCCT 57.236 33.333 13.51 0.00 46.75 3.36
5379 6623 7.816945 AAAATTCATCGTGAAATCACATTCC 57.183 32.000 13.51 0.00 46.75 3.01
5380 6624 7.685304 GCAAAAATTCATCGTGAAATCACATTC 59.315 33.333 13.51 0.00 46.75 2.67
5381 6625 7.171167 TGCAAAAATTCATCGTGAAATCACATT 59.829 29.630 13.51 2.95 46.75 2.71
5382 6626 6.645827 TGCAAAAATTCATCGTGAAATCACAT 59.354 30.769 13.51 4.06 46.75 3.21
5383 6627 5.981915 TGCAAAAATTCATCGTGAAATCACA 59.018 32.000 13.51 1.99 46.75 3.58
5384 6628 6.400303 CCTGCAAAAATTCATCGTGAAATCAC 60.400 38.462 3.43 3.43 40.12 3.06
5385 6629 5.634439 CCTGCAAAAATTCATCGTGAAATCA 59.366 36.000 4.87 0.00 40.12 2.57
5386 6630 5.634859 ACCTGCAAAAATTCATCGTGAAATC 59.365 36.000 4.87 0.00 40.12 2.17
5387 6631 5.540911 ACCTGCAAAAATTCATCGTGAAAT 58.459 33.333 4.87 0.00 40.12 2.17
5388 6632 4.942852 ACCTGCAAAAATTCATCGTGAAA 58.057 34.783 4.87 0.00 40.12 2.69
5389 6633 4.582701 ACCTGCAAAAATTCATCGTGAA 57.417 36.364 3.49 3.49 41.09 3.18
5390 6634 4.759693 AGTACCTGCAAAAATTCATCGTGA 59.240 37.500 0.00 0.00 0.00 4.35
5391 6635 5.046910 AGTACCTGCAAAAATTCATCGTG 57.953 39.130 0.00 0.00 0.00 4.35
5392 6636 5.705609 AAGTACCTGCAAAAATTCATCGT 57.294 34.783 0.00 0.00 0.00 3.73
5393 6637 7.072177 TCTAAGTACCTGCAAAAATTCATCG 57.928 36.000 0.00 0.00 0.00 3.84
5394 6638 8.515414 AGTTCTAAGTACCTGCAAAAATTCATC 58.485 33.333 0.00 0.00 0.00 2.92
5395 6639 8.409358 AGTTCTAAGTACCTGCAAAAATTCAT 57.591 30.769 0.00 0.00 0.00 2.57
5396 6640 7.817418 AGTTCTAAGTACCTGCAAAAATTCA 57.183 32.000 0.00 0.00 0.00 2.57
5397 6641 9.529325 AAAAGTTCTAAGTACCTGCAAAAATTC 57.471 29.630 0.00 0.00 0.00 2.17
5398 6642 9.313118 CAAAAGTTCTAAGTACCTGCAAAAATT 57.687 29.630 0.00 0.00 0.00 1.82
5399 6643 8.474831 ACAAAAGTTCTAAGTACCTGCAAAAAT 58.525 29.630 0.00 0.00 0.00 1.82
5400 6644 7.832769 ACAAAAGTTCTAAGTACCTGCAAAAA 58.167 30.769 0.00 0.00 0.00 1.94
5401 6645 7.121463 TGACAAAAGTTCTAAGTACCTGCAAAA 59.879 33.333 0.00 0.00 0.00 2.44
5402 6646 6.600032 TGACAAAAGTTCTAAGTACCTGCAAA 59.400 34.615 0.00 0.00 0.00 3.68
5403 6647 6.116806 TGACAAAAGTTCTAAGTACCTGCAA 58.883 36.000 0.00 0.00 0.00 4.08
5404 6648 5.676552 TGACAAAAGTTCTAAGTACCTGCA 58.323 37.500 0.00 0.00 0.00 4.41
5405 6649 6.613755 TTGACAAAAGTTCTAAGTACCTGC 57.386 37.500 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.