Multiple sequence alignment - TraesCS3B01G376000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G376000 chr3B 100.000 7597 0 0 1 7597 591461796 591454200 0.000000e+00 14030.0
1 TraesCS3B01G376000 chr3A 94.011 3974 153 34 2214 6154 593355708 593351787 0.000000e+00 5941.0
2 TraesCS3B01G376000 chr3A 92.711 1468 79 17 748 2204 593357320 593355870 0.000000e+00 2093.0
3 TraesCS3B01G376000 chr3A 93.593 718 37 5 6174 6888 593351598 593350887 0.000000e+00 1062.0
4 TraesCS3B01G376000 chr3A 86.504 615 43 10 6993 7596 593350778 593350193 2.310000e-179 640.0
5 TraesCS3B01G376000 chr3D 93.638 2845 141 19 781 3605 449754932 449752108 0.000000e+00 4215.0
6 TraesCS3B01G376000 chr3D 94.871 2281 83 17 3607 5878 449752020 449749765 0.000000e+00 3533.0
7 TraesCS3B01G376000 chr3D 92.755 911 47 9 5991 6888 449749734 449748830 0.000000e+00 1299.0
8 TraesCS3B01G376000 chr3D 90.506 474 25 6 6904 7372 449748846 449748388 6.520000e-170 608.0
9 TraesCS3B01G376000 chr3D 94.231 52 3 0 4470 4521 173579362 173579413 6.320000e-11 80.5
10 TraesCS3B01G376000 chr2A 79.430 491 80 11 6126 6604 69304196 69304677 2.040000e-85 327.0
11 TraesCS3B01G376000 chr1B 76.951 551 94 17 1 527 646558353 646558894 4.490000e-72 283.0
12 TraesCS3B01G376000 chr1B 89.032 155 13 3 581 732 592553744 592553897 1.010000e-43 189.0
13 TraesCS3B01G376000 chr1B 91.803 61 4 1 4469 4528 560219638 560219698 4.890000e-12 84.2
14 TraesCS3B01G376000 chr7D 90.667 150 10 3 587 732 8052581 8052432 6.010000e-46 196.0
15 TraesCS3B01G376000 chr5B 76.487 353 76 6 1 349 324389881 324390230 1.300000e-42 185.0
16 TraesCS3B01G376000 chr5B 78.000 250 53 2 1 249 275764541 275764789 1.020000e-33 156.0
17 TraesCS3B01G376000 chr7B 86.842 152 14 5 586 732 418777400 418777250 1.700000e-36 165.0
18 TraesCS3B01G376000 chr1A 75.912 274 51 13 1 267 455021754 455022019 8.000000e-25 126.0
19 TraesCS3B01G376000 chr6B 91.463 82 6 1 4435 4516 538070732 538070652 2.240000e-20 111.0
20 TraesCS3B01G376000 chr5D 88.506 87 7 3 4431 4516 353482981 353483065 1.350000e-17 102.0
21 TraesCS3B01G376000 chr6D 96.226 53 2 0 4469 4521 94768082 94768030 3.780000e-13 87.9
22 TraesCS3B01G376000 chr4B 94.340 53 2 1 4469 4521 576192177 576192126 6.320000e-11 80.5
23 TraesCS3B01G376000 chr4A 91.071 56 5 0 4469 4524 636365182 636365127 8.170000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G376000 chr3B 591454200 591461796 7596 True 14030.00 14030 100.00000 1 7597 1 chr3B.!!$R1 7596
1 TraesCS3B01G376000 chr3A 593350193 593357320 7127 True 2434.00 5941 91.70475 748 7596 4 chr3A.!!$R1 6848
2 TraesCS3B01G376000 chr3D 449748388 449754932 6544 True 2413.75 4215 92.94250 781 7372 4 chr3D.!!$R1 6591
3 TraesCS3B01G376000 chr1B 646558353 646558894 541 False 283.00 283 76.95100 1 527 1 chr1B.!!$F3 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 259 0.031994 GAGATCTTCCTCTCGCAGCC 59.968 60.0 0.00 0.00 32.90 4.85 F
704 723 0.396435 AGTCATCACCAACTTGGCGA 59.604 50.0 7.81 4.26 42.67 5.54 F
748 767 0.446222 TGCTTTTATTCGCGTCCAGC 59.554 50.0 5.77 7.23 43.95 4.85 F
749 768 0.727398 GCTTTTATTCGCGTCCAGCT 59.273 50.0 5.77 0.00 45.59 4.24 F
767 786 0.866061 CTGTTGCTATCGACCGTCCG 60.866 60.0 0.00 0.00 0.00 4.79 F
1077 1107 0.904865 AGCACCTGAACCTCGATCCA 60.905 55.0 0.00 0.00 0.00 3.41 F
1097 1127 0.914902 GTAAGCCCCTCCACCCTTCT 60.915 60.0 0.00 0.00 0.00 2.85 F
2972 3160 0.109723 TTGTTCCTGTGGGCTGTACC 59.890 55.0 0.00 0.00 37.93 3.34 F
4248 4533 0.178843 AGGGAAGGAGGGCAGGTTAA 60.179 55.0 0.00 0.00 0.00 2.01 F
4774 5079 0.102300 AAGACTGCCGGCAAAACAAC 59.898 50.0 32.09 16.80 0.00 3.32 F
4775 5080 1.034838 AGACTGCCGGCAAAACAACA 61.035 50.0 32.09 4.31 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1077 1107 0.914902 GAAGGGTGGAGGGGCTTACT 60.915 60.000 0.00 0.00 0.00 2.24 R
1981 2015 1.213182 ACAGAGACTATGCCGAGGAGA 59.787 52.381 0.00 0.00 0.00 3.71 R
2076 2110 2.105477 GCCATATCAGACCATGGTCAGT 59.895 50.000 39.38 27.60 46.76 3.41 R
2080 2114 2.130193 AGTGCCATATCAGACCATGGT 58.870 47.619 19.89 19.89 43.14 3.55 R
2186 2220 2.178474 AACACGGTACATAGTACGCG 57.822 50.000 3.53 3.53 0.00 6.01 R
2952 3140 1.271926 GGTACAGCCCACAGGAACAAT 60.272 52.381 0.00 0.00 33.47 2.71 R
3085 3273 0.101219 GACATCTTTGAATGGGCGGC 59.899 55.000 0.00 0.00 0.00 6.53 R
4775 5080 0.036199 CTTTCTCTGCAGCTGCCTCT 60.036 55.000 34.64 0.00 41.18 3.69 R
5718 6029 1.004745 GGAGGAATCAAAGGCTCCACA 59.995 52.381 0.00 0.00 0.00 4.17 R
6321 6809 2.154567 ATCATGCTGAATGGCCAACT 57.845 45.000 10.96 0.00 36.86 3.16 R
6689 7180 5.643777 ACTGACAACTCTGTTAACATATGGC 59.356 40.000 9.13 8.59 35.30 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.289525 CCGTCCTGGGTGACTCTC 58.710 66.667 0.00 0.00 32.97 3.20
34 35 0.833949 GGGTGACTCTCTCCCAATCC 59.166 60.000 4.76 0.00 46.69 3.01
35 36 0.833949 GGTGACTCTCTCCCAATCCC 59.166 60.000 0.00 0.00 0.00 3.85
53 54 1.064166 CCCCCAAGCATGAGAACTGAT 60.064 52.381 0.00 0.00 0.00 2.90
55 56 2.356432 CCCCAAGCATGAGAACTGATCA 60.356 50.000 0.00 0.00 0.00 2.92
56 57 3.552875 CCCAAGCATGAGAACTGATCAT 58.447 45.455 0.00 0.00 37.90 2.45
61 62 7.446319 CCCAAGCATGAGAACTGATCATTATAA 59.554 37.037 0.00 0.00 35.20 0.98
63 64 9.880064 CAAGCATGAGAACTGATCATTATAAAG 57.120 33.333 0.00 0.00 35.20 1.85
64 65 8.618702 AGCATGAGAACTGATCATTATAAAGG 57.381 34.615 0.00 0.00 35.20 3.11
97 98 3.319122 GTGGCTTGAATTTCACCTCTTGT 59.681 43.478 0.00 0.00 0.00 3.16
141 142 8.920174 TCTCATATTCCGAAAGAACCAGTATTA 58.080 33.333 0.00 0.00 37.29 0.98
157 165 4.266976 CAGTATTACGAGTAGGTTTTGGCG 59.733 45.833 0.00 0.00 0.00 5.69
187 195 3.264897 GCGAGCGCGATTCACCAT 61.265 61.111 15.92 0.00 40.82 3.55
190 198 3.173390 GAGCGCGATTCACCATGCC 62.173 63.158 12.10 0.00 0.00 4.40
197 205 2.891941 GATTCACCATGCCGCCTCCA 62.892 60.000 0.00 0.00 0.00 3.86
211 219 1.679898 CTCCACCGGAGCTTCCTTT 59.320 57.895 9.46 0.00 43.29 3.11
212 220 0.036875 CTCCACCGGAGCTTCCTTTT 59.963 55.000 9.46 0.00 43.29 2.27
218 226 2.224769 ACCGGAGCTTCCTTTTCATCAA 60.225 45.455 9.46 0.00 33.30 2.57
225 233 4.051237 GCTTCCTTTTCATCAAACACCAC 58.949 43.478 0.00 0.00 0.00 4.16
228 236 5.452078 TCCTTTTCATCAAACACCACATC 57.548 39.130 0.00 0.00 0.00 3.06
235 243 3.676291 TCAAACACCACATCATCGAGA 57.324 42.857 0.00 0.00 0.00 4.04
238 246 4.081476 TCAAACACCACATCATCGAGATCT 60.081 41.667 0.00 0.00 33.72 2.75
244 252 3.573538 CCACATCATCGAGATCTTCCTCT 59.426 47.826 0.00 0.00 33.72 3.69
245 253 4.321156 CCACATCATCGAGATCTTCCTCTC 60.321 50.000 0.00 0.00 38.64 3.20
251 259 0.031994 GAGATCTTCCTCTCGCAGCC 59.968 60.000 0.00 0.00 32.90 4.85
256 264 3.254024 TTCCTCTCGCAGCCCCAAC 62.254 63.158 0.00 0.00 0.00 3.77
259 267 2.604686 TCTCGCAGCCCCAACTCT 60.605 61.111 0.00 0.00 0.00 3.24
269 277 1.887956 GCCCCAACTCTTTCATCAGCA 60.888 52.381 0.00 0.00 0.00 4.41
274 282 4.515361 CCAACTCTTTCATCAGCATCTCT 58.485 43.478 0.00 0.00 0.00 3.10
277 285 5.929058 ACTCTTTCATCAGCATCTCTACA 57.071 39.130 0.00 0.00 0.00 2.74
282 290 7.153315 TCTTTCATCAGCATCTCTACATCATC 58.847 38.462 0.00 0.00 0.00 2.92
283 291 5.056894 TCATCAGCATCTCTACATCATCG 57.943 43.478 0.00 0.00 0.00 3.84
284 292 3.930634 TCAGCATCTCTACATCATCGG 57.069 47.619 0.00 0.00 0.00 4.18
285 293 3.225940 TCAGCATCTCTACATCATCGGT 58.774 45.455 0.00 0.00 0.00 4.69
286 294 3.254411 TCAGCATCTCTACATCATCGGTC 59.746 47.826 0.00 0.00 0.00 4.79
289 297 3.505680 GCATCTCTACATCATCGGTCTCT 59.494 47.826 0.00 0.00 0.00 3.10
290 298 4.615682 GCATCTCTACATCATCGGTCTCTG 60.616 50.000 0.00 0.00 0.00 3.35
292 300 1.957177 TCTACATCATCGGTCTCTGCC 59.043 52.381 0.00 0.00 0.00 4.85
293 301 1.683385 CTACATCATCGGTCTCTGCCA 59.317 52.381 0.00 0.00 0.00 4.92
296 304 1.343789 CATCATCGGTCTCTGCCAGAT 59.656 52.381 0.00 0.00 32.08 2.90
298 306 0.749049 CATCGGTCTCTGCCAGATCA 59.251 55.000 0.00 0.00 30.44 2.92
303 311 2.588314 CTCTGCCAGATCAGCCGC 60.588 66.667 0.00 0.00 34.19 6.53
310 318 4.218578 AGATCAGCCGCAGCCGAG 62.219 66.667 0.00 0.00 41.25 4.63
324 332 2.820037 CGAGCCCGAAGCCTTTCC 60.820 66.667 0.00 0.00 45.47 3.13
329 339 1.308783 GCCCGAAGCCTTTCCTGAAG 61.309 60.000 0.00 0.00 34.35 3.02
336 346 3.625649 AGCCTTTCCTGAAGACATCTC 57.374 47.619 0.00 0.00 37.57 2.75
337 347 2.909006 AGCCTTTCCTGAAGACATCTCA 59.091 45.455 0.00 0.00 37.57 3.27
340 350 4.083057 GCCTTTCCTGAAGACATCTCAAAC 60.083 45.833 0.00 0.00 37.57 2.93
348 358 4.262617 GAAGACATCTCAAACCCTAACCC 58.737 47.826 0.00 0.00 0.00 4.11
351 361 2.027469 ACATCTCAAACCCTAACCCGAC 60.027 50.000 0.00 0.00 0.00 4.79
353 363 3.173953 TCTCAAACCCTAACCCGACTA 57.826 47.619 0.00 0.00 0.00 2.59
356 366 3.999001 CTCAAACCCTAACCCGACTAAAC 59.001 47.826 0.00 0.00 0.00 2.01
357 367 3.647590 TCAAACCCTAACCCGACTAAACT 59.352 43.478 0.00 0.00 0.00 2.66
358 368 4.102996 TCAAACCCTAACCCGACTAAACTT 59.897 41.667 0.00 0.00 0.00 2.66
359 369 5.306678 TCAAACCCTAACCCGACTAAACTTA 59.693 40.000 0.00 0.00 0.00 2.24
364 374 5.506982 CCCTAACCCGACTAAACTTAGATCG 60.507 48.000 3.50 8.39 35.77 3.69
390 400 0.695803 CCAGATGGAACCCTAGCCCT 60.696 60.000 0.00 0.00 37.39 5.19
391 401 0.761802 CAGATGGAACCCTAGCCCTC 59.238 60.000 0.00 0.00 0.00 4.30
392 402 0.400670 AGATGGAACCCTAGCCCTCC 60.401 60.000 0.00 0.00 0.00 4.30
393 403 1.759459 GATGGAACCCTAGCCCTCCG 61.759 65.000 0.00 0.00 0.00 4.63
396 406 4.416601 AACCCTAGCCCTCCGCCT 62.417 66.667 0.00 0.00 38.78 5.52
397 407 3.945064 AACCCTAGCCCTCCGCCTT 62.945 63.158 0.00 0.00 38.78 4.35
398 408 2.122989 CCCTAGCCCTCCGCCTTA 60.123 66.667 0.00 0.00 38.78 2.69
399 409 2.508751 CCCTAGCCCTCCGCCTTAC 61.509 68.421 0.00 0.00 38.78 2.34
401 411 2.445274 TAGCCCTCCGCCTTACCC 60.445 66.667 0.00 0.00 38.78 3.69
402 412 3.320411 TAGCCCTCCGCCTTACCCA 62.320 63.158 0.00 0.00 38.78 4.51
403 413 4.176752 GCCCTCCGCCTTACCCAG 62.177 72.222 0.00 0.00 0.00 4.45
405 415 4.176752 CCTCCGCCTTACCCAGCC 62.177 72.222 0.00 0.00 0.00 4.85
406 416 4.176752 CTCCGCCTTACCCAGCCC 62.177 72.222 0.00 0.00 0.00 5.19
412 422 4.041762 CTTACCCAGCCCCGCCAA 62.042 66.667 0.00 0.00 0.00 4.52
413 423 3.577334 CTTACCCAGCCCCGCCAAA 62.577 63.158 0.00 0.00 0.00 3.28
425 438 3.365265 GCCAAAGACCAGTGGGCG 61.365 66.667 15.21 0.00 34.63 6.13
428 441 2.113139 AAAGACCAGTGGGCGTGG 59.887 61.111 15.21 0.00 41.30 4.94
456 469 4.469883 CCCCCGATCAAGCATGAG 57.530 61.111 0.00 0.00 39.39 2.90
458 471 1.699054 CCCCCGATCAAGCATGAGGA 61.699 60.000 0.00 0.00 39.39 3.71
462 475 1.579698 CGATCAAGCATGAGGACCAG 58.420 55.000 0.00 0.00 39.39 4.00
463 476 1.809271 CGATCAAGCATGAGGACCAGG 60.809 57.143 0.00 0.00 39.39 4.45
466 479 1.229951 AAGCATGAGGACCAGGGGA 60.230 57.895 0.00 0.00 0.00 4.81
469 482 1.750930 CATGAGGACCAGGGGATCG 59.249 63.158 0.00 0.00 0.00 3.69
473 486 2.034048 GAGGACCAGGGGATCGAAGC 62.034 65.000 0.00 0.00 0.00 3.86
474 487 2.107141 GACCAGGGGATCGAAGCG 59.893 66.667 0.00 0.00 0.00 4.68
486 499 1.141234 CGAAGCGGAGGTAGGGAAC 59.859 63.158 0.00 0.00 37.06 3.62
489 502 0.686769 AAGCGGAGGTAGGGAACGAT 60.687 55.000 0.00 0.00 37.06 3.73
490 503 1.067582 GCGGAGGTAGGGAACGATG 59.932 63.158 0.00 0.00 0.00 3.84
504 517 3.255379 GATGTTCTCGACGGCGGC 61.255 66.667 12.58 7.52 38.28 6.53
535 554 1.823976 CGGGAGGAAGGGTTCTAGC 59.176 63.158 0.00 0.00 0.00 3.42
536 555 0.976073 CGGGAGGAAGGGTTCTAGCA 60.976 60.000 0.00 0.00 0.00 3.49
537 556 1.286248 GGGAGGAAGGGTTCTAGCAA 58.714 55.000 0.00 0.00 0.00 3.91
538 557 1.210722 GGGAGGAAGGGTTCTAGCAAG 59.789 57.143 0.00 0.00 0.00 4.01
539 558 2.188817 GGAGGAAGGGTTCTAGCAAGA 58.811 52.381 0.00 0.00 0.00 3.02
540 559 2.169561 GGAGGAAGGGTTCTAGCAAGAG 59.830 54.545 0.00 0.00 31.96 2.85
541 560 2.169561 GAGGAAGGGTTCTAGCAAGAGG 59.830 54.545 0.00 0.00 31.96 3.69
542 561 1.210722 GGAAGGGTTCTAGCAAGAGGG 59.789 57.143 0.00 0.00 31.96 4.30
543 562 2.188817 GAAGGGTTCTAGCAAGAGGGA 58.811 52.381 0.00 0.00 31.96 4.20
544 563 2.344093 AGGGTTCTAGCAAGAGGGAA 57.656 50.000 0.00 0.00 31.96 3.97
545 564 2.632537 AGGGTTCTAGCAAGAGGGAAA 58.367 47.619 0.00 0.00 31.96 3.13
546 565 2.573915 AGGGTTCTAGCAAGAGGGAAAG 59.426 50.000 0.00 0.00 31.96 2.62
547 566 2.572104 GGGTTCTAGCAAGAGGGAAAGA 59.428 50.000 0.00 0.00 31.96 2.52
548 567 3.009143 GGGTTCTAGCAAGAGGGAAAGAA 59.991 47.826 0.00 0.00 31.96 2.52
549 568 4.004314 GGTTCTAGCAAGAGGGAAAGAAC 58.996 47.826 4.79 4.79 41.19 3.01
550 569 4.505039 GGTTCTAGCAAGAGGGAAAGAACA 60.505 45.833 13.25 0.00 42.81 3.18
551 570 4.974645 TCTAGCAAGAGGGAAAGAACAA 57.025 40.909 0.00 0.00 0.00 2.83
552 571 5.304686 TCTAGCAAGAGGGAAAGAACAAA 57.695 39.130 0.00 0.00 0.00 2.83
553 572 5.063880 TCTAGCAAGAGGGAAAGAACAAAC 58.936 41.667 0.00 0.00 0.00 2.93
554 573 3.903467 AGCAAGAGGGAAAGAACAAACT 58.097 40.909 0.00 0.00 0.00 2.66
555 574 4.281657 AGCAAGAGGGAAAGAACAAACTT 58.718 39.130 0.00 0.00 0.00 2.66
556 575 4.711846 AGCAAGAGGGAAAGAACAAACTTT 59.288 37.500 0.00 0.00 41.86 2.66
557 576 5.187772 AGCAAGAGGGAAAGAACAAACTTTT 59.812 36.000 0.00 0.00 39.71 2.27
558 577 5.874810 GCAAGAGGGAAAGAACAAACTTTTT 59.125 36.000 0.00 0.00 39.71 1.94
582 601 5.398603 TTTTGAGTGGCAGAAAAAGAACA 57.601 34.783 0.00 0.00 0.00 3.18
583 602 4.637483 TTGAGTGGCAGAAAAAGAACAG 57.363 40.909 0.00 0.00 0.00 3.16
584 603 3.884895 TGAGTGGCAGAAAAAGAACAGA 58.115 40.909 0.00 0.00 0.00 3.41
585 604 3.627577 TGAGTGGCAGAAAAAGAACAGAC 59.372 43.478 0.00 0.00 0.00 3.51
586 605 3.879892 GAGTGGCAGAAAAAGAACAGACT 59.120 43.478 0.00 0.00 0.00 3.24
587 606 4.273318 AGTGGCAGAAAAAGAACAGACTT 58.727 39.130 0.00 0.00 0.00 3.01
588 607 4.706962 AGTGGCAGAAAAAGAACAGACTTT 59.293 37.500 0.00 0.00 41.09 2.66
625 644 7.715264 GCATTTAGCTTTATTACGAAACGTT 57.285 32.000 0.00 0.00 39.84 3.99
626 645 7.588834 GCATTTAGCTTTATTACGAAACGTTG 58.411 34.615 0.00 0.00 39.84 4.10
627 646 7.269724 GCATTTAGCTTTATTACGAAACGTTGT 59.730 33.333 0.00 0.00 39.84 3.32
628 647 8.563949 CATTTAGCTTTATTACGAAACGTTGTG 58.436 33.333 0.00 0.00 41.54 3.33
629 648 5.025986 AGCTTTATTACGAAACGTTGTGG 57.974 39.130 0.00 0.00 41.54 4.17
630 649 4.083696 AGCTTTATTACGAAACGTTGTGGG 60.084 41.667 0.00 0.00 41.54 4.61
631 650 3.809918 TTATTACGAAACGTTGTGGGC 57.190 42.857 0.00 0.00 41.54 5.36
632 651 1.595466 ATTACGAAACGTTGTGGGCA 58.405 45.000 0.00 0.00 41.54 5.36
633 652 1.376543 TTACGAAACGTTGTGGGCAA 58.623 45.000 0.00 0.00 41.54 4.52
634 653 0.938713 TACGAAACGTTGTGGGCAAG 59.061 50.000 0.00 0.00 41.54 4.01
635 654 0.745128 ACGAAACGTTGTGGGCAAGA 60.745 50.000 0.00 0.00 36.35 3.02
636 655 0.591170 CGAAACGTTGTGGGCAAGAT 59.409 50.000 0.00 0.00 34.94 2.40
637 656 1.399727 CGAAACGTTGTGGGCAAGATC 60.400 52.381 0.00 0.00 34.94 2.75
638 657 0.591170 AAACGTTGTGGGCAAGATCG 59.409 50.000 0.00 0.00 34.94 3.69
639 658 1.852067 AACGTTGTGGGCAAGATCGC 61.852 55.000 0.00 0.00 34.94 4.58
650 669 2.279741 GCAAGATCGCCATTACACTCA 58.720 47.619 0.00 0.00 0.00 3.41
651 670 2.286294 GCAAGATCGCCATTACACTCAG 59.714 50.000 0.00 0.00 0.00 3.35
652 671 2.231215 AGATCGCCATTACACTCAGC 57.769 50.000 0.00 0.00 0.00 4.26
653 672 1.482182 AGATCGCCATTACACTCAGCA 59.518 47.619 0.00 0.00 0.00 4.41
654 673 2.093500 AGATCGCCATTACACTCAGCAA 60.093 45.455 0.00 0.00 0.00 3.91
655 674 1.438651 TCGCCATTACACTCAGCAAC 58.561 50.000 0.00 0.00 0.00 4.17
656 675 1.155889 CGCCATTACACTCAGCAACA 58.844 50.000 0.00 0.00 0.00 3.33
657 676 1.535028 CGCCATTACACTCAGCAACAA 59.465 47.619 0.00 0.00 0.00 2.83
658 677 2.162208 CGCCATTACACTCAGCAACAAT 59.838 45.455 0.00 0.00 0.00 2.71
659 678 3.504863 GCCATTACACTCAGCAACAATG 58.495 45.455 0.00 0.00 0.00 2.82
660 679 3.674138 GCCATTACACTCAGCAACAATGG 60.674 47.826 6.75 6.75 43.36 3.16
661 680 3.504863 CATTACACTCAGCAACAATGGC 58.495 45.455 0.00 0.00 0.00 4.40
662 681 2.566833 TACACTCAGCAACAATGGCT 57.433 45.000 0.00 0.00 43.77 4.75
670 689 3.874392 AGCAACAATGGCTGGAATTAC 57.126 42.857 0.00 0.00 40.80 1.89
671 690 3.164268 AGCAACAATGGCTGGAATTACA 58.836 40.909 0.00 0.00 40.80 2.41
672 691 3.770933 AGCAACAATGGCTGGAATTACAT 59.229 39.130 0.00 0.00 40.80 2.29
673 692 3.866910 GCAACAATGGCTGGAATTACATG 59.133 43.478 0.00 0.00 0.00 3.21
674 693 4.381825 GCAACAATGGCTGGAATTACATGA 60.382 41.667 0.00 0.00 0.00 3.07
675 694 5.682990 GCAACAATGGCTGGAATTACATGAT 60.683 40.000 0.00 0.00 0.00 2.45
676 695 5.779529 ACAATGGCTGGAATTACATGATC 57.220 39.130 0.00 0.00 0.00 2.92
677 696 5.202765 ACAATGGCTGGAATTACATGATCA 58.797 37.500 0.00 0.00 0.00 2.92
678 697 5.301045 ACAATGGCTGGAATTACATGATCAG 59.699 40.000 0.00 0.00 0.00 2.90
679 698 3.216800 TGGCTGGAATTACATGATCAGC 58.783 45.455 0.00 8.64 44.60 4.26
680 699 3.216800 GGCTGGAATTACATGATCAGCA 58.783 45.455 19.17 0.00 46.41 4.41
681 700 3.633525 GGCTGGAATTACATGATCAGCAA 59.366 43.478 19.17 0.00 46.41 3.91
682 701 4.498682 GGCTGGAATTACATGATCAGCAAC 60.499 45.833 19.17 7.49 46.41 4.17
683 702 4.337555 GCTGGAATTACATGATCAGCAACT 59.662 41.667 0.00 0.00 44.68 3.16
684 703 5.528690 GCTGGAATTACATGATCAGCAACTA 59.471 40.000 0.00 0.00 44.68 2.24
685 704 6.038603 GCTGGAATTACATGATCAGCAACTAA 59.961 38.462 0.00 0.00 44.68 2.24
686 705 7.558161 TGGAATTACATGATCAGCAACTAAG 57.442 36.000 0.00 0.00 0.00 2.18
687 706 7.112122 TGGAATTACATGATCAGCAACTAAGT 58.888 34.615 0.00 0.00 0.00 2.24
688 707 7.280876 TGGAATTACATGATCAGCAACTAAGTC 59.719 37.037 0.00 1.46 0.00 3.01
689 708 7.280876 GGAATTACATGATCAGCAACTAAGTCA 59.719 37.037 0.00 0.00 0.00 3.41
690 709 8.743085 AATTACATGATCAGCAACTAAGTCAT 57.257 30.769 0.00 0.00 0.00 3.06
691 710 7.776933 TTACATGATCAGCAACTAAGTCATC 57.223 36.000 0.00 0.00 0.00 2.92
692 711 5.737860 ACATGATCAGCAACTAAGTCATCA 58.262 37.500 0.00 0.00 0.00 3.07
693 712 5.583854 ACATGATCAGCAACTAAGTCATCAC 59.416 40.000 0.00 0.00 0.00 3.06
694 713 4.507710 TGATCAGCAACTAAGTCATCACC 58.492 43.478 0.00 0.00 0.00 4.02
695 714 4.020307 TGATCAGCAACTAAGTCATCACCA 60.020 41.667 0.00 0.00 0.00 4.17
696 715 4.350368 TCAGCAACTAAGTCATCACCAA 57.650 40.909 0.00 0.00 0.00 3.67
697 716 4.065088 TCAGCAACTAAGTCATCACCAAC 58.935 43.478 0.00 0.00 0.00 3.77
698 717 4.067896 CAGCAACTAAGTCATCACCAACT 58.932 43.478 0.00 0.00 0.00 3.16
699 718 4.516698 CAGCAACTAAGTCATCACCAACTT 59.483 41.667 0.00 0.00 39.07 2.66
700 719 4.516698 AGCAACTAAGTCATCACCAACTTG 59.483 41.667 0.00 0.00 36.44 3.16
701 720 4.320494 GCAACTAAGTCATCACCAACTTGG 60.320 45.833 6.24 6.24 45.02 3.61
702 721 3.412386 ACTAAGTCATCACCAACTTGGC 58.588 45.455 7.81 0.00 42.67 4.52
703 722 1.238439 AAGTCATCACCAACTTGGCG 58.762 50.000 7.81 0.00 42.67 5.69
704 723 0.396435 AGTCATCACCAACTTGGCGA 59.604 50.000 7.81 4.26 42.67 5.54
705 724 0.798776 GTCATCACCAACTTGGCGAG 59.201 55.000 7.81 0.00 42.67 5.03
706 725 0.955428 TCATCACCAACTTGGCGAGC 60.955 55.000 7.81 0.00 42.67 5.03
707 726 1.073025 ATCACCAACTTGGCGAGCA 59.927 52.632 7.81 0.00 42.67 4.26
708 727 0.537143 ATCACCAACTTGGCGAGCAA 60.537 50.000 7.81 0.00 42.67 3.91
709 728 1.165907 TCACCAACTTGGCGAGCAAG 61.166 55.000 7.81 0.00 42.67 4.01
710 729 1.898574 ACCAACTTGGCGAGCAAGG 60.899 57.895 7.81 3.96 42.67 3.61
711 730 2.256461 CAACTTGGCGAGCAAGGC 59.744 61.111 0.37 0.00 34.20 4.35
718 737 4.303257 GCGAGCAAGGCCTAACTT 57.697 55.556 5.16 0.00 0.00 2.66
720 739 1.648467 GCGAGCAAGGCCTAACTTGG 61.648 60.000 19.21 11.44 46.10 3.61
729 748 2.364972 GCCTAACTTGGCCATATGGT 57.635 50.000 22.79 0.70 46.82 3.55
730 749 1.956477 GCCTAACTTGGCCATATGGTG 59.044 52.381 22.79 12.78 46.82 4.17
731 750 1.956477 CCTAACTTGGCCATATGGTGC 59.044 52.381 22.79 9.39 37.57 5.01
732 751 2.423373 CCTAACTTGGCCATATGGTGCT 60.423 50.000 22.79 5.66 37.57 4.40
733 752 2.236489 AACTTGGCCATATGGTGCTT 57.764 45.000 22.79 5.24 37.57 3.91
734 753 2.236489 ACTTGGCCATATGGTGCTTT 57.764 45.000 22.79 2.75 37.57 3.51
735 754 2.539302 ACTTGGCCATATGGTGCTTTT 58.461 42.857 22.79 1.16 37.57 2.27
736 755 3.707316 ACTTGGCCATATGGTGCTTTTA 58.293 40.909 22.79 1.87 37.57 1.52
737 756 4.289245 ACTTGGCCATATGGTGCTTTTAT 58.711 39.130 22.79 0.00 37.57 1.40
738 757 4.716287 ACTTGGCCATATGGTGCTTTTATT 59.284 37.500 22.79 0.00 37.57 1.40
739 758 4.935352 TGGCCATATGGTGCTTTTATTC 57.065 40.909 22.79 2.07 37.57 1.75
740 759 3.317711 TGGCCATATGGTGCTTTTATTCG 59.682 43.478 22.79 0.00 37.57 3.34
741 760 3.308530 GCCATATGGTGCTTTTATTCGC 58.691 45.455 22.79 0.00 37.57 4.70
742 761 3.554524 CCATATGGTGCTTTTATTCGCG 58.445 45.455 14.09 0.00 0.00 5.87
743 762 3.003275 CCATATGGTGCTTTTATTCGCGT 59.997 43.478 14.09 0.00 0.00 6.01
744 763 2.825086 ATGGTGCTTTTATTCGCGTC 57.175 45.000 5.77 0.00 0.00 5.19
745 764 0.800012 TGGTGCTTTTATTCGCGTCC 59.200 50.000 5.77 0.00 0.00 4.79
746 765 0.800012 GGTGCTTTTATTCGCGTCCA 59.200 50.000 5.77 0.00 0.00 4.02
747 766 1.202031 GGTGCTTTTATTCGCGTCCAG 60.202 52.381 5.77 0.00 0.00 3.86
748 767 0.446222 TGCTTTTATTCGCGTCCAGC 59.554 50.000 5.77 7.23 43.95 4.85
749 768 0.727398 GCTTTTATTCGCGTCCAGCT 59.273 50.000 5.77 0.00 45.59 4.24
750 769 1.529826 GCTTTTATTCGCGTCCAGCTG 60.530 52.381 6.78 6.78 45.59 4.24
751 770 1.732259 CTTTTATTCGCGTCCAGCTGT 59.268 47.619 13.81 0.00 45.59 4.40
752 771 1.803334 TTTATTCGCGTCCAGCTGTT 58.197 45.000 13.81 0.00 45.59 3.16
753 772 1.075542 TTATTCGCGTCCAGCTGTTG 58.924 50.000 13.81 2.71 45.59 3.33
754 773 1.358725 TATTCGCGTCCAGCTGTTGC 61.359 55.000 13.81 12.13 45.59 4.17
764 783 4.496670 GCTGTTGCTATCGACCGT 57.503 55.556 0.00 0.00 36.03 4.83
765 784 2.288969 GCTGTTGCTATCGACCGTC 58.711 57.895 0.00 0.00 36.03 4.79
766 785 1.146358 GCTGTTGCTATCGACCGTCC 61.146 60.000 0.00 0.00 36.03 4.79
767 786 0.866061 CTGTTGCTATCGACCGTCCG 60.866 60.000 0.00 0.00 0.00 4.79
768 787 1.588139 GTTGCTATCGACCGTCCGG 60.588 63.158 3.76 3.76 42.03 5.14
857 876 3.756963 GGATATCCCGAGCCCATAAAAAC 59.243 47.826 11.02 0.00 0.00 2.43
862 881 2.823154 CCCGAGCCCATAAAAACAAAGA 59.177 45.455 0.00 0.00 0.00 2.52
879 898 5.360591 ACAAAGACTCAGTACAGTCCAAAG 58.639 41.667 9.19 2.04 43.53 2.77
880 899 4.608948 AAGACTCAGTACAGTCCAAAGG 57.391 45.455 9.19 0.00 43.53 3.11
882 901 3.829601 AGACTCAGTACAGTCCAAAGGAG 59.170 47.826 9.19 0.00 43.53 3.69
884 903 3.574826 ACTCAGTACAGTCCAAAGGAGAC 59.425 47.826 0.00 0.00 29.39 3.36
888 914 1.807814 ACAGTCCAAAGGAGACCAGT 58.192 50.000 0.00 0.00 34.67 4.00
900 926 3.528078 AGGAGACCAGTACCACTCATAGA 59.472 47.826 0.00 0.00 0.00 1.98
970 996 1.221781 CTCCACTTCCCCTATCCCTCT 59.778 57.143 0.00 0.00 0.00 3.69
1077 1107 0.904865 AGCACCTGAACCTCGATCCA 60.905 55.000 0.00 0.00 0.00 3.41
1097 1127 0.914902 GTAAGCCCCTCCACCCTTCT 60.915 60.000 0.00 0.00 0.00 2.85
1140 1170 2.427506 GATTTCTGTTGCTTCGGAGGT 58.572 47.619 0.00 0.00 0.00 3.85
1166 1196 1.796459 GCGATAGTGTTCCGTGTTTGT 59.204 47.619 0.00 0.00 39.35 2.83
1196 1226 1.135402 GTCATGTGGGCGTGATTTTCC 60.135 52.381 0.00 0.00 42.01 3.13
1271 1302 4.213482 GGCATGGTTAGTTCACCGATAATC 59.787 45.833 0.00 0.00 40.09 1.75
1300 1331 4.994852 TGCATAGTATCGTGGCTTAAATCC 59.005 41.667 0.00 0.00 0.00 3.01
1309 1340 3.692101 CGTGGCTTAAATCCCATGTTGTA 59.308 43.478 0.00 0.00 34.22 2.41
1327 1358 3.078097 TGTAATTATGCTGCGTTGTGGT 58.922 40.909 0.00 0.00 0.00 4.16
1330 1361 4.552166 AATTATGCTGCGTTGTGGTATC 57.448 40.909 0.00 0.00 0.00 2.24
1336 1367 2.677037 GCTGCGTTGTGGTATCTAGGTT 60.677 50.000 0.00 0.00 0.00 3.50
1361 1392 6.734137 TGGCGATTTTATACATGATTTGGTC 58.266 36.000 0.00 0.00 0.00 4.02
1403 1434 5.366829 AAGTTACCGACAGTTAAATTGCC 57.633 39.130 0.00 0.00 0.00 4.52
1581 1614 7.542534 TGTCAAGTTACTCGTATGTTTTGTT 57.457 32.000 0.00 0.00 0.00 2.83
1636 1670 9.740239 CAAACATATGTTAATATGCAAGAGCTT 57.260 29.630 21.07 0.00 46.62 3.74
1650 1684 5.639506 TGCAAGAGCTTTAGACATCTAACAC 59.360 40.000 0.70 0.00 42.74 3.32
1659 1693 8.507249 GCTTTAGACATCTAACACACATCTTTT 58.493 33.333 0.70 0.00 38.09 2.27
1675 1709 7.944729 ACATCTTTTGTGCTTAATATCCTGT 57.055 32.000 0.00 0.00 37.11 4.00
1692 1726 4.968259 TCCTGTTTAATATGGCTGCGTAT 58.032 39.130 0.00 0.00 0.00 3.06
1737 1771 4.594970 TGTTATCAATCGGGTTGGAACAT 58.405 39.130 14.43 0.00 38.24 2.71
1760 1794 4.510038 ACATTCTTGTTCTCATGGTTGC 57.490 40.909 0.00 0.00 29.55 4.17
1771 1805 7.217200 TGTTCTCATGGTTGCTATACTAATCC 58.783 38.462 0.00 0.00 0.00 3.01
1774 1808 6.211584 TCTCATGGTTGCTATACTAATCCCTC 59.788 42.308 0.00 0.00 0.00 4.30
1821 1855 8.834465 CAAGAATGTGATAAGGAATTGAGTAGG 58.166 37.037 0.00 0.00 0.00 3.18
1924 1958 3.305398 AGCTTGAAACACTAGTCCTCG 57.695 47.619 0.00 0.00 0.00 4.63
2101 2135 2.511218 ACCATGGTCTGATATGGCACTT 59.489 45.455 13.00 2.84 46.16 3.16
2114 2148 9.113838 CTGATATGGCACTTATTGAGTAACTTT 57.886 33.333 0.00 0.00 36.65 2.66
2121 2155 6.404734 GCACTTATTGAGTAACTTTGGGATGG 60.405 42.308 0.00 0.00 36.65 3.51
2122 2156 6.659242 CACTTATTGAGTAACTTTGGGATGGT 59.341 38.462 0.00 0.00 36.65 3.55
2204 2238 1.062587 GACGCGTACTATGTACCGTGT 59.937 52.381 13.97 16.99 45.51 4.49
2206 2240 2.675844 ACGCGTACTATGTACCGTGTTA 59.324 45.455 11.67 0.00 40.71 2.41
2207 2241 3.312421 ACGCGTACTATGTACCGTGTTAT 59.688 43.478 11.67 0.00 40.71 1.89
2208 2242 4.509970 ACGCGTACTATGTACCGTGTTATA 59.490 41.667 11.67 0.00 40.71 0.98
2209 2243 4.840772 CGCGTACTATGTACCGTGTTATAC 59.159 45.833 0.00 0.00 0.00 1.47
2221 2407 8.522003 TGTACCGTGTTATACTGTTATCTTTCA 58.478 33.333 0.00 0.00 0.00 2.69
2242 2428 9.483062 CTTTCATAATTTGCTACTTCTTTCGAG 57.517 33.333 0.00 0.00 0.00 4.04
2288 2474 7.557358 TCTTATCAAGCTTTATTTGCATGGAGA 59.443 33.333 0.00 0.00 31.13 3.71
2565 2751 2.771435 TGATGGAGAACAGCATGCG 58.229 52.632 13.01 9.99 41.26 4.73
2616 2802 3.572682 CCCAGATGTCGGTACTATTAGCA 59.427 47.826 0.00 0.00 0.00 3.49
2722 2908 9.040939 CATTTACGTGAACACCATCATATCTTA 57.959 33.333 0.00 0.00 0.00 2.10
2723 2909 9.778741 ATTTACGTGAACACCATCATATCTTAT 57.221 29.630 0.00 0.00 0.00 1.73
2724 2910 9.607988 TTTACGTGAACACCATCATATCTTATT 57.392 29.630 0.00 0.00 0.00 1.40
2725 2911 9.607988 TTACGTGAACACCATCATATCTTATTT 57.392 29.630 0.00 0.00 0.00 1.40
2726 2912 7.919690 ACGTGAACACCATCATATCTTATTTG 58.080 34.615 0.00 0.00 0.00 2.32
2727 2913 7.012327 ACGTGAACACCATCATATCTTATTTGG 59.988 37.037 0.00 0.00 0.00 3.28
2728 2914 7.012327 CGTGAACACCATCATATCTTATTTGGT 59.988 37.037 0.00 0.00 37.96 3.67
2729 2915 9.337396 GTGAACACCATCATATCTTATTTGGTA 57.663 33.333 0.00 0.00 35.77 3.25
2814 3000 8.585018 CATTTACTTCCCCAAGTTCTAATTGTT 58.415 33.333 0.00 0.00 40.16 2.83
2918 3104 8.108999 TCAGGTTTGAGATGGATCTTTTGATTA 58.891 33.333 0.00 0.00 39.67 1.75
2972 3160 0.109723 TTGTTCCTGTGGGCTGTACC 59.890 55.000 0.00 0.00 37.93 3.34
3085 3273 7.380870 CCGTCTCATTTCTTATCAGTCACTATG 59.619 40.741 0.00 0.00 0.00 2.23
3086 3274 7.096271 CGTCTCATTTCTTATCAGTCACTATGC 60.096 40.741 0.00 0.00 0.00 3.14
3087 3275 7.170658 GTCTCATTTCTTATCAGTCACTATGCC 59.829 40.741 0.00 0.00 0.00 4.40
3204 3392 0.391793 GAAGCCTACCCAGCACACTC 60.392 60.000 0.00 0.00 0.00 3.51
3205 3393 0.838122 AAGCCTACCCAGCACACTCT 60.838 55.000 0.00 0.00 0.00 3.24
3217 3405 4.547532 CAGCACACTCTCGTAAAACTAGT 58.452 43.478 0.00 0.00 0.00 2.57
3270 3458 9.127277 GGTTTATATTGTAATTTGTAGCTGGGA 57.873 33.333 0.00 0.00 0.00 4.37
3371 3568 9.806448 TTATTAATATATGCCCACATTGTCAGT 57.194 29.630 0.00 0.00 37.74 3.41
3416 3613 9.176460 TGAATTTACTGATTGATGCAGAATGTA 57.824 29.630 0.00 0.00 39.31 2.29
3480 3677 2.846206 TCTATCTTCAACCCACCTGCAT 59.154 45.455 0.00 0.00 0.00 3.96
3501 3698 6.049149 GCATCTGCACCTTCTGTAAGTAATA 58.951 40.000 0.00 0.00 41.59 0.98
3655 3938 9.177608 TGATCTGCTAAATAAGTGCTTGTTTAT 57.822 29.630 12.12 1.92 36.20 1.40
3934 4218 1.498264 AGTCAGATGGAGCTGCTGAT 58.502 50.000 7.01 0.00 40.40 2.90
3965 4249 0.339859 TGCAGGGGAGGTACTGATCT 59.660 55.000 0.00 0.00 41.55 2.75
4056 4340 4.677182 AGATTTGGCTGGAACTTTACCAT 58.323 39.130 0.00 0.00 36.79 3.55
4064 4348 6.015772 TGGCTGGAACTTTACCATTTTTACTC 60.016 38.462 0.00 0.00 36.79 2.59
4074 4358 8.485578 TTTACCATTTTTACTCCATTTCTGGT 57.514 30.769 0.00 0.00 43.61 4.00
4110 4394 9.284968 GCATGGTAAACTATAGGATATGTTTGT 57.715 33.333 4.43 0.00 34.88 2.83
4150 4435 6.824305 ATCATGCCCTATTAATTTTCTCCG 57.176 37.500 0.00 0.00 0.00 4.63
4190 4475 4.138290 AGACCGGTCATACTATCAGACTG 58.862 47.826 35.00 0.00 38.17 3.51
4248 4533 0.178843 AGGGAAGGAGGGCAGGTTAA 60.179 55.000 0.00 0.00 0.00 2.01
4348 4633 4.815846 AGCAAATTTTGGCACCAAACTAAG 59.184 37.500 14.31 6.96 44.39 2.18
4361 4646 4.223477 ACCAAACTAAGCATACCCTTCGTA 59.777 41.667 0.00 0.00 0.00 3.43
4451 4737 1.704641 TGTACTCCCTCCGATCCATG 58.295 55.000 0.00 0.00 0.00 3.66
4458 4744 2.303022 TCCCTCCGATCCATGAATAAGC 59.697 50.000 0.00 0.00 0.00 3.09
4461 4747 3.393800 CTCCGATCCATGAATAAGCGTT 58.606 45.455 0.00 0.00 0.00 4.84
4477 4763 4.568152 AGCGTTGCAGTTTTGAACTAAT 57.432 36.364 0.00 0.00 40.46 1.73
4498 4784 5.597813 ATCTTAGTTCAAAACTGCGACAG 57.402 39.130 2.65 5.47 42.84 3.51
4562 4848 6.954852 GTGTTGATTTTCATGTTGTTGTTGTG 59.045 34.615 0.00 0.00 0.00 3.33
4565 4867 5.579904 TGATTTTCATGTTGTTGTTGTGGTG 59.420 36.000 0.00 0.00 0.00 4.17
4576 4878 1.341482 TGTTGTGGTGGTGGTGTTGAT 60.341 47.619 0.00 0.00 0.00 2.57
4617 4919 6.207417 ACCATTGTCAGAACCTATTTCTTGTG 59.793 38.462 0.00 0.00 42.37 3.33
4773 5078 0.383949 GAAGACTGCCGGCAAAACAA 59.616 50.000 32.09 6.08 0.00 2.83
4774 5079 0.102300 AAGACTGCCGGCAAAACAAC 59.898 50.000 32.09 16.80 0.00 3.32
4775 5080 1.034838 AGACTGCCGGCAAAACAACA 61.035 50.000 32.09 4.31 0.00 3.33
4903 5208 1.134580 CCCATCAGCTGACAGGTACAG 60.135 57.143 26.73 13.58 38.27 2.74
5086 5391 5.106673 GCCCAGATGAACTTGTTGTAAGTAC 60.107 44.000 0.00 0.00 0.00 2.73
5092 5397 8.204836 AGATGAACTTGTTGTAAGTACTCAACT 58.795 33.333 21.47 7.48 42.71 3.16
5206 5511 1.805943 CGCCATGTTGTCTTGATCACA 59.194 47.619 0.00 0.00 0.00 3.58
5538 5847 6.574350 ACCATGTAGTTACAGTATCTGAAGC 58.426 40.000 3.70 0.00 39.92 3.86
5542 5851 4.373348 AGTTACAGTATCTGAAGCGGAC 57.627 45.455 3.70 0.00 35.18 4.79
5630 5941 3.872560 CAGTCCAAACTGTAAACGTCC 57.127 47.619 0.00 0.00 46.52 4.79
5633 5944 3.875134 AGTCCAAACTGTAAACGTCCTTG 59.125 43.478 0.00 0.00 33.32 3.61
5642 5953 7.647907 ACTGTAAACGTCCTTGTGTTTATAG 57.352 36.000 15.46 15.46 46.45 1.31
5646 5957 9.275398 TGTAAACGTCCTTGTGTTTATAGAAAT 57.725 29.630 0.00 0.00 41.17 2.17
5718 6029 9.013229 TGTGCTTCAAATAAAGATCATACAGTT 57.987 29.630 0.00 0.00 0.00 3.16
5768 6079 2.322161 CAAGCTTGGAGAACGCATTTG 58.678 47.619 19.14 0.00 0.00 2.32
5801 6112 9.130661 TGGGTAAGAATCATATGTTGTAAATGG 57.869 33.333 1.90 0.00 0.00 3.16
5853 6164 6.928492 CCATTTTATAAAGGTGTGTTTGTGCT 59.072 34.615 0.00 0.00 0.00 4.40
5909 6220 7.899973 TCTTATCTGCATTCATAGCTATGACA 58.100 34.615 31.46 24.51 42.00 3.58
5914 6225 7.270779 TCTGCATTCATAGCTATGACATATCC 58.729 38.462 31.46 16.18 42.00 2.59
5944 6255 5.431765 CCATTTAGTATGCAGTTCTGGACT 58.568 41.667 0.00 0.00 39.89 3.85
6023 6335 1.492176 AGGATCATGCTACCTGTTGGG 59.508 52.381 0.00 0.00 41.89 4.12
6058 6370 5.993106 AGTTTTAAGGAATATCTGCGCTC 57.007 39.130 9.73 0.00 0.00 5.03
6269 6757 6.588204 AGATAACACCGGTAAGCATTTATCA 58.412 36.000 6.87 0.00 30.26 2.15
6447 6937 6.072342 TGCTATTGCATAGTTATTCTGCATGG 60.072 38.462 0.00 0.00 44.65 3.66
6607 7098 4.377431 GGATGTTAAGTGAGCAACTCGTTG 60.377 45.833 5.45 5.45 38.56 4.10
6668 7159 3.066291 TGCGGATGTACCATTTTGTCT 57.934 42.857 0.00 0.00 38.90 3.41
6689 7180 9.814899 TTGTCTTAATGCCCATATTAAATGTTG 57.185 29.630 0.00 0.00 33.48 3.33
6734 7225 8.155821 TCAGTTCTTGACTTATAGTATCCGAG 57.844 38.462 0.00 0.00 36.10 4.63
6793 7285 7.722949 AAAATGACCCTGATGATATTGTTGT 57.277 32.000 0.00 0.00 0.00 3.32
6798 7290 4.400251 ACCCTGATGATATTGTTGTGCAAG 59.600 41.667 0.00 0.00 40.86 4.01
6807 7299 1.511850 TGTTGTGCAAGAGGTGATCG 58.488 50.000 0.00 0.00 0.00 3.69
6819 7311 1.080772 GTGATCGACCGAGTGCACA 60.081 57.895 21.04 0.00 0.00 4.57
6889 7385 9.998106 TTCCAGTTAACTATTATTGCTCTATCC 57.002 33.333 8.04 0.00 0.00 2.59
6890 7386 8.594550 TCCAGTTAACTATTATTGCTCTATCCC 58.405 37.037 8.04 0.00 0.00 3.85
6891 7387 7.824779 CCAGTTAACTATTATTGCTCTATCCCC 59.175 40.741 8.04 0.00 0.00 4.81
6892 7388 7.824779 CAGTTAACTATTATTGCTCTATCCCCC 59.175 40.741 8.04 0.00 0.00 5.40
6893 7389 5.422214 AACTATTATTGCTCTATCCCCCG 57.578 43.478 0.00 0.00 0.00 5.73
6894 7390 2.789409 ATTATTGCTCTATCCCCCGC 57.211 50.000 0.00 0.00 0.00 6.13
6895 7391 1.429930 TTATTGCTCTATCCCCCGCA 58.570 50.000 0.00 0.00 0.00 5.69
6896 7392 1.429930 TATTGCTCTATCCCCCGCAA 58.570 50.000 0.00 0.00 45.16 4.85
6897 7393 0.550914 ATTGCTCTATCCCCCGCAAA 59.449 50.000 0.00 0.00 44.39 3.68
6898 7394 0.329931 TTGCTCTATCCCCCGCAAAA 59.670 50.000 0.00 0.00 39.19 2.44
6899 7395 0.329931 TGCTCTATCCCCCGCAAAAA 59.670 50.000 0.00 0.00 0.00 1.94
6932 7428 8.752766 ATTATTGCTCTATAATTGTGCAATGC 57.247 30.769 21.11 0.00 46.81 3.56
7003 7537 9.587772 GATCTGAAGCAGTTACATCTTTAGTAA 57.412 33.333 0.00 0.00 32.61 2.24
7097 7635 2.508526 CCAAGACTTCTTCCTTGTGGG 58.491 52.381 0.00 0.00 38.39 4.61
7148 7686 2.673368 CTCTCCGTGGCAAAGTATTGTC 59.327 50.000 0.00 0.00 41.62 3.18
7183 7721 2.664851 TTGCCCTTCTCGCACACG 60.665 61.111 0.00 0.00 35.56 4.49
7231 7769 3.955101 TTTTGGCCGCAACCGTCG 61.955 61.111 0.00 0.00 0.00 5.12
7265 7803 3.131933 GCCTAGAAGCTGAATGTCTCTCA 59.868 47.826 0.00 0.00 0.00 3.27
7268 7806 5.811613 CCTAGAAGCTGAATGTCTCTCAAAG 59.188 44.000 0.00 0.00 0.00 2.77
7269 7807 5.226194 AGAAGCTGAATGTCTCTCAAAGT 57.774 39.130 0.00 0.00 0.00 2.66
7270 7808 6.352016 AGAAGCTGAATGTCTCTCAAAGTA 57.648 37.500 0.00 0.00 0.00 2.24
7271 7809 6.162777 AGAAGCTGAATGTCTCTCAAAGTAC 58.837 40.000 0.00 0.00 0.00 2.73
7272 7810 5.736951 AGCTGAATGTCTCTCAAAGTACT 57.263 39.130 0.00 0.00 0.00 2.73
7273 7811 5.719173 AGCTGAATGTCTCTCAAAGTACTC 58.281 41.667 0.00 0.00 0.00 2.59
7274 7812 4.867608 GCTGAATGTCTCTCAAAGTACTCC 59.132 45.833 0.00 0.00 0.00 3.85
7275 7813 5.060662 TGAATGTCTCTCAAAGTACTCCG 57.939 43.478 0.00 0.00 0.00 4.63
7276 7814 4.082190 TGAATGTCTCTCAAAGTACTCCGG 60.082 45.833 0.00 0.00 0.00 5.14
7277 7815 3.150458 TGTCTCTCAAAGTACTCCGGA 57.850 47.619 2.93 2.93 0.00 5.14
7278 7816 3.082548 TGTCTCTCAAAGTACTCCGGAG 58.917 50.000 30.11 30.11 0.00 4.63
7279 7817 3.083293 GTCTCTCAAAGTACTCCGGAGT 58.917 50.000 37.59 37.59 45.02 3.85
7295 7833 1.202313 GGAGTAGTAGCTCAGTTGCGG 60.202 57.143 0.00 0.00 37.24 5.69
7308 7846 1.006337 TTGCGGTCTTTTGCCATGC 60.006 52.632 0.00 0.00 0.00 4.06
7324 7862 2.973082 GCCCAAGCAACCATCACC 59.027 61.111 0.00 0.00 39.53 4.02
7343 7882 1.135527 CCAGGCATGCTTTGGTATGTG 59.864 52.381 24.69 3.66 37.75 3.21
7387 7926 1.933115 ATCCATTTGCGCCCACGTTC 61.933 55.000 4.18 0.00 42.83 3.95
7388 7927 2.642129 CATTTGCGCCCACGTTCA 59.358 55.556 4.18 0.00 42.83 3.18
7389 7928 1.442520 CATTTGCGCCCACGTTCAG 60.443 57.895 4.18 0.00 42.83 3.02
7400 7939 1.002468 CCACGTTCAGTTTGCTCTTGG 60.002 52.381 0.00 0.00 0.00 3.61
7410 7949 3.050275 GCTCTTGGCACGGTGTCC 61.050 66.667 10.66 11.88 41.35 4.02
7433 7972 3.480470 CGCCATGTCTGGGAGAAAATAT 58.520 45.455 0.00 0.00 43.36 1.28
7478 8017 1.605232 TCGAAGAGTAGCGAACACACA 59.395 47.619 0.00 0.00 33.04 3.72
7517 8056 4.035208 GGCATCATTTTACTGGTTCCTACG 59.965 45.833 0.00 0.00 0.00 3.51
7540 8082 1.216710 GAACTGGAGCTGACCCTCG 59.783 63.158 0.00 0.00 32.57 4.63
7558 8100 4.315803 CCTCGTGACCTGAAAAATGTACT 58.684 43.478 0.00 0.00 0.00 2.73
7561 8103 6.335471 TCGTGACCTGAAAAATGTACTCTA 57.665 37.500 0.00 0.00 0.00 2.43
7564 8113 7.384115 TCGTGACCTGAAAAATGTACTCTAAAG 59.616 37.037 0.00 0.00 0.00 1.85
7576 8125 6.387041 TGTACTCTAAAGTCATGGTATCCG 57.613 41.667 0.00 0.00 36.92 4.18
7577 8126 4.323553 ACTCTAAAGTCATGGTATCCGC 57.676 45.455 0.00 0.00 0.00 5.54
7584 8133 1.134521 GTCATGGTATCCGCTCCAACA 60.135 52.381 0.00 0.00 37.27 3.33
7593 8142 1.515521 CCGCTCCAACAAACTCCACC 61.516 60.000 0.00 0.00 0.00 4.61
7596 8145 1.609072 GCTCCAACAAACTCCACCTTC 59.391 52.381 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.973496 GGGAGAGAGTCACCCAGGAC 60.973 65.000 12.99 0.00 45.31 3.85
16 17 0.833949 GGGATTGGGAGAGAGTCACC 59.166 60.000 0.00 0.00 0.00 4.02
25 26 0.757935 CATGCTTGGGGGATTGGGAG 60.758 60.000 0.00 0.00 0.00 4.30
33 34 0.329261 TCAGTTCTCATGCTTGGGGG 59.671 55.000 0.00 0.00 0.00 5.40
34 35 2.295885 GATCAGTTCTCATGCTTGGGG 58.704 52.381 0.00 0.00 0.00 4.96
35 36 2.995283 TGATCAGTTCTCATGCTTGGG 58.005 47.619 0.00 0.00 0.00 4.12
53 54 7.093945 GCCACTTGAGGAAAACCTTTATAATGA 60.094 37.037 0.04 0.00 0.00 2.57
55 56 6.954102 AGCCACTTGAGGAAAACCTTTATAAT 59.046 34.615 0.00 0.00 0.00 1.28
56 57 6.311735 AGCCACTTGAGGAAAACCTTTATAA 58.688 36.000 0.00 0.00 0.00 0.98
61 62 2.695147 CAAGCCACTTGAGGAAAACCTT 59.305 45.455 0.97 0.00 43.42 3.50
63 64 2.306847 TCAAGCCACTTGAGGAAAACC 58.693 47.619 5.94 0.00 44.27 3.27
97 98 0.679002 GAGCAGCTTGGGATCTTGCA 60.679 55.000 0.00 0.00 0.00 4.08
141 142 0.037605 CTCCGCCAAAACCTACTCGT 60.038 55.000 0.00 0.00 0.00 4.18
157 165 4.767255 CTCGCCAGGGTGCACTCC 62.767 72.222 14.62 14.56 0.00 3.85
172 180 2.325857 GCATGGTGAATCGCGCTC 59.674 61.111 5.56 0.25 0.00 5.03
180 188 3.645660 TGGAGGCGGCATGGTGAA 61.646 61.111 13.08 0.00 0.00 3.18
181 189 4.408821 GTGGAGGCGGCATGGTGA 62.409 66.667 13.08 0.00 0.00 4.02
197 205 1.351017 TGATGAAAAGGAAGCTCCGGT 59.649 47.619 0.00 0.00 42.75 5.28
201 209 4.037923 TGGTGTTTGATGAAAAGGAAGCTC 59.962 41.667 0.00 0.00 0.00 4.09
202 210 3.960102 TGGTGTTTGATGAAAAGGAAGCT 59.040 39.130 0.00 0.00 0.00 3.74
208 216 5.570206 CGATGATGTGGTGTTTGATGAAAAG 59.430 40.000 0.00 0.00 0.00 2.27
209 217 5.240403 TCGATGATGTGGTGTTTGATGAAAA 59.760 36.000 0.00 0.00 0.00 2.29
211 219 4.322567 TCGATGATGTGGTGTTTGATGAA 58.677 39.130 0.00 0.00 0.00 2.57
212 220 3.934579 CTCGATGATGTGGTGTTTGATGA 59.065 43.478 0.00 0.00 0.00 2.92
218 226 4.437239 GAAGATCTCGATGATGTGGTGTT 58.563 43.478 0.00 0.00 35.14 3.32
235 243 2.439104 GGGGCTGCGAGAGGAAGAT 61.439 63.158 0.00 0.00 0.00 2.40
238 246 2.927856 TTGGGGCTGCGAGAGGAA 60.928 61.111 0.00 0.00 0.00 3.36
244 252 1.302511 GAAAGAGTTGGGGCTGCGA 60.303 57.895 0.00 0.00 0.00 5.10
245 253 0.962356 ATGAAAGAGTTGGGGCTGCG 60.962 55.000 0.00 0.00 0.00 5.18
246 254 0.813821 GATGAAAGAGTTGGGGCTGC 59.186 55.000 0.00 0.00 0.00 5.25
251 259 3.618351 AGATGCTGATGAAAGAGTTGGG 58.382 45.455 0.00 0.00 0.00 4.12
256 264 6.514063 TGATGTAGAGATGCTGATGAAAGAG 58.486 40.000 0.00 0.00 0.00 2.85
259 267 5.924825 CGATGATGTAGAGATGCTGATGAAA 59.075 40.000 0.00 0.00 0.00 2.69
269 277 3.505680 GCAGAGACCGATGATGTAGAGAT 59.494 47.826 0.00 0.00 0.00 2.75
274 282 1.683385 CTGGCAGAGACCGATGATGTA 59.317 52.381 9.42 0.00 0.00 2.29
277 285 1.617850 GATCTGGCAGAGACCGATGAT 59.382 52.381 23.24 1.91 31.75 2.45
282 290 1.227205 GCTGATCTGGCAGAGACCG 60.227 63.158 23.24 15.45 38.14 4.79
283 291 1.145819 GGCTGATCTGGCAGAGACC 59.854 63.158 23.24 16.19 38.14 3.85
284 292 1.227205 CGGCTGATCTGGCAGAGAC 60.227 63.158 23.24 18.36 38.14 3.36
285 293 3.086391 GCGGCTGATCTGGCAGAGA 62.086 63.158 23.24 10.84 38.14 3.10
286 294 2.588314 GCGGCTGATCTGGCAGAG 60.588 66.667 23.24 10.52 38.14 3.35
310 318 1.303317 TTCAGGAAAGGCTTCGGGC 60.303 57.895 0.00 0.00 41.18 6.13
321 329 3.652869 AGGGTTTGAGATGTCTTCAGGAA 59.347 43.478 0.00 0.00 0.00 3.36
322 330 3.251484 AGGGTTTGAGATGTCTTCAGGA 58.749 45.455 0.00 0.00 0.00 3.86
324 332 4.938226 GGTTAGGGTTTGAGATGTCTTCAG 59.062 45.833 0.00 0.00 0.00 3.02
329 339 2.235402 TCGGGTTAGGGTTTGAGATGTC 59.765 50.000 0.00 0.00 0.00 3.06
336 346 4.011966 AGTTTAGTCGGGTTAGGGTTTG 57.988 45.455 0.00 0.00 0.00 2.93
337 347 4.712051 AAGTTTAGTCGGGTTAGGGTTT 57.288 40.909 0.00 0.00 0.00 3.27
340 350 5.506982 CGATCTAAGTTTAGTCGGGTTAGGG 60.507 48.000 12.14 0.00 34.13 3.53
348 358 4.897025 AGACCCGATCTAAGTTTAGTCG 57.103 45.455 12.64 12.64 35.15 4.18
351 361 5.360144 TCTGGAAGACCCGATCTAAGTTTAG 59.640 44.000 0.00 0.00 38.67 1.85
353 363 4.094476 TCTGGAAGACCCGATCTAAGTTT 58.906 43.478 0.00 0.00 38.67 2.66
386 396 4.176752 CTGGGTAAGGCGGAGGGC 62.177 72.222 0.00 0.00 42.51 5.19
396 406 3.577334 CTTTGGCGGGGCTGGGTAA 62.577 63.158 0.00 0.00 0.00 2.85
397 407 4.041762 CTTTGGCGGGGCTGGGTA 62.042 66.667 0.00 0.00 0.00 3.69
401 411 4.659172 TGGTCTTTGGCGGGGCTG 62.659 66.667 0.00 0.00 0.00 4.85
402 412 4.351054 CTGGTCTTTGGCGGGGCT 62.351 66.667 0.00 0.00 0.00 5.19
403 413 4.660938 ACTGGTCTTTGGCGGGGC 62.661 66.667 0.00 0.00 0.00 5.80
405 415 2.672996 CCACTGGTCTTTGGCGGG 60.673 66.667 0.00 0.00 0.00 6.13
406 416 2.672996 CCCACTGGTCTTTGGCGG 60.673 66.667 0.00 0.00 0.00 6.13
408 418 3.365265 CGCCCACTGGTCTTTGGC 61.365 66.667 0.00 0.00 38.74 4.52
409 419 2.113139 ACGCCCACTGGTCTTTGG 59.887 61.111 0.00 0.00 0.00 3.28
410 420 2.260869 CCACGCCCACTGGTCTTTG 61.261 63.158 0.00 0.00 0.00 2.77
411 421 2.113139 CCACGCCCACTGGTCTTT 59.887 61.111 0.00 0.00 0.00 2.52
412 422 4.643387 GCCACGCCCACTGGTCTT 62.643 66.667 0.00 0.00 0.00 3.01
442 455 0.178767 TGGTCCTCATGCTTGATCGG 59.821 55.000 2.33 2.36 0.00 4.18
444 457 1.476471 CCCTGGTCCTCATGCTTGATC 60.476 57.143 2.33 0.00 0.00 2.92
448 461 0.625683 ATCCCCTGGTCCTCATGCTT 60.626 55.000 0.00 0.00 0.00 3.91
449 462 1.005289 ATCCCCTGGTCCTCATGCT 59.995 57.895 0.00 0.00 0.00 3.79
451 464 0.760567 TCGATCCCCTGGTCCTCATG 60.761 60.000 0.00 0.00 0.00 3.07
453 466 0.687757 CTTCGATCCCCTGGTCCTCA 60.688 60.000 0.00 0.00 0.00 3.86
454 467 2.034048 GCTTCGATCCCCTGGTCCTC 62.034 65.000 0.00 0.00 0.00 3.71
456 469 2.506472 GCTTCGATCCCCTGGTCC 59.494 66.667 0.00 0.00 0.00 4.46
458 471 3.470888 CCGCTTCGATCCCCTGGT 61.471 66.667 0.00 0.00 0.00 4.00
462 475 1.807495 CTACCTCCGCTTCGATCCCC 61.807 65.000 0.00 0.00 0.00 4.81
463 476 1.660917 CTACCTCCGCTTCGATCCC 59.339 63.158 0.00 0.00 0.00 3.85
466 479 0.396695 TTCCCTACCTCCGCTTCGAT 60.397 55.000 0.00 0.00 0.00 3.59
469 482 1.141234 CGTTCCCTACCTCCGCTTC 59.859 63.158 0.00 0.00 0.00 3.86
473 486 0.822164 AACATCGTTCCCTACCTCCG 59.178 55.000 0.00 0.00 0.00 4.63
474 487 2.101082 GAGAACATCGTTCCCTACCTCC 59.899 54.545 3.31 0.00 0.00 4.30
496 509 2.276430 CGATTTTTCGCCGCCGTC 60.276 61.111 0.00 0.00 35.54 4.79
504 517 2.437002 TCCCGGGGCGATTTTTCG 60.437 61.111 23.50 0.00 0.00 3.46
515 534 1.002533 TAGAACCCTTCCTCCCGGG 59.997 63.158 16.85 16.85 46.26 5.73
516 535 1.687297 GCTAGAACCCTTCCTCCCGG 61.687 65.000 0.00 0.00 0.00 5.73
518 537 1.210722 CTTGCTAGAACCCTTCCTCCC 59.789 57.143 0.00 0.00 0.00 4.30
527 546 3.983044 TCTTTCCCTCTTGCTAGAACC 57.017 47.619 0.00 0.00 0.00 3.62
528 547 4.642429 TGTTCTTTCCCTCTTGCTAGAAC 58.358 43.478 0.00 0.00 40.96 3.01
529 548 4.974645 TGTTCTTTCCCTCTTGCTAGAA 57.025 40.909 0.00 0.00 0.00 2.10
530 549 4.974645 TTGTTCTTTCCCTCTTGCTAGA 57.025 40.909 0.00 0.00 0.00 2.43
531 550 5.066593 AGTTTGTTCTTTCCCTCTTGCTAG 58.933 41.667 0.00 0.00 0.00 3.42
532 551 5.048846 AGTTTGTTCTTTCCCTCTTGCTA 57.951 39.130 0.00 0.00 0.00 3.49
533 552 3.903467 AGTTTGTTCTTTCCCTCTTGCT 58.097 40.909 0.00 0.00 0.00 3.91
534 553 4.655762 AAGTTTGTTCTTTCCCTCTTGC 57.344 40.909 0.00 0.00 0.00 4.01
559 578 5.788450 TGTTCTTTTTCTGCCACTCAAAAA 58.212 33.333 0.00 0.00 0.00 1.94
560 579 5.184864 TCTGTTCTTTTTCTGCCACTCAAAA 59.815 36.000 0.00 0.00 0.00 2.44
561 580 4.704540 TCTGTTCTTTTTCTGCCACTCAAA 59.295 37.500 0.00 0.00 0.00 2.69
562 581 4.096382 GTCTGTTCTTTTTCTGCCACTCAA 59.904 41.667 0.00 0.00 0.00 3.02
563 582 3.627577 GTCTGTTCTTTTTCTGCCACTCA 59.372 43.478 0.00 0.00 0.00 3.41
564 583 3.879892 AGTCTGTTCTTTTTCTGCCACTC 59.120 43.478 0.00 0.00 0.00 3.51
565 584 3.891049 AGTCTGTTCTTTTTCTGCCACT 58.109 40.909 0.00 0.00 0.00 4.00
566 585 4.639135 AAGTCTGTTCTTTTTCTGCCAC 57.361 40.909 0.00 0.00 0.00 5.01
567 586 5.659440 AAAAGTCTGTTCTTTTTCTGCCA 57.341 34.783 0.00 0.00 42.58 4.92
601 620 7.269724 ACAACGTTTCGTAATAAAGCTAAATGC 59.730 33.333 0.00 0.00 39.99 3.56
602 621 8.563949 CACAACGTTTCGTAATAAAGCTAAATG 58.436 33.333 0.00 0.00 39.99 2.32
603 622 7.747357 CCACAACGTTTCGTAATAAAGCTAAAT 59.253 33.333 0.00 0.00 39.99 1.40
604 623 7.070798 CCACAACGTTTCGTAATAAAGCTAAA 58.929 34.615 0.00 0.00 39.99 1.85
605 624 6.347563 CCCACAACGTTTCGTAATAAAGCTAA 60.348 38.462 0.00 0.00 39.99 3.09
606 625 5.120519 CCCACAACGTTTCGTAATAAAGCTA 59.879 40.000 0.00 0.00 39.99 3.32
607 626 4.083696 CCCACAACGTTTCGTAATAAAGCT 60.084 41.667 0.00 0.00 39.99 3.74
608 627 4.153256 CCCACAACGTTTCGTAATAAAGC 58.847 43.478 0.00 0.00 39.99 3.51
609 628 4.153256 GCCCACAACGTTTCGTAATAAAG 58.847 43.478 0.00 0.00 39.99 1.85
610 629 3.562973 TGCCCACAACGTTTCGTAATAAA 59.437 39.130 0.00 0.00 39.99 1.40
611 630 3.136763 TGCCCACAACGTTTCGTAATAA 58.863 40.909 0.00 0.00 39.99 1.40
612 631 2.763933 TGCCCACAACGTTTCGTAATA 58.236 42.857 0.00 0.00 39.99 0.98
613 632 1.595466 TGCCCACAACGTTTCGTAAT 58.405 45.000 0.00 0.00 39.99 1.89
614 633 1.331138 CTTGCCCACAACGTTTCGTAA 59.669 47.619 0.00 0.00 39.99 3.18
615 634 0.938713 CTTGCCCACAACGTTTCGTA 59.061 50.000 0.00 0.00 39.99 3.43
616 635 0.745128 TCTTGCCCACAACGTTTCGT 60.745 50.000 0.00 0.00 43.97 3.85
617 636 0.591170 ATCTTGCCCACAACGTTTCG 59.409 50.000 0.00 0.00 0.00 3.46
618 637 1.399727 CGATCTTGCCCACAACGTTTC 60.400 52.381 0.00 0.00 0.00 2.78
619 638 0.591170 CGATCTTGCCCACAACGTTT 59.409 50.000 0.00 0.00 0.00 3.60
620 639 1.852067 GCGATCTTGCCCACAACGTT 61.852 55.000 0.00 0.00 0.00 3.99
621 640 2.325082 GCGATCTTGCCCACAACGT 61.325 57.895 0.00 0.00 0.00 3.99
622 641 2.480555 GCGATCTTGCCCACAACG 59.519 61.111 0.00 0.00 0.00 4.10
630 649 2.279741 TGAGTGTAATGGCGATCTTGC 58.720 47.619 0.00 0.00 0.00 4.01
631 650 2.286294 GCTGAGTGTAATGGCGATCTTG 59.714 50.000 0.00 0.00 0.00 3.02
632 651 2.093500 TGCTGAGTGTAATGGCGATCTT 60.093 45.455 0.00 0.00 0.00 2.40
633 652 1.482182 TGCTGAGTGTAATGGCGATCT 59.518 47.619 0.00 0.00 0.00 2.75
634 653 1.939974 TGCTGAGTGTAATGGCGATC 58.060 50.000 0.00 0.00 0.00 3.69
635 654 2.009774 GTTGCTGAGTGTAATGGCGAT 58.990 47.619 0.00 0.00 0.00 4.58
636 655 1.270571 TGTTGCTGAGTGTAATGGCGA 60.271 47.619 0.00 0.00 0.00 5.54
637 656 1.155889 TGTTGCTGAGTGTAATGGCG 58.844 50.000 0.00 0.00 0.00 5.69
638 657 3.504863 CATTGTTGCTGAGTGTAATGGC 58.495 45.455 0.00 0.00 0.00 4.40
639 658 3.674138 GCCATTGTTGCTGAGTGTAATGG 60.674 47.826 0.00 0.00 44.49 3.16
640 659 3.192001 AGCCATTGTTGCTGAGTGTAATG 59.808 43.478 0.00 0.00 37.76 1.90
641 660 3.424703 AGCCATTGTTGCTGAGTGTAAT 58.575 40.909 0.00 0.00 37.76 1.89
642 661 2.862541 AGCCATTGTTGCTGAGTGTAA 58.137 42.857 0.00 0.00 37.76 2.41
643 662 2.566833 AGCCATTGTTGCTGAGTGTA 57.433 45.000 0.00 0.00 37.76 2.90
644 663 3.426903 AGCCATTGTTGCTGAGTGT 57.573 47.368 0.00 0.00 37.76 3.55
650 669 3.164268 TGTAATTCCAGCCATTGTTGCT 58.836 40.909 0.00 0.00 40.41 3.91
651 670 3.591196 TGTAATTCCAGCCATTGTTGC 57.409 42.857 0.00 0.00 0.00 4.17
652 671 5.327616 TCATGTAATTCCAGCCATTGTTG 57.672 39.130 0.00 0.00 0.00 3.33
653 672 5.657745 TGATCATGTAATTCCAGCCATTGTT 59.342 36.000 0.00 0.00 0.00 2.83
654 673 5.202765 TGATCATGTAATTCCAGCCATTGT 58.797 37.500 0.00 0.00 0.00 2.71
655 674 5.769367 CTGATCATGTAATTCCAGCCATTG 58.231 41.667 0.00 0.00 0.00 2.82
656 675 4.280174 GCTGATCATGTAATTCCAGCCATT 59.720 41.667 0.00 0.00 40.58 3.16
657 676 3.825014 GCTGATCATGTAATTCCAGCCAT 59.175 43.478 0.00 0.00 40.58 4.40
658 677 3.216800 GCTGATCATGTAATTCCAGCCA 58.783 45.455 0.00 0.00 40.58 4.75
659 678 3.216800 TGCTGATCATGTAATTCCAGCC 58.783 45.455 0.00 0.00 44.39 4.85
660 679 4.337555 AGTTGCTGATCATGTAATTCCAGC 59.662 41.667 0.00 0.00 45.01 4.85
661 680 7.281774 ACTTAGTTGCTGATCATGTAATTCCAG 59.718 37.037 0.00 0.00 0.00 3.86
662 681 7.112122 ACTTAGTTGCTGATCATGTAATTCCA 58.888 34.615 0.00 0.00 0.00 3.53
663 682 7.280876 TGACTTAGTTGCTGATCATGTAATTCC 59.719 37.037 0.00 0.00 0.00 3.01
664 683 8.201554 TGACTTAGTTGCTGATCATGTAATTC 57.798 34.615 0.00 0.00 0.00 2.17
665 684 8.743085 ATGACTTAGTTGCTGATCATGTAATT 57.257 30.769 0.00 0.00 0.00 1.40
666 685 7.989170 TGATGACTTAGTTGCTGATCATGTAAT 59.011 33.333 0.00 0.00 0.00 1.89
667 686 7.278646 GTGATGACTTAGTTGCTGATCATGTAA 59.721 37.037 0.00 0.00 0.00 2.41
668 687 6.758416 GTGATGACTTAGTTGCTGATCATGTA 59.242 38.462 0.00 0.00 0.00 2.29
669 688 5.583854 GTGATGACTTAGTTGCTGATCATGT 59.416 40.000 0.00 0.00 0.00 3.21
670 689 5.007430 GGTGATGACTTAGTTGCTGATCATG 59.993 44.000 0.00 0.00 0.00 3.07
671 690 5.121811 GGTGATGACTTAGTTGCTGATCAT 58.878 41.667 0.00 0.00 0.00 2.45
672 691 4.020307 TGGTGATGACTTAGTTGCTGATCA 60.020 41.667 0.00 0.00 0.00 2.92
673 692 4.507710 TGGTGATGACTTAGTTGCTGATC 58.492 43.478 0.00 0.00 0.00 2.92
674 693 4.558226 TGGTGATGACTTAGTTGCTGAT 57.442 40.909 0.00 0.00 0.00 2.90
675 694 4.065088 GTTGGTGATGACTTAGTTGCTGA 58.935 43.478 0.00 0.00 0.00 4.26
676 695 4.067896 AGTTGGTGATGACTTAGTTGCTG 58.932 43.478 0.00 0.00 0.00 4.41
677 696 4.357918 AGTTGGTGATGACTTAGTTGCT 57.642 40.909 0.00 0.00 0.00 3.91
678 697 4.320494 CCAAGTTGGTGATGACTTAGTTGC 60.320 45.833 14.21 0.00 34.52 4.17
679 698 4.320494 GCCAAGTTGGTGATGACTTAGTTG 60.320 45.833 22.85 0.00 40.46 3.16
680 699 3.821033 GCCAAGTTGGTGATGACTTAGTT 59.179 43.478 22.85 0.00 40.46 2.24
681 700 3.412386 GCCAAGTTGGTGATGACTTAGT 58.588 45.455 22.85 0.00 40.46 2.24
692 711 3.749981 CTTGCTCGCCAAGTTGGT 58.250 55.556 22.85 0.00 44.74 3.67
701 720 1.648467 CCAAGTTAGGCCTTGCTCGC 61.648 60.000 12.58 0.00 40.40 5.03
702 721 2.471255 CCAAGTTAGGCCTTGCTCG 58.529 57.895 12.58 0.00 40.40 5.03
711 730 1.956477 GCACCATATGGCCAAGTTAGG 59.044 52.381 22.18 10.61 39.32 2.69
712 731 2.936202 AGCACCATATGGCCAAGTTAG 58.064 47.619 22.18 0.00 39.32 2.34
713 732 3.380471 AAGCACCATATGGCCAAGTTA 57.620 42.857 22.18 0.00 39.32 2.24
714 733 2.236489 AAGCACCATATGGCCAAGTT 57.764 45.000 22.18 5.70 39.32 2.66
715 734 2.236489 AAAGCACCATATGGCCAAGT 57.764 45.000 22.18 1.71 39.32 3.16
716 735 4.942761 ATAAAAGCACCATATGGCCAAG 57.057 40.909 22.18 10.33 39.32 3.61
717 736 4.202101 CGAATAAAAGCACCATATGGCCAA 60.202 41.667 22.18 0.00 39.32 4.52
718 737 3.317711 CGAATAAAAGCACCATATGGCCA 59.682 43.478 22.18 8.56 39.32 5.36
719 738 3.857010 GCGAATAAAAGCACCATATGGCC 60.857 47.826 22.18 12.89 39.32 5.36
720 739 3.308530 GCGAATAAAAGCACCATATGGC 58.691 45.455 22.18 8.76 39.32 4.40
721 740 3.003275 ACGCGAATAAAAGCACCATATGG 59.997 43.478 20.68 20.68 42.17 2.74
722 741 4.209452 ACGCGAATAAAAGCACCATATG 57.791 40.909 15.93 0.00 0.00 1.78
723 742 3.250040 GGACGCGAATAAAAGCACCATAT 59.750 43.478 15.93 0.00 32.54 1.78
724 743 2.610374 GGACGCGAATAAAAGCACCATA 59.390 45.455 15.93 0.00 32.54 2.74
725 744 1.400494 GGACGCGAATAAAAGCACCAT 59.600 47.619 15.93 0.00 32.54 3.55
726 745 0.800012 GGACGCGAATAAAAGCACCA 59.200 50.000 15.93 0.00 32.54 4.17
727 746 0.800012 TGGACGCGAATAAAAGCACC 59.200 50.000 15.93 0.72 0.00 5.01
728 747 1.790481 GCTGGACGCGAATAAAAGCAC 60.790 52.381 15.93 0.00 0.00 4.40
729 748 0.446222 GCTGGACGCGAATAAAAGCA 59.554 50.000 15.93 0.00 0.00 3.91
730 749 0.727398 AGCTGGACGCGAATAAAAGC 59.273 50.000 15.93 12.68 45.59 3.51
731 750 1.732259 ACAGCTGGACGCGAATAAAAG 59.268 47.619 19.93 2.20 45.59 2.27
732 751 1.803334 ACAGCTGGACGCGAATAAAA 58.197 45.000 19.93 0.00 45.59 1.52
733 752 1.463056 CAACAGCTGGACGCGAATAAA 59.537 47.619 19.93 0.00 45.59 1.40
734 753 1.075542 CAACAGCTGGACGCGAATAA 58.924 50.000 19.93 0.00 45.59 1.40
735 754 1.358725 GCAACAGCTGGACGCGAATA 61.359 55.000 19.93 0.00 45.59 1.75
736 755 2.680913 GCAACAGCTGGACGCGAAT 61.681 57.895 19.93 0.00 45.59 3.34
737 756 2.428960 TAGCAACAGCTGGACGCGAA 62.429 55.000 19.93 8.24 45.59 4.70
738 757 2.225791 ATAGCAACAGCTGGACGCGA 62.226 55.000 19.93 13.52 45.59 5.87
739 758 1.756375 GATAGCAACAGCTGGACGCG 61.756 60.000 19.93 3.53 45.59 6.01
740 759 1.756375 CGATAGCAACAGCTGGACGC 61.756 60.000 19.93 16.72 39.39 5.19
741 760 0.179137 TCGATAGCAACAGCTGGACG 60.179 55.000 19.93 11.90 39.39 4.79
742 761 1.281899 GTCGATAGCAACAGCTGGAC 58.718 55.000 19.93 9.11 39.39 4.02
743 762 0.175760 GGTCGATAGCAACAGCTGGA 59.824 55.000 19.93 0.00 39.39 3.86
744 763 1.148157 CGGTCGATAGCAACAGCTGG 61.148 60.000 19.93 1.57 39.39 4.85
745 764 0.458543 ACGGTCGATAGCAACAGCTG 60.459 55.000 13.48 13.48 39.39 4.24
746 765 0.179134 GACGGTCGATAGCAACAGCT 60.179 55.000 0.00 0.00 42.33 4.24
747 766 1.146358 GGACGGTCGATAGCAACAGC 61.146 60.000 1.43 0.00 0.00 4.40
748 767 0.866061 CGGACGGTCGATAGCAACAG 60.866 60.000 1.43 0.00 0.00 3.16
749 768 1.138036 CGGACGGTCGATAGCAACA 59.862 57.895 1.43 0.00 0.00 3.33
750 769 1.588139 CCGGACGGTCGATAGCAAC 60.588 63.158 0.00 0.00 0.00 4.17
751 770 2.802792 CCGGACGGTCGATAGCAA 59.197 61.111 0.00 0.00 0.00 3.91
761 780 1.515519 CACGTACATGACCGGACGG 60.516 63.158 9.46 9.56 39.57 4.79
762 781 2.156446 GCACGTACATGACCGGACG 61.156 63.158 9.46 9.38 41.02 4.79
763 782 1.076533 CAGCACGTACATGACCGGAC 61.077 60.000 9.46 1.07 0.00 4.79
764 783 1.214325 CAGCACGTACATGACCGGA 59.786 57.895 9.46 0.00 0.00 5.14
765 784 2.452813 GCAGCACGTACATGACCGG 61.453 63.158 0.00 0.00 0.00 5.28
766 785 1.413767 GAGCAGCACGTACATGACCG 61.414 60.000 0.00 3.21 0.00 4.79
767 786 1.084370 GGAGCAGCACGTACATGACC 61.084 60.000 0.00 0.00 0.00 4.02
768 787 1.413767 CGGAGCAGCACGTACATGAC 61.414 60.000 0.00 0.00 0.00 3.06
769 788 1.153842 CGGAGCAGCACGTACATGA 60.154 57.895 0.00 0.00 0.00 3.07
770 789 2.167219 CCGGAGCAGCACGTACATG 61.167 63.158 0.00 0.00 0.00 3.21
771 790 2.184322 CCGGAGCAGCACGTACAT 59.816 61.111 0.00 0.00 0.00 2.29
772 791 4.735132 GCCGGAGCAGCACGTACA 62.735 66.667 5.05 0.00 39.53 2.90
807 826 3.500343 GCCTTACCAAATGATAGCCCAT 58.500 45.455 0.00 0.00 0.00 4.00
813 832 4.447616 CCTCATGGGCCTTACCAAATGATA 60.448 45.833 4.53 0.00 45.13 2.15
857 876 4.752101 CCTTTGGACTGTACTGAGTCTTTG 59.248 45.833 11.83 2.92 41.90 2.77
862 881 3.574826 GTCTCCTTTGGACTGTACTGAGT 59.425 47.826 6.77 0.00 0.00 3.41
879 898 3.899726 TCTATGAGTGGTACTGGTCTCC 58.100 50.000 0.00 0.00 0.00 3.71
880 899 5.916661 TTTCTATGAGTGGTACTGGTCTC 57.083 43.478 0.00 0.00 0.00 3.36
970 996 2.540769 CGAGCTTTTTCCACGAGCAAAA 60.541 45.455 0.00 0.00 38.85 2.44
1077 1107 0.914902 GAAGGGTGGAGGGGCTTACT 60.915 60.000 0.00 0.00 0.00 2.24
1119 1149 1.394917 CCTCCGAAGCAACAGAAATCG 59.605 52.381 0.00 0.00 0.00 3.34
1166 1196 3.244284 ACGCCCACATGACTAGTAAACAA 60.244 43.478 0.00 0.00 0.00 2.83
1196 1226 1.129251 CAGCACGCACCTGTAAGAATG 59.871 52.381 0.00 0.00 34.07 2.67
1271 1302 3.623060 AGCCACGATACTATGCAAACTTG 59.377 43.478 0.00 0.00 0.00 3.16
1300 1331 4.291540 ACGCAGCATAATTACAACATGG 57.708 40.909 0.00 0.00 0.00 3.66
1309 1340 4.199310 AGATACCACAACGCAGCATAATT 58.801 39.130 0.00 0.00 0.00 1.40
1327 1358 9.214957 CATGTATAAAATCGCCAAACCTAGATA 57.785 33.333 0.00 0.00 0.00 1.98
1330 1361 7.490962 TCATGTATAAAATCGCCAAACCTAG 57.509 36.000 0.00 0.00 0.00 3.02
1336 1367 7.106439 ACCAAATCATGTATAAAATCGCCAA 57.894 32.000 0.00 0.00 0.00 4.52
1361 1392 6.163135 ACTTAGATATCTTCACTTTCCCCG 57.837 41.667 11.25 0.00 0.00 5.73
1403 1434 1.048724 TCAGGCCCCTAACTGATCCG 61.049 60.000 0.00 0.00 38.71 4.18
1636 1670 8.902540 ACAAAAGATGTGTGTTAGATGTCTAA 57.097 30.769 0.00 0.00 41.93 2.10
1659 1693 8.792633 GCCATATTAAACAGGATATTAAGCACA 58.207 33.333 0.00 0.00 0.00 4.57
1665 1699 7.165485 ACGCAGCCATATTAAACAGGATATTA 58.835 34.615 0.00 0.00 0.00 0.98
1675 1709 7.171508 CAGAGAGAAATACGCAGCCATATTAAA 59.828 37.037 0.00 0.00 0.00 1.52
1692 1726 7.918076 ACAATTACTCCATAACCAGAGAGAAA 58.082 34.615 0.00 0.00 34.13 2.52
1760 1794 6.426646 AGCACCTTTGAGGGATTAGTATAG 57.573 41.667 0.00 0.00 40.58 1.31
1771 1805 4.053295 CAATCAAACAAGCACCTTTGAGG 58.947 43.478 8.20 0.00 39.22 3.86
1774 1808 2.545106 GGCAATCAAACAAGCACCTTTG 59.455 45.455 0.00 0.00 0.00 2.77
1821 1855 5.121454 GCCACAGAATATGCATCTAACTAGC 59.879 44.000 0.19 0.00 0.00 3.42
1981 2015 1.213182 ACAGAGACTATGCCGAGGAGA 59.787 52.381 0.00 0.00 0.00 3.71
2076 2110 2.105477 GCCATATCAGACCATGGTCAGT 59.895 50.000 39.38 27.60 46.76 3.41
2080 2114 2.130193 AGTGCCATATCAGACCATGGT 58.870 47.619 19.89 19.89 43.14 3.55
2101 2135 7.007723 ACAAACCATCCCAAAGTTACTCAATA 58.992 34.615 0.00 0.00 0.00 1.90
2114 2148 3.863086 ACCCAAAATACAAACCATCCCA 58.137 40.909 0.00 0.00 0.00 4.37
2186 2220 2.178474 AACACGGTACATAGTACGCG 57.822 50.000 3.53 3.53 0.00 6.01
2221 2407 6.985188 TGCTCGAAAGAAGTAGCAAATTAT 57.015 33.333 0.00 0.00 41.32 1.28
2336 2522 6.870965 CCTTGATAAGTGTACTGGATATGCTC 59.129 42.308 0.00 0.00 0.00 4.26
2445 2631 9.155975 CATAAGCAGTAGTGAACAGAATTAGTT 57.844 33.333 0.42 0.00 0.00 2.24
2447 2633 8.709386 ACATAAGCAGTAGTGAACAGAATTAG 57.291 34.615 0.42 0.00 0.00 1.73
2686 2872 5.910723 GTGTTCACGTAAATGGGTAAAGTTG 59.089 40.000 0.00 0.00 0.00 3.16
2725 2911 9.273137 ACCATAAAAATACATCCCAAAATACCA 57.727 29.630 0.00 0.00 0.00 3.25
2726 2912 9.758651 GACCATAAAAATACATCCCAAAATACC 57.241 33.333 0.00 0.00 0.00 2.73
2729 2915 9.045745 AGTGACCATAAAAATACATCCCAAAAT 57.954 29.630 0.00 0.00 0.00 1.82
2730 2916 8.310382 CAGTGACCATAAAAATACATCCCAAAA 58.690 33.333 0.00 0.00 0.00 2.44
2747 2933 6.859112 ATTGAGTAGTAAGACAGTGACCAT 57.141 37.500 0.00 0.00 0.00 3.55
2852 3038 6.688385 CCGCAATATATTTGGATATTTCTGCG 59.312 38.462 11.21 11.21 42.04 5.18
2952 3140 1.271926 GGTACAGCCCACAGGAACAAT 60.272 52.381 0.00 0.00 33.47 2.71
2972 3160 6.882656 TCTTTGATTCTAGAAGAGATGGTGG 58.117 40.000 11.53 0.00 32.88 4.61
3004 3192 8.677300 GTTGGCAAGAAACTCAAATCTATATGA 58.323 33.333 0.00 0.00 0.00 2.15
3085 3273 0.101219 GACATCTTTGAATGGGCGGC 59.899 55.000 0.00 0.00 0.00 6.53
3086 3274 1.462616 TGACATCTTTGAATGGGCGG 58.537 50.000 0.00 0.00 0.00 6.13
3087 3275 3.788333 AATGACATCTTTGAATGGGCG 57.212 42.857 0.00 0.00 0.00 6.13
3217 3405 6.817641 TGAGTTAGTGTCGAAAGGTGTAAAAA 59.182 34.615 0.00 0.00 0.00 1.94
3401 3598 7.762615 CCAAAATCAACTACATTCTGCATCAAT 59.237 33.333 0.00 0.00 0.00 2.57
3416 3613 3.119849 GCAGCGTCATACCAAAATCAACT 60.120 43.478 0.00 0.00 0.00 3.16
3480 3677 8.946085 CAAAATATTACTTACAGAAGGTGCAGA 58.054 33.333 0.00 0.00 36.95 4.26
3680 3963 9.850628 TGCACTTTAGTAGTACTAACAATAGTG 57.149 33.333 28.79 28.79 42.70 2.74
3716 3999 9.376075 TCAGTGATTTATCAATTCTCTGAAGAC 57.624 33.333 10.66 0.00 38.75 3.01
3905 4189 3.805108 GCTCCATCTGACTTATCCGCAAT 60.805 47.826 0.00 0.00 0.00 3.56
3934 4218 1.120795 CCCCTGCAGCCTTTTTGGAA 61.121 55.000 8.66 0.00 38.35 3.53
4015 4299 2.036604 TCTTCACAGCACGATGTACCAA 59.963 45.455 0.00 0.00 0.00 3.67
4064 4348 6.238842 CCATGCATTACTAAGACCAGAAATGG 60.239 42.308 0.00 0.00 0.00 3.16
4110 4394 6.095860 GGGCATGATATAGCAATAGCATCAAA 59.904 38.462 13.12 0.00 41.60 2.69
4190 4475 1.398692 TGGTCAACAAAGGGTCAAGC 58.601 50.000 0.00 0.00 0.00 4.01
4248 4533 5.376756 AAATATTGGCTGCCCATGAAAAT 57.623 34.783 17.53 10.36 41.78 1.82
4274 4559 4.532834 TCTGGGTCTTGCTTGTTTAGTTT 58.467 39.130 0.00 0.00 0.00 2.66
4334 4619 2.442413 GGTATGCTTAGTTTGGTGCCA 58.558 47.619 0.00 0.00 0.00 4.92
4348 4633 4.054780 TGAATCAGTACGAAGGGTATGC 57.945 45.455 0.00 0.00 32.74 3.14
4361 4646 4.005650 CACAAGTGGCTACATGAATCAGT 58.994 43.478 12.62 0.00 30.44 3.41
4451 4737 4.976116 AGTTCAAAACTGCAACGCTTATTC 59.024 37.500 0.00 0.00 41.01 1.75
4458 4744 7.352739 ACTAAGATTAGTTCAAAACTGCAACG 58.647 34.615 2.65 0.00 40.96 4.10
4477 4763 4.439057 ACTGTCGCAGTTTTGAACTAAGA 58.561 39.130 6.67 0.00 42.59 2.10
4498 4784 6.184789 TGTACTCCCTCCAATCCAAAATAAC 58.815 40.000 0.00 0.00 0.00 1.89
4505 4791 2.915869 AGTTGTACTCCCTCCAATCCA 58.084 47.619 0.00 0.00 0.00 3.41
4510 4796 2.173782 TGCAAAAGTTGTACTCCCTCCA 59.826 45.455 0.00 0.00 0.00 3.86
4562 4848 3.810310 TGAAAAATCAACACCACCACC 57.190 42.857 0.00 0.00 0.00 4.61
4565 4867 5.584251 ACAAACATGAAAAATCAACACCACC 59.416 36.000 0.00 0.00 0.00 4.61
4576 4878 7.323420 TGACAATGGTGTACAAACATGAAAAA 58.677 30.769 13.29 0.09 38.41 1.94
4773 5078 1.478526 TTCTCTGCAGCTGCCTCTGT 61.479 55.000 34.64 0.00 41.18 3.41
4774 5079 0.321387 TTTCTCTGCAGCTGCCTCTG 60.321 55.000 34.64 21.24 41.18 3.35
4775 5080 0.036199 CTTTCTCTGCAGCTGCCTCT 60.036 55.000 34.64 0.00 41.18 3.69
4903 5208 3.639561 ACAGGTGTTGGGTGGAAATTTAC 59.360 43.478 0.00 0.00 0.00 2.01
5086 5391 3.004002 TCAAGTTCATTGCTGCAGTTGAG 59.996 43.478 16.64 3.83 34.41 3.02
5092 5397 4.794278 ATCATTCAAGTTCATTGCTGCA 57.206 36.364 0.00 0.00 38.89 4.41
5206 5511 1.203100 AGCTTCCCAGGCTTCACATTT 60.203 47.619 0.00 0.00 36.56 2.32
5381 5686 1.603802 GAGTTAGCAGTGCACAGCAAA 59.396 47.619 32.13 18.97 41.47 3.68
5538 5847 8.567104 TCACATCATAAATTTATCATTGGTCCG 58.433 33.333 7.76 0.00 0.00 4.79
5718 6029 1.004745 GGAGGAATCAAAGGCTCCACA 59.995 52.381 0.00 0.00 0.00 4.17
5768 6079 7.100458 ACATATGATTCTTACCCAGCAAAAC 57.900 36.000 10.38 0.00 0.00 2.43
5801 6112 9.836076 GACCCCTTATAAAATGTATAAATTCGC 57.164 33.333 0.00 0.00 0.00 4.70
5879 6190 9.790344 ATAGCTATGAATGCAGATAAGAAAACT 57.210 29.630 5.15 0.00 0.00 2.66
5893 6204 6.577103 ACCGGATATGTCATAGCTATGAATG 58.423 40.000 32.72 18.24 43.65 2.67
5909 6220 6.055588 GCATACTAAATGGCATACCGGATAT 58.944 40.000 9.46 0.00 39.70 1.63
5914 6225 4.065088 ACTGCATACTAAATGGCATACCG 58.935 43.478 0.00 0.00 39.70 4.02
5944 6255 5.185454 CAGCTTACATATCAACCACCAGAA 58.815 41.667 0.00 0.00 0.00 3.02
5997 6308 3.209410 CAGGTAGCATGATCCTTTGGTC 58.791 50.000 0.00 0.00 0.00 4.02
6058 6370 4.025401 GTTTCGCAGGTGGCCACG 62.025 66.667 29.08 18.18 40.31 4.94
6099 6411 6.074142 GGAGACAATTGAGCAAAATTTGACAC 60.074 38.462 13.59 0.89 0.00 3.67
6269 6757 6.974622 GCGAGATAACATCAAAATTGACCATT 59.025 34.615 0.00 0.00 40.49 3.16
6311 6799 3.640498 TGAATGGCCAACTTTTGATCACA 59.360 39.130 10.96 0.00 0.00 3.58
6321 6809 2.154567 ATCATGCTGAATGGCCAACT 57.845 45.000 10.96 0.00 36.86 3.16
6607 7098 5.697633 ACCAATGTTTGAAATCAGCATGTTC 59.302 36.000 0.00 0.00 37.40 3.18
6668 7159 7.129457 TGGCAACATTTAATATGGGCATTAA 57.871 32.000 13.18 0.00 46.17 1.40
6689 7180 5.643777 ACTGACAACTCTGTTAACATATGGC 59.356 40.000 9.13 8.59 35.30 4.40
6775 7267 3.966979 TGCACAACAATATCATCAGGGT 58.033 40.909 0.00 0.00 0.00 4.34
6789 7281 1.461127 GTCGATCACCTCTTGCACAAC 59.539 52.381 0.00 0.00 0.00 3.32
6793 7285 1.215382 CGGTCGATCACCTCTTGCA 59.785 57.895 11.12 0.00 44.21 4.08
6798 7290 1.226717 GCACTCGGTCGATCACCTC 60.227 63.158 11.12 0.00 44.21 3.85
6807 7299 1.373497 CAGGACTGTGCACTCGGTC 60.373 63.158 19.41 20.53 41.44 4.79
6819 7311 1.002888 CCATTCTCAGCACACAGGACT 59.997 52.381 0.00 0.00 0.00 3.85
6906 7402 9.844790 GCATTGCACAATTATAGAGCAATAATA 57.155 29.630 10.17 0.00 46.50 0.98
6907 7403 7.816031 GGCATTGCACAATTATAGAGCAATAAT 59.184 33.333 11.39 0.00 46.50 1.28
6908 7404 7.147312 GGCATTGCACAATTATAGAGCAATAA 58.853 34.615 11.39 0.00 46.50 1.40
6909 7405 6.264970 TGGCATTGCACAATTATAGAGCAATA 59.735 34.615 11.39 0.00 46.50 1.90
6911 7407 4.401837 TGGCATTGCACAATTATAGAGCAA 59.598 37.500 11.39 0.00 44.35 3.91
6912 7408 3.952967 TGGCATTGCACAATTATAGAGCA 59.047 39.130 11.39 0.00 0.00 4.26
6913 7409 4.572985 TGGCATTGCACAATTATAGAGC 57.427 40.909 11.39 0.00 0.00 4.09
6914 7410 7.121611 TGGATATGGCATTGCACAATTATAGAG 59.878 37.037 4.78 0.00 0.00 2.43
6915 7411 6.947158 TGGATATGGCATTGCACAATTATAGA 59.053 34.615 4.78 0.00 0.00 1.98
6916 7412 7.031372 GTGGATATGGCATTGCACAATTATAG 58.969 38.462 20.56 0.00 34.68 1.31
6917 7413 6.492772 TGTGGATATGGCATTGCACAATTATA 59.507 34.615 23.58 8.84 40.56 0.98
6918 7414 5.304871 TGTGGATATGGCATTGCACAATTAT 59.695 36.000 23.58 4.43 40.56 1.28
6919 7415 4.648307 TGTGGATATGGCATTGCACAATTA 59.352 37.500 23.58 9.58 40.56 1.40
6932 7428 6.874134 GCTACAGGTAATTACTGTGGATATGG 59.126 42.308 23.09 8.44 46.51 2.74
7023 7557 1.339824 CCTCATGCAAACTCTCCAGCT 60.340 52.381 0.00 0.00 0.00 4.24
7071 7609 1.074566 AGGAAGAAGTCTTGGGCCAAG 59.925 52.381 35.44 35.44 42.25 3.61
7148 7686 4.381292 GGGCAAGTTTTGATCAGATTCCAG 60.381 45.833 0.00 0.00 0.00 3.86
7231 7769 4.568760 CAGCTTCTAGGCTAAACTTGCTAC 59.431 45.833 0.00 0.00 41.00 3.58
7235 7773 5.645497 ACATTCAGCTTCTAGGCTAAACTTG 59.355 40.000 0.00 0.00 41.00 3.16
7265 7803 4.198530 GAGCTACTACTCCGGAGTACTTT 58.801 47.826 35.34 24.69 42.54 2.66
7268 7806 3.132925 CTGAGCTACTACTCCGGAGTAC 58.867 54.545 35.34 26.02 42.54 2.73
7269 7807 2.770802 ACTGAGCTACTACTCCGGAGTA 59.229 50.000 35.93 35.93 42.54 2.59
7270 7808 1.560611 ACTGAGCTACTACTCCGGAGT 59.439 52.381 37.59 37.59 45.02 3.85
7271 7809 2.335316 ACTGAGCTACTACTCCGGAG 57.665 55.000 30.11 30.11 35.72 4.63
7272 7810 2.366533 CAACTGAGCTACTACTCCGGA 58.633 52.381 2.93 2.93 35.72 5.14
7273 7811 1.202313 GCAACTGAGCTACTACTCCGG 60.202 57.143 0.00 0.00 35.72 5.14
7274 7812 1.532090 CGCAACTGAGCTACTACTCCG 60.532 57.143 0.00 0.00 35.72 4.63
7275 7813 1.202313 CCGCAACTGAGCTACTACTCC 60.202 57.143 0.00 0.00 35.72 3.85
7276 7814 1.473278 ACCGCAACTGAGCTACTACTC 59.527 52.381 0.00 0.00 37.19 2.59
7277 7815 1.473278 GACCGCAACTGAGCTACTACT 59.527 52.381 0.00 0.00 0.00 2.57
7278 7816 1.473278 AGACCGCAACTGAGCTACTAC 59.527 52.381 0.00 0.00 0.00 2.73
7279 7817 1.835494 AGACCGCAACTGAGCTACTA 58.165 50.000 0.00 0.00 0.00 1.82
7295 7833 0.671472 GCTTGGGCATGGCAAAAGAC 60.671 55.000 27.64 18.45 38.54 3.01
7308 7846 1.252904 CCTGGTGATGGTTGCTTGGG 61.253 60.000 0.00 0.00 0.00 4.12
7320 7858 0.403655 TACCAAAGCATGCCTGGTGA 59.596 50.000 35.69 23.19 43.36 4.02
7324 7862 1.820519 ACACATACCAAAGCATGCCTG 59.179 47.619 15.66 12.26 0.00 4.85
7343 7882 4.305989 TGCTTGATGACACCAAAAGAAC 57.694 40.909 0.00 0.00 0.00 3.01
7410 7949 3.664025 TTCTCCCAGACATGGCGCG 62.664 63.158 0.00 0.00 46.19 6.86
7417 7956 7.279981 CGTATGTGAAATATTTTCTCCCAGACA 59.720 37.037 1.43 0.00 0.00 3.41
7433 7972 5.864261 CACATGGAAGCACCGTATGTGAAA 61.864 45.833 19.16 0.00 46.80 2.69
7466 8005 3.394719 TGCTATTTGTGTGTGTTCGCTA 58.605 40.909 0.00 0.00 0.00 4.26
7467 8006 2.217750 TGCTATTTGTGTGTGTTCGCT 58.782 42.857 0.00 0.00 0.00 4.93
7474 8013 3.149196 CCAGAGGTTGCTATTTGTGTGT 58.851 45.455 0.00 0.00 0.00 3.72
7478 8017 2.584835 TGCCAGAGGTTGCTATTTGT 57.415 45.000 0.00 0.00 0.00 2.83
7517 8056 0.036858 GGTCAGCTCCAGTTCTGGAC 60.037 60.000 16.47 13.24 33.77 4.02
7540 8082 8.379457 ACTTTAGAGTACATTTTTCAGGTCAC 57.621 34.615 0.00 0.00 33.32 3.67
7558 8100 3.321111 GGAGCGGATACCATGACTTTAGA 59.679 47.826 0.00 0.00 0.00 2.10
7561 8103 1.837439 TGGAGCGGATACCATGACTTT 59.163 47.619 0.00 0.00 0.00 2.66
7564 8113 1.134521 TGTTGGAGCGGATACCATGAC 60.135 52.381 0.00 0.00 36.02 3.06
7576 8125 1.609072 GAAGGTGGAGTTTGTTGGAGC 59.391 52.381 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.