Multiple sequence alignment - TraesCS3B01G375900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G375900 chr3B 100.000 6703 0 0 1 6703 591372888 591366186 0.000000e+00 12379.0
1 TraesCS3B01G375900 chr3A 93.425 6312 270 56 20 6266 593348148 593341917 0.000000e+00 9223.0
2 TraesCS3B01G375900 chr3A 82.812 64 11 0 5144 5207 719641059 719640996 2.610000e-04 58.4
3 TraesCS3B01G375900 chr3D 91.507 3026 182 29 54 3058 449745583 449742612 0.000000e+00 4095.0
4 TraesCS3B01G375900 chr3D 91.371 1634 93 25 3696 5309 449742047 449740442 0.000000e+00 2193.0
5 TraesCS3B01G375900 chr3D 94.375 960 47 5 5308 6264 449739953 449738998 0.000000e+00 1467.0
6 TraesCS3B01G375900 chr3D 87.567 563 30 14 3093 3620 449742611 449742054 3.430000e-172 616.0
7 TraesCS3B01G375900 chr3D 95.395 152 7 0 6550 6701 449738690 449738539 6.720000e-60 243.0
8 TraesCS3B01G375900 chr3D 86.228 167 13 1 5143 5309 449740183 449740027 8.940000e-39 172.0
9 TraesCS3B01G375900 chr3D 93.069 101 7 0 5308 5408 449740283 449740183 1.510000e-31 148.0
10 TraesCS3B01G375900 chr7B 99.541 218 1 0 6266 6483 657689970 657689753 1.350000e-106 398.0
11 TraesCS3B01G375900 chr5B 98.624 218 3 0 6266 6483 6371041 6370824 2.930000e-103 387.0
12 TraesCS3B01G375900 chr5B 95.434 219 10 0 6266 6484 528889361 528889143 3.850000e-92 350.0
13 TraesCS3B01G375900 chr5B 94.977 219 11 0 6266 6484 114133078 114132860 1.790000e-90 344.0
14 TraesCS3B01G375900 chr6B 95.872 218 9 0 6266 6483 8131961 8131744 2.970000e-93 353.0
15 TraesCS3B01G375900 chr6B 86.854 213 23 4 3011 3221 343003037 343003246 4.040000e-57 233.0
16 TraesCS3B01G375900 chr4A 95.067 223 11 0 6263 6485 736531464 736531242 1.070000e-92 351.0
17 TraesCS3B01G375900 chr4A 85.526 228 26 4 2975 3202 594659497 594659717 1.450000e-56 231.0
18 TraesCS3B01G375900 chr4A 84.649 228 28 6 2975 3202 256611855 256612075 3.150000e-53 220.0
19 TraesCS3B01G375900 chr6A 94.248 226 13 0 6258 6483 315613608 315613833 4.980000e-91 346.0
20 TraesCS3B01G375900 chr6A 87.868 272 30 2 3011 3281 297670611 297670342 3.900000e-82 316.0
21 TraesCS3B01G375900 chr6A 87.678 211 24 1 3011 3221 297670815 297670607 1.870000e-60 244.0
22 TraesCS3B01G375900 chr1D 94.248 226 13 0 6261 6486 272313603 272313828 4.980000e-91 346.0
23 TraesCS3B01G375900 chr5D 93.778 225 14 0 6265 6489 440804830 440804606 8.330000e-89 339.0
24 TraesCS3B01G375900 chr6D 87.868 272 29 3 3011 3281 218426670 218426402 3.900000e-82 316.0
25 TraesCS3B01G375900 chr1A 85.088 228 29 2 2975 3202 566931977 566931755 1.880000e-55 228.0
26 TraesCS3B01G375900 chr4B 81.784 269 46 3 2980 3248 647702324 647702589 8.750000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G375900 chr3B 591366186 591372888 6702 True 12379.000000 12379 100.000000 1 6703 1 chr3B.!!$R1 6702
1 TraesCS3B01G375900 chr3A 593341917 593348148 6231 True 9223.000000 9223 93.425000 20 6266 1 chr3A.!!$R1 6246
2 TraesCS3B01G375900 chr3D 449738539 449745583 7044 True 1276.285714 4095 91.358857 54 6701 7 chr3D.!!$R1 6647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 164 0.447801 ACGAAACATGATCTTGGCGC 59.552 50.000 12.76 0.00 0.00 6.53 F
1434 1517 0.312102 GGGCTGAAATAATCGCTGCC 59.688 55.000 0.00 0.00 39.37 4.85 F
1546 1629 0.380378 TTTGCAGCGGTGTTTCTGTC 59.620 50.000 17.07 0.00 33.09 3.51 F
1850 1934 0.545309 AGGTGCTGTTAGAGGCCTCA 60.545 55.000 33.90 17.39 0.00 3.86 F
2198 2282 0.617935 TGGTGCTGCCTTGCTATGTA 59.382 50.000 0.00 0.00 38.35 2.29 F
2328 2412 1.220529 GCTTTGGCTTTGTTCTTGGC 58.779 50.000 0.00 0.00 35.22 4.52 F
2841 2926 1.535462 CTTTGGACTTCCGTGCGAATT 59.465 47.619 0.00 0.00 34.80 2.17 F
4463 4598 0.032952 AACTACGTCGCTTCCTTGCA 59.967 50.000 0.00 0.00 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 1982 0.108186 CACCAACCTCTGCAGCGATA 60.108 55.000 9.47 0.00 0.00 2.92 R
2322 2406 1.545582 GCCAATAGTGCAAAGCCAAGA 59.454 47.619 0.00 0.00 0.00 3.02 R
3234 3320 3.127548 CGCAAAATGCAGGAATAGAGTGT 59.872 43.478 2.99 0.00 45.36 3.55 R
3826 3956 2.290260 TGCTATGTGTGGAAACTCCCAG 60.290 50.000 0.00 0.00 36.78 4.45 R
4024 4155 1.201647 GAGCCTCGCTAGTGTTACACA 59.798 52.381 18.19 3.12 39.88 3.72 R
4260 4395 0.326595 TTGCTAAATGGCGGAGGTGA 59.673 50.000 0.00 0.00 34.52 4.02 R
4616 4759 1.204146 GAGGTGGTCTATTGGGAGCA 58.796 55.000 0.00 0.00 40.71 4.26 R
6296 6953 0.105658 TAGGGGTCGGATTCTGGGAG 60.106 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.967332 TCCTACCGTAGAACCCAAAAG 57.033 47.619 7.16 0.00 0.00 2.27
21 22 3.242011 TCCTACCGTAGAACCCAAAAGT 58.758 45.455 7.16 0.00 0.00 2.66
22 23 3.647590 TCCTACCGTAGAACCCAAAAGTT 59.352 43.478 7.16 0.00 0.00 2.66
23 24 3.749609 CCTACCGTAGAACCCAAAAGTTG 59.250 47.826 7.16 0.00 0.00 3.16
24 25 3.564053 ACCGTAGAACCCAAAAGTTGA 57.436 42.857 0.00 0.00 0.00 3.18
25 26 3.208594 ACCGTAGAACCCAAAAGTTGAC 58.791 45.455 0.00 0.00 0.00 3.18
32 33 6.783708 AGAACCCAAAAGTTGACAATACAA 57.216 33.333 0.00 0.00 0.00 2.41
38 39 9.528489 ACCCAAAAGTTGACAATACAATATACT 57.472 29.630 0.00 0.00 32.36 2.12
40 41 9.787532 CCAAAAGTTGACAATACAATATACTGG 57.212 33.333 0.00 0.00 32.36 4.00
44 45 6.159751 AGTTGACAATACAATATACTGGGGGT 59.840 38.462 0.00 0.00 32.36 4.95
46 47 5.163141 TGACAATACAATATACTGGGGGTGG 60.163 44.000 0.00 0.00 0.00 4.61
83 84 2.034221 GACACTGGGTTGGCCTCC 59.966 66.667 3.32 6.65 34.45 4.30
134 136 1.061905 ATCGATCAATCCAGGGCCCA 61.062 55.000 27.56 2.74 0.00 5.36
139 141 1.305549 CAATCCAGGGCCCAGCTTT 60.306 57.895 27.56 9.35 0.00 3.51
162 164 0.447801 ACGAAACATGATCTTGGCGC 59.552 50.000 12.76 0.00 0.00 6.53
180 182 2.359230 GCAAGCCACGAAGCTCCT 60.359 61.111 4.49 0.00 44.11 3.69
193 195 3.062466 CTCCTGTGGCGAGGTCGA 61.062 66.667 2.94 0.00 43.02 4.20
194 196 2.362503 TCCTGTGGCGAGGTCGAT 60.363 61.111 2.94 0.00 43.02 3.59
223 225 2.667473 TGTAAAACCCTAGCTCTCGC 57.333 50.000 0.00 0.00 0.00 5.03
261 263 1.585006 CAAGTGTAGGTCGACGCCT 59.415 57.895 9.92 13.94 42.43 5.52
364 366 0.666577 GACGAAACCCACCGAGACTG 60.667 60.000 0.00 0.00 0.00 3.51
365 367 2.027625 CGAAACCCACCGAGACTGC 61.028 63.158 0.00 0.00 0.00 4.40
375 379 1.156736 CCGAGACTGCCGACATTTTT 58.843 50.000 0.00 0.00 0.00 1.94
416 420 5.427157 TGGTTTTGGCCATCTCTAGTACATA 59.573 40.000 6.09 0.00 32.81 2.29
465 469 6.754193 TCCGTATCACTGCATATATGTTTCA 58.246 36.000 14.14 3.34 0.00 2.69
507 511 5.659971 ACCTACCGATAACTTTACACTCCAT 59.340 40.000 0.00 0.00 0.00 3.41
549 554 4.380841 ACACACAACTCTTCGTAACTCA 57.619 40.909 0.00 0.00 0.00 3.41
584 589 1.751351 TCGACACAAATTTGGGCACAA 59.249 42.857 20.40 0.00 34.06 3.33
596 601 5.637006 TTTGGGCACAAATCTATGTACAC 57.363 39.130 10.84 0.00 41.42 2.90
597 602 4.293662 TGGGCACAAATCTATGTACACA 57.706 40.909 0.00 0.00 27.53 3.72
598 603 4.657013 TGGGCACAAATCTATGTACACAA 58.343 39.130 0.00 0.00 27.15 3.33
599 604 5.073428 TGGGCACAAATCTATGTACACAAA 58.927 37.500 0.00 0.00 27.15 2.83
600 605 5.714333 TGGGCACAAATCTATGTACACAAAT 59.286 36.000 0.00 0.00 27.15 2.32
601 606 6.210385 TGGGCACAAATCTATGTACACAAATT 59.790 34.615 0.00 0.00 27.15 1.82
602 607 7.096551 GGGCACAAATCTATGTACACAAATTT 58.903 34.615 0.00 1.59 30.84 1.82
603 608 7.063308 GGGCACAAATCTATGTACACAAATTTG 59.937 37.037 23.65 23.65 39.07 2.32
604 609 7.063308 GGCACAAATCTATGTACACAAATTTGG 59.937 37.037 26.24 20.13 38.04 3.28
605 610 7.063308 GCACAAATCTATGTACACAAATTTGGG 59.937 37.037 26.24 24.96 39.39 4.12
606 611 7.063308 CACAAATCTATGTACACAAATTTGGGC 59.937 37.037 26.24 5.74 38.04 5.36
607 612 6.849085 AATCTATGTACACAAATTTGGGCA 57.151 33.333 20.40 11.45 34.06 5.36
608 613 5.637006 TCTATGTACACAAATTTGGGCAC 57.363 39.130 20.40 17.87 34.06 5.01
609 614 5.073428 TCTATGTACACAAATTTGGGCACA 58.927 37.500 24.93 24.93 34.06 4.57
610 615 4.679373 ATGTACACAAATTTGGGCACAA 57.321 36.364 26.11 12.77 34.06 3.33
626 631 4.588528 GGGCACAAATCCATGTACCAATAT 59.411 41.667 0.00 0.00 38.31 1.28
629 634 6.183360 GGCACAAATCCATGTACCAATATCAA 60.183 38.462 0.00 0.00 36.83 2.57
662 667 2.290071 ACAATCACCCCCTAGTTGAACG 60.290 50.000 0.00 0.00 0.00 3.95
824 869 4.374702 CACAACAGCACGCGAGCC 62.375 66.667 24.84 7.36 34.23 4.70
933 983 4.180946 CCTCCGCCGTCTCGTCTG 62.181 72.222 0.00 0.00 0.00 3.51
962 1040 4.024984 CACCCCCTCTCCTCCCCA 62.025 72.222 0.00 0.00 0.00 4.96
1023 1101 3.071206 GCCTCTCTCCTCCACGCA 61.071 66.667 0.00 0.00 0.00 5.24
1145 1223 4.003788 CCGTGCCCGACTGGACTT 62.004 66.667 0.00 0.00 37.49 3.01
1273 1351 1.227089 CCTGTCCGAGATCCTTGCG 60.227 63.158 0.00 0.00 0.00 4.85
1294 1373 2.799562 GCTGGTTTTCTGTTTCCAGTGC 60.800 50.000 10.94 0.00 46.23 4.40
1303 1382 1.304381 TTTCCAGTGCTGATGCCCC 60.304 57.895 0.02 0.00 38.71 5.80
1410 1493 3.963383 ATTTTATTTTCCTCGCGCGAT 57.037 38.095 34.86 19.99 0.00 4.58
1434 1517 0.312102 GGGCTGAAATAATCGCTGCC 59.688 55.000 0.00 0.00 39.37 4.85
1463 1546 2.223377 ACAATTTTCGCTTCGTGGAGTC 59.777 45.455 0.00 0.00 0.00 3.36
1482 1565 1.224069 CCACTGAGGATAATGCGCGG 61.224 60.000 8.83 0.00 41.22 6.46
1497 1580 1.862827 GCGCGGGTATATTCTTTTCGT 59.137 47.619 8.83 0.00 0.00 3.85
1498 1581 2.348218 GCGCGGGTATATTCTTTTCGTG 60.348 50.000 8.83 0.00 0.00 4.35
1499 1582 2.348218 CGCGGGTATATTCTTTTCGTGC 60.348 50.000 0.00 0.00 0.00 5.34
1500 1583 2.032290 GCGGGTATATTCTTTTCGTGCC 60.032 50.000 0.00 0.00 0.00 5.01
1501 1584 3.199677 CGGGTATATTCTTTTCGTGCCA 58.800 45.455 0.00 0.00 0.00 4.92
1502 1585 3.813166 CGGGTATATTCTTTTCGTGCCAT 59.187 43.478 0.00 0.00 0.00 4.40
1503 1586 4.084013 CGGGTATATTCTTTTCGTGCCATC 60.084 45.833 0.00 0.00 0.00 3.51
1504 1587 5.063880 GGGTATATTCTTTTCGTGCCATCT 58.936 41.667 0.00 0.00 0.00 2.90
1505 1588 5.531287 GGGTATATTCTTTTCGTGCCATCTT 59.469 40.000 0.00 0.00 0.00 2.40
1506 1589 6.293462 GGGTATATTCTTTTCGTGCCATCTTC 60.293 42.308 0.00 0.00 0.00 2.87
1507 1590 3.747099 ATTCTTTTCGTGCCATCTTCG 57.253 42.857 0.00 0.00 0.00 3.79
1508 1591 2.163818 TCTTTTCGTGCCATCTTCGT 57.836 45.000 0.00 0.00 0.00 3.85
1515 1598 1.228094 TGCCATCTTCGTTGTGCCA 60.228 52.632 0.00 0.00 0.00 4.92
1518 1601 1.930371 GCCATCTTCGTTGTGCCAAAC 60.930 52.381 0.00 0.00 0.00 2.93
1546 1629 0.380378 TTTGCAGCGGTGTTTCTGTC 59.620 50.000 17.07 0.00 33.09 3.51
1548 1631 0.746204 TGCAGCGGTGTTTCTGTCAA 60.746 50.000 17.07 0.00 33.09 3.18
1549 1632 0.593128 GCAGCGGTGTTTCTGTCAAT 59.407 50.000 17.07 0.00 33.09 2.57
1554 1637 2.855180 CGGTGTTTCTGTCAATGCATC 58.145 47.619 0.00 0.00 0.00 3.91
1583 1666 8.369462 GTCTTTTGACGATTTAATTGTGCTAG 57.631 34.615 2.09 0.00 39.89 3.42
1589 1673 7.837505 TGACGATTTAATTGTGCTAGAATACG 58.162 34.615 2.09 0.00 0.00 3.06
1597 1681 9.990360 TTAATTGTGCTAGAATACGATATTCCA 57.010 29.630 11.62 1.91 0.00 3.53
1615 1699 2.571202 TCCATGGCTGAACTGTGATGTA 59.429 45.455 6.96 0.00 0.00 2.29
1625 1709 6.473455 GCTGAACTGTGATGTAAAATTATGCC 59.527 38.462 0.00 0.00 0.00 4.40
1706 1790 5.707242 AGGAAAAGGAAACGGAAAAGATC 57.293 39.130 0.00 0.00 0.00 2.75
1850 1934 0.545309 AGGTGCTGTTAGAGGCCTCA 60.545 55.000 33.90 17.39 0.00 3.86
1898 1982 1.963515 GCACAAAAGGACCTGACCATT 59.036 47.619 0.00 0.00 0.00 3.16
1967 2051 3.198635 CAGCTAAGAACTCCCCAGATTCA 59.801 47.826 0.00 0.00 0.00 2.57
2059 2143 3.840890 TGTCGGCATTTCATTTGGTAC 57.159 42.857 0.00 0.00 0.00 3.34
2138 2222 4.816385 AGTTGACGAACATGTGACTCATTT 59.184 37.500 0.00 0.00 34.09 2.32
2147 2231 7.361201 CGAACATGTGACTCATTTAGGAAATGT 60.361 37.037 0.00 0.00 46.46 2.71
2167 2251 9.552114 GAAATGTCTTTGTTAGATCATCAGTTG 57.448 33.333 0.00 0.00 34.79 3.16
2177 2261 4.892433 AGATCATCAGTTGTATAGGCAGC 58.108 43.478 0.00 0.00 0.00 5.25
2198 2282 0.617935 TGGTGCTGCCTTGCTATGTA 59.382 50.000 0.00 0.00 38.35 2.29
2203 2287 1.408822 GCTGCCTTGCTATGTAAGGGT 60.409 52.381 14.43 0.00 43.86 4.34
2221 2305 8.682710 TGTAAGGGTTGCAATTGAATAGTATTC 58.317 33.333 14.86 14.86 0.00 1.75
2224 2308 8.995027 AGGGTTGCAATTGAATAGTATTCATA 57.005 30.769 23.01 15.19 0.00 2.15
2316 2400 1.274596 CATCTGCAATTCGCTTTGGC 58.725 50.000 0.00 0.00 43.06 4.52
2322 2406 1.866601 GCAATTCGCTTTGGCTTTGTT 59.133 42.857 0.00 0.00 37.77 2.83
2328 2412 1.220529 GCTTTGGCTTTGTTCTTGGC 58.779 50.000 0.00 0.00 35.22 4.52
2337 2421 3.490761 GCTTTGTTCTTGGCTTTGCACTA 60.491 43.478 0.00 0.00 0.00 2.74
2501 2585 2.734755 AGTGGCATTGGCATAGCTAA 57.265 45.000 16.56 0.00 43.71 3.09
2833 2918 3.057596 TGCAAAATAGCTTTGGACTTCCG 60.058 43.478 0.00 0.00 44.03 4.30
2841 2926 1.535462 CTTTGGACTTCCGTGCGAATT 59.465 47.619 0.00 0.00 34.80 2.17
2962 3048 6.604171 TCCAGTATTCCAGCATGATATTGTT 58.396 36.000 0.00 0.00 39.69 2.83
2987 3073 6.115446 TGCAACTATAACTCCTTTGATCCAG 58.885 40.000 0.00 0.00 0.00 3.86
3183 3269 4.710423 TTCTGTGCTATCAGACACTCTC 57.290 45.455 6.38 0.00 43.01 3.20
3185 3271 2.757314 CTGTGCTATCAGACACTCTCCA 59.243 50.000 0.00 0.00 37.61 3.86
3567 3693 4.634012 AGTGTAAAGAAGGCCACATGTA 57.366 40.909 5.01 0.00 0.00 2.29
3568 3694 4.980573 AGTGTAAAGAAGGCCACATGTAA 58.019 39.130 5.01 0.00 0.00 2.41
3569 3695 4.760204 AGTGTAAAGAAGGCCACATGTAAC 59.240 41.667 5.01 0.00 0.00 2.50
3571 3697 5.240844 GTGTAAAGAAGGCCACATGTAACTT 59.759 40.000 5.01 3.15 0.00 2.66
3572 3698 5.830991 TGTAAAGAAGGCCACATGTAACTTT 59.169 36.000 5.01 7.08 0.00 2.66
3573 3699 5.869649 AAAGAAGGCCACATGTAACTTTT 57.130 34.783 5.01 0.00 0.00 2.27
3574 3700 5.453567 AAGAAGGCCACATGTAACTTTTC 57.546 39.130 5.01 0.00 0.00 2.29
3854 3984 3.415457 TTCCACACATAGCACACATCA 57.585 42.857 0.00 0.00 0.00 3.07
4037 4168 7.170998 ACTTGTATTTGACTGTGTAACACTAGC 59.829 37.037 0.00 0.00 45.67 3.42
4094 4227 7.816995 AGTCTCAAGATGAAGTTATCAGTTGAC 59.183 37.037 0.00 0.00 42.53 3.18
4160 4295 4.698201 TCCAACATACTTGACTTGTGGA 57.302 40.909 0.00 0.00 0.00 4.02
4211 4346 5.496556 TCAAGGACTTGTCAGTTTTCTTCA 58.503 37.500 11.44 0.00 41.16 3.02
4271 4406 0.178068 GATAGCTTTCACCTCCGCCA 59.822 55.000 0.00 0.00 0.00 5.69
4461 4596 2.060326 TGAACTACGTCGCTTCCTTG 57.940 50.000 0.00 0.00 0.00 3.61
4462 4597 0.714439 GAACTACGTCGCTTCCTTGC 59.286 55.000 0.00 0.00 0.00 4.01
4463 4598 0.032952 AACTACGTCGCTTCCTTGCA 59.967 50.000 0.00 0.00 0.00 4.08
4464 4599 0.246635 ACTACGTCGCTTCCTTGCAT 59.753 50.000 0.00 0.00 0.00 3.96
4465 4600 0.647410 CTACGTCGCTTCCTTGCATG 59.353 55.000 0.00 0.00 0.00 4.06
4466 4601 0.037697 TACGTCGCTTCCTTGCATGT 60.038 50.000 0.00 0.00 0.00 3.21
4479 4614 6.061022 TCCTTGCATGTTTATGTTCCTCTA 57.939 37.500 0.00 0.00 36.65 2.43
4487 4622 4.041075 TGTTTATGTTCCTCTACCTGTGCA 59.959 41.667 0.00 0.00 0.00 4.57
4535 4670 2.162681 GCTTGTTCCTGTGGCTACAAT 58.837 47.619 3.88 0.00 36.14 2.71
4550 4685 4.113354 GCTACAATGGCTCTACACAGTAC 58.887 47.826 0.00 0.00 0.00 2.73
4615 4758 1.028905 TTCAACCTTTCTGGCAACCG 58.971 50.000 0.00 0.00 40.22 4.44
4616 4759 0.106918 TCAACCTTTCTGGCAACCGT 60.107 50.000 0.00 0.00 40.22 4.83
4617 4760 0.030638 CAACCTTTCTGGCAACCGTG 59.969 55.000 0.00 0.00 40.22 4.94
4676 4821 5.794894 CCACTGTACCACATAGTTCTTTCT 58.205 41.667 0.00 0.00 0.00 2.52
4714 4859 2.046023 TGCTGCAATCCCCTGACG 60.046 61.111 0.00 0.00 0.00 4.35
5031 5176 7.920160 TCACATAGTTGATGTCAAGCATTAA 57.080 32.000 0.00 0.00 46.33 1.40
5035 5182 8.742777 ACATAGTTGATGTCAAGCATTAAACAT 58.257 29.630 0.00 0.00 46.33 2.71
5047 5194 7.756272 TCAAGCATTAAACATATTGCTGTCAAG 59.244 33.333 0.00 0.00 44.26 3.02
5076 5223 1.134189 GTTGGACATGTACTAGCCCCC 60.134 57.143 10.05 0.00 0.00 5.40
5208 5781 0.392998 AATGTGACACCCTGCGGATC 60.393 55.000 2.45 0.00 0.00 3.36
5242 5815 1.408969 GAGCTCCTCTAGTTCCCCAG 58.591 60.000 0.87 0.00 29.55 4.45
5251 5824 0.891904 TAGTTCCCCAGTTTTGGCGC 60.892 55.000 0.00 0.00 43.58 6.53
5262 5835 1.792367 GTTTTGGCGCTTTGGACATTC 59.208 47.619 7.64 0.00 0.00 2.67
5277 5850 3.364366 GGACATTCACACGCTCTTCAAAG 60.364 47.826 0.00 0.00 0.00 2.77
5461 6110 2.348605 TTTGTGAACTTGCAGGCGGC 62.349 55.000 0.00 0.00 45.13 6.53
5505 6156 6.783892 TTTTCAGCAATTAAGTTGGCAATC 57.216 33.333 1.92 0.00 38.29 2.67
5888 6539 6.660521 ACAACACACTTGGATGAATCATATGT 59.339 34.615 1.90 0.00 0.00 2.29
5994 6645 3.300388 TCTGTGGTGTCTCTGAACTCTT 58.700 45.455 0.00 0.00 0.00 2.85
6001 6652 4.039366 GGTGTCTCTGAACTCTTAAGTGGT 59.961 45.833 9.23 1.93 35.36 4.16
6042 6693 0.035317 TCACAAGACTTGCCTCGCAT 59.965 50.000 15.24 0.00 38.76 4.73
6063 6714 1.228124 TCGCCCCTCACCTTTGTTG 60.228 57.895 0.00 0.00 0.00 3.33
6086 6737 5.926542 TGCTTTCCTCGTGTAATATAGATGC 59.073 40.000 0.00 0.00 0.00 3.91
6087 6738 6.159988 GCTTTCCTCGTGTAATATAGATGCT 58.840 40.000 0.00 0.00 0.00 3.79
6088 6739 6.090088 GCTTTCCTCGTGTAATATAGATGCTG 59.910 42.308 0.00 0.00 0.00 4.41
6089 6740 5.060662 TCCTCGTGTAATATAGATGCTGC 57.939 43.478 0.00 0.00 0.00 5.25
6090 6741 4.082190 TCCTCGTGTAATATAGATGCTGCC 60.082 45.833 0.00 0.00 0.00 4.85
6091 6742 4.177026 CTCGTGTAATATAGATGCTGCCC 58.823 47.826 0.00 0.00 0.00 5.36
6208 6865 6.322201 ACACATTGAATATCCAGTGAAATCCC 59.678 38.462 0.00 0.00 0.00 3.85
6249 6906 1.067635 CAGTATGTTGCTGTTTGGCCC 60.068 52.381 0.00 0.00 0.00 5.80
6267 6924 1.079888 CGAGGGCAACAATTTGGGC 60.080 57.895 0.78 4.23 39.74 5.36
6270 6927 3.155750 GGCAACAATTTGGGCCCA 58.844 55.556 24.45 24.45 36.38 5.36
6271 6928 1.003476 GGCAACAATTTGGGCCCAG 60.003 57.895 26.87 16.40 36.38 4.45
6272 6929 1.754107 GCAACAATTTGGGCCCAGT 59.246 52.632 26.87 17.16 32.81 4.00
6273 6930 0.108396 GCAACAATTTGGGCCCAGTT 59.892 50.000 26.87 22.30 32.81 3.16
6274 6931 1.877680 GCAACAATTTGGGCCCAGTTC 60.878 52.381 26.87 14.66 32.81 3.01
6275 6932 1.693606 CAACAATTTGGGCCCAGTTCT 59.306 47.619 26.87 9.24 0.00 3.01
6276 6933 2.101640 ACAATTTGGGCCCAGTTCTT 57.898 45.000 26.87 14.03 0.00 2.52
6277 6934 2.407562 ACAATTTGGGCCCAGTTCTTT 58.592 42.857 26.87 12.35 0.00 2.52
6278 6935 2.777114 ACAATTTGGGCCCAGTTCTTTT 59.223 40.909 26.87 10.55 0.00 2.27
6279 6936 3.970640 ACAATTTGGGCCCAGTTCTTTTA 59.029 39.130 26.87 4.06 0.00 1.52
6280 6937 4.202315 ACAATTTGGGCCCAGTTCTTTTAC 60.202 41.667 26.87 0.00 0.00 2.01
6281 6938 2.003937 TTGGGCCCAGTTCTTTTACC 57.996 50.000 26.87 0.00 0.00 2.85
6282 6939 0.854218 TGGGCCCAGTTCTTTTACCA 59.146 50.000 24.45 0.00 0.00 3.25
6283 6940 1.203001 TGGGCCCAGTTCTTTTACCAG 60.203 52.381 24.45 0.00 0.00 4.00
6284 6941 1.074889 GGGCCCAGTTCTTTTACCAGA 59.925 52.381 19.95 0.00 0.00 3.86
6285 6942 2.490168 GGGCCCAGTTCTTTTACCAGAA 60.490 50.000 19.95 0.00 0.00 3.02
6286 6943 3.431415 GGCCCAGTTCTTTTACCAGAAT 58.569 45.455 0.00 0.00 35.23 2.40
6287 6944 3.444034 GGCCCAGTTCTTTTACCAGAATC 59.556 47.826 0.00 0.00 35.23 2.52
6288 6945 4.336280 GCCCAGTTCTTTTACCAGAATCT 58.664 43.478 0.00 0.00 35.23 2.40
6289 6946 4.156739 GCCCAGTTCTTTTACCAGAATCTG 59.843 45.833 2.68 2.68 35.23 2.90
6312 6969 1.132500 ATTCTCCCAGAATCCGACCC 58.868 55.000 0.00 0.00 40.75 4.46
6313 6970 0.981277 TTCTCCCAGAATCCGACCCC 60.981 60.000 0.00 0.00 0.00 4.95
6314 6971 1.383248 CTCCCAGAATCCGACCCCT 60.383 63.158 0.00 0.00 0.00 4.79
6315 6972 0.105658 CTCCCAGAATCCGACCCCTA 60.106 60.000 0.00 0.00 0.00 3.53
6316 6973 0.398098 TCCCAGAATCCGACCCCTAC 60.398 60.000 0.00 0.00 0.00 3.18
6317 6974 1.408453 CCCAGAATCCGACCCCTACC 61.408 65.000 0.00 0.00 0.00 3.18
6318 6975 1.408453 CCAGAATCCGACCCCTACCC 61.408 65.000 0.00 0.00 0.00 3.69
6319 6976 0.689745 CAGAATCCGACCCCTACCCA 60.690 60.000 0.00 0.00 0.00 4.51
6320 6977 0.398664 AGAATCCGACCCCTACCCAG 60.399 60.000 0.00 0.00 0.00 4.45
6321 6978 2.041206 GAATCCGACCCCTACCCAGC 62.041 65.000 0.00 0.00 0.00 4.85
6322 6979 2.547123 AATCCGACCCCTACCCAGCT 62.547 60.000 0.00 0.00 0.00 4.24
6323 6980 2.547123 ATCCGACCCCTACCCAGCTT 62.547 60.000 0.00 0.00 0.00 3.74
6324 6981 2.732619 CCGACCCCTACCCAGCTTC 61.733 68.421 0.00 0.00 0.00 3.86
6325 6982 1.686110 CGACCCCTACCCAGCTTCT 60.686 63.158 0.00 0.00 0.00 2.85
6326 6983 1.677637 CGACCCCTACCCAGCTTCTC 61.678 65.000 0.00 0.00 0.00 2.87
6327 6984 1.307084 ACCCCTACCCAGCTTCTCC 60.307 63.158 0.00 0.00 0.00 3.71
6328 6985 2.073101 CCCCTACCCAGCTTCTCCC 61.073 68.421 0.00 0.00 0.00 4.30
6329 6986 1.306997 CCCTACCCAGCTTCTCCCA 60.307 63.158 0.00 0.00 0.00 4.37
6330 6987 1.341156 CCCTACCCAGCTTCTCCCAG 61.341 65.000 0.00 0.00 0.00 4.45
6331 6988 0.325671 CCTACCCAGCTTCTCCCAGA 60.326 60.000 0.00 0.00 0.00 3.86
6332 6989 1.573108 CTACCCAGCTTCTCCCAGAA 58.427 55.000 0.00 0.00 32.50 3.02
6333 6990 2.122768 CTACCCAGCTTCTCCCAGAAT 58.877 52.381 0.00 0.00 33.13 2.40
6334 6991 0.915364 ACCCAGCTTCTCCCAGAATC 59.085 55.000 0.00 0.00 33.13 2.52
6335 6992 1.211456 CCCAGCTTCTCCCAGAATCT 58.789 55.000 0.00 0.00 33.13 2.40
6336 6993 1.563410 CCCAGCTTCTCCCAGAATCTT 59.437 52.381 0.00 0.00 33.13 2.40
6337 6994 2.025510 CCCAGCTTCTCCCAGAATCTTT 60.026 50.000 0.00 0.00 33.13 2.52
6338 6995 3.015327 CCAGCTTCTCCCAGAATCTTTG 58.985 50.000 0.00 0.00 33.13 2.77
6339 6996 3.307975 CCAGCTTCTCCCAGAATCTTTGA 60.308 47.826 0.00 0.00 33.13 2.69
6340 6997 3.940221 CAGCTTCTCCCAGAATCTTTGAG 59.060 47.826 0.00 0.62 33.13 3.02
6341 6998 2.682352 GCTTCTCCCAGAATCTTTGAGC 59.318 50.000 1.93 0.00 33.13 4.26
6342 6999 3.277715 CTTCTCCCAGAATCTTTGAGCC 58.722 50.000 1.93 0.00 33.13 4.70
6343 7000 1.561542 TCTCCCAGAATCTTTGAGCCC 59.438 52.381 1.93 0.00 0.00 5.19
6344 7001 0.625849 TCCCAGAATCTTTGAGCCCC 59.374 55.000 0.00 0.00 0.00 5.80
6345 7002 0.396278 CCCAGAATCTTTGAGCCCCC 60.396 60.000 0.00 0.00 0.00 5.40
6346 7003 0.627986 CCAGAATCTTTGAGCCCCCT 59.372 55.000 0.00 0.00 0.00 4.79
6347 7004 1.006400 CCAGAATCTTTGAGCCCCCTT 59.994 52.381 0.00 0.00 0.00 3.95
6348 7005 2.558350 CCAGAATCTTTGAGCCCCCTTT 60.558 50.000 0.00 0.00 0.00 3.11
6349 7006 2.494870 CAGAATCTTTGAGCCCCCTTTG 59.505 50.000 0.00 0.00 0.00 2.77
6350 7007 2.110721 AGAATCTTTGAGCCCCCTTTGT 59.889 45.455 0.00 0.00 0.00 2.83
6351 7008 2.702270 ATCTTTGAGCCCCCTTTGTT 57.298 45.000 0.00 0.00 0.00 2.83
6352 7009 1.995376 TCTTTGAGCCCCCTTTGTTC 58.005 50.000 0.00 0.00 0.00 3.18
6353 7010 1.499007 TCTTTGAGCCCCCTTTGTTCT 59.501 47.619 0.00 0.00 0.00 3.01
6354 7011 2.714250 TCTTTGAGCCCCCTTTGTTCTA 59.286 45.455 0.00 0.00 0.00 2.10
6355 7012 2.579410 TTGAGCCCCCTTTGTTCTAC 57.421 50.000 0.00 0.00 0.00 2.59
6356 7013 1.440618 TGAGCCCCCTTTGTTCTACA 58.559 50.000 0.00 0.00 0.00 2.74
6357 7014 1.777878 TGAGCCCCCTTTGTTCTACAA 59.222 47.619 0.00 0.00 36.11 2.41
6358 7015 2.378547 TGAGCCCCCTTTGTTCTACAAT 59.621 45.455 0.00 0.00 38.00 2.71
6359 7016 3.017442 GAGCCCCCTTTGTTCTACAATC 58.983 50.000 0.00 0.00 38.00 2.67
6360 7017 2.100197 GCCCCCTTTGTTCTACAATCC 58.900 52.381 0.00 0.00 38.00 3.01
6361 7018 2.291605 GCCCCCTTTGTTCTACAATCCT 60.292 50.000 0.00 0.00 38.00 3.24
6362 7019 3.356290 CCCCCTTTGTTCTACAATCCTG 58.644 50.000 0.00 0.00 38.00 3.86
6363 7020 3.245264 CCCCCTTTGTTCTACAATCCTGT 60.245 47.826 0.00 0.00 38.00 4.00
6364 7021 4.010349 CCCCTTTGTTCTACAATCCTGTC 58.990 47.826 0.00 0.00 38.00 3.51
6365 7022 4.263506 CCCCTTTGTTCTACAATCCTGTCT 60.264 45.833 0.00 0.00 38.00 3.41
6366 7023 5.045869 CCCCTTTGTTCTACAATCCTGTCTA 60.046 44.000 0.00 0.00 38.00 2.59
6367 7024 6.109359 CCCTTTGTTCTACAATCCTGTCTAG 58.891 44.000 0.00 0.00 38.00 2.43
6368 7025 6.295916 CCCTTTGTTCTACAATCCTGTCTAGT 60.296 42.308 0.00 0.00 38.00 2.57
6369 7026 7.162082 CCTTTGTTCTACAATCCTGTCTAGTT 58.838 38.462 0.00 0.00 38.00 2.24
6370 7027 8.311836 CCTTTGTTCTACAATCCTGTCTAGTTA 58.688 37.037 0.00 0.00 38.00 2.24
6371 7028 9.141400 CTTTGTTCTACAATCCTGTCTAGTTAC 57.859 37.037 0.00 0.00 38.00 2.50
6372 7029 6.849502 TGTTCTACAATCCTGTCTAGTTACG 58.150 40.000 0.00 0.00 36.96 3.18
6373 7030 6.127814 TGTTCTACAATCCTGTCTAGTTACGG 60.128 42.308 0.00 0.00 36.96 4.02
6374 7031 5.503927 TCTACAATCCTGTCTAGTTACGGT 58.496 41.667 0.00 0.00 36.96 4.83
6375 7032 4.715527 ACAATCCTGTCTAGTTACGGTC 57.284 45.455 0.00 0.00 0.00 4.79
6376 7033 4.342359 ACAATCCTGTCTAGTTACGGTCT 58.658 43.478 0.00 0.00 0.00 3.85
6377 7034 5.503927 ACAATCCTGTCTAGTTACGGTCTA 58.496 41.667 0.00 0.00 0.00 2.59
6378 7035 5.948162 ACAATCCTGTCTAGTTACGGTCTAA 59.052 40.000 0.00 0.00 0.00 2.10
6379 7036 6.606395 ACAATCCTGTCTAGTTACGGTCTAAT 59.394 38.462 0.00 0.00 0.00 1.73
6380 7037 7.123847 ACAATCCTGTCTAGTTACGGTCTAATT 59.876 37.037 0.00 0.00 0.00 1.40
6381 7038 8.627403 CAATCCTGTCTAGTTACGGTCTAATTA 58.373 37.037 0.00 0.00 0.00 1.40
6382 7039 7.798596 TCCTGTCTAGTTACGGTCTAATTAG 57.201 40.000 6.11 6.11 0.00 1.73
6383 7040 7.568349 TCCTGTCTAGTTACGGTCTAATTAGA 58.432 38.462 11.24 11.24 0.00 2.10
6403 7060 7.921786 TTAGACAGGATTGTAGAACAAATGG 57.078 36.000 0.00 0.00 41.96 3.16
6404 7061 5.256474 AGACAGGATTGTAGAACAAATGGG 58.744 41.667 0.00 0.00 41.96 4.00
6405 7062 4.344104 ACAGGATTGTAGAACAAATGGGG 58.656 43.478 0.00 0.00 41.96 4.96
6406 7063 3.131046 CAGGATTGTAGAACAAATGGGGC 59.869 47.826 0.00 0.00 41.96 5.80
6407 7064 3.011708 AGGATTGTAGAACAAATGGGGCT 59.988 43.478 0.00 0.00 41.96 5.19
6408 7065 3.381590 GGATTGTAGAACAAATGGGGCTC 59.618 47.826 0.00 0.00 41.96 4.70
6409 7066 3.517296 TTGTAGAACAAATGGGGCTCA 57.483 42.857 0.00 0.00 34.76 4.26
6410 7067 3.517296 TGTAGAACAAATGGGGCTCAA 57.483 42.857 0.00 0.00 0.00 3.02
6411 7068 3.838565 TGTAGAACAAATGGGGCTCAAA 58.161 40.909 0.00 0.00 0.00 2.69
6412 7069 3.826157 TGTAGAACAAATGGGGCTCAAAG 59.174 43.478 0.00 0.00 0.00 2.77
6413 7070 3.243359 AGAACAAATGGGGCTCAAAGA 57.757 42.857 0.00 0.00 0.00 2.52
6414 7071 3.782992 AGAACAAATGGGGCTCAAAGAT 58.217 40.909 0.00 0.00 0.00 2.40
6415 7072 4.162651 AGAACAAATGGGGCTCAAAGATT 58.837 39.130 0.00 0.00 0.00 2.40
6416 7073 4.221482 AGAACAAATGGGGCTCAAAGATTC 59.779 41.667 0.00 0.00 0.00 2.52
6417 7074 3.782992 ACAAATGGGGCTCAAAGATTCT 58.217 40.909 0.00 0.00 0.00 2.40
6418 7075 3.512724 ACAAATGGGGCTCAAAGATTCTG 59.487 43.478 0.00 0.00 0.00 3.02
6419 7076 2.449137 ATGGGGCTCAAAGATTCTGG 57.551 50.000 0.00 0.00 0.00 3.86
6420 7077 0.332632 TGGGGCTCAAAGATTCTGGG 59.667 55.000 0.00 0.00 0.00 4.45
6421 7078 0.625849 GGGGCTCAAAGATTCTGGGA 59.374 55.000 0.00 0.00 0.00 4.37
6422 7079 1.409381 GGGGCTCAAAGATTCTGGGAG 60.409 57.143 9.42 9.42 0.00 4.30
6423 7080 1.561542 GGGCTCAAAGATTCTGGGAGA 59.438 52.381 15.41 0.14 0.00 3.71
6424 7081 2.025887 GGGCTCAAAGATTCTGGGAGAA 60.026 50.000 15.41 0.00 38.78 2.87
6425 7082 3.277715 GGCTCAAAGATTCTGGGAGAAG 58.722 50.000 15.41 0.00 37.69 2.85
6426 7083 2.682352 GCTCAAAGATTCTGGGAGAAGC 59.318 50.000 15.41 0.00 40.68 3.86
6430 7087 3.796764 GATTCTGGGAGAAGCTGGG 57.203 57.895 0.00 0.00 37.62 4.45
6431 7088 0.915364 GATTCTGGGAGAAGCTGGGT 59.085 55.000 0.00 0.00 37.62 4.51
6432 7089 2.119495 GATTCTGGGAGAAGCTGGGTA 58.881 52.381 0.00 0.00 37.62 3.69
6433 7090 1.573108 TTCTGGGAGAAGCTGGGTAG 58.427 55.000 0.00 0.00 29.50 3.18
6434 7091 0.325671 TCTGGGAGAAGCTGGGTAGG 60.326 60.000 0.00 0.00 0.00 3.18
6435 7092 1.306997 TGGGAGAAGCTGGGTAGGG 60.307 63.158 0.00 0.00 0.00 3.53
6436 7093 2.073101 GGGAGAAGCTGGGTAGGGG 61.073 68.421 0.00 0.00 0.00 4.79
6437 7094 2.073101 GGAGAAGCTGGGTAGGGGG 61.073 68.421 0.00 0.00 0.00 5.40
6438 7095 2.692741 AGAAGCTGGGTAGGGGGC 60.693 66.667 0.00 0.00 0.00 5.80
6439 7096 4.176752 GAAGCTGGGTAGGGGGCG 62.177 72.222 0.00 0.00 0.00 6.13
6443 7100 2.772622 CTGGGTAGGGGGCGGATT 60.773 66.667 0.00 0.00 0.00 3.01
6444 7101 2.770904 TGGGTAGGGGGCGGATTC 60.771 66.667 0.00 0.00 0.00 2.52
6445 7102 2.447959 GGGTAGGGGGCGGATTCT 60.448 66.667 0.00 0.00 0.00 2.40
6446 7103 2.819284 GGGTAGGGGGCGGATTCTG 61.819 68.421 0.00 0.00 0.00 3.02
6447 7104 2.819284 GGTAGGGGGCGGATTCTGG 61.819 68.421 0.00 0.00 0.00 3.86
6448 7105 2.447765 TAGGGGGCGGATTCTGGG 60.448 66.667 0.00 0.00 0.00 4.45
6449 7106 3.029522 TAGGGGGCGGATTCTGGGA 62.030 63.158 0.00 0.00 0.00 4.37
6450 7107 2.965226 TAGGGGGCGGATTCTGGGAG 62.965 65.000 0.00 0.00 0.00 4.30
6451 7108 2.768344 GGGGCGGATTCTGGGAGA 60.768 66.667 0.00 0.00 0.00 3.71
6452 7109 2.375345 GGGGCGGATTCTGGGAGAA 61.375 63.158 0.00 0.00 38.78 2.87
6453 7110 1.709994 GGGGCGGATTCTGGGAGAAT 61.710 60.000 0.00 0.00 46.84 2.40
6477 7134 4.170292 CCAGATTCTGGCAAAAGAACTG 57.830 45.455 19.49 12.95 45.13 3.16
6478 7135 3.057033 CCAGATTCTGGCAAAAGAACTGG 60.057 47.826 19.49 18.64 45.13 4.00
6479 7136 3.057033 CAGATTCTGGCAAAAGAACTGGG 60.057 47.826 5.73 0.00 38.95 4.45
6480 7137 1.039856 TTCTGGCAAAAGAACTGGGC 58.960 50.000 0.00 0.00 31.19 5.36
6481 7138 0.827507 TCTGGCAAAAGAACTGGGCC 60.828 55.000 0.00 0.00 44.82 5.80
6482 7139 0.829182 CTGGCAAAAGAACTGGGCCT 60.829 55.000 4.53 0.00 44.85 5.19
6483 7140 0.398381 TGGCAAAAGAACTGGGCCTT 60.398 50.000 4.53 0.00 44.85 4.35
6484 7141 0.033920 GGCAAAAGAACTGGGCCTTG 59.966 55.000 4.53 0.00 41.39 3.61
6485 7142 0.033920 GCAAAAGAACTGGGCCTTGG 59.966 55.000 4.53 0.00 0.00 3.61
6491 7148 0.110486 GAACTGGGCCTTGGAGTGAA 59.890 55.000 4.53 0.00 0.00 3.18
6492 7149 0.111253 AACTGGGCCTTGGAGTGAAG 59.889 55.000 4.53 0.00 0.00 3.02
6513 7170 6.267471 TGAAGGCCACATTCTATCTTTTGTTT 59.733 34.615 5.01 0.00 0.00 2.83
6514 7171 6.029346 AGGCCACATTCTATCTTTTGTTTG 57.971 37.500 5.01 0.00 0.00 2.93
6515 7172 4.627035 GGCCACATTCTATCTTTTGTTTGC 59.373 41.667 0.00 0.00 0.00 3.68
6517 7174 5.928264 GCCACATTCTATCTTTTGTTTGCTT 59.072 36.000 0.00 0.00 0.00 3.91
6519 7176 7.062255 GCCACATTCTATCTTTTGTTTGCTTAC 59.938 37.037 0.00 0.00 0.00 2.34
6520 7177 8.299570 CCACATTCTATCTTTTGTTTGCTTACT 58.700 33.333 0.00 0.00 0.00 2.24
6521 7178 9.121517 CACATTCTATCTTTTGTTTGCTTACTG 57.878 33.333 0.00 0.00 0.00 2.74
6525 7182 9.515020 TTCTATCTTTTGTTTGCTTACTGTTTG 57.485 29.630 0.00 0.00 0.00 2.93
6526 7183 8.682710 TCTATCTTTTGTTTGCTTACTGTTTGT 58.317 29.630 0.00 0.00 0.00 2.83
6527 7184 9.301153 CTATCTTTTGTTTGCTTACTGTTTGTT 57.699 29.630 0.00 0.00 0.00 2.83
6529 7186 8.455598 TCTTTTGTTTGCTTACTGTTTGTTAC 57.544 30.769 0.00 0.00 0.00 2.50
6530 7187 8.301002 TCTTTTGTTTGCTTACTGTTTGTTACT 58.699 29.630 0.00 0.00 0.00 2.24
6531 7188 9.562583 CTTTTGTTTGCTTACTGTTTGTTACTA 57.437 29.630 0.00 0.00 0.00 1.82
6589 7492 7.096230 CCGAGTTTGTCAATTTGTTTAACCATC 60.096 37.037 0.00 0.00 0.00 3.51
6604 7507 9.880157 TGTTTAACCATCTGATTAACTACTACC 57.120 33.333 0.00 0.00 0.00 3.18
6609 7512 7.565680 ACCATCTGATTAACTACTACCTTTGG 58.434 38.462 0.00 0.00 0.00 3.28
6618 7521 6.688637 AACTACTACCTTTGGTGAACAAAC 57.311 37.500 0.00 0.00 43.81 2.93
6663 7566 5.874810 TGATTAGCCAACTCTACATCACAAC 59.125 40.000 0.00 0.00 0.00 3.32
6674 7577 0.524862 CATCACAACCTCTTGCAGCC 59.475 55.000 0.00 0.00 0.00 4.85
6693 7596 1.846124 GGAACCTCTCACCCACCCA 60.846 63.158 0.00 0.00 0.00 4.51
6701 7604 0.323629 CTCACCCACCCACGTACATT 59.676 55.000 0.00 0.00 0.00 2.71
6702 7605 1.551430 CTCACCCACCCACGTACATTA 59.449 52.381 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.242011 ACTTTTGGGTTCTACGGTAGGA 58.758 45.455 14.82 3.44 0.00 2.94
1 2 3.690475 ACTTTTGGGTTCTACGGTAGG 57.310 47.619 14.82 0.00 0.00 3.18
4 5 3.208594 GTCAACTTTTGGGTTCTACGGT 58.791 45.455 0.00 0.00 0.00 4.83
5 6 3.207778 TGTCAACTTTTGGGTTCTACGG 58.792 45.455 0.00 0.00 0.00 4.02
7 8 7.266922 TGTATTGTCAACTTTTGGGTTCTAC 57.733 36.000 0.00 0.00 0.00 2.59
8 9 7.883391 TTGTATTGTCAACTTTTGGGTTCTA 57.117 32.000 0.00 0.00 0.00 2.10
9 10 6.783708 TTGTATTGTCAACTTTTGGGTTCT 57.216 33.333 0.00 0.00 0.00 3.01
12 13 9.528489 AGTATATTGTATTGTCAACTTTTGGGT 57.472 29.630 0.00 0.00 0.00 4.51
13 14 9.787532 CAGTATATTGTATTGTCAACTTTTGGG 57.212 33.333 0.00 0.00 0.00 4.12
14 15 9.787532 CCAGTATATTGTATTGTCAACTTTTGG 57.212 33.333 0.00 0.00 0.00 3.28
15 16 9.787532 CCCAGTATATTGTATTGTCAACTTTTG 57.212 33.333 0.00 0.00 0.00 2.44
16 17 8.966868 CCCCAGTATATTGTATTGTCAACTTTT 58.033 33.333 0.00 0.00 0.00 2.27
17 18 7.559897 CCCCCAGTATATTGTATTGTCAACTTT 59.440 37.037 0.00 0.00 0.00 2.66
18 19 7.060421 CCCCCAGTATATTGTATTGTCAACTT 58.940 38.462 0.00 0.00 0.00 2.66
19 20 6.159751 ACCCCCAGTATATTGTATTGTCAACT 59.840 38.462 0.00 0.00 0.00 3.16
20 21 6.262273 CACCCCCAGTATATTGTATTGTCAAC 59.738 42.308 0.00 0.00 0.00 3.18
21 22 6.361433 CACCCCCAGTATATTGTATTGTCAA 58.639 40.000 0.00 0.00 0.00 3.18
22 23 5.163141 CCACCCCCAGTATATTGTATTGTCA 60.163 44.000 0.00 0.00 0.00 3.58
23 24 5.313712 CCACCCCCAGTATATTGTATTGTC 58.686 45.833 0.00 0.00 0.00 3.18
24 25 4.447180 GCCACCCCCAGTATATTGTATTGT 60.447 45.833 0.00 0.00 0.00 2.71
25 26 4.079253 GCCACCCCCAGTATATTGTATTG 58.921 47.826 0.00 0.00 0.00 1.90
32 33 0.105142 ACGAGCCACCCCCAGTATAT 60.105 55.000 0.00 0.00 0.00 0.86
66 67 2.034221 GGAGGCCAACCCAGTGTC 59.966 66.667 5.01 0.00 36.11 3.67
103 105 1.294780 GATCGATGGGCTAGGGCTG 59.705 63.158 0.54 0.00 38.73 4.85
134 136 5.091261 AGATCATGTTTCGTCCTAAAGCT 57.909 39.130 0.00 0.00 0.00 3.74
139 141 3.531538 GCCAAGATCATGTTTCGTCCTA 58.468 45.455 0.00 0.00 0.00 2.94
162 164 3.793144 GGAGCTTCGTGGCTTGCG 61.793 66.667 6.37 0.00 43.20 4.85
180 182 1.672854 CCCTAATCGACCTCGCCACA 61.673 60.000 0.00 0.00 39.60 4.17
193 195 2.657974 AGGGTTTTACAAGGGCCCTAAT 59.342 45.455 28.96 19.30 46.99 1.73
194 196 2.075383 AGGGTTTTACAAGGGCCCTAA 58.925 47.619 28.96 14.04 46.99 2.69
247 249 1.880894 CAGAAGGCGTCGACCTACA 59.119 57.895 10.58 0.00 39.93 2.74
349 351 2.430367 GGCAGTCTCGGTGGGTTT 59.570 61.111 0.00 0.00 0.00 3.27
375 379 4.955811 AACCATCTGCGATAGGTGATAA 57.044 40.909 2.33 0.00 40.09 1.75
376 380 4.955811 AAACCATCTGCGATAGGTGATA 57.044 40.909 2.33 0.00 40.09 2.15
465 469 8.262227 TCGGTAGGTAATCAAACTGTAATTGAT 58.738 33.333 2.62 2.62 46.62 2.57
507 511 4.448060 TGTTTGCATCGAACACGTGTAATA 59.552 37.500 23.69 10.43 33.39 0.98
535 539 2.035576 AGCGGTTTGAGTTACGAAGAGT 59.964 45.455 0.00 0.00 0.00 3.24
584 589 6.210385 TGTGCCCAAATTTGTGTACATAGATT 59.790 34.615 17.79 0.02 27.89 2.40
585 590 5.714333 TGTGCCCAAATTTGTGTACATAGAT 59.286 36.000 17.79 0.00 27.89 1.98
586 591 5.073428 TGTGCCCAAATTTGTGTACATAGA 58.927 37.500 17.79 0.00 27.89 1.98
587 592 5.384063 TGTGCCCAAATTTGTGTACATAG 57.616 39.130 17.79 1.02 27.89 2.23
588 593 5.791336 TTGTGCCCAAATTTGTGTACATA 57.209 34.783 21.11 11.84 32.30 2.29
589 594 4.679373 TTGTGCCCAAATTTGTGTACAT 57.321 36.364 21.11 0.00 32.30 2.29
590 595 4.471904 TTTGTGCCCAAATTTGTGTACA 57.528 36.364 17.79 17.79 35.67 2.90
600 605 2.564947 GGTACATGGATTTGTGCCCAAA 59.435 45.455 0.00 0.00 44.04 3.28
601 606 2.175202 GGTACATGGATTTGTGCCCAA 58.825 47.619 0.00 0.00 44.04 4.12
602 607 1.846007 GGTACATGGATTTGTGCCCA 58.154 50.000 0.00 0.00 44.04 5.36
605 610 6.389830 TGATATTGGTACATGGATTTGTGC 57.610 37.500 0.00 0.00 39.30 4.57
606 611 7.916977 CACTTGATATTGGTACATGGATTTGTG 59.083 37.037 0.00 0.00 39.30 3.33
607 612 7.615365 ACACTTGATATTGGTACATGGATTTGT 59.385 33.333 0.00 0.00 39.30 2.83
608 613 7.916977 CACACTTGATATTGGTACATGGATTTG 59.083 37.037 0.00 0.00 39.30 2.32
609 614 7.833682 TCACACTTGATATTGGTACATGGATTT 59.166 33.333 0.00 0.00 39.30 2.17
610 615 7.345691 TCACACTTGATATTGGTACATGGATT 58.654 34.615 0.00 0.00 39.30 3.01
626 631 5.705441 GGGTGATTGTAAATCTCACACTTGA 59.295 40.000 4.52 0.00 39.64 3.02
629 634 4.567747 GGGGGTGATTGTAAATCTCACACT 60.568 45.833 4.38 0.00 41.88 3.55
662 667 2.271800 GAGACATGTCGTCCATCCAAC 58.728 52.381 19.85 0.00 46.69 3.77
1258 1336 1.880340 CAGCGCAAGGATCTCGGAC 60.880 63.158 11.47 0.00 38.28 4.79
1294 1373 1.200020 GAAGTCAAAACGGGGCATCAG 59.800 52.381 0.00 0.00 0.00 2.90
1303 1382 1.070577 CACGCCTCAGAAGTCAAAACG 60.071 52.381 0.00 0.00 0.00 3.60
1410 1493 1.013596 CGATTATTTCAGCCCGTGCA 58.986 50.000 0.00 0.00 41.13 4.57
1434 1517 2.629639 AGCGAAAATTGTAAAGGCGG 57.370 45.000 0.00 0.00 0.00 6.13
1463 1546 1.224069 CCGCGCATTATCCTCAGTGG 61.224 60.000 8.75 0.00 37.10 4.00
1466 1549 0.317160 TACCCGCGCATTATCCTCAG 59.683 55.000 8.75 0.00 0.00 3.35
1478 1561 2.348218 GCACGAAAAGAATATACCCGCG 60.348 50.000 0.00 0.00 0.00 6.46
1482 1565 6.564125 CGAAGATGGCACGAAAAGAATATACC 60.564 42.308 0.00 0.00 0.00 2.73
1497 1580 1.228094 TGGCACAACGAAGATGGCA 60.228 52.632 0.00 0.00 45.58 4.92
1498 1581 3.667087 TGGCACAACGAAGATGGC 58.333 55.556 0.00 0.00 39.26 4.40
1515 1598 2.416701 CCGCTGCAAATATTTCCCGTTT 60.417 45.455 0.00 0.00 0.00 3.60
1518 1601 0.738389 ACCGCTGCAAATATTTCCCG 59.262 50.000 0.00 0.00 0.00 5.14
1523 1606 3.255642 ACAGAAACACCGCTGCAAATATT 59.744 39.130 0.00 0.00 35.57 1.28
1546 1629 3.725895 CGTCAAAAGACCTCGATGCATTG 60.726 47.826 7.70 7.70 0.00 2.82
1548 1631 2.002586 CGTCAAAAGACCTCGATGCAT 58.997 47.619 0.00 0.00 0.00 3.96
1549 1632 1.000394 TCGTCAAAAGACCTCGATGCA 60.000 47.619 0.00 0.00 0.00 3.96
1554 1637 6.519761 CACAATTAAATCGTCAAAAGACCTCG 59.480 38.462 0.00 0.00 0.00 4.63
1571 1654 9.990360 TGGAATATCGTATTCTAGCACAATTAA 57.010 29.630 13.67 0.00 0.00 1.40
1573 1656 8.939929 CATGGAATATCGTATTCTAGCACAATT 58.060 33.333 13.67 0.00 0.00 2.32
1574 1657 7.550551 CCATGGAATATCGTATTCTAGCACAAT 59.449 37.037 5.56 0.00 0.00 2.71
1575 1658 6.873605 CCATGGAATATCGTATTCTAGCACAA 59.126 38.462 5.56 0.00 0.00 3.33
1580 1663 6.867550 TCAGCCATGGAATATCGTATTCTAG 58.132 40.000 18.40 0.00 0.00 2.43
1581 1664 6.850752 TCAGCCATGGAATATCGTATTCTA 57.149 37.500 18.40 10.17 0.00 2.10
1582 1665 5.745312 TCAGCCATGGAATATCGTATTCT 57.255 39.130 18.40 0.00 0.00 2.40
1583 1666 5.934625 AGTTCAGCCATGGAATATCGTATTC 59.065 40.000 18.40 8.40 0.00 1.75
1589 1673 4.454678 TCACAGTTCAGCCATGGAATATC 58.545 43.478 18.40 2.08 0.00 1.63
1597 1681 6.594788 AATTTTACATCACAGTTCAGCCAT 57.405 33.333 0.00 0.00 0.00 4.40
1625 1709 8.745837 CAGCAGACAAAATAACTTGTAAACTTG 58.254 33.333 0.00 0.00 39.63 3.16
1706 1790 0.315568 CCTCCTCGGGCTCTATTTCG 59.684 60.000 0.00 0.00 0.00 3.46
1850 1934 2.046292 GCCTGGATCCTTAGCTTCTCT 58.954 52.381 14.23 0.00 0.00 3.10
1898 1982 0.108186 CACCAACCTCTGCAGCGATA 60.108 55.000 9.47 0.00 0.00 2.92
1967 2051 5.614324 TTGTCTCGGTGATATCCTTGATT 57.386 39.130 0.00 0.00 0.00 2.57
2059 2143 4.334203 TGCTACCAACATAATGCCTTTACG 59.666 41.667 0.00 0.00 0.00 3.18
2138 2222 9.605275 CTGATGATCTAACAAAGACATTTCCTA 57.395 33.333 0.00 0.00 36.93 2.94
2177 2261 0.454600 CATAGCAAGGCAGCACCAAG 59.545 55.000 4.78 0.00 43.14 3.61
2198 2282 7.716799 TGAATACTATTCAATTGCAACCCTT 57.283 32.000 0.00 0.00 0.00 3.95
2236 2320 8.026396 ACAGTAAGAAAGGTACCTACAAGAAA 57.974 34.615 16.67 0.00 0.00 2.52
2274 2358 5.932303 TGTACTTCCAGTTAGCATGAAGTTC 59.068 40.000 15.36 12.14 0.00 3.01
2316 2400 3.169355 AGTGCAAAGCCAAGAACAAAG 57.831 42.857 0.00 0.00 0.00 2.77
2322 2406 1.545582 GCCAATAGTGCAAAGCCAAGA 59.454 47.619 0.00 0.00 0.00 3.02
2328 2412 1.747355 CCCAGAGCCAATAGTGCAAAG 59.253 52.381 0.00 0.00 0.00 2.77
2337 2421 3.118531 ACTTGAGATACCCAGAGCCAAT 58.881 45.455 0.00 0.00 0.00 3.16
2833 2918 8.619146 TGATGAAAATATTCTTCAATTCGCAC 57.381 30.769 13.43 1.13 43.06 5.34
2841 2926 7.830697 TGAGAAGCCTGATGAAAATATTCTTCA 59.169 33.333 12.41 12.41 43.50 3.02
2962 3048 6.480763 TGGATCAAAGGAGTTATAGTTGCAA 58.519 36.000 0.00 0.00 0.00 4.08
3175 3261 5.474876 ACAGGAATTTGAATTGGAGAGTGTC 59.525 40.000 0.00 0.00 0.00 3.67
3183 3269 5.416952 AGCAGACTACAGGAATTTGAATTGG 59.583 40.000 0.00 0.00 0.00 3.16
3185 3271 8.814038 ATTAGCAGACTACAGGAATTTGAATT 57.186 30.769 0.00 0.00 0.00 2.17
3234 3320 3.127548 CGCAAAATGCAGGAATAGAGTGT 59.872 43.478 2.99 0.00 45.36 3.55
3331 3440 7.201478 CGGTCAAGTTTGCAGAAATAACAAAAA 60.201 33.333 1.37 0.00 35.25 1.94
3557 3677 5.691754 CAGAAAAGAAAAGTTACATGTGGCC 59.308 40.000 9.11 0.00 0.00 5.36
3567 3693 8.978539 GTTTGACAACTTCAGAAAAGAAAAGTT 58.021 29.630 0.00 0.00 41.36 2.66
3568 3694 8.141268 TGTTTGACAACTTCAGAAAAGAAAAGT 58.859 29.630 0.00 0.00 34.94 2.66
3569 3695 8.519492 TGTTTGACAACTTCAGAAAAGAAAAG 57.481 30.769 0.00 0.00 34.94 2.27
3571 3697 8.924691 CATTGTTTGACAACTTCAGAAAAGAAA 58.075 29.630 0.00 0.00 41.40 2.52
3572 3698 7.063308 GCATTGTTTGACAACTTCAGAAAAGAA 59.937 33.333 0.00 0.00 41.40 2.52
3573 3699 6.531240 GCATTGTTTGACAACTTCAGAAAAGA 59.469 34.615 0.00 0.00 41.40 2.52
3574 3700 6.532657 AGCATTGTTTGACAACTTCAGAAAAG 59.467 34.615 0.00 0.00 41.40 2.27
3781 3911 2.586079 CCGCAGCACCCATAGTCG 60.586 66.667 0.00 0.00 0.00 4.18
3826 3956 2.290260 TGCTATGTGTGGAAACTCCCAG 60.290 50.000 0.00 0.00 36.78 4.45
4005 4136 9.807386 GTTACACAGTCAAATACAAGTCAATAC 57.193 33.333 0.00 0.00 0.00 1.89
4024 4155 1.201647 GAGCCTCGCTAGTGTTACACA 59.798 52.381 18.19 3.12 39.88 3.72
4037 4168 3.002791 TGCAACTAGAAATTGAGCCTCG 58.997 45.455 0.00 0.00 0.00 4.63
4094 4227 8.244113 GGAAACAAACCAATAACTTATCAGAGG 58.756 37.037 0.00 0.00 0.00 3.69
4211 4346 4.291249 TGAGCCAAATTAGAAACCTACCCT 59.709 41.667 0.00 0.00 0.00 4.34
4260 4395 0.326595 TTGCTAAATGGCGGAGGTGA 59.673 50.000 0.00 0.00 34.52 4.02
4271 4406 7.794041 TCAATTAAATCCTGGCATTGCTAAAT 58.206 30.769 8.82 0.00 0.00 1.40
4461 4596 5.065218 CACAGGTAGAGGAACATAAACATGC 59.935 44.000 0.00 0.00 0.00 4.06
4462 4597 5.065218 GCACAGGTAGAGGAACATAAACATG 59.935 44.000 0.00 0.00 0.00 3.21
4463 4598 5.186198 GCACAGGTAGAGGAACATAAACAT 58.814 41.667 0.00 0.00 0.00 2.71
4464 4599 4.041075 TGCACAGGTAGAGGAACATAAACA 59.959 41.667 0.00 0.00 0.00 2.83
4465 4600 4.575885 TGCACAGGTAGAGGAACATAAAC 58.424 43.478 0.00 0.00 0.00 2.01
4466 4601 4.901197 TGCACAGGTAGAGGAACATAAA 57.099 40.909 0.00 0.00 0.00 1.40
4535 4670 2.594131 ACTGTGTACTGTGTAGAGCCA 58.406 47.619 0.00 0.00 0.00 4.75
4616 4759 1.204146 GAGGTGGTCTATTGGGAGCA 58.796 55.000 0.00 0.00 40.71 4.26
4617 4760 1.414550 GAGAGGTGGTCTATTGGGAGC 59.585 57.143 0.00 0.00 34.71 4.70
4618 4761 2.752030 TGAGAGGTGGTCTATTGGGAG 58.248 52.381 0.00 0.00 34.71 4.30
4619 4762 2.940514 TGAGAGGTGGTCTATTGGGA 57.059 50.000 0.00 0.00 34.71 4.37
4620 4763 4.510167 AAATGAGAGGTGGTCTATTGGG 57.490 45.455 0.00 0.00 34.71 4.12
4676 4821 7.013274 GCAGCAGAGGTAATTAATATGGTTTCA 59.987 37.037 0.00 0.00 0.00 2.69
4692 4837 1.927527 AGGGGATTGCAGCAGAGGT 60.928 57.895 0.00 0.00 0.00 3.85
4714 4859 1.909700 TCAATGAGAAGTGTTGCCCC 58.090 50.000 0.00 0.00 0.00 5.80
4719 4864 8.908786 TTTCTAACAGATCAATGAGAAGTGTT 57.091 30.769 0.00 7.24 38.80 3.32
4749 4894 5.965486 ACTAACAGAAGAAGGGGGAAAAAT 58.035 37.500 0.00 0.00 0.00 1.82
4755 4900 3.055312 GTGGTACTAACAGAAGAAGGGGG 60.055 52.174 0.00 0.00 0.00 5.40
4756 4901 3.055312 GGTGGTACTAACAGAAGAAGGGG 60.055 52.174 0.00 0.00 0.00 4.79
4875 5020 0.390472 CTCAAGGAGTCAAGGGCGAC 60.390 60.000 0.00 0.00 36.08 5.19
5047 5194 7.224167 GGCTAGTACATGTCCAACAAGTATTAC 59.776 40.741 0.00 0.00 35.20 1.89
5055 5202 1.557832 GGGGCTAGTACATGTCCAACA 59.442 52.381 0.00 0.00 0.00 3.33
5076 5223 9.014297 AGACATTTTAGACTTTTAGTTGATGGG 57.986 33.333 0.00 0.00 0.00 4.00
5079 5226 9.574516 ACCAGACATTTTAGACTTTTAGTTGAT 57.425 29.630 0.00 0.00 0.00 2.57
5208 5781 4.796231 CTCGCCAACCCTCGTCCG 62.796 72.222 0.00 0.00 0.00 4.79
5218 5791 0.818296 GAACTAGAGGAGCTCGCCAA 59.182 55.000 7.83 0.00 35.36 4.52
5242 5815 1.792367 GAATGTCCAAAGCGCCAAAAC 59.208 47.619 2.29 0.00 0.00 2.43
5251 5824 2.146342 AGAGCGTGTGAATGTCCAAAG 58.854 47.619 0.00 0.00 0.00 2.77
5262 5835 0.657312 TGTGCTTTGAAGAGCGTGTG 59.343 50.000 0.00 0.00 45.64 3.82
5277 5850 7.864379 CAGAATAGAAATTATGGGTCATTGTGC 59.136 37.037 0.00 0.00 31.91 4.57
5359 6007 3.015675 TGGGCAATCATATGTGCTGAA 57.984 42.857 15.55 2.50 40.70 3.02
5400 6048 7.057894 ACATAGGTGTCAAACTTTAACCTTCA 58.942 34.615 0.00 0.00 41.46 3.02
5482 6133 6.424509 CAGATTGCCAACTTAATTGCTGAAAA 59.575 34.615 0.00 0.00 36.93 2.29
5502 6153 9.209175 GTGTTCTCTAAATGAAGTACACAGATT 57.791 33.333 0.00 0.00 33.88 2.40
5505 6156 8.594881 AAGTGTTCTCTAAATGAAGTACACAG 57.405 34.615 12.62 0.00 35.03 3.66
5611 6262 1.968017 ACCATTCCACTGCAGCACG 60.968 57.895 15.27 2.10 0.00 5.34
5679 6330 2.159170 AGTTATCTGAACTGCTCTCCGC 60.159 50.000 0.00 0.00 39.77 5.54
5681 6332 5.988561 CCATTAGTTATCTGAACTGCTCTCC 59.011 44.000 0.22 0.00 0.00 3.71
5888 6539 1.598685 GAACCCAAGTTTCCGCGGA 60.599 57.895 27.28 27.28 35.94 5.54
5985 6636 8.524487 ACTGTATAGAACCACTTAAGAGTTCAG 58.476 37.037 28.47 22.63 41.86 3.02
5986 6637 8.304596 CACTGTATAGAACCACTTAAGAGTTCA 58.695 37.037 28.47 20.30 41.86 3.18
5994 6645 7.287005 CCAGGTATCACTGTATAGAACCACTTA 59.713 40.741 0.00 0.00 36.75 2.24
6001 6652 6.546403 GTGAGTCCAGGTATCACTGTATAGAA 59.454 42.308 15.61 0.00 40.14 2.10
6042 6693 0.834687 ACAAAGGTGAGGGGCGAGTA 60.835 55.000 0.00 0.00 0.00 2.59
6063 6714 6.090088 CAGCATCTATATTACACGAGGAAAGC 59.910 42.308 0.00 0.00 0.00 3.51
6087 6738 2.782925 TCCTTATTCTGCTTATGGGGCA 59.217 45.455 0.00 0.00 38.10 5.36
6088 6739 3.508845 TCCTTATTCTGCTTATGGGGC 57.491 47.619 0.00 0.00 0.00 5.80
6089 6740 4.768968 CCATTCCTTATTCTGCTTATGGGG 59.231 45.833 0.00 0.00 0.00 4.96
6090 6741 4.219288 GCCATTCCTTATTCTGCTTATGGG 59.781 45.833 0.00 0.00 33.55 4.00
6091 6742 4.219288 GGCCATTCCTTATTCTGCTTATGG 59.781 45.833 0.00 0.00 35.52 2.74
6208 6865 2.917971 GAGTGAGACAGACCGATTTTCG 59.082 50.000 0.00 0.00 40.07 3.46
6219 6876 3.925299 CAGCAACATACTGAGTGAGACAG 59.075 47.826 0.00 0.00 37.32 3.51
6226 6883 2.554032 GCCAAACAGCAACATACTGAGT 59.446 45.455 0.00 0.00 38.55 3.41
6249 6906 1.079888 GCCCAAATTGTTGCCCTCG 60.080 57.895 0.00 0.00 33.01 4.63
6255 6912 1.693606 AGAACTGGGCCCAAATTGTTG 59.306 47.619 26.98 16.35 34.25 3.33
6267 6924 4.702131 CCAGATTCTGGTAAAAGAACTGGG 59.298 45.833 22.45 0.00 45.82 4.45
6293 6950 1.132500 GGGTCGGATTCTGGGAGAAT 58.868 55.000 0.00 0.00 46.84 2.40
6294 6951 0.981277 GGGGTCGGATTCTGGGAGAA 60.981 60.000 0.00 0.00 38.78 2.87
6295 6952 1.382695 GGGGTCGGATTCTGGGAGA 60.383 63.158 0.00 0.00 0.00 3.71
6296 6953 0.105658 TAGGGGTCGGATTCTGGGAG 60.106 60.000 0.00 0.00 0.00 4.30
6297 6954 0.398098 GTAGGGGTCGGATTCTGGGA 60.398 60.000 0.00 0.00 0.00 4.37
6298 6955 1.408453 GGTAGGGGTCGGATTCTGGG 61.408 65.000 0.00 0.00 0.00 4.45
6299 6956 1.408453 GGGTAGGGGTCGGATTCTGG 61.408 65.000 0.00 0.00 0.00 3.86
6300 6957 0.689745 TGGGTAGGGGTCGGATTCTG 60.690 60.000 0.00 0.00 0.00 3.02
6301 6958 0.398664 CTGGGTAGGGGTCGGATTCT 60.399 60.000 0.00 0.00 0.00 2.40
6302 6959 2.041206 GCTGGGTAGGGGTCGGATTC 62.041 65.000 0.00 0.00 0.00 2.52
6303 6960 2.070650 GCTGGGTAGGGGTCGGATT 61.071 63.158 0.00 0.00 0.00 3.01
6304 6961 2.446036 GCTGGGTAGGGGTCGGAT 60.446 66.667 0.00 0.00 0.00 4.18
6305 6962 3.248248 AAGCTGGGTAGGGGTCGGA 62.248 63.158 0.00 0.00 0.00 4.55
6306 6963 2.687566 AAGCTGGGTAGGGGTCGG 60.688 66.667 0.00 0.00 0.00 4.79
6307 6964 1.677637 GAGAAGCTGGGTAGGGGTCG 61.678 65.000 0.00 0.00 0.00 4.79
6308 6965 1.338890 GGAGAAGCTGGGTAGGGGTC 61.339 65.000 0.00 0.00 0.00 4.46
6309 6966 1.307084 GGAGAAGCTGGGTAGGGGT 60.307 63.158 0.00 0.00 0.00 4.95
6310 6967 2.073101 GGGAGAAGCTGGGTAGGGG 61.073 68.421 0.00 0.00 0.00 4.79
6311 6968 1.306997 TGGGAGAAGCTGGGTAGGG 60.307 63.158 0.00 0.00 0.00 3.53
6312 6969 0.325671 TCTGGGAGAAGCTGGGTAGG 60.326 60.000 0.00 0.00 0.00 3.18
6313 6970 1.573108 TTCTGGGAGAAGCTGGGTAG 58.427 55.000 0.00 0.00 29.50 3.18
6314 6971 2.119495 GATTCTGGGAGAAGCTGGGTA 58.881 52.381 0.00 0.00 37.62 3.69
6315 6972 0.915364 GATTCTGGGAGAAGCTGGGT 59.085 55.000 0.00 0.00 37.62 4.51
6316 6973 3.796764 GATTCTGGGAGAAGCTGGG 57.203 57.895 0.00 0.00 37.62 4.45
6320 6977 2.682352 GCTCAAAGATTCTGGGAGAAGC 59.318 50.000 15.41 0.00 40.68 3.86
6321 6978 3.277715 GGCTCAAAGATTCTGGGAGAAG 58.722 50.000 15.41 0.00 37.69 2.85
6322 6979 2.025887 GGGCTCAAAGATTCTGGGAGAA 60.026 50.000 15.41 0.00 38.78 2.87
6323 6980 1.561542 GGGCTCAAAGATTCTGGGAGA 59.438 52.381 15.41 0.14 0.00 3.71
6324 6981 1.409381 GGGGCTCAAAGATTCTGGGAG 60.409 57.143 9.42 9.42 0.00 4.30
6325 6982 0.625849 GGGGCTCAAAGATTCTGGGA 59.374 55.000 0.00 0.00 0.00 4.37
6326 6983 0.396278 GGGGGCTCAAAGATTCTGGG 60.396 60.000 0.00 0.00 0.00 4.45
6327 6984 0.627986 AGGGGGCTCAAAGATTCTGG 59.372 55.000 0.00 0.00 0.00 3.86
6328 6985 2.494870 CAAAGGGGGCTCAAAGATTCTG 59.505 50.000 0.00 0.00 0.00 3.02
6329 6986 2.110721 ACAAAGGGGGCTCAAAGATTCT 59.889 45.455 0.00 0.00 0.00 2.40
6330 6987 2.529632 ACAAAGGGGGCTCAAAGATTC 58.470 47.619 0.00 0.00 0.00 2.52
6331 6988 2.702270 ACAAAGGGGGCTCAAAGATT 57.298 45.000 0.00 0.00 0.00 2.40
6332 6989 2.110721 AGAACAAAGGGGGCTCAAAGAT 59.889 45.455 0.00 0.00 0.00 2.40
6333 6990 1.499007 AGAACAAAGGGGGCTCAAAGA 59.501 47.619 0.00 0.00 0.00 2.52
6334 6991 2.001076 AGAACAAAGGGGGCTCAAAG 57.999 50.000 0.00 0.00 0.00 2.77
6335 6992 2.175931 TGTAGAACAAAGGGGGCTCAAA 59.824 45.455 0.00 0.00 0.00 2.69
6336 6993 1.777878 TGTAGAACAAAGGGGGCTCAA 59.222 47.619 0.00 0.00 0.00 3.02
6337 6994 1.440618 TGTAGAACAAAGGGGGCTCA 58.559 50.000 0.00 0.00 0.00 4.26
6338 6995 2.579410 TTGTAGAACAAAGGGGGCTC 57.421 50.000 0.00 0.00 34.76 4.70
6339 6996 2.291605 GGATTGTAGAACAAAGGGGGCT 60.292 50.000 0.00 0.00 41.96 5.19
6340 6997 2.100197 GGATTGTAGAACAAAGGGGGC 58.900 52.381 0.00 0.00 41.96 5.80
6341 6998 3.245264 ACAGGATTGTAGAACAAAGGGGG 60.245 47.826 0.00 0.00 41.96 5.40
6342 6999 4.010349 GACAGGATTGTAGAACAAAGGGG 58.990 47.826 0.00 0.00 41.96 4.79
6343 7000 4.911390 AGACAGGATTGTAGAACAAAGGG 58.089 43.478 0.00 0.00 41.96 3.95
6344 7001 6.702329 ACTAGACAGGATTGTAGAACAAAGG 58.298 40.000 0.00 0.00 41.96 3.11
6345 7002 9.141400 GTAACTAGACAGGATTGTAGAACAAAG 57.859 37.037 0.00 0.00 41.96 2.77
6346 7003 7.811236 CGTAACTAGACAGGATTGTAGAACAAA 59.189 37.037 0.00 0.00 41.96 2.83
6347 7004 7.310664 CGTAACTAGACAGGATTGTAGAACAA 58.689 38.462 0.00 0.00 42.95 2.83
6348 7005 6.127814 CCGTAACTAGACAGGATTGTAGAACA 60.128 42.308 0.00 0.00 37.76 3.18
6349 7006 6.127786 ACCGTAACTAGACAGGATTGTAGAAC 60.128 42.308 0.00 0.00 37.76 3.01
6350 7007 5.948162 ACCGTAACTAGACAGGATTGTAGAA 59.052 40.000 0.00 0.00 37.76 2.10
6351 7008 5.503927 ACCGTAACTAGACAGGATTGTAGA 58.496 41.667 0.00 0.00 37.76 2.59
6352 7009 5.589452 AGACCGTAACTAGACAGGATTGTAG 59.411 44.000 0.00 0.00 37.76 2.74
6353 7010 5.503927 AGACCGTAACTAGACAGGATTGTA 58.496 41.667 0.00 0.00 37.76 2.41
6354 7011 4.342359 AGACCGTAACTAGACAGGATTGT 58.658 43.478 0.00 0.00 41.18 2.71
6355 7012 4.985538 AGACCGTAACTAGACAGGATTG 57.014 45.455 0.00 0.00 0.00 2.67
6356 7013 7.657023 AATTAGACCGTAACTAGACAGGATT 57.343 36.000 0.00 0.00 0.00 3.01
6357 7014 8.216423 TCTAATTAGACCGTAACTAGACAGGAT 58.784 37.037 11.24 0.00 0.00 3.24
6358 7015 7.497249 GTCTAATTAGACCGTAACTAGACAGGA 59.503 40.741 28.25 0.00 45.33 3.86
6359 7016 7.638134 GTCTAATTAGACCGTAACTAGACAGG 58.362 42.308 28.25 0.00 45.33 4.00
6373 7030 9.871238 TTGTTCTACAATCCTGTCTAATTAGAC 57.129 33.333 30.61 30.61 41.84 2.59
6377 7034 8.960591 CCATTTGTTCTACAATCCTGTCTAATT 58.039 33.333 0.00 0.00 38.00 1.40
6378 7035 7.557719 CCCATTTGTTCTACAATCCTGTCTAAT 59.442 37.037 0.00 0.00 38.00 1.73
6379 7036 6.884295 CCCATTTGTTCTACAATCCTGTCTAA 59.116 38.462 0.00 0.00 38.00 2.10
6380 7037 6.414732 CCCATTTGTTCTACAATCCTGTCTA 58.585 40.000 0.00 0.00 38.00 2.59
6381 7038 5.256474 CCCATTTGTTCTACAATCCTGTCT 58.744 41.667 0.00 0.00 38.00 3.41
6382 7039 4.399303 CCCCATTTGTTCTACAATCCTGTC 59.601 45.833 0.00 0.00 38.00 3.51
6383 7040 4.344104 CCCCATTTGTTCTACAATCCTGT 58.656 43.478 0.00 0.00 38.00 4.00
6384 7041 3.131046 GCCCCATTTGTTCTACAATCCTG 59.869 47.826 0.00 0.00 38.00 3.86
6385 7042 3.011708 AGCCCCATTTGTTCTACAATCCT 59.988 43.478 0.00 0.00 38.00 3.24
6386 7043 3.365472 AGCCCCATTTGTTCTACAATCC 58.635 45.455 0.00 0.00 38.00 3.01
6387 7044 4.016444 TGAGCCCCATTTGTTCTACAATC 58.984 43.478 0.00 0.00 38.00 2.67
6388 7045 4.046286 TGAGCCCCATTTGTTCTACAAT 57.954 40.909 0.00 0.00 38.00 2.71
6389 7046 3.517296 TGAGCCCCATTTGTTCTACAA 57.483 42.857 0.00 0.00 36.11 2.41
6390 7047 3.517296 TTGAGCCCCATTTGTTCTACA 57.483 42.857 0.00 0.00 0.00 2.74
6391 7048 4.079253 TCTTTGAGCCCCATTTGTTCTAC 58.921 43.478 0.00 0.00 0.00 2.59
6392 7049 4.380843 TCTTTGAGCCCCATTTGTTCTA 57.619 40.909 0.00 0.00 0.00 2.10
6393 7050 3.243359 TCTTTGAGCCCCATTTGTTCT 57.757 42.857 0.00 0.00 0.00 3.01
6394 7051 4.221482 AGAATCTTTGAGCCCCATTTGTTC 59.779 41.667 0.00 0.00 0.00 3.18
6395 7052 4.020839 CAGAATCTTTGAGCCCCATTTGTT 60.021 41.667 0.00 0.00 0.00 2.83
6396 7053 3.512724 CAGAATCTTTGAGCCCCATTTGT 59.487 43.478 0.00 0.00 0.00 2.83
6397 7054 3.118884 CCAGAATCTTTGAGCCCCATTTG 60.119 47.826 0.00 0.00 0.00 2.32
6398 7055 3.102204 CCAGAATCTTTGAGCCCCATTT 58.898 45.455 0.00 0.00 0.00 2.32
6399 7056 2.625087 CCCAGAATCTTTGAGCCCCATT 60.625 50.000 0.00 0.00 0.00 3.16
6400 7057 1.063417 CCCAGAATCTTTGAGCCCCAT 60.063 52.381 0.00 0.00 0.00 4.00
6401 7058 0.332632 CCCAGAATCTTTGAGCCCCA 59.667 55.000 0.00 0.00 0.00 4.96
6402 7059 0.625849 TCCCAGAATCTTTGAGCCCC 59.374 55.000 0.00 0.00 0.00 5.80
6403 7060 1.561542 TCTCCCAGAATCTTTGAGCCC 59.438 52.381 1.93 0.00 0.00 5.19
6404 7061 3.277715 CTTCTCCCAGAATCTTTGAGCC 58.722 50.000 1.93 0.00 33.13 4.70
6405 7062 2.682352 GCTTCTCCCAGAATCTTTGAGC 59.318 50.000 1.93 0.00 33.13 4.26
6406 7063 3.940221 CAGCTTCTCCCAGAATCTTTGAG 59.060 47.826 0.00 0.62 33.13 3.02
6407 7064 3.307975 CCAGCTTCTCCCAGAATCTTTGA 60.308 47.826 0.00 0.00 33.13 2.69
6408 7065 3.015327 CCAGCTTCTCCCAGAATCTTTG 58.985 50.000 0.00 0.00 33.13 2.77
6409 7066 2.025510 CCCAGCTTCTCCCAGAATCTTT 60.026 50.000 0.00 0.00 33.13 2.52
6410 7067 1.563410 CCCAGCTTCTCCCAGAATCTT 59.437 52.381 0.00 0.00 33.13 2.40
6411 7068 1.211456 CCCAGCTTCTCCCAGAATCT 58.789 55.000 0.00 0.00 33.13 2.40
6412 7069 0.915364 ACCCAGCTTCTCCCAGAATC 59.085 55.000 0.00 0.00 33.13 2.52
6413 7070 2.122768 CTACCCAGCTTCTCCCAGAAT 58.877 52.381 0.00 0.00 33.13 2.40
6414 7071 1.573108 CTACCCAGCTTCTCCCAGAA 58.427 55.000 0.00 0.00 32.50 3.02
6415 7072 0.325671 CCTACCCAGCTTCTCCCAGA 60.326 60.000 0.00 0.00 0.00 3.86
6416 7073 1.341156 CCCTACCCAGCTTCTCCCAG 61.341 65.000 0.00 0.00 0.00 4.45
6417 7074 1.306997 CCCTACCCAGCTTCTCCCA 60.307 63.158 0.00 0.00 0.00 4.37
6418 7075 2.073101 CCCCTACCCAGCTTCTCCC 61.073 68.421 0.00 0.00 0.00 4.30
6419 7076 2.073101 CCCCCTACCCAGCTTCTCC 61.073 68.421 0.00 0.00 0.00 3.71
6420 7077 2.747443 GCCCCCTACCCAGCTTCTC 61.747 68.421 0.00 0.00 0.00 2.87
6421 7078 2.692741 GCCCCCTACCCAGCTTCT 60.693 66.667 0.00 0.00 0.00 2.85
6422 7079 4.176752 CGCCCCCTACCCAGCTTC 62.177 72.222 0.00 0.00 0.00 3.86
6426 7083 2.772622 AATCCGCCCCCTACCCAG 60.773 66.667 0.00 0.00 0.00 4.45
6427 7084 2.770904 GAATCCGCCCCCTACCCA 60.771 66.667 0.00 0.00 0.00 4.51
6428 7085 2.447959 AGAATCCGCCCCCTACCC 60.448 66.667 0.00 0.00 0.00 3.69
6429 7086 2.819284 CCAGAATCCGCCCCCTACC 61.819 68.421 0.00 0.00 0.00 3.18
6430 7087 2.819284 CCCAGAATCCGCCCCCTAC 61.819 68.421 0.00 0.00 0.00 3.18
6431 7088 2.447765 CCCAGAATCCGCCCCCTA 60.448 66.667 0.00 0.00 0.00 3.53
6432 7089 4.431524 TCCCAGAATCCGCCCCCT 62.432 66.667 0.00 0.00 0.00 4.79
6433 7090 3.878667 CTCCCAGAATCCGCCCCC 61.879 72.222 0.00 0.00 0.00 5.40
6434 7091 1.709994 ATTCTCCCAGAATCCGCCCC 61.710 60.000 0.00 0.00 40.75 5.80
6435 7092 1.839894 ATTCTCCCAGAATCCGCCC 59.160 57.895 0.00 0.00 40.75 6.13
6457 7114 3.057033 CCCAGTTCTTTTGCCAGAATCTG 60.057 47.826 2.68 2.68 35.23 2.90
6458 7115 3.160269 CCCAGTTCTTTTGCCAGAATCT 58.840 45.455 0.00 0.00 35.23 2.40
6459 7116 2.353109 GCCCAGTTCTTTTGCCAGAATC 60.353 50.000 0.00 0.00 35.23 2.52
6460 7117 1.620323 GCCCAGTTCTTTTGCCAGAAT 59.380 47.619 0.00 0.00 35.23 2.40
6461 7118 1.039856 GCCCAGTTCTTTTGCCAGAA 58.960 50.000 0.00 0.00 0.00 3.02
6462 7119 0.827507 GGCCCAGTTCTTTTGCCAGA 60.828 55.000 0.00 0.00 41.76 3.86
6463 7120 0.829182 AGGCCCAGTTCTTTTGCCAG 60.829 55.000 0.00 0.00 44.60 4.85
6464 7121 0.398381 AAGGCCCAGTTCTTTTGCCA 60.398 50.000 0.00 0.00 44.60 4.92
6465 7122 0.033920 CAAGGCCCAGTTCTTTTGCC 59.966 55.000 0.00 0.00 42.48 4.52
6466 7123 0.033920 CCAAGGCCCAGTTCTTTTGC 59.966 55.000 0.00 0.00 0.00 3.68
6467 7124 1.615392 CTCCAAGGCCCAGTTCTTTTG 59.385 52.381 0.00 0.00 0.00 2.44
6468 7125 1.217942 ACTCCAAGGCCCAGTTCTTTT 59.782 47.619 0.00 0.00 0.00 2.27
6469 7126 0.853530 ACTCCAAGGCCCAGTTCTTT 59.146 50.000 0.00 0.00 0.00 2.52
6470 7127 0.111253 CACTCCAAGGCCCAGTTCTT 59.889 55.000 0.00 0.00 0.00 2.52
6471 7128 0.768221 TCACTCCAAGGCCCAGTTCT 60.768 55.000 0.00 0.00 0.00 3.01
6472 7129 0.110486 TTCACTCCAAGGCCCAGTTC 59.890 55.000 0.00 0.00 0.00 3.01
6473 7130 0.111253 CTTCACTCCAAGGCCCAGTT 59.889 55.000 0.00 0.00 0.00 3.16
6474 7131 1.763770 CTTCACTCCAAGGCCCAGT 59.236 57.895 0.00 0.00 0.00 4.00
6475 7132 1.001641 CCTTCACTCCAAGGCCCAG 60.002 63.158 0.00 0.00 36.72 4.45
6476 7133 3.170362 CCTTCACTCCAAGGCCCA 58.830 61.111 0.00 0.00 36.72 5.36
6480 7137 0.038744 ATGTGGCCTTCACTCCAAGG 59.961 55.000 3.32 0.00 46.20 3.61
6481 7138 1.815003 GAATGTGGCCTTCACTCCAAG 59.185 52.381 3.32 0.00 46.20 3.61
6482 7139 1.425066 AGAATGTGGCCTTCACTCCAA 59.575 47.619 3.32 0.00 46.20 3.53
6483 7140 1.067295 AGAATGTGGCCTTCACTCCA 58.933 50.000 3.32 0.00 46.20 3.86
6484 7141 3.135530 AGATAGAATGTGGCCTTCACTCC 59.864 47.826 3.32 0.00 46.20 3.85
6485 7142 4.414337 AGATAGAATGTGGCCTTCACTC 57.586 45.455 3.32 2.90 46.20 3.51
6491 7148 5.567423 GCAAACAAAAGATAGAATGTGGCCT 60.567 40.000 3.32 0.00 0.00 5.19
6492 7149 4.627035 GCAAACAAAAGATAGAATGTGGCC 59.373 41.667 0.00 0.00 0.00 5.36
6500 7157 8.682710 ACAAACAGTAAGCAAACAAAAGATAGA 58.317 29.630 0.00 0.00 0.00 1.98
6508 7165 8.271312 AGTAGTAACAAACAGTAAGCAAACAA 57.729 30.769 0.00 0.00 0.00 2.83
6513 7170 9.419297 CAATCTAGTAGTAACAAACAGTAAGCA 57.581 33.333 0.00 0.00 0.00 3.91
6514 7171 9.420551 ACAATCTAGTAGTAACAAACAGTAAGC 57.579 33.333 0.00 0.00 0.00 3.09
6589 7492 7.876068 TGTTCACCAAAGGTAGTAGTTAATCAG 59.124 37.037 0.00 0.00 32.11 2.90
6604 7507 4.287238 ACTAAGCGTTTGTTCACCAAAG 57.713 40.909 0.00 0.00 43.52 2.77
6609 7512 4.778904 TGCAATACTAAGCGTTTGTTCAC 58.221 39.130 0.00 0.00 0.00 3.18
6618 7521 5.398169 TCAAATTGGTTGCAATACTAAGCG 58.602 37.500 0.59 0.00 37.13 4.68
6663 7566 2.747855 GGTTCCGGCTGCAAGAGG 60.748 66.667 0.50 0.00 34.07 3.69
6674 7577 2.663196 GGTGGGTGAGAGGTTCCG 59.337 66.667 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.