Multiple sequence alignment - TraesCS3B01G375700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G375700 chr3B 100.000 2637 0 0 1 2637 590622613 590625249 0.000000e+00 4870.0
1 TraesCS3B01G375700 chr3B 86.220 791 71 22 1284 2056 591365381 591366151 0.000000e+00 822.0
2 TraesCS3B01G375700 chr3B 88.773 481 40 9 799 1268 591364853 591365330 7.190000e-161 577.0
3 TraesCS3B01G375700 chr3B 99.180 244 2 0 2394 2637 776516894 776516651 9.840000e-120 440.0
4 TraesCS3B01G375700 chr3B 99.177 243 2 0 2394 2636 742562352 742562110 3.540000e-119 438.0
5 TraesCS3B01G375700 chr3B 99.180 244 1 1 2395 2637 776516208 776515965 3.540000e-119 438.0
6 TraesCS3B01G375700 chr3B 100.000 167 0 0 2825 2991 590625437 590625603 2.900000e-80 309.0
7 TraesCS3B01G375700 chr3B 88.889 99 11 0 692 790 752234366 752234464 4.050000e-24 122.0
8 TraesCS3B01G375700 chr3B 92.771 83 6 0 612 694 407410846 407410928 1.460000e-23 121.0
9 TraesCS3B01G375700 chr3B 90.909 88 8 0 610 697 675007346 675007259 5.240000e-23 119.0
10 TraesCS3B01G375700 chr3D 91.678 1538 80 24 792 2292 449540537 449542063 0.000000e+00 2087.0
11 TraesCS3B01G375700 chr3D 86.202 732 70 10 1284 2003 449737750 449738462 0.000000e+00 763.0
12 TraesCS3B01G375700 chr3D 87.633 469 41 11 813 1268 449737242 449737706 2.040000e-146 529.0
13 TraesCS3B01G375700 chr3D 89.744 234 22 2 387 620 449540313 449540544 6.270000e-77 298.0
14 TraesCS3B01G375700 chr3D 81.439 264 48 1 116 379 129015161 129014899 6.490000e-52 215.0
15 TraesCS3B01G375700 chr3D 82.443 262 26 7 1 242 449539994 449540255 8.400000e-51 211.0
16 TraesCS3B01G375700 chr3D 94.340 106 5 1 2294 2398 253142100 253141995 8.580000e-36 161.0
17 TraesCS3B01G375700 chr3D 91.566 83 7 0 612 694 14382739 14382821 6.780000e-22 115.0
18 TraesCS3B01G375700 chr3D 87.619 105 5 4 695 791 327629426 327629322 6.780000e-22 115.0
19 TraesCS3B01G375700 chr3D 80.537 149 28 1 116 264 129015317 129015170 2.440000e-21 113.0
20 TraesCS3B01G375700 chr3A 89.940 1501 97 13 792 2262 593176545 593178021 0.000000e+00 1886.0
21 TraesCS3B01G375700 chr3A 85.600 1250 98 37 818 2003 593339740 593340971 0.000000e+00 1236.0
22 TraesCS3B01G375700 chr3A 80.435 644 68 19 1 620 593175943 593176552 3.540000e-119 438.0
23 TraesCS3B01G375700 chr3A 97.546 163 4 0 2825 2987 51441496 51441334 2.270000e-71 279.0
24 TraesCS3B01G375700 chr3A 96.914 162 5 0 2826 2987 732869400 732869239 3.800000e-69 272.0
25 TraesCS3B01G375700 chr3A 88.991 109 6 3 2884 2991 670841733 670841630 2.420000e-26 130.0
26 TraesCS3B01G375700 chr7B 99.180 244 2 0 2394 2637 135516918 135516675 9.840000e-120 440.0
27 TraesCS3B01G375700 chr7B 92.079 101 8 0 692 792 745408398 745408498 3.110000e-30 143.0
28 TraesCS3B01G375700 chr7B 90.909 88 8 0 610 697 655909461 655909374 5.240000e-23 119.0
29 TraesCS3B01G375700 chr7B 89.130 92 8 2 610 699 456730608 456730517 2.440000e-21 113.0
30 TraesCS3B01G375700 chr7B 80.702 114 22 0 257 370 706075523 706075636 4.110000e-14 89.8
31 TraesCS3B01G375700 chr7B 92.857 56 4 0 6 61 284016179 284016234 6.870000e-12 82.4
32 TraesCS3B01G375700 chr7A 99.177 243 2 0 2395 2637 666798385 666798627 3.540000e-119 438.0
33 TraesCS3B01G375700 chr5B 99.180 244 1 1 2395 2637 54502961 54502718 3.540000e-119 438.0
34 TraesCS3B01G375700 chr5B 92.771 83 6 0 615 697 590959686 590959604 1.460000e-23 121.0
35 TraesCS3B01G375700 chr5B 92.683 82 6 0 613 694 706688291 706688372 5.240000e-23 119.0
36 TraesCS3B01G375700 chr5B 86.869 99 9 4 599 694 403644460 403644557 1.130000e-19 108.0
37 TraesCS3B01G375700 chr2B 98.406 251 1 2 2388 2637 305758537 305758289 3.540000e-119 438.0
38 TraesCS3B01G375700 chr2B 98.387 248 3 1 2390 2637 355568656 355568410 4.580000e-118 435.0
39 TraesCS3B01G375700 chr2B 97.255 255 5 1 2385 2637 217830952 217831206 5.920000e-117 431.0
40 TraesCS3B01G375700 chr2B 91.111 135 7 3 2861 2991 118591035 118591168 8.520000e-41 178.0
41 TraesCS3B01G375700 chr2B 90.000 130 5 3 2861 2987 256958441 256958317 8.580000e-36 161.0
42 TraesCS3B01G375700 chr2B 91.765 85 7 0 610 694 709607436 709607520 5.240000e-23 119.0
43 TraesCS3B01G375700 chr2B 85.526 76 5 4 24 94 57308744 57308818 1.150000e-09 75.0
44 TraesCS3B01G375700 chr2B 96.970 33 1 0 2825 2857 726155951 726155919 4.170000e-04 56.5
45 TraesCS3B01G375700 chrUn 97.546 163 4 0 2825 2987 473520976 473520814 2.270000e-71 279.0
46 TraesCS3B01G375700 chrUn 90.000 130 5 3 2861 2987 441640472 441640596 8.580000e-36 161.0
47 TraesCS3B01G375700 chrUn 91.566 83 7 0 615 697 9753386 9753304 6.780000e-22 115.0
48 TraesCS3B01G375700 chrUn 90.244 82 8 0 613 694 308124227 308124308 1.130000e-19 108.0
49 TraesCS3B01G375700 chrUn 89.873 79 8 0 615 693 2600502 2600424 5.270000e-18 102.0
50 TraesCS3B01G375700 chrUn 88.235 85 10 0 613 697 66420038 66419954 5.270000e-18 102.0
51 TraesCS3B01G375700 chrUn 88.235 85 10 0 613 697 167240811 167240727 5.270000e-18 102.0
52 TraesCS3B01G375700 chrUn 87.209 86 11 0 612 697 320628424 320628339 6.820000e-17 99.0
53 TraesCS3B01G375700 chrUn 87.059 85 11 0 613 697 69154142 69154058 2.450000e-16 97.1
54 TraesCS3B01G375700 chrUn 87.059 85 11 0 613 697 102977423 102977339 2.450000e-16 97.1
55 TraesCS3B01G375700 chrUn 87.805 82 10 0 613 694 112721007 112721088 2.450000e-16 97.1
56 TraesCS3B01G375700 chrUn 83.810 105 9 5 695 791 125976245 125976141 3.170000e-15 93.5
57 TraesCS3B01G375700 chrUn 100.000 28 0 0 744 771 21855677 21855650 5.000000e-03 52.8
58 TraesCS3B01G375700 chrUn 100.000 28 0 0 744 771 114569263 114569236 5.000000e-03 52.8
59 TraesCS3B01G375700 chr6B 96.914 162 5 0 2826 2987 715587391 715587552 3.800000e-69 272.0
60 TraesCS3B01G375700 chr6B 91.011 89 8 0 606 694 104223368 104223456 1.460000e-23 121.0
61 TraesCS3B01G375700 chr4D 79.848 263 53 0 117 379 67806332 67806070 3.040000e-45 193.0
62 TraesCS3B01G375700 chr4D 92.771 83 6 0 612 694 329299941 329300023 1.460000e-23 121.0
63 TraesCS3B01G375700 chr4D 91.463 82 7 0 613 694 403626036 403626117 2.440000e-21 113.0
64 TraesCS3B01G375700 chr4D 90.361 83 8 0 612 694 499689310 499689392 3.150000e-20 110.0
65 TraesCS3B01G375700 chr4D 89.412 85 9 0 613 697 99349520 99349436 1.130000e-19 108.0
66 TraesCS3B01G375700 chr4D 89.412 85 9 0 613 697 482688335 482688251 1.130000e-19 108.0
67 TraesCS3B01G375700 chr4D 85.185 108 8 4 692 791 104375012 104375119 1.470000e-18 104.0
68 TraesCS3B01G375700 chr4D 85.185 108 8 3 692 791 342380312 342380419 1.470000e-18 104.0
69 TraesCS3B01G375700 chr4D 88.095 84 6 2 692 771 330657386 330657469 2.450000e-16 97.1
70 TraesCS3B01G375700 chr4B 98.131 107 2 0 2825 2931 175080985 175080879 1.420000e-43 187.0
71 TraesCS3B01G375700 chr4B 91.566 83 7 0 709 791 611429232 611429314 6.780000e-22 115.0
72 TraesCS3B01G375700 chr4B 90.588 85 8 0 613 697 563881364 563881280 2.440000e-21 113.0
73 TraesCS3B01G375700 chr4B 90.588 85 8 0 613 697 581212948 581212864 2.440000e-21 113.0
74 TraesCS3B01G375700 chr4B 90.588 85 8 0 613 697 609812997 609812913 2.440000e-21 113.0
75 TraesCS3B01G375700 chr4B 86.667 105 6 3 695 791 174898244 174898140 3.150000e-20 110.0
76 TraesCS3B01G375700 chr4B 86.667 105 6 3 695 791 425095401 425095297 3.150000e-20 110.0
77 TraesCS3B01G375700 chr4B 89.412 85 9 0 610 694 59448222 59448306 1.130000e-19 108.0
78 TraesCS3B01G375700 chr4B 89.412 85 9 0 610 694 101148501 101148585 1.130000e-19 108.0
79 TraesCS3B01G375700 chr4B 85.714 105 7 4 695 791 420067051 420066947 1.470000e-18 104.0
80 TraesCS3B01G375700 chr4B 86.000 100 6 6 695 788 365339007 365338910 1.900000e-17 100.0
81 TraesCS3B01G375700 chr6A 91.538 130 8 1 2861 2987 155800202 155800073 3.060000e-40 176.0
82 TraesCS3B01G375700 chr6A 91.818 110 6 2 2292 2398 524584360 524584251 1.860000e-32 150.0
83 TraesCS3B01G375700 chr1B 83.152 184 28 3 612 793 648063711 648063893 6.630000e-37 165.0
84 TraesCS3B01G375700 chr1B 90.099 101 10 0 692 792 99080260 99080360 6.730000e-27 132.0
85 TraesCS3B01G375700 chr1B 90.698 86 8 0 612 697 58567775 58567690 6.780000e-22 115.0
86 TraesCS3B01G375700 chr1B 90.698 86 8 0 612 697 583289607 583289522 6.780000e-22 115.0
87 TraesCS3B01G375700 chr1B 90.588 85 8 0 610 694 355920607 355920691 2.440000e-21 113.0
88 TraesCS3B01G375700 chr1B 89.773 88 9 0 610 697 373901507 373901420 2.440000e-21 113.0
89 TraesCS3B01G375700 chr1B 89.412 85 9 0 613 697 348605757 348605673 1.130000e-19 108.0
90 TraesCS3B01G375700 chr5D 88.462 104 9 1 692 792 359271967 359272070 4.050000e-24 122.0
91 TraesCS3B01G375700 chr5D 90.588 85 8 0 613 697 432046261 432046345 2.440000e-21 113.0
92 TraesCS3B01G375700 chr5D 86.111 108 7 3 692 791 292512055 292512162 3.150000e-20 110.0
93 TraesCS3B01G375700 chr5D 100.000 29 0 0 514 542 258648398 258648426 1.000000e-03 54.7
94 TraesCS3B01G375700 chr2D 91.667 84 7 0 709 792 367986992 367986909 1.880000e-22 117.0
95 TraesCS3B01G375700 chr2D 86.667 105 6 3 695 791 550341896 550341792 3.150000e-20 110.0
96 TraesCS3B01G375700 chr1A 89.773 88 9 0 610 697 171460002 171459915 2.440000e-21 113.0
97 TraesCS3B01G375700 chr1A 89.412 85 9 0 708 792 516066390 516066306 1.130000e-19 108.0
98 TraesCS3B01G375700 chr1D 90.244 82 7 1 613 694 401762683 401762763 4.080000e-19 106.0
99 TraesCS3B01G375700 chr1D 88.372 86 10 0 612 697 260957675 260957590 1.470000e-18 104.0
100 TraesCS3B01G375700 chr1D 82.407 108 12 5 671 771 182290495 182290602 1.480000e-13 87.9
101 TraesCS3B01G375700 chr6D 85.185 108 8 3 692 791 154101971 154102078 1.470000e-18 104.0
102 TraesCS3B01G375700 chr6D 83.929 112 15 3 682 790 364229028 364229139 1.470000e-18 104.0
103 TraesCS3B01G375700 chr6D 89.024 82 9 0 613 694 15786084 15786165 5.270000e-18 102.0
104 TraesCS3B01G375700 chr6D 91.781 73 5 1 721 792 265898802 265898730 1.900000e-17 100.0
105 TraesCS3B01G375700 chr6D 87.952 83 10 0 612 694 77124521 77124603 6.820000e-17 99.0
106 TraesCS3B01G375700 chr6D 87.952 83 10 0 612 694 444359647 444359729 6.820000e-17 99.0
107 TraesCS3B01G375700 chr6D 88.889 81 5 2 695 771 177409643 177409723 2.450000e-16 97.1
108 TraesCS3B01G375700 chr6D 88.095 84 6 2 692 771 232599180 232599263 2.450000e-16 97.1
109 TraesCS3B01G375700 chr6D 84.211 95 10 4 682 771 226902275 226902181 1.480000e-13 87.9
110 TraesCS3B01G375700 chr6D 80.952 84 9 5 695 771 104900736 104900653 3.220000e-05 60.2
111 TraesCS3B01G375700 chr5A 81.818 99 17 1 376 473 466579288 466579386 6.870000e-12 82.4
112 TraesCS3B01G375700 chr2A 100.000 34 0 0 2827 2860 758959370 758959403 2.490000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G375700 chr3B 590622613 590625603 2990 False 2589.500000 4870 100.0000 1 2991 2 chr3B.!!$F3 2990
1 TraesCS3B01G375700 chr3B 591364853 591366151 1298 False 699.500000 822 87.4965 799 2056 2 chr3B.!!$F4 1257
2 TraesCS3B01G375700 chr3B 776515965 776516894 929 True 439.000000 440 99.1800 2394 2637 2 chr3B.!!$R3 243
3 TraesCS3B01G375700 chr3D 449539994 449542063 2069 False 865.333333 2087 87.9550 1 2292 3 chr3D.!!$F2 2291
4 TraesCS3B01G375700 chr3D 449737242 449738462 1220 False 646.000000 763 86.9175 813 2003 2 chr3D.!!$F3 1190
5 TraesCS3B01G375700 chr3A 593339740 593340971 1231 False 1236.000000 1236 85.6000 818 2003 1 chr3A.!!$F1 1185
6 TraesCS3B01G375700 chr3A 593175943 593178021 2078 False 1162.000000 1886 85.1875 1 2262 2 chr3A.!!$F2 2261

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 654 0.109342 CTTAGGCTGGCCATAGTGGG 59.891 60.0 5.51 0.0 38.19 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 2436 0.456221 CCGCTCCATAGACACGTTCT 59.544 55.0 0.0 0.0 38.51 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 1.645455 CGCCGCCATCATTGAAGAG 59.355 57.895 0.00 0.00 0.00 2.85
53 55 6.372659 GCCATCATTGAAGAGAAGTAGAACAA 59.627 38.462 0.00 0.00 0.00 2.83
54 56 7.625185 GCCATCATTGAAGAGAAGTAGAACAAC 60.625 40.741 0.00 0.00 0.00 3.32
61 63 2.231721 GAGAAGTAGAACAACGGAGGCT 59.768 50.000 0.00 0.00 0.00 4.58
64 66 1.080093 TAGAACAACGGAGGCTGCG 60.080 57.895 27.12 27.12 37.19 5.18
80 83 2.409870 GCGGCTTGGGTCCATGAAG 61.410 63.158 7.02 0.00 0.00 3.02
109 112 4.807039 GGTGTCGCCGGCGTACAT 62.807 66.667 44.16 0.00 40.74 2.29
114 117 2.105528 CGCCGGCGTACATAACCT 59.894 61.111 39.71 0.00 34.35 3.50
120 123 1.535437 CGGCGTACATAACCTGAGGAC 60.535 57.143 4.99 0.00 0.00 3.85
121 124 1.479323 GGCGTACATAACCTGAGGACA 59.521 52.381 4.99 0.00 0.00 4.02
122 125 2.537401 GCGTACATAACCTGAGGACAC 58.463 52.381 4.99 0.00 0.00 3.67
123 126 2.737679 GCGTACATAACCTGAGGACACC 60.738 54.545 4.99 0.00 0.00 4.16
124 127 2.159142 CGTACATAACCTGAGGACACCC 60.159 54.545 4.99 0.00 0.00 4.61
127 130 2.572104 ACATAACCTGAGGACACCCTTC 59.428 50.000 4.99 0.00 44.53 3.46
132 154 1.229529 TGAGGACACCCTTCCCCTC 60.230 63.158 0.00 0.00 44.53 4.30
135 157 1.850755 GGACACCCTTCCCCTCCAA 60.851 63.158 0.00 0.00 0.00 3.53
137 159 2.138453 GACACCCTTCCCCTCCAACC 62.138 65.000 0.00 0.00 0.00 3.77
151 173 3.134458 CTCCAACCGAAGCATATTCCTC 58.866 50.000 0.00 0.00 0.00 3.71
170 192 4.963878 GGTGCCACTCCGATGAAT 57.036 55.556 0.00 0.00 0.00 2.57
213 235 2.203480 AGGCCCTTTGCGCTGAAA 60.203 55.556 9.73 0.00 42.61 2.69
223 245 4.814234 CCTTTGCGCTGAAACATATACCTA 59.186 41.667 9.73 0.00 0.00 3.08
233 255 4.910458 AACATATACCTATGGGGCTCAC 57.090 45.455 0.00 0.00 39.29 3.51
242 264 3.311110 GGGGCTCACGACAGTCCA 61.311 66.667 10.52 0.00 40.32 4.02
243 265 2.741092 GGGCTCACGACAGTCCAA 59.259 61.111 4.40 0.00 38.16 3.53
244 266 1.374758 GGGCTCACGACAGTCCAAG 60.375 63.158 4.40 0.00 38.16 3.61
245 267 1.374758 GGCTCACGACAGTCCAAGG 60.375 63.158 0.00 0.00 0.00 3.61
246 268 1.666011 GCTCACGACAGTCCAAGGA 59.334 57.895 0.00 0.00 0.00 3.36
247 269 0.389166 GCTCACGACAGTCCAAGGAG 60.389 60.000 0.00 0.00 0.00 3.69
248 270 0.962489 CTCACGACAGTCCAAGGAGT 59.038 55.000 0.00 0.00 0.00 3.85
265 287 2.039787 TGGGCTACCGGACATGGA 59.960 61.111 9.46 0.00 40.75 3.41
271 293 2.421529 GGCTACCGGACATGGAGAAAAT 60.422 50.000 9.46 0.00 0.00 1.82
289 311 6.226787 AGAAAATAATAGAGATCTGCCGTGG 58.773 40.000 0.00 0.00 0.00 4.94
311 333 2.625737 CGACCGTAGACTAGTCAAGGA 58.374 52.381 27.18 9.61 0.00 3.36
316 338 6.190346 ACCGTAGACTAGTCAAGGATATCT 57.810 41.667 27.18 8.88 0.00 1.98
317 339 5.998981 ACCGTAGACTAGTCAAGGATATCTG 59.001 44.000 27.18 9.26 0.00 2.90
318 340 5.106475 CCGTAGACTAGTCAAGGATATCTGC 60.106 48.000 24.44 3.62 0.00 4.26
337 359 1.000955 GCGTCGTGGGAATGGATATCT 59.999 52.381 2.05 0.00 0.00 1.98
346 368 3.939837 ATGGATATCTGCCGGCGCG 62.940 63.158 23.90 15.91 38.08 6.86
362 384 0.874390 CGCGGGCCGTATACTAGTTA 59.126 55.000 28.82 0.00 0.00 2.24
370 392 6.037610 CGGGCCGTATACTAGTTATACCTTAG 59.962 46.154 19.97 0.00 39.64 2.18
371 393 6.887002 GGGCCGTATACTAGTTATACCTTAGT 59.113 42.308 0.00 0.00 39.64 2.24
372 394 7.066404 GGGCCGTATACTAGTTATACCTTAGTC 59.934 44.444 0.00 0.00 39.64 2.59
373 395 7.066404 GGCCGTATACTAGTTATACCTTAGTCC 59.934 44.444 0.00 0.00 39.64 3.85
374 396 7.826744 GCCGTATACTAGTTATACCTTAGTCCT 59.173 40.741 0.00 0.00 39.64 3.85
375 397 9.160496 CCGTATACTAGTTATACCTTAGTCCTG 57.840 40.741 0.00 0.00 39.64 3.86
376 398 9.717942 CGTATACTAGTTATACCTTAGTCCTGT 57.282 37.037 0.00 0.00 39.64 4.00
405 427 5.982890 ATCATCCGGTTTGAATGAAGTTT 57.017 34.783 12.66 0.00 0.00 2.66
410 432 3.067461 CCGGTTTGAATGAAGTTTGTCCA 59.933 43.478 0.00 0.00 0.00 4.02
418 441 8.558973 TTGAATGAAGTTTGTCCAATTTGTTT 57.441 26.923 0.00 0.00 0.00 2.83
470 493 4.241555 ATGTCCGGCTCCGCATCC 62.242 66.667 0.00 0.00 38.24 3.51
506 529 2.230508 GTCCCGTCCGCTGATGAATATA 59.769 50.000 0.00 0.00 0.00 0.86
514 537 4.464244 TCCGCTGATGAATATAGGAGGAAG 59.536 45.833 0.00 0.00 0.00 3.46
524 548 2.143231 TAGGAGGAAGTTTGGGGGTT 57.857 50.000 0.00 0.00 0.00 4.11
553 577 2.371510 GAGATGCCCTTATCTCTTGGCT 59.628 50.000 8.17 0.00 46.12 4.75
555 579 2.425143 TGCCCTTATCTCTTGGCTTG 57.575 50.000 0.00 0.00 44.32 4.01
566 590 5.041191 TCTCTTGGCTTGACTTTCTCTTT 57.959 39.130 0.00 0.00 0.00 2.52
598 622 1.834540 AGGGAAAGGAAGGGTTGAGT 58.165 50.000 0.00 0.00 0.00 3.41
606 630 1.346722 GGAAGGGTTGAGTTCCGAGAA 59.653 52.381 0.00 0.00 33.21 2.87
616 640 3.447586 TGAGTTCCGAGAATGGACTTAGG 59.552 47.826 0.00 0.00 37.89 2.69
617 641 2.168728 AGTTCCGAGAATGGACTTAGGC 59.831 50.000 0.00 0.00 37.89 3.93
618 642 2.160721 TCCGAGAATGGACTTAGGCT 57.839 50.000 0.00 0.00 31.53 4.58
619 643 1.757118 TCCGAGAATGGACTTAGGCTG 59.243 52.381 0.00 0.00 31.53 4.85
620 644 1.202580 CCGAGAATGGACTTAGGCTGG 60.203 57.143 0.00 0.00 0.00 4.85
621 645 1.808133 CGAGAATGGACTTAGGCTGGC 60.808 57.143 0.00 0.00 0.00 4.85
622 646 0.548510 AGAATGGACTTAGGCTGGCC 59.451 55.000 3.00 3.00 0.00 5.36
623 647 0.255890 GAATGGACTTAGGCTGGCCA 59.744 55.000 14.39 4.71 38.92 5.36
624 648 0.929244 AATGGACTTAGGCTGGCCAT 59.071 50.000 5.51 6.39 40.88 4.40
625 649 1.819753 ATGGACTTAGGCTGGCCATA 58.180 50.000 10.39 0.00 37.57 2.74
626 650 1.131638 TGGACTTAGGCTGGCCATAG 58.868 55.000 5.51 11.93 38.92 2.23
627 651 1.132500 GGACTTAGGCTGGCCATAGT 58.868 55.000 5.51 14.82 38.92 2.12
628 652 1.202698 GGACTTAGGCTGGCCATAGTG 60.203 57.143 5.51 0.00 38.92 2.74
629 653 0.839946 ACTTAGGCTGGCCATAGTGG 59.160 55.000 5.51 0.00 41.55 4.00
630 654 0.109342 CTTAGGCTGGCCATAGTGGG 59.891 60.000 5.51 0.00 38.19 4.61
631 655 1.352622 TTAGGCTGGCCATAGTGGGG 61.353 60.000 5.51 0.00 38.19 4.96
632 656 4.209866 GGCTGGCCATAGTGGGGG 62.210 72.222 5.51 0.00 38.19 5.40
633 657 3.420482 GCTGGCCATAGTGGGGGT 61.420 66.667 5.51 0.00 38.19 4.95
634 658 2.076184 GCTGGCCATAGTGGGGGTA 61.076 63.158 5.51 0.00 38.19 3.69
635 659 1.641552 GCTGGCCATAGTGGGGGTAA 61.642 60.000 5.51 0.00 38.19 2.85
636 660 0.182775 CTGGCCATAGTGGGGGTAAC 59.817 60.000 5.51 0.00 38.19 2.50
637 661 0.550393 TGGCCATAGTGGGGGTAACA 60.550 55.000 0.00 0.00 38.19 2.41
638 662 0.850784 GGCCATAGTGGGGGTAACAT 59.149 55.000 0.00 0.00 38.19 2.71
639 663 2.059490 GGCCATAGTGGGGGTAACATA 58.941 52.381 0.00 0.00 38.19 2.29
640 664 2.444010 GGCCATAGTGGGGGTAACATAA 59.556 50.000 0.00 0.00 38.19 1.90
641 665 3.483421 GCCATAGTGGGGGTAACATAAC 58.517 50.000 0.00 0.00 38.19 1.89
642 666 3.749632 GCCATAGTGGGGGTAACATAACC 60.750 52.174 0.00 0.00 38.19 2.85
643 667 3.460340 CCATAGTGGGGGTAACATAACCA 59.540 47.826 0.00 0.00 41.67 3.67
644 668 4.445735 CCATAGTGGGGGTAACATAACCAG 60.446 50.000 0.00 0.00 41.67 4.00
645 669 2.639487 AGTGGGGGTAACATAACCAGT 58.361 47.619 0.00 0.00 41.67 4.00
646 670 3.805762 AGTGGGGGTAACATAACCAGTA 58.194 45.455 0.00 0.00 41.67 2.74
647 671 4.377134 AGTGGGGGTAACATAACCAGTAT 58.623 43.478 0.00 0.00 41.67 2.12
648 672 4.411212 AGTGGGGGTAACATAACCAGTATC 59.589 45.833 0.00 0.00 41.67 2.24
649 673 4.164604 GTGGGGGTAACATAACCAGTATCA 59.835 45.833 0.00 0.00 41.67 2.15
650 674 4.979039 TGGGGGTAACATAACCAGTATCAT 59.021 41.667 0.00 0.00 41.67 2.45
651 675 5.163141 TGGGGGTAACATAACCAGTATCATG 60.163 44.000 0.00 0.00 41.67 3.07
652 676 5.163131 GGGGGTAACATAACCAGTATCATGT 60.163 44.000 0.00 0.00 41.67 3.21
653 677 6.043474 GGGGGTAACATAACCAGTATCATGTA 59.957 42.308 0.00 0.00 41.67 2.29
654 678 6.932960 GGGGTAACATAACCAGTATCATGTAC 59.067 42.308 0.00 0.00 41.67 2.90
655 679 7.202066 GGGGTAACATAACCAGTATCATGTACT 60.202 40.741 0.00 0.00 41.67 2.73
656 680 8.208903 GGGTAACATAACCAGTATCATGTACTT 58.791 37.037 5.54 0.00 41.67 2.24
657 681 9.042008 GGTAACATAACCAGTATCATGTACTTG 57.958 37.037 2.36 2.36 39.50 3.16
658 682 9.042008 GTAACATAACCAGTATCATGTACTTGG 57.958 37.037 8.74 14.66 31.55 3.61
659 683 7.432148 ACATAACCAGTATCATGTACTTGGA 57.568 36.000 18.81 0.00 30.04 3.53
660 684 7.857456 ACATAACCAGTATCATGTACTTGGAA 58.143 34.615 18.81 12.36 30.04 3.53
661 685 7.769044 ACATAACCAGTATCATGTACTTGGAAC 59.231 37.037 18.81 7.39 30.04 3.62
662 686 6.374417 AACCAGTATCATGTACTTGGAACT 57.626 37.500 18.81 9.23 0.00 3.01
663 687 7.490657 AACCAGTATCATGTACTTGGAACTA 57.509 36.000 18.81 0.00 0.00 2.24
664 688 7.113658 ACCAGTATCATGTACTTGGAACTAG 57.886 40.000 18.81 8.07 0.00 2.57
665 689 6.668283 ACCAGTATCATGTACTTGGAACTAGT 59.332 38.462 18.81 8.57 0.00 2.57
666 690 7.837689 ACCAGTATCATGTACTTGGAACTAGTA 59.162 37.037 18.81 0.00 0.00 1.82
667 691 8.692710 CCAGTATCATGTACTTGGAACTAGTAA 58.307 37.037 8.74 0.00 30.42 2.24
670 694 9.865321 GTATCATGTACTTGGAACTAGTAAACA 57.135 33.333 8.74 0.00 30.42 2.83
672 696 8.771920 TCATGTACTTGGAACTAGTAAACATG 57.228 34.615 14.73 14.73 40.56 3.21
673 697 7.333423 TCATGTACTTGGAACTAGTAAACATGC 59.667 37.037 15.48 0.00 39.82 4.06
674 698 6.765403 TGTACTTGGAACTAGTAAACATGCT 58.235 36.000 0.00 0.00 30.42 3.79
675 699 7.221450 TGTACTTGGAACTAGTAAACATGCTT 58.779 34.615 0.00 0.00 30.42 3.91
676 700 7.717875 TGTACTTGGAACTAGTAAACATGCTTT 59.282 33.333 0.00 0.00 30.42 3.51
677 701 7.582667 ACTTGGAACTAGTAAACATGCTTTT 57.417 32.000 0.00 0.00 0.00 2.27
678 702 7.425606 ACTTGGAACTAGTAAACATGCTTTTG 58.574 34.615 0.00 0.00 0.00 2.44
679 703 6.952773 TGGAACTAGTAAACATGCTTTTGT 57.047 33.333 0.00 0.00 0.00 2.83
680 704 6.734137 TGGAACTAGTAAACATGCTTTTGTG 58.266 36.000 0.00 0.00 0.00 3.33
681 705 6.149633 GGAACTAGTAAACATGCTTTTGTGG 58.850 40.000 0.00 0.00 0.00 4.17
682 706 5.121221 ACTAGTAAACATGCTTTTGTGGC 57.879 39.130 0.00 0.00 0.00 5.01
683 707 4.582656 ACTAGTAAACATGCTTTTGTGGCA 59.417 37.500 0.00 0.00 44.05 4.92
684 708 3.981211 AGTAAACATGCTTTTGTGGCAG 58.019 40.909 0.00 0.00 43.15 4.85
685 709 2.243602 AAACATGCTTTTGTGGCAGG 57.756 45.000 0.00 0.00 45.30 4.85
689 713 3.598019 CATGCTTTTGTGGCAGGTAAT 57.402 42.857 0.00 0.00 43.15 1.89
690 714 3.929094 CATGCTTTTGTGGCAGGTAATT 58.071 40.909 0.00 0.00 43.15 1.40
691 715 5.070770 CATGCTTTTGTGGCAGGTAATTA 57.929 39.130 0.00 0.00 43.15 1.40
692 716 5.477510 CATGCTTTTGTGGCAGGTAATTAA 58.522 37.500 0.00 0.00 43.15 1.40
693 717 5.537300 TGCTTTTGTGGCAGGTAATTAAA 57.463 34.783 0.00 0.00 34.56 1.52
694 718 5.918608 TGCTTTTGTGGCAGGTAATTAAAA 58.081 33.333 0.00 0.00 34.56 1.52
695 719 6.349300 TGCTTTTGTGGCAGGTAATTAAAAA 58.651 32.000 0.00 0.00 34.56 1.94
724 748 8.884124 TGATCATGTATGATACCACTCTATGA 57.116 34.615 7.31 2.29 46.84 2.15
725 749 9.484806 TGATCATGTATGATACCACTCTATGAT 57.515 33.333 11.37 11.37 46.84 2.45
728 752 9.981460 TCATGTATGATACCACTCTATGATACT 57.019 33.333 0.00 0.00 29.37 2.12
733 757 8.829373 ATGATACCACTCTATGATACTATGCA 57.171 34.615 0.00 0.00 0.00 3.96
734 758 8.056407 TGATACCACTCTATGATACTATGCAC 57.944 38.462 0.00 0.00 0.00 4.57
735 759 7.890655 TGATACCACTCTATGATACTATGCACT 59.109 37.037 0.00 0.00 0.00 4.40
736 760 9.397280 GATACCACTCTATGATACTATGCACTA 57.603 37.037 0.00 0.00 0.00 2.74
737 761 9.928618 ATACCACTCTATGATACTATGCACTAT 57.071 33.333 0.00 0.00 0.00 2.12
738 762 8.657387 ACCACTCTATGATACTATGCACTATT 57.343 34.615 0.00 0.00 0.00 1.73
739 763 8.526978 ACCACTCTATGATACTATGCACTATTG 58.473 37.037 0.00 0.00 0.00 1.90
740 764 8.743714 CCACTCTATGATACTATGCACTATTGA 58.256 37.037 0.00 0.00 0.00 2.57
741 765 9.786105 CACTCTATGATACTATGCACTATTGAG 57.214 37.037 0.00 0.00 0.00 3.02
742 766 9.746457 ACTCTATGATACTATGCACTATTGAGA 57.254 33.333 0.00 0.00 0.00 3.27
756 780 9.301897 TGCACTATTGAGATAGTATCATACACT 57.698 33.333 12.66 6.53 45.17 3.55
936 966 1.332375 TCGACACCGAAAAGCCAAAAG 59.668 47.619 0.00 0.00 42.51 2.27
978 1011 3.502920 CAGTTCTAGTGCGAAGTTCGAT 58.497 45.455 28.66 15.12 43.74 3.59
997 1034 2.206576 TCTAGCACAGCAGAGTCTCA 57.793 50.000 1.94 0.00 0.00 3.27
1005 1042 0.908656 AGCAGAGTCTCACCATGGCT 60.909 55.000 13.04 0.00 0.00 4.75
1223 1260 4.740822 GGACCCTGGCGCCACATT 62.741 66.667 29.03 12.41 0.00 2.71
1268 1305 1.574428 CGTCCAAAAGAAGGTGCGG 59.426 57.895 0.00 0.00 0.00 5.69
1303 1377 2.043526 AGAATTCCTCCACCCTTTGCAT 59.956 45.455 0.65 0.00 0.00 3.96
1320 1401 3.777465 GCATGAGCATGAGTGTTTGAT 57.223 42.857 14.27 0.00 41.20 2.57
1329 1415 3.500448 TGAGTGTTTGATAGGTTGCCA 57.500 42.857 0.00 0.00 0.00 4.92
1376 1462 1.109920 GGCGCATAGAGAGGTCCAGA 61.110 60.000 10.83 0.00 0.00 3.86
1454 1540 1.412453 AAGCAACCACCCGAGGTACA 61.412 55.000 0.00 0.00 42.25 2.90
1515 1611 2.667724 GCAAGCTTGTTGATCAGAGCAC 60.668 50.000 26.55 8.88 34.82 4.40
1752 1849 3.220999 CTCGTGGAGCCGTTGGTGA 62.221 63.158 0.00 0.00 0.00 4.02
1851 1957 4.063967 TGACACCTCGCGGCGATT 62.064 61.111 26.60 13.15 34.61 3.34
2109 2226 3.862877 ACCTATAAGCATGCCATGTCA 57.137 42.857 15.66 0.00 0.00 3.58
2111 2228 3.117926 ACCTATAAGCATGCCATGTCACA 60.118 43.478 15.66 0.00 0.00 3.58
2112 2229 3.501062 CCTATAAGCATGCCATGTCACAG 59.499 47.826 15.66 2.19 0.00 3.66
2114 2231 0.968901 AAGCATGCCATGTCACAGGG 60.969 55.000 15.66 3.39 38.46 4.45
2116 2233 1.303948 CATGCCATGTCACAGGGGA 59.696 57.895 11.23 8.17 40.30 4.81
2117 2234 0.106369 CATGCCATGTCACAGGGGAT 60.106 55.000 10.07 10.07 46.45 3.85
2118 2235 0.632835 ATGCCATGTCACAGGGGATT 59.367 50.000 10.07 0.00 43.29 3.01
2120 2237 0.323725 GCCATGTCACAGGGGATTGT 60.324 55.000 11.23 0.00 35.67 2.71
2121 2238 1.755179 CCATGTCACAGGGGATTGTC 58.245 55.000 0.00 0.00 30.99 3.18
2122 2239 1.683011 CCATGTCACAGGGGATTGTCC 60.683 57.143 0.00 0.00 30.99 4.02
2123 2240 1.283029 CATGTCACAGGGGATTGTCCT 59.717 52.381 0.00 0.00 36.57 3.85
2133 2275 2.045926 ATTGTCCTGCGGTGAGGC 60.046 61.111 0.00 0.00 32.51 4.70
2160 2302 1.812571 AGGATCCAAAACGTCACATGC 59.187 47.619 15.82 0.00 0.00 4.06
2163 2305 0.466372 TCCAAAACGTCACATGCCCA 60.466 50.000 0.00 0.00 0.00 5.36
2167 2309 0.889186 AAACGTCACATGCCCAGGAC 60.889 55.000 0.00 0.00 0.00 3.85
2192 2340 2.572191 CGGCACAAGACGGTTATAGA 57.428 50.000 0.00 0.00 44.44 1.98
2197 2345 4.097589 GGCACAAGACGGTTATAGACTACT 59.902 45.833 0.00 0.00 0.00 2.57
2216 2364 1.064296 CAGGTCGACCCGATCTTCG 59.936 63.158 30.82 5.79 45.59 3.79
2242 2390 4.081198 GGGCCTTGAGATTCGATATCATCT 60.081 45.833 0.84 4.46 29.60 2.90
2267 2415 4.569162 ACATGAAGAACAACGAAGAACGAA 59.431 37.500 0.00 0.00 45.77 3.85
2268 2416 5.064198 ACATGAAGAACAACGAAGAACGAAA 59.936 36.000 0.00 0.00 45.77 3.46
2274 2422 5.350640 AGAACAACGAAGAACGAAAAAGTCT 59.649 36.000 0.00 0.00 45.77 3.24
2277 2425 7.064060 ACAACGAAGAACGAAAAAGTCTTTA 57.936 32.000 0.00 0.00 45.77 1.85
2281 2429 8.597144 ACGAAGAACGAAAAAGTCTTTAAAAG 57.403 30.769 0.00 0.00 45.77 2.27
2294 2442 9.687210 AAAGTCTTTAAAAGAAACAAAGAACGT 57.313 25.926 0.00 0.00 39.34 3.99
2295 2443 8.669394 AGTCTTTAAAAGAAACAAAGAACGTG 57.331 30.769 0.00 0.00 39.34 4.49
2296 2444 8.294577 AGTCTTTAAAAGAAACAAAGAACGTGT 58.705 29.630 0.00 0.00 39.34 4.49
2297 2445 8.572976 GTCTTTAAAAGAAACAAAGAACGTGTC 58.427 33.333 0.00 0.00 39.34 3.67
2298 2446 8.508875 TCTTTAAAAGAAACAAAGAACGTGTCT 58.491 29.630 0.00 0.00 35.83 3.41
2299 2447 9.763465 CTTTAAAAGAAACAAAGAACGTGTCTA 57.237 29.630 0.00 0.00 34.56 2.59
2301 2449 9.710979 TTAAAAGAAACAAAGAACGTGTCTATG 57.289 29.630 0.00 0.00 34.56 2.23
2302 2450 5.924475 AGAAACAAAGAACGTGTCTATGG 57.076 39.130 0.00 0.00 34.56 2.74
2303 2451 5.607477 AGAAACAAAGAACGTGTCTATGGA 58.393 37.500 0.00 0.00 34.56 3.41
2304 2452 5.696724 AGAAACAAAGAACGTGTCTATGGAG 59.303 40.000 0.00 0.00 34.56 3.86
2305 2453 3.326747 ACAAAGAACGTGTCTATGGAGC 58.673 45.455 0.00 0.00 34.56 4.70
2306 2454 2.279582 AAGAACGTGTCTATGGAGCG 57.720 50.000 0.00 2.24 34.56 5.03
2307 2455 0.456221 AGAACGTGTCTATGGAGCGG 59.544 55.000 7.64 0.00 33.56 5.52
2308 2456 1.146358 GAACGTGTCTATGGAGCGGC 61.146 60.000 7.64 0.00 0.00 6.53
2309 2457 2.279517 CGTGTCTATGGAGCGGCC 60.280 66.667 0.00 0.00 37.10 6.13
2310 2458 2.279517 GTGTCTATGGAGCGGCCG 60.280 66.667 24.05 24.05 40.66 6.13
2311 2459 3.536917 TGTCTATGGAGCGGCCGG 61.537 66.667 29.38 8.29 40.66 6.13
2312 2460 4.971125 GTCTATGGAGCGGCCGGC 62.971 72.222 29.38 21.18 40.66 6.13
2332 2480 2.907917 CTCCCTAGCCGTCCCGAG 60.908 72.222 0.00 0.00 0.00 4.63
2335 2483 3.905678 CCTAGCCGTCCCGAGCAG 61.906 72.222 0.00 0.00 0.00 4.24
2336 2484 4.577246 CTAGCCGTCCCGAGCAGC 62.577 72.222 0.00 0.00 0.00 5.25
2347 2495 3.070576 GAGCAGCCGGCCCAAAAT 61.071 61.111 26.15 0.00 46.50 1.82
2348 2496 1.752694 GAGCAGCCGGCCCAAAATA 60.753 57.895 26.15 0.00 46.50 1.40
2349 2497 1.728490 GAGCAGCCGGCCCAAAATAG 61.728 60.000 26.15 4.06 46.50 1.73
2350 2498 1.752694 GCAGCCGGCCCAAAATAGA 60.753 57.895 26.15 0.00 36.11 1.98
2351 2499 1.319614 GCAGCCGGCCCAAAATAGAA 61.320 55.000 26.15 0.00 36.11 2.10
2352 2500 1.402787 CAGCCGGCCCAAAATAGAAT 58.597 50.000 26.15 0.00 0.00 2.40
2353 2501 1.756538 CAGCCGGCCCAAAATAGAATT 59.243 47.619 26.15 0.00 0.00 2.17
2354 2502 2.168313 CAGCCGGCCCAAAATAGAATTT 59.832 45.455 26.15 0.00 0.00 1.82
2355 2503 2.837591 AGCCGGCCCAAAATAGAATTTT 59.162 40.909 26.15 0.00 0.00 1.82
2356 2504 3.263170 AGCCGGCCCAAAATAGAATTTTT 59.737 39.130 26.15 0.00 0.00 1.94
2893 3041 5.221661 GGTATGGTAAGGTCATAACTCAGGG 60.222 48.000 0.00 0.00 33.35 4.45
2908 3056 5.859205 ACTCAGGGAATTTTGAATATGGC 57.141 39.130 0.00 0.00 0.00 4.40
2912 3060 7.092757 ACTCAGGGAATTTTGAATATGGCAATT 60.093 33.333 0.00 0.00 0.00 2.32
2914 3062 8.936787 TCAGGGAATTTTGAATATGGCAATTAT 58.063 29.630 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.022242 CCTCCGTTGTTCTACTTCTCTTCA 60.022 45.833 0.00 0.00 0.00 3.02
42 44 2.338500 CAGCCTCCGTTGTTCTACTTC 58.662 52.381 0.00 0.00 0.00 3.01
61 63 3.203086 TTCATGGACCCAAGCCGCA 62.203 57.895 0.00 0.00 0.00 5.69
64 66 2.054453 GCCTTCATGGACCCAAGCC 61.054 63.158 0.00 0.00 38.35 4.35
109 112 1.652947 GGAAGGGTGTCCTCAGGTTA 58.347 55.000 0.00 0.00 44.07 2.85
114 117 1.229529 GAGGGGAAGGGTGTCCTCA 60.230 63.158 0.00 0.00 44.07 3.86
120 123 2.763902 GGTTGGAGGGGAAGGGTG 59.236 66.667 0.00 0.00 0.00 4.61
121 124 2.933834 CGGTTGGAGGGGAAGGGT 60.934 66.667 0.00 0.00 0.00 4.34
122 125 2.198304 CTTCGGTTGGAGGGGAAGGG 62.198 65.000 0.00 0.00 33.86 3.95
123 126 1.299976 CTTCGGTTGGAGGGGAAGG 59.700 63.158 0.00 0.00 33.86 3.46
124 127 1.377333 GCTTCGGTTGGAGGGGAAG 60.377 63.158 0.00 0.00 39.05 3.46
125 128 1.497309 ATGCTTCGGTTGGAGGGGAA 61.497 55.000 0.00 0.00 0.00 3.97
127 130 0.474184 ATATGCTTCGGTTGGAGGGG 59.526 55.000 0.00 0.00 0.00 4.79
132 154 2.222027 GGAGGAATATGCTTCGGTTGG 58.778 52.381 0.00 0.00 0.00 3.77
135 157 3.989104 CGGAGGAATATGCTTCGGT 57.011 52.632 0.00 0.00 32.79 4.69
169 191 3.511595 CATGTTCGGCAGCGGCAT 61.512 61.111 11.88 0.00 43.71 4.40
213 235 2.832129 CGTGAGCCCCATAGGTATATGT 59.168 50.000 0.00 0.00 37.65 2.29
223 245 2.660064 GGACTGTCGTGAGCCCCAT 61.660 63.158 1.07 0.00 0.00 4.00
242 264 1.988406 GTCCGGTAGCCCACTCCTT 60.988 63.158 0.00 0.00 0.00 3.36
243 265 2.363925 GTCCGGTAGCCCACTCCT 60.364 66.667 0.00 0.00 0.00 3.69
244 266 2.064581 ATGTCCGGTAGCCCACTCC 61.065 63.158 0.00 0.00 0.00 3.85
245 267 1.144057 CATGTCCGGTAGCCCACTC 59.856 63.158 0.00 0.00 0.00 3.51
246 268 2.367202 CCATGTCCGGTAGCCCACT 61.367 63.158 0.00 0.00 0.00 4.00
247 269 2.189521 CCATGTCCGGTAGCCCAC 59.810 66.667 0.00 0.00 0.00 4.61
248 270 2.039787 TCCATGTCCGGTAGCCCA 59.960 61.111 0.00 0.00 0.00 5.36
249 271 1.335132 TTCTCCATGTCCGGTAGCCC 61.335 60.000 0.00 0.00 0.00 5.19
250 272 0.539986 TTTCTCCATGTCCGGTAGCC 59.460 55.000 0.00 0.00 0.00 3.93
251 273 2.396590 TTTTCTCCATGTCCGGTAGC 57.603 50.000 0.00 0.00 0.00 3.58
252 274 7.667557 TCTATTATTTTCTCCATGTCCGGTAG 58.332 38.462 0.00 0.00 0.00 3.18
253 275 7.507956 TCTCTATTATTTTCTCCATGTCCGGTA 59.492 37.037 0.00 0.00 0.00 4.02
254 276 6.326583 TCTCTATTATTTTCTCCATGTCCGGT 59.673 38.462 0.00 0.00 0.00 5.28
255 277 6.759272 TCTCTATTATTTTCTCCATGTCCGG 58.241 40.000 0.00 0.00 0.00 5.14
256 278 8.310382 AGATCTCTATTATTTTCTCCATGTCCG 58.690 37.037 0.00 0.00 0.00 4.79
265 287 6.226787 CCACGGCAGATCTCTATTATTTTCT 58.773 40.000 0.00 0.00 0.00 2.52
271 293 1.618837 GGCCACGGCAGATCTCTATTA 59.381 52.381 10.83 0.00 44.11 0.98
289 311 1.063764 CTTGACTAGTCTACGGTCGGC 59.936 57.143 23.01 0.00 33.21 5.54
311 333 1.270305 CCATTCCCACGACGCAGATAT 60.270 52.381 0.00 0.00 0.00 1.63
316 338 0.756294 ATATCCATTCCCACGACGCA 59.244 50.000 0.00 0.00 0.00 5.24
317 339 1.000955 AGATATCCATTCCCACGACGC 59.999 52.381 0.00 0.00 0.00 5.19
318 340 2.677199 CAGATATCCATTCCCACGACG 58.323 52.381 0.00 0.00 0.00 5.12
346 368 6.887002 ACTAAGGTATAACTAGTATACGGCCC 59.113 42.308 0.00 0.00 43.89 5.80
370 392 5.407407 ACCGGATGATATTCATACAGGAC 57.593 43.478 9.46 0.00 37.57 3.85
371 393 6.042666 TCAAACCGGATGATATTCATACAGGA 59.957 38.462 9.46 0.00 37.57 3.86
372 394 6.230472 TCAAACCGGATGATATTCATACAGG 58.770 40.000 9.46 5.20 37.57 4.00
373 395 7.728847 TTCAAACCGGATGATATTCATACAG 57.271 36.000 9.46 0.00 37.57 2.74
374 396 7.936301 TCATTCAAACCGGATGATATTCATACA 59.064 33.333 9.46 0.00 37.57 2.29
375 397 8.322906 TCATTCAAACCGGATGATATTCATAC 57.677 34.615 9.46 0.00 37.20 2.39
376 398 8.916628 TTCATTCAAACCGGATGATATTCATA 57.083 30.769 9.46 0.00 37.20 2.15
377 399 7.503566 ACTTCATTCAAACCGGATGATATTCAT 59.496 33.333 9.46 0.00 40.34 2.57
378 400 6.828273 ACTTCATTCAAACCGGATGATATTCA 59.172 34.615 9.46 0.00 0.00 2.57
379 401 7.264373 ACTTCATTCAAACCGGATGATATTC 57.736 36.000 9.46 0.00 0.00 1.75
380 402 7.645058 AACTTCATTCAAACCGGATGATATT 57.355 32.000 9.46 1.12 0.00 1.28
381 403 7.122650 ACAAACTTCATTCAAACCGGATGATAT 59.877 33.333 9.46 6.22 0.00 1.63
382 404 6.432783 ACAAACTTCATTCAAACCGGATGATA 59.567 34.615 9.46 4.12 0.00 2.15
383 405 5.243730 ACAAACTTCATTCAAACCGGATGAT 59.756 36.000 9.46 0.10 0.00 2.45
384 406 4.582656 ACAAACTTCATTCAAACCGGATGA 59.417 37.500 9.46 9.84 0.00 2.92
385 407 4.870363 ACAAACTTCATTCAAACCGGATG 58.130 39.130 9.46 7.12 0.00 3.51
439 462 0.527817 GGACATCCAACGCTACTCGG 60.528 60.000 0.00 0.00 38.09 4.63
442 465 1.515954 CCGGACATCCAACGCTACT 59.484 57.895 0.00 0.00 35.14 2.57
470 493 1.588139 GGACCAGTCCGCGAATACG 60.588 63.158 8.23 0.00 40.36 3.06
471 494 4.414732 GGACCAGTCCGCGAATAC 57.585 61.111 8.23 2.36 40.36 1.89
493 516 5.398603 ACTTCCTCCTATATTCATCAGCG 57.601 43.478 0.00 0.00 0.00 5.18
506 529 1.993301 CTAACCCCCAAACTTCCTCCT 59.007 52.381 0.00 0.00 0.00 3.69
514 537 2.158579 TCTCCAACACTAACCCCCAAAC 60.159 50.000 0.00 0.00 0.00 2.93
524 548 4.298626 AGATAAGGGCATCTCCAACACTA 58.701 43.478 0.00 0.00 36.21 2.74
553 577 3.748048 CAGCCGATCAAAGAGAAAGTCAA 59.252 43.478 0.00 0.00 0.00 3.18
555 579 2.095053 GCAGCCGATCAAAGAGAAAGTC 59.905 50.000 0.00 0.00 0.00 3.01
566 590 0.251121 TTTCCCTTTGCAGCCGATCA 60.251 50.000 0.00 0.00 0.00 2.92
598 622 2.168521 CAGCCTAAGTCCATTCTCGGAA 59.831 50.000 0.00 0.00 36.62 4.30
606 630 1.701847 CTATGGCCAGCCTAAGTCCAT 59.298 52.381 13.05 0.00 40.35 3.41
616 640 1.641552 TTACCCCCACTATGGCCAGC 61.642 60.000 13.05 0.00 35.79 4.85
617 641 0.182775 GTTACCCCCACTATGGCCAG 59.817 60.000 13.05 0.00 35.79 4.85
618 642 0.550393 TGTTACCCCCACTATGGCCA 60.550 55.000 8.56 8.56 35.79 5.36
619 643 0.850784 ATGTTACCCCCACTATGGCC 59.149 55.000 0.00 0.00 35.79 5.36
620 644 3.483421 GTTATGTTACCCCCACTATGGC 58.517 50.000 0.00 0.00 35.79 4.40
621 645 3.460340 TGGTTATGTTACCCCCACTATGG 59.540 47.826 0.00 0.00 37.39 2.74
622 646 4.165372 ACTGGTTATGTTACCCCCACTATG 59.835 45.833 0.00 0.00 37.39 2.23
623 647 4.377134 ACTGGTTATGTTACCCCCACTAT 58.623 43.478 0.00 0.00 37.39 2.12
624 648 3.805762 ACTGGTTATGTTACCCCCACTA 58.194 45.455 0.00 0.00 37.39 2.74
625 649 2.639487 ACTGGTTATGTTACCCCCACT 58.361 47.619 0.00 0.00 37.39 4.00
626 650 4.164604 TGATACTGGTTATGTTACCCCCAC 59.835 45.833 0.00 0.00 37.39 4.61
627 651 4.372588 TGATACTGGTTATGTTACCCCCA 58.627 43.478 0.00 0.00 37.39 4.96
628 652 5.163131 ACATGATACTGGTTATGTTACCCCC 60.163 44.000 0.00 0.00 37.39 5.40
629 653 5.937111 ACATGATACTGGTTATGTTACCCC 58.063 41.667 0.00 0.00 37.39 4.95
630 654 7.732996 AGTACATGATACTGGTTATGTTACCC 58.267 38.462 0.00 0.00 37.39 3.69
631 655 9.042008 CAAGTACATGATACTGGTTATGTTACC 57.958 37.037 0.00 0.00 35.55 2.85
632 656 9.042008 CCAAGTACATGATACTGGTTATGTTAC 57.958 37.037 0.00 0.00 35.55 2.50
633 657 8.983789 TCCAAGTACATGATACTGGTTATGTTA 58.016 33.333 0.00 0.00 35.55 2.41
634 658 7.857456 TCCAAGTACATGATACTGGTTATGTT 58.143 34.615 0.00 0.00 35.55 2.71
635 659 7.432148 TCCAAGTACATGATACTGGTTATGT 57.568 36.000 0.00 0.00 37.51 2.29
636 660 7.987458 AGTTCCAAGTACATGATACTGGTTATG 59.013 37.037 0.00 0.00 0.00 1.90
637 661 8.090788 AGTTCCAAGTACATGATACTGGTTAT 57.909 34.615 0.00 0.00 0.00 1.89
638 662 7.490657 AGTTCCAAGTACATGATACTGGTTA 57.509 36.000 0.00 0.77 0.00 2.85
639 663 6.374417 AGTTCCAAGTACATGATACTGGTT 57.626 37.500 0.00 0.00 0.00 3.67
640 664 6.668283 ACTAGTTCCAAGTACATGATACTGGT 59.332 38.462 0.00 12.35 0.00 4.00
641 665 7.113658 ACTAGTTCCAAGTACATGATACTGG 57.886 40.000 0.00 11.92 0.00 4.00
644 668 9.865321 TGTTTACTAGTTCCAAGTACATGATAC 57.135 33.333 0.00 0.00 0.00 2.24
646 670 9.383519 CATGTTTACTAGTTCCAAGTACATGAT 57.616 33.333 0.00 0.00 41.86 2.45
647 671 7.333423 GCATGTTTACTAGTTCCAAGTACATGA 59.667 37.037 17.89 0.00 41.86 3.07
648 672 7.334421 AGCATGTTTACTAGTTCCAAGTACATG 59.666 37.037 0.00 8.65 42.03 3.21
649 673 7.394816 AGCATGTTTACTAGTTCCAAGTACAT 58.605 34.615 0.00 0.00 30.04 2.29
650 674 6.765403 AGCATGTTTACTAGTTCCAAGTACA 58.235 36.000 0.00 0.00 0.00 2.90
651 675 7.668525 AAGCATGTTTACTAGTTCCAAGTAC 57.331 36.000 0.00 0.00 0.00 2.73
652 676 8.564574 CAAAAGCATGTTTACTAGTTCCAAGTA 58.435 33.333 0.00 0.00 0.00 2.24
653 677 7.068226 ACAAAAGCATGTTTACTAGTTCCAAGT 59.932 33.333 0.00 0.00 0.00 3.16
654 678 7.379529 CACAAAAGCATGTTTACTAGTTCCAAG 59.620 37.037 0.00 0.00 0.00 3.61
655 679 7.199766 CACAAAAGCATGTTTACTAGTTCCAA 58.800 34.615 0.00 0.00 0.00 3.53
656 680 6.238897 CCACAAAAGCATGTTTACTAGTTCCA 60.239 38.462 0.00 0.00 0.00 3.53
657 681 6.149633 CCACAAAAGCATGTTTACTAGTTCC 58.850 40.000 0.00 0.00 0.00 3.62
658 682 5.629435 GCCACAAAAGCATGTTTACTAGTTC 59.371 40.000 0.00 0.00 0.00 3.01
659 683 5.068460 TGCCACAAAAGCATGTTTACTAGTT 59.932 36.000 0.00 0.00 34.69 2.24
660 684 4.582656 TGCCACAAAAGCATGTTTACTAGT 59.417 37.500 0.00 0.00 34.69 2.57
661 685 5.119931 TGCCACAAAAGCATGTTTACTAG 57.880 39.130 0.00 0.00 34.69 2.57
662 686 4.022416 CCTGCCACAAAAGCATGTTTACTA 60.022 41.667 0.00 0.00 40.04 1.82
663 687 3.243839 CCTGCCACAAAAGCATGTTTACT 60.244 43.478 0.00 0.00 40.04 2.24
664 688 3.059166 CCTGCCACAAAAGCATGTTTAC 58.941 45.455 0.00 0.00 40.04 2.01
665 689 2.697751 ACCTGCCACAAAAGCATGTTTA 59.302 40.909 0.00 0.00 40.04 2.01
666 690 1.485895 ACCTGCCACAAAAGCATGTTT 59.514 42.857 0.00 0.00 40.04 2.83
667 691 1.122227 ACCTGCCACAAAAGCATGTT 58.878 45.000 0.00 0.00 40.04 2.71
668 692 1.993956 TACCTGCCACAAAAGCATGT 58.006 45.000 0.00 0.00 41.21 3.21
669 693 3.598019 ATTACCTGCCACAAAAGCATG 57.402 42.857 0.00 0.00 40.04 4.06
670 694 5.736951 TTAATTACCTGCCACAAAAGCAT 57.263 34.783 0.00 0.00 40.04 3.79
671 695 5.537300 TTTAATTACCTGCCACAAAAGCA 57.463 34.783 0.00 0.00 38.82 3.91
672 696 6.852858 TTTTTAATTACCTGCCACAAAAGC 57.147 33.333 0.00 0.00 0.00 3.51
698 722 9.484806 TCATAGAGTGGTATCATACATGATCAT 57.515 33.333 7.96 1.18 43.72 2.45
699 723 8.884124 TCATAGAGTGGTATCATACATGATCA 57.116 34.615 7.96 0.00 43.72 2.92
702 726 9.981460 AGTATCATAGAGTGGTATCATACATGA 57.019 33.333 0.00 0.00 41.70 3.07
707 731 9.920946 TGCATAGTATCATAGAGTGGTATCATA 57.079 33.333 0.00 0.00 0.00 2.15
708 732 8.690884 GTGCATAGTATCATAGAGTGGTATCAT 58.309 37.037 0.00 0.00 0.00 2.45
709 733 7.890655 AGTGCATAGTATCATAGAGTGGTATCA 59.109 37.037 0.00 0.00 0.00 2.15
710 734 8.287439 AGTGCATAGTATCATAGAGTGGTATC 57.713 38.462 0.00 0.00 0.00 2.24
711 735 9.928618 ATAGTGCATAGTATCATAGAGTGGTAT 57.071 33.333 0.00 0.00 0.00 2.73
712 736 9.755122 AATAGTGCATAGTATCATAGAGTGGTA 57.245 33.333 0.00 0.00 0.00 3.25
713 737 8.526978 CAATAGTGCATAGTATCATAGAGTGGT 58.473 37.037 0.00 0.00 0.00 4.16
714 738 8.743714 TCAATAGTGCATAGTATCATAGAGTGG 58.256 37.037 0.00 0.00 0.00 4.00
715 739 9.786105 CTCAATAGTGCATAGTATCATAGAGTG 57.214 37.037 0.00 0.00 0.00 3.51
716 740 9.746457 TCTCAATAGTGCATAGTATCATAGAGT 57.254 33.333 0.00 0.00 0.00 3.24
730 754 9.301897 AGTGTATGATACTATCTCAATAGTGCA 57.698 33.333 4.03 6.81 46.07 4.57
770 794 9.451002 GCTAAGGAGTATCATATACTAGTGTCA 57.549 37.037 5.39 0.00 36.25 3.58
771 795 9.675464 AGCTAAGGAGTATCATATACTAGTGTC 57.325 37.037 5.39 0.00 36.25 3.67
772 796 9.456147 CAGCTAAGGAGTATCATATACTAGTGT 57.544 37.037 5.39 0.39 36.25 3.55
773 797 9.456147 ACAGCTAAGGAGTATCATATACTAGTG 57.544 37.037 5.39 0.00 36.25 2.74
774 798 9.675464 GACAGCTAAGGAGTATCATATACTAGT 57.325 37.037 0.00 0.00 36.25 2.57
775 799 8.822855 CGACAGCTAAGGAGTATCATATACTAG 58.177 40.741 0.00 0.00 36.25 2.57
776 800 7.280428 GCGACAGCTAAGGAGTATCATATACTA 59.720 40.741 0.00 0.00 41.01 1.82
777 801 6.094325 GCGACAGCTAAGGAGTATCATATACT 59.906 42.308 0.00 0.00 41.01 2.12
778 802 6.259638 GCGACAGCTAAGGAGTATCATATAC 58.740 44.000 0.00 0.00 41.01 1.47
779 803 5.064834 CGCGACAGCTAAGGAGTATCATATA 59.935 44.000 0.00 0.00 42.32 0.86
780 804 4.142578 CGCGACAGCTAAGGAGTATCATAT 60.143 45.833 0.00 0.00 42.32 1.78
781 805 3.188667 CGCGACAGCTAAGGAGTATCATA 59.811 47.826 0.00 0.00 42.32 2.15
782 806 2.030717 CGCGACAGCTAAGGAGTATCAT 60.031 50.000 0.00 0.00 42.32 2.45
783 807 1.333931 CGCGACAGCTAAGGAGTATCA 59.666 52.381 0.00 0.00 42.32 2.15
784 808 1.334243 ACGCGACAGCTAAGGAGTATC 59.666 52.381 15.93 0.00 42.32 2.24
785 809 1.390565 ACGCGACAGCTAAGGAGTAT 58.609 50.000 15.93 0.00 42.32 2.12
786 810 1.938577 CTACGCGACAGCTAAGGAGTA 59.061 52.381 15.93 0.00 42.32 2.59
787 811 0.733729 CTACGCGACAGCTAAGGAGT 59.266 55.000 15.93 0.00 42.32 3.85
788 812 0.029567 CCTACGCGACAGCTAAGGAG 59.970 60.000 15.93 0.00 42.24 3.69
789 813 0.679002 ACCTACGCGACAGCTAAGGA 60.679 55.000 15.93 0.00 42.24 3.36
790 814 0.248539 GACCTACGCGACAGCTAAGG 60.249 60.000 15.93 9.83 44.01 2.69
791 815 0.589229 CGACCTACGCGACAGCTAAG 60.589 60.000 15.93 0.00 42.32 2.18
792 816 1.426621 CGACCTACGCGACAGCTAA 59.573 57.895 15.93 0.00 42.32 3.09
793 817 3.095911 CGACCTACGCGACAGCTA 58.904 61.111 15.93 0.00 42.32 3.32
818 842 1.755783 GGGAAGCTGCATGGAAGGG 60.756 63.158 1.02 0.00 0.00 3.95
936 966 1.525619 GACAGTACGTGCACCAACTTC 59.474 52.381 12.15 10.74 0.00 3.01
978 1011 1.815613 GTGAGACTCTGCTGTGCTAGA 59.184 52.381 3.68 0.00 0.00 2.43
1033 1070 1.826921 GCCCCATGGTCATCAGCTG 60.827 63.158 11.73 7.63 0.00 4.24
1223 1260 4.161295 CCGCGGGAAGATGGCAGA 62.161 66.667 20.10 0.00 0.00 4.26
1268 1305 8.023706 GTGGAGGAATTCTTTCATTTGAACTAC 58.976 37.037 1.31 0.00 33.13 2.73
1303 1377 4.558226 ACCTATCAAACACTCATGCTCA 57.442 40.909 0.00 0.00 0.00 4.26
1313 1387 3.342377 TCGATGGCAACCTATCAAACA 57.658 42.857 0.00 0.00 0.00 2.83
1320 1401 1.295792 GCGAAATCGATGGCAACCTA 58.704 50.000 7.06 0.00 43.02 3.08
1329 1415 3.813596 GCACCCTGCGAAATCGAT 58.186 55.556 7.06 0.00 43.02 3.59
1400 1486 1.122632 TGCCCGTACTTCCTCCACAA 61.123 55.000 0.00 0.00 0.00 3.33
1454 1540 5.717119 AGGGGCATTTCTTTCTACTGTAT 57.283 39.130 0.00 0.00 0.00 2.29
1624 1721 1.266175 CCGTAGTAGGCGATGACGAAT 59.734 52.381 5.97 0.00 42.66 3.34
1702 1799 1.448540 GTCGACGACGGTAGGAGGA 60.449 63.158 12.94 0.00 40.21 3.71
1752 1849 2.516888 CCCCTGTTCCAGTCCACGT 61.517 63.158 0.00 0.00 0.00 4.49
1756 1853 2.671682 GAGCCCCTGTTCCAGTCC 59.328 66.667 0.00 0.00 0.00 3.85
1840 1946 2.395690 GACAACAATCGCCGCGAG 59.604 61.111 21.61 10.93 39.91 5.03
1851 1957 3.547249 GAGGACGACGGCGACAACA 62.547 63.158 22.49 0.00 41.64 3.33
2048 2165 4.158209 TGTCCGAACACAAATATACTCCGA 59.842 41.667 0.00 0.00 0.00 4.55
2122 2239 1.580845 CTCAAAAGGCCTCACCGCAG 61.581 60.000 5.23 0.00 46.52 5.18
2123 2240 1.600636 CTCAAAAGGCCTCACCGCA 60.601 57.895 5.23 0.00 46.52 5.69
2124 2241 2.335712 CCTCAAAAGGCCTCACCGC 61.336 63.158 5.23 0.00 46.52 5.68
2163 2305 3.515316 CTTGTGCCGTGTCCGTCCT 62.515 63.158 0.00 0.00 0.00 3.85
2167 2309 3.403057 CGTCTTGTGCCGTGTCCG 61.403 66.667 0.00 0.00 0.00 4.79
2179 2327 5.753716 ACCTGAGTAGTCTATAACCGTCTT 58.246 41.667 0.00 0.00 0.00 3.01
2192 2340 1.681666 TCGGGTCGACCTGAGTAGT 59.318 57.895 36.96 0.00 46.04 2.73
2216 2364 4.220821 TGATATCGAATCTCAAGGCCCTAC 59.779 45.833 0.00 0.00 0.00 3.18
2242 2390 5.749588 TCGTTCTTCGTTGTTCTTCATGTTA 59.250 36.000 0.00 0.00 40.80 2.41
2268 2416 9.687210 ACGTTCTTTGTTTCTTTTAAAGACTTT 57.313 25.926 6.93 5.62 39.40 2.66
2277 2425 7.066525 TCCATAGACACGTTCTTTGTTTCTTTT 59.933 33.333 13.00 0.00 35.55 2.27
2281 2429 5.614887 GCTCCATAGACACGTTCTTTGTTTC 60.615 44.000 13.00 0.00 35.55 2.78
2284 2432 3.326747 GCTCCATAGACACGTTCTTTGT 58.673 45.455 13.00 0.00 35.55 2.83
2285 2433 2.345641 CGCTCCATAGACACGTTCTTTG 59.654 50.000 5.74 7.89 35.55 2.77
2288 2436 0.456221 CCGCTCCATAGACACGTTCT 59.544 55.000 0.00 0.00 38.51 3.01
2289 2437 1.146358 GCCGCTCCATAGACACGTTC 61.146 60.000 0.00 0.00 0.00 3.95
2291 2439 2.494918 GCCGCTCCATAGACACGT 59.505 61.111 0.00 0.00 0.00 4.49
2292 2440 2.279517 GGCCGCTCCATAGACACG 60.280 66.667 0.00 0.00 34.01 4.49
2293 2441 2.279517 CGGCCGCTCCATAGACAC 60.280 66.667 14.67 0.00 34.01 3.67
2294 2442 3.536917 CCGGCCGCTCCATAGACA 61.537 66.667 22.85 0.00 34.01 3.41
2295 2443 4.971125 GCCGGCCGCTCCATAGAC 62.971 72.222 22.85 0.00 34.01 2.59
2330 2478 1.728490 CTATTTTGGGCCGGCTGCTC 61.728 60.000 28.56 9.46 42.61 4.26
2331 2479 1.754234 CTATTTTGGGCCGGCTGCT 60.754 57.895 28.56 8.01 40.92 4.24
2332 2480 1.319614 TTCTATTTTGGGCCGGCTGC 61.320 55.000 28.56 10.77 40.16 5.25
2333 2481 1.402787 ATTCTATTTTGGGCCGGCTG 58.597 50.000 28.56 6.64 0.00 4.85
2334 2482 2.159179 AATTCTATTTTGGGCCGGCT 57.841 45.000 28.56 7.78 0.00 5.52
2335 2483 2.979814 AAATTCTATTTTGGGCCGGC 57.020 45.000 21.18 21.18 0.00 6.13
2384 2532 9.995003 CATTAAGAGTAGAGATTAGGAGCAAAT 57.005 33.333 0.00 0.00 0.00 2.32
2385 2533 8.424918 CCATTAAGAGTAGAGATTAGGAGCAAA 58.575 37.037 0.00 0.00 0.00 3.68
2386 2534 7.785028 TCCATTAAGAGTAGAGATTAGGAGCAA 59.215 37.037 0.00 0.00 0.00 3.91
2387 2535 7.231722 GTCCATTAAGAGTAGAGATTAGGAGCA 59.768 40.741 0.00 0.00 0.00 4.26
2388 2536 7.574217 CGTCCATTAAGAGTAGAGATTAGGAGC 60.574 44.444 0.00 0.00 0.00 4.70
2389 2537 7.662258 TCGTCCATTAAGAGTAGAGATTAGGAG 59.338 40.741 0.00 0.00 0.00 3.69
2390 2538 7.515586 TCGTCCATTAAGAGTAGAGATTAGGA 58.484 38.462 0.00 0.00 0.00 2.94
2391 2539 7.747155 TCGTCCATTAAGAGTAGAGATTAGG 57.253 40.000 0.00 0.00 0.00 2.69
2405 2553 7.066525 GGACTATTCAACCAATTCGTCCATTAA 59.933 37.037 0.00 0.00 40.39 1.40
2862 3010 4.771114 TGACCTTACCATACCTGGATTG 57.229 45.455 0.00 0.00 46.37 2.67
2912 3060 9.976776 AATTCGTCCATTAGGAGTAGAGATATA 57.023 33.333 0.00 0.00 46.92 0.86
2914 3062 7.176865 CCAATTCGTCCATTAGGAGTAGAGATA 59.823 40.741 0.00 0.00 46.92 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.