Multiple sequence alignment - TraesCS3B01G375300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G375300 chr3B 100.000 8205 0 0 1 8205 589542081 589550285 0.000000e+00 15152.0
1 TraesCS3B01G375300 chr3B 91.935 1649 84 20 4503 6120 755226889 755225259 0.000000e+00 2263.0
2 TraesCS3B01G375300 chr3B 91.382 731 30 4 5406 6118 741357066 741356351 0.000000e+00 970.0
3 TraesCS3B01G375300 chr3B 100.000 354 0 0 8554 8907 589550634 589550987 0.000000e+00 654.0
4 TraesCS3B01G375300 chr3B 94.483 145 8 0 5981 6125 659148464 659148320 3.240000e-54 224.0
5 TraesCS3B01G375300 chr3B 86.164 159 21 1 7156 7313 396272036 396271878 4.280000e-38 171.0
6 TraesCS3B01G375300 chr3D 91.557 3790 239 42 328 4077 448863738 448867486 0.000000e+00 5151.0
7 TraesCS3B01G375300 chr3D 92.387 2049 97 15 6176 8205 448867541 448869549 0.000000e+00 2865.0
8 TraesCS3B01G375300 chr3D 90.251 359 28 6 8554 8907 448869633 448869989 6.300000e-126 462.0
9 TraesCS3B01G375300 chr3D 91.797 256 18 1 57 312 448863497 448863749 3.960000e-93 353.0
10 TraesCS3B01G375300 chr3D 86.164 159 21 1 7156 7313 322435449 322435291 4.280000e-38 171.0
11 TraesCS3B01G375300 chr3D 87.179 78 4 4 8134 8205 507634215 507634138 5.730000e-12 84.2
12 TraesCS3B01G375300 chr3D 84.615 78 6 2 8134 8205 532808897 532808820 1.240000e-08 73.1
13 TraesCS3B01G375300 chr3D 93.617 47 2 1 8134 8179 468949519 468949473 1.600000e-07 69.4
14 TraesCS3B01G375300 chr3D 93.617 47 2 1 8134 8179 468966379 468966333 1.600000e-07 69.4
15 TraesCS3B01G375300 chr3A 92.192 1934 120 15 1613 3543 590231127 590233032 0.000000e+00 2706.0
16 TraesCS3B01G375300 chr3A 92.674 1911 81 22 6304 8205 590233950 590235810 0.000000e+00 2699.0
17 TraesCS3B01G375300 chr3A 92.294 1739 98 18 4390 6117 676760288 676758575 0.000000e+00 2436.0
18 TraesCS3B01G375300 chr3A 93.973 1095 56 9 4387 5475 706821334 706822424 0.000000e+00 1648.0
19 TraesCS3B01G375300 chr3A 90.305 1114 73 17 71 1183 590229688 590230767 0.000000e+00 1426.0
20 TraesCS3B01G375300 chr3A 91.144 813 58 7 3584 4389 590233029 590233834 0.000000e+00 1090.0
21 TraesCS3B01G375300 chr3A 90.574 488 31 7 5635 6120 663363821 663363347 4.540000e-177 632.0
22 TraesCS3B01G375300 chr3A 92.775 346 19 5 1209 1552 590230763 590231104 6.210000e-136 496.0
23 TraesCS3B01G375300 chr3A 86.704 361 31 8 8554 8907 590235892 590236242 1.400000e-102 385.0
24 TraesCS3B01G375300 chr3A 95.205 146 7 0 5981 6126 749614875 749615020 1.930000e-56 231.0
25 TraesCS3B01G375300 chr5B 93.038 1738 76 14 4391 6124 507021914 507023610 0.000000e+00 2497.0
26 TraesCS3B01G375300 chr4A 94.525 1589 78 9 4398 5980 309678866 309677281 0.000000e+00 2444.0
27 TraesCS3B01G375300 chr4A 89.824 511 30 8 5635 6124 38290667 38291176 3.510000e-178 636.0
28 TraesCS3B01G375300 chr4A 86.503 163 19 3 7161 7321 690411441 690411280 9.190000e-40 176.0
29 TraesCS3B01G375300 chr6A 92.687 1641 91 13 4503 6117 86403944 86405581 0.000000e+00 2338.0
30 TraesCS3B01G375300 chr2A 93.200 1603 83 11 4384 5980 672716994 672715412 0.000000e+00 2333.0
31 TraesCS3B01G375300 chr2A 92.730 1513 62 15 4390 5899 754576995 754575528 0.000000e+00 2141.0
32 TraesCS3B01G375300 chr2A 93.934 1187 59 10 4391 5569 205007114 205005933 0.000000e+00 1781.0
33 TraesCS3B01G375300 chr2A 94.667 150 6 2 5981 6129 672715365 672715217 1.930000e-56 231.0
34 TraesCS3B01G375300 chr2A 86.875 160 20 1 7156 7314 79316162 79316003 2.560000e-40 178.0
35 TraesCS3B01G375300 chr7B 92.430 1638 80 17 4503 6116 606406005 606407622 0.000000e+00 2298.0
36 TraesCS3B01G375300 chr7B 93.598 1437 62 9 4556 5980 688159776 688158358 0.000000e+00 2117.0
37 TraesCS3B01G375300 chr7B 93.421 608 20 4 5529 6117 155898155 155897549 0.000000e+00 883.0
38 TraesCS3B01G375300 chr7B 84.971 173 24 2 7156 7326 505937471 505937299 3.310000e-39 174.0
39 TraesCS3B01G375300 chr7A 92.261 1641 84 16 4503 6123 22949792 22948175 0.000000e+00 2287.0
40 TraesCS3B01G375300 chr7A 90.040 502 30 4 5635 6117 22949373 22949873 4.540000e-177 632.0
41 TraesCS3B01G375300 chr5A 94.370 1190 57 8 4391 5574 529302498 529303683 0.000000e+00 1818.0
42 TraesCS3B01G375300 chr5A 94.333 1094 51 9 4503 5591 680199124 680200211 0.000000e+00 1666.0
43 TraesCS3B01G375300 chr5A 89.888 178 15 3 5941 6117 156906814 156906989 9.000000e-55 226.0
44 TraesCS3B01G375300 chr5A 93.836 146 9 0 5984 6129 17563813 17563668 4.190000e-53 220.0
45 TraesCS3B01G375300 chr5A 86.624 157 19 2 7160 7314 535139076 535139232 1.190000e-38 172.0
46 TraesCS3B01G375300 chr1A 94.132 1193 60 8 4387 5574 334511208 334512395 0.000000e+00 1807.0
47 TraesCS3B01G375300 chr1A 86.538 156 20 1 7158 7312 395177446 395177601 4.280000e-38 171.0
48 TraesCS3B01G375300 chr1A 89.362 47 4 1 8134 8179 425678925 425678879 3.470000e-04 58.4
49 TraesCS3B01G375300 chr2B 89.234 1254 111 19 4391 5633 629609735 629610975 0.000000e+00 1546.0
50 TraesCS3B01G375300 chr2B 93.421 608 21 3 5529 6117 758923530 758922923 0.000000e+00 883.0
51 TraesCS3B01G375300 chr2B 90.200 500 22 2 5635 6117 758924453 758924942 2.110000e-175 627.0
52 TraesCS3B01G375300 chr2B 94.521 146 7 1 5981 6126 431166251 431166107 3.240000e-54 224.0
53 TraesCS3B01G375300 chr6B 89.510 1001 56 12 5166 6134 666179972 666178989 0.000000e+00 1221.0
54 TraesCS3B01G375300 chr1B 92.105 152 8 4 5981 6128 445884678 445884829 2.520000e-50 211.0
55 TraesCS3B01G375300 chr1B 85.366 164 20 4 7160 7319 390622449 390622286 5.530000e-37 167.0
56 TraesCS3B01G375300 chr7D 87.117 163 19 2 7161 7321 34756866 34757028 5.490000e-42 183.0
57 TraesCS3B01G375300 chr7D 87.013 154 19 1 7160 7312 436459624 436459777 1.190000e-38 172.0
58 TraesCS3B01G375300 chr7D 93.333 45 2 1 8134 8177 588831538 588831494 2.080000e-06 65.8
59 TraesCS3B01G375300 chr2D 87.500 160 19 1 7156 7314 79056324 79056165 5.490000e-42 183.0
60 TraesCS3B01G375300 chr2D 93.617 47 2 1 8134 8179 628171295 628171249 1.600000e-07 69.4
61 TraesCS3B01G375300 chr1D 85.976 164 19 4 7152 7314 7349697 7349857 1.190000e-38 172.0
62 TraesCS3B01G375300 chr1D 85.535 159 21 2 7160 7316 305226448 305226290 1.990000e-36 165.0
63 TraesCS3B01G375300 chr1D 85.897 156 21 1 7158 7312 314705603 314705758 1.990000e-36 165.0
64 TraesCS3B01G375300 chr1D 86.093 151 20 1 7163 7312 351254860 351254710 2.570000e-35 161.0
65 TraesCS3B01G375300 chr1D 93.617 47 2 1 8134 8179 463531181 463531227 1.600000e-07 69.4
66 TraesCS3B01G375300 chr1D 97.222 36 1 0 8134 8169 421451 421486 2.690000e-05 62.1
67 TraesCS3B01G375300 chr1D 100.000 29 0 0 8134 8162 454898125 454898097 4.000000e-03 54.7
68 TraesCS3B01G375300 chr4B 86.928 153 19 1 7161 7312 106227561 106227409 4.280000e-38 171.0
69 TraesCS3B01G375300 chr4B 85.987 157 20 2 7157 7312 146469371 146469216 5.530000e-37 167.0
70 TraesCS3B01G375300 chr4B 85.897 156 21 1 7161 7315 438375333 438375178 1.990000e-36 165.0
71 TraesCS3B01G375300 chr4B 74.411 297 58 12 3135 3417 177855815 177855523 2.630000e-20 111.0
72 TraesCS3B01G375300 chr6D 86.076 158 20 2 7156 7312 410398275 410398431 1.540000e-37 169.0
73 TraesCS3B01G375300 chr6D 84.906 159 22 2 7156 7313 48676053 48675896 9.260000e-35 159.0
74 TraesCS3B01G375300 chr6D 85.065 154 22 1 7160 7312 256728603 256728450 1.200000e-33 156.0
75 TraesCS3B01G375300 chr6D 85.065 154 22 1 7160 7312 256729400 256729247 1.200000e-33 156.0
76 TraesCS3B01G375300 chr6D 84.516 155 21 3 7161 7312 303060007 303059853 5.570000e-32 150.0
77 TraesCS3B01G375300 chr6D 84.177 158 21 4 7161 7316 320698231 320698076 5.570000e-32 150.0
78 TraesCS3B01G375300 chr6D 84.416 154 22 2 7161 7312 386931318 386931471 5.570000e-32 150.0
79 TraesCS3B01G375300 chr4D 86.364 154 19 2 7161 7312 74079504 74079351 5.530000e-37 167.0
80 TraesCS3B01G375300 chr4D 85.350 157 20 3 7161 7315 354880798 354880643 9.260000e-35 159.0
81 TraesCS3B01G375300 chr4D 93.617 47 2 1 8134 8179 389492677 389492631 1.600000e-07 69.4
82 TraesCS3B01G375300 chr5D 85.093 161 22 2 7161 7319 175300057 175299897 7.160000e-36 163.0
83 TraesCS3B01G375300 chr5D 93.617 47 2 1 8134 8179 322189731 322189685 1.600000e-07 69.4
84 TraesCS3B01G375300 chr5D 87.500 48 5 1 8134 8180 513532913 513532866 4.000000e-03 54.7
85 TraesCS3B01G375300 chrUn 85.034 147 21 1 7167 7312 50619845 50619991 2.000000e-31 148.0
86 TraesCS3B01G375300 chrUn 84.314 153 21 3 7161 7312 480163320 480163470 7.210000e-31 147.0
87 TraesCS3B01G375300 chrUn 80.124 161 23 7 7161 7312 90452954 90453114 2.630000e-20 111.0
88 TraesCS3B01G375300 chrUn 80.519 154 23 5 7161 7313 319857035 319857182 2.630000e-20 111.0
89 TraesCS3B01G375300 chrUn 80.519 154 23 5 7161 7313 331093107 331092960 2.630000e-20 111.0
90 TraesCS3B01G375300 chrUn 81.905 105 18 1 7160 7263 60938262 60938366 4.430000e-13 87.9
91 TraesCS3B01G375300 chrUn 85.965 57 8 0 7160 7216 334202206 334202150 2.690000e-05 62.1
92 TraesCS3B01G375300 chrUn 97.143 35 0 1 7283 7317 146902819 146902786 3.470000e-04 58.4
93 TraesCS3B01G375300 chrUn 97.143 35 0 1 7283 7317 146930282 146930249 3.470000e-04 58.4
94 TraesCS3B01G375300 chrUn 97.143 35 0 1 7283 7317 147063472 147063439 3.470000e-04 58.4
95 TraesCS3B01G375300 chrUn 97.143 35 0 1 7283 7317 147088704 147088671 3.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G375300 chr3B 589542081 589550987 8906 False 7903.00 15152 100.000000 1 8907 2 chr3B.!!$F1 8906
1 TraesCS3B01G375300 chr3B 755225259 755226889 1630 True 2263.00 2263 91.935000 4503 6120 1 chr3B.!!$R4 1617
2 TraesCS3B01G375300 chr3B 741356351 741357066 715 True 970.00 970 91.382000 5406 6118 1 chr3B.!!$R3 712
3 TraesCS3B01G375300 chr3D 448863497 448869989 6492 False 2207.75 5151 91.498000 57 8907 4 chr3D.!!$F1 8850
4 TraesCS3B01G375300 chr3A 676758575 676760288 1713 True 2436.00 2436 92.294000 4390 6117 1 chr3A.!!$R2 1727
5 TraesCS3B01G375300 chr3A 706821334 706822424 1090 False 1648.00 1648 93.973000 4387 5475 1 chr3A.!!$F1 1088
6 TraesCS3B01G375300 chr3A 590229688 590236242 6554 False 1467.00 2706 90.965667 71 8907 6 chr3A.!!$F3 8836
7 TraesCS3B01G375300 chr5B 507021914 507023610 1696 False 2497.00 2497 93.038000 4391 6124 1 chr5B.!!$F1 1733
8 TraesCS3B01G375300 chr4A 309677281 309678866 1585 True 2444.00 2444 94.525000 4398 5980 1 chr4A.!!$R1 1582
9 TraesCS3B01G375300 chr4A 38290667 38291176 509 False 636.00 636 89.824000 5635 6124 1 chr4A.!!$F1 489
10 TraesCS3B01G375300 chr6A 86403944 86405581 1637 False 2338.00 2338 92.687000 4503 6117 1 chr6A.!!$F1 1614
11 TraesCS3B01G375300 chr2A 754575528 754576995 1467 True 2141.00 2141 92.730000 4390 5899 1 chr2A.!!$R3 1509
12 TraesCS3B01G375300 chr2A 205005933 205007114 1181 True 1781.00 1781 93.934000 4391 5569 1 chr2A.!!$R2 1178
13 TraesCS3B01G375300 chr2A 672715217 672716994 1777 True 1282.00 2333 93.933500 4384 6129 2 chr2A.!!$R4 1745
14 TraesCS3B01G375300 chr7B 606406005 606407622 1617 False 2298.00 2298 92.430000 4503 6116 1 chr7B.!!$F1 1613
15 TraesCS3B01G375300 chr7B 688158358 688159776 1418 True 2117.00 2117 93.598000 4556 5980 1 chr7B.!!$R3 1424
16 TraesCS3B01G375300 chr7B 155897549 155898155 606 True 883.00 883 93.421000 5529 6117 1 chr7B.!!$R1 588
17 TraesCS3B01G375300 chr7A 22948175 22949792 1617 True 2287.00 2287 92.261000 4503 6123 1 chr7A.!!$R1 1620
18 TraesCS3B01G375300 chr7A 22949373 22949873 500 False 632.00 632 90.040000 5635 6117 1 chr7A.!!$F1 482
19 TraesCS3B01G375300 chr5A 529302498 529303683 1185 False 1818.00 1818 94.370000 4391 5574 1 chr5A.!!$F2 1183
20 TraesCS3B01G375300 chr5A 680199124 680200211 1087 False 1666.00 1666 94.333000 4503 5591 1 chr5A.!!$F4 1088
21 TraesCS3B01G375300 chr1A 334511208 334512395 1187 False 1807.00 1807 94.132000 4387 5574 1 chr1A.!!$F1 1187
22 TraesCS3B01G375300 chr2B 629609735 629610975 1240 False 1546.00 1546 89.234000 4391 5633 1 chr2B.!!$F1 1242
23 TraesCS3B01G375300 chr2B 758922923 758923530 607 True 883.00 883 93.421000 5529 6117 1 chr2B.!!$R2 588
24 TraesCS3B01G375300 chr6B 666178989 666179972 983 True 1221.00 1221 89.510000 5166 6134 1 chr6B.!!$R1 968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 1001 0.112995 TCTGCAAAGACCAGGCCATT 59.887 50.000 5.01 0.00 0.00 3.16 F
1095 1099 1.604023 CGCGTCCTATAGCCCTCCT 60.604 63.158 0.00 0.00 0.00 3.69 F
1275 1280 1.929230 TTTGTCTTGCTCGACGTGAA 58.071 45.000 0.00 0.00 36.71 3.18 F
2458 2471 0.111253 CCAAAGGGAGCCTGAACTGT 59.889 55.000 0.00 0.00 35.59 3.55 F
2897 2931 0.398522 TAGGGACATGGAGCCGACAT 60.399 55.000 0.00 0.00 0.00 3.06 F
3700 3747 0.035152 AGGCCATTCTTCGTCATGCA 60.035 50.000 5.01 0.00 0.00 3.96 F
4546 4597 0.102300 ACTTTTCAGCCAACCGTTGC 59.898 50.000 5.68 2.05 0.00 4.17 F
4553 4604 0.179086 AGCCAACCGTTGCCAAAAAG 60.179 50.000 5.68 0.00 0.00 2.27 F
4554 4605 0.461163 GCCAACCGTTGCCAAAAAGT 60.461 50.000 5.68 0.00 0.00 2.66 F
6182 6432 0.377203 GTTTGGTACGCTAGGCATGC 59.623 55.000 9.90 9.90 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2061 1.881973 AGACCATGCATGTGTTGTGAC 59.118 47.619 24.58 8.99 0.00 3.67 R
2050 2062 2.275134 AGACCATGCATGTGTTGTGA 57.725 45.000 24.58 0.00 0.00 3.58 R
2707 2741 2.624364 TGTAGTACGACAAGGACAAGCA 59.376 45.455 6.32 0.00 35.65 3.91 R
3604 3646 0.035439 TTTGAGCTAGAAAGGGGCCG 60.035 55.000 0.00 0.00 0.00 6.13 R
4122 4171 0.108992 AGCGCCGACAACGATTAAGA 60.109 50.000 2.29 0.00 42.66 2.10 R
5521 5679 0.253044 TCCCGCCATCTTCTTTCCAG 59.747 55.000 0.00 0.00 0.00 3.86 R
6130 6371 0.627986 AGCTTAGCTGGAAATGGGCT 59.372 50.000 5.70 0.00 37.57 5.19 R
6171 6412 1.089920 AGAACAAAGCATGCCTAGCG 58.910 50.000 15.66 1.08 37.01 4.26 R
6291 6541 2.102252 GGACAAAAATTGCAGTCCCACA 59.898 45.455 8.94 0.00 43.67 4.17 R
7925 8192 0.681564 AGTTTTTGGCCCGTGTGTGA 60.682 50.000 0.00 0.00 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.030874 GACAAAATAGGTGTCCGTTTGAG 57.969 43.478 14.52 5.79 39.62 3.02
29 30 4.457466 ACAAAATAGGTGTCCGTTTGAGT 58.543 39.130 14.52 6.20 32.80 3.41
30 31 4.514066 ACAAAATAGGTGTCCGTTTGAGTC 59.486 41.667 14.52 0.00 32.80 3.36
31 32 2.649331 ATAGGTGTCCGTTTGAGTCG 57.351 50.000 0.00 0.00 0.00 4.18
33 34 2.315386 GGTGTCCGTTTGAGTCGGC 61.315 63.158 0.00 0.00 46.49 5.54
34 35 2.029964 TGTCCGTTTGAGTCGGCC 59.970 61.111 0.00 0.00 46.49 6.13
35 36 2.741211 GTCCGTTTGAGTCGGCCC 60.741 66.667 0.00 0.00 46.49 5.80
36 37 4.367023 TCCGTTTGAGTCGGCCCG 62.367 66.667 0.00 0.00 46.49 6.13
37 38 4.675029 CCGTTTGAGTCGGCCCGT 62.675 66.667 1.63 0.00 41.48 5.28
38 39 3.411351 CGTTTGAGTCGGCCCGTG 61.411 66.667 1.63 0.00 0.00 4.94
39 40 3.047877 GTTTGAGTCGGCCCGTGG 61.048 66.667 1.63 0.00 0.00 4.94
40 41 4.323477 TTTGAGTCGGCCCGTGGG 62.323 66.667 1.63 0.00 38.57 4.61
49 50 4.021925 GCCCGTGGGAGTTGCTCT 62.022 66.667 9.72 0.00 37.50 4.09
50 51 2.750350 CCCGTGGGAGTTGCTCTT 59.250 61.111 0.00 0.00 37.50 2.85
51 52 1.980052 CCCGTGGGAGTTGCTCTTA 59.020 57.895 0.00 0.00 37.50 2.10
52 53 0.541863 CCCGTGGGAGTTGCTCTTAT 59.458 55.000 0.00 0.00 37.50 1.73
53 54 1.760613 CCCGTGGGAGTTGCTCTTATA 59.239 52.381 0.00 0.00 37.50 0.98
54 55 2.368875 CCCGTGGGAGTTGCTCTTATAT 59.631 50.000 0.00 0.00 37.50 0.86
55 56 3.181454 CCCGTGGGAGTTGCTCTTATATT 60.181 47.826 0.00 0.00 37.50 1.28
60 61 7.876068 CCGTGGGAGTTGCTCTTATATTATTTA 59.124 37.037 0.00 0.00 0.00 1.40
83 84 1.643310 TTCAAAAAGGAGGGCATGGG 58.357 50.000 0.00 0.00 0.00 4.00
88 89 2.220786 AAAGGAGGGCATGGGCTGAG 62.221 60.000 0.00 0.00 40.87 3.35
118 119 1.267121 AGCCACCGTCAGTATTCACT 58.733 50.000 0.00 0.00 34.42 3.41
282 283 3.195182 TCAGCAAGTTCTCTCTGATGGAG 59.805 47.826 0.00 0.00 43.12 3.86
297 298 0.396417 TGGAGCTAGCTGGACTCTCC 60.396 60.000 24.99 15.81 39.06 3.71
300 301 2.418910 GCTAGCTGGACTCTCCGCA 61.419 63.158 7.70 0.00 40.17 5.69
301 302 1.949847 GCTAGCTGGACTCTCCGCAA 61.950 60.000 7.70 0.00 40.17 4.85
302 303 0.749649 CTAGCTGGACTCTCCGCAAT 59.250 55.000 0.00 0.00 40.17 3.56
303 304 1.137872 CTAGCTGGACTCTCCGCAATT 59.862 52.381 0.00 0.00 40.17 2.32
304 305 0.326264 AGCTGGACTCTCCGCAATTT 59.674 50.000 0.00 0.00 40.17 1.82
305 306 0.449388 GCTGGACTCTCCGCAATTTG 59.551 55.000 0.00 0.00 40.17 2.32
306 307 0.449388 CTGGACTCTCCGCAATTTGC 59.551 55.000 11.42 11.42 40.17 3.68
307 308 0.250684 TGGACTCTCCGCAATTTGCA 60.251 50.000 20.56 1.88 45.36 4.08
308 309 0.449388 GGACTCTCCGCAATTTGCAG 59.551 55.000 20.56 10.12 45.36 4.41
309 310 0.179179 GACTCTCCGCAATTTGCAGC 60.179 55.000 20.56 4.28 45.36 5.25
310 311 0.890542 ACTCTCCGCAATTTGCAGCA 60.891 50.000 20.56 0.00 45.36 4.41
311 312 0.241749 CTCTCCGCAATTTGCAGCAA 59.758 50.000 20.56 2.83 45.36 3.91
312 313 0.889994 TCTCCGCAATTTGCAGCAAT 59.110 45.000 20.56 0.00 45.36 3.56
313 314 1.273048 TCTCCGCAATTTGCAGCAATT 59.727 42.857 20.56 2.17 45.36 2.32
314 315 2.070783 CTCCGCAATTTGCAGCAATTT 58.929 42.857 20.56 9.10 45.36 1.82
315 316 2.481185 CTCCGCAATTTGCAGCAATTTT 59.519 40.909 20.56 3.31 45.36 1.82
316 317 2.877168 TCCGCAATTTGCAGCAATTTTT 59.123 36.364 20.56 0.67 45.36 1.94
436 437 5.131142 CCTCACTAATCTAATCCCAACTGGT 59.869 44.000 0.00 0.00 34.77 4.00
511 512 1.130373 CCATAATCAAACACGCACGCT 59.870 47.619 0.00 0.00 0.00 5.07
553 554 4.318333 CGTAAGATTGATGCTTGATCGTGG 60.318 45.833 0.00 0.00 43.02 4.94
587 588 5.521735 GGAACAGAGCACAATCATAGTACTG 59.478 44.000 5.39 0.00 0.00 2.74
625 626 9.393249 TGAAGAAAAACAAACGCTATTTATCAG 57.607 29.630 0.00 0.00 0.00 2.90
648 649 8.251026 TCAGAGGCAAAATGTATATATACTCCG 58.749 37.037 20.80 8.52 34.41 4.63
649 650 8.035394 CAGAGGCAAAATGTATATATACTCCGT 58.965 37.037 20.80 4.68 34.41 4.69
650 651 8.251721 AGAGGCAAAATGTATATATACTCCGTC 58.748 37.037 20.80 13.18 34.41 4.79
651 652 8.135382 AGGCAAAATGTATATATACTCCGTCT 57.865 34.615 20.80 10.54 34.41 4.18
652 653 9.251440 AGGCAAAATGTATATATACTCCGTCTA 57.749 33.333 20.80 2.52 34.41 2.59
653 654 9.298774 GGCAAAATGTATATATACTCCGTCTAC 57.701 37.037 20.80 6.62 34.41 2.59
797 798 4.095483 TCCGCAACAAAACTAAACCGTAAA 59.905 37.500 0.00 0.00 0.00 2.01
798 799 4.438471 CCGCAACAAAACTAAACCGTAAAG 59.562 41.667 0.00 0.00 0.00 1.85
821 822 6.904498 AGTATTGATCGAGTCTGTACTATGC 58.096 40.000 0.00 0.00 35.56 3.14
822 823 5.774498 ATTGATCGAGTCTGTACTATGCA 57.226 39.130 0.00 0.00 35.56 3.96
824 825 3.315470 TGATCGAGTCTGTACTATGCACC 59.685 47.826 0.00 0.00 35.56 5.01
826 827 1.067212 CGAGTCTGTACTATGCACCCC 59.933 57.143 0.00 0.00 35.56 4.95
827 828 2.108168 GAGTCTGTACTATGCACCCCA 58.892 52.381 0.00 0.00 35.56 4.96
840 844 2.361610 CCCCACGCCATTGAGCTT 60.362 61.111 0.00 0.00 0.00 3.74
844 848 1.026182 CCACGCCATTGAGCTTGCTA 61.026 55.000 0.00 0.00 31.04 3.49
851 855 2.559440 CATTGAGCTTGCTACCTCCTC 58.441 52.381 0.00 0.00 0.00 3.71
852 856 0.532573 TTGAGCTTGCTACCTCCTCG 59.467 55.000 0.00 0.00 0.00 4.63
874 878 3.434940 AATTTAAAGTCCTCCTGCGGT 57.565 42.857 0.00 0.00 0.00 5.68
920 924 0.694444 TGGCTACCCCATCTTCTCCC 60.694 60.000 0.00 0.00 39.18 4.30
979 983 3.821421 ATTATCTCCACCACCTCGTTC 57.179 47.619 0.00 0.00 0.00 3.95
997 1001 0.112995 TCTGCAAAGACCAGGCCATT 59.887 50.000 5.01 0.00 0.00 3.16
1086 1090 2.827190 TCTGCGTCCGCGTCCTAT 60.827 61.111 4.92 0.00 45.51 2.57
1095 1099 1.604023 CGCGTCCTATAGCCCTCCT 60.604 63.158 0.00 0.00 0.00 3.69
1119 1123 2.721167 CGTCTTCGGCATCTCCCCA 61.721 63.158 0.00 0.00 0.00 4.96
1122 1126 2.609299 TTCGGCATCTCCCCACCA 60.609 61.111 0.00 0.00 0.00 4.17
1134 1138 4.135153 CCACCAGAGTCCTCGCGG 62.135 72.222 6.13 0.00 34.51 6.46
1180 1184 4.339814 ACGGAAACTCTCCTCTATAGCAAG 59.660 45.833 0.00 0.00 42.85 4.01
1181 1185 4.339814 CGGAAACTCTCCTCTATAGCAAGT 59.660 45.833 0.00 0.00 42.85 3.16
1182 1186 5.596845 GGAAACTCTCCTCTATAGCAAGTG 58.403 45.833 0.00 0.00 41.61 3.16
1183 1187 4.664150 AACTCTCCTCTATAGCAAGTGC 57.336 45.455 0.00 0.00 42.49 4.40
1184 1188 2.962421 ACTCTCCTCTATAGCAAGTGCC 59.038 50.000 0.00 0.00 43.38 5.01
1185 1189 3.230134 CTCTCCTCTATAGCAAGTGCCT 58.770 50.000 0.00 0.00 43.38 4.75
1205 1209 2.755952 ACTTCTCCTGTTTGCCCTTT 57.244 45.000 0.00 0.00 0.00 3.11
1206 1210 2.587522 ACTTCTCCTGTTTGCCCTTTC 58.412 47.619 0.00 0.00 0.00 2.62
1207 1211 2.091885 ACTTCTCCTGTTTGCCCTTTCA 60.092 45.455 0.00 0.00 0.00 2.69
1208 1212 2.746279 TCTCCTGTTTGCCCTTTCAA 57.254 45.000 0.00 0.00 0.00 2.69
1255 1260 3.913548 AATGCGTGTTGATTTGCACTA 57.086 38.095 0.00 0.00 40.61 2.74
1269 1274 3.038788 TGCACTATTTGTCTTGCTCGA 57.961 42.857 0.00 0.00 35.91 4.04
1275 1280 1.929230 TTTGTCTTGCTCGACGTGAA 58.071 45.000 0.00 0.00 36.71 3.18
1307 1313 5.496500 CGTTCGTACGTGTATTGAATCTGTG 60.497 44.000 16.05 0.00 42.72 3.66
1337 1343 5.639506 GTGCATACTCATTTCTGTACTGTGT 59.360 40.000 0.00 0.00 0.00 3.72
1360 1366 3.188159 TCCTCGGTTGTATGCCAATAC 57.812 47.619 0.00 0.00 39.38 1.89
1391 1397 9.822727 AAGATTTGGTAAAATTAAGGAGGAGAA 57.177 29.630 0.00 0.00 36.10 2.87
1432 1438 2.906389 TCAGAAACAGGTGGCACTAGAT 59.094 45.455 18.45 2.21 0.00 1.98
1433 1439 3.327757 TCAGAAACAGGTGGCACTAGATT 59.672 43.478 18.45 10.88 0.00 2.40
1457 1463 2.944129 AGGCTCTAGCTAGAACTGGAG 58.056 52.381 23.37 12.19 45.36 3.86
1522 1529 7.209471 TGGTTTACTGCAGGTTAATAAAGTG 57.791 36.000 19.93 0.00 0.00 3.16
1525 1532 3.761897 ACTGCAGGTTAATAAAGTGCCA 58.238 40.909 19.93 0.00 32.99 4.92
1560 1568 3.025176 GAGTGATAGCGCCGCGTC 61.025 66.667 15.34 7.03 0.00 5.19
1592 1600 7.186021 ACCTAGACTAAAACAACATTCAACG 57.814 36.000 0.00 0.00 0.00 4.10
1593 1601 6.987992 ACCTAGACTAAAACAACATTCAACGA 59.012 34.615 0.00 0.00 0.00 3.85
1596 1604 7.730364 AGACTAAAACAACATTCAACGAGAT 57.270 32.000 0.00 0.00 0.00 2.75
1610 1618 5.410924 TCAACGAGATGGTGAATAGTTCTG 58.589 41.667 0.00 0.00 0.00 3.02
1644 1652 4.853007 AGCTATATTTCATGGGATCAGCC 58.147 43.478 0.00 0.00 0.00 4.85
1689 1697 9.875708 TTATTATGGTAGCCATTACTGGAAATT 57.124 29.630 2.72 0.00 42.23 1.82
1725 1733 7.956420 TTATCTGTTTACTTCTTCGCTTTCA 57.044 32.000 0.00 0.00 0.00 2.69
1726 1734 6.861065 ATCTGTTTACTTCTTCGCTTTCAA 57.139 33.333 0.00 0.00 0.00 2.69
1737 1745 7.379529 ACTTCTTCGCTTTCAATTTTGTACATG 59.620 33.333 0.00 0.00 0.00 3.21
1741 1749 7.144722 TCGCTTTCAATTTTGTACATGATCT 57.855 32.000 0.00 0.00 0.00 2.75
2046 2058 8.969260 TGCATATGAGAGAAAACAATGACTAT 57.031 30.769 6.97 0.00 0.00 2.12
2109 2121 7.254590 GCAGCACTGTCCTGAATAGTATTTTAG 60.255 40.741 2.18 0.00 32.03 1.85
2195 2207 3.713288 TCCCTATAAAACATGTCGAGCG 58.287 45.455 0.00 0.00 0.00 5.03
2248 2260 8.689251 TCATTTCTCATACTACTCAAGTTTCG 57.311 34.615 0.00 0.00 39.80 3.46
2255 2267 9.355215 CTCATACTACTCAAGTTTCGTAACAAT 57.645 33.333 7.69 0.00 39.80 2.71
2332 2345 6.833416 CCCTTCATTACCCAATAATCAGTTGA 59.167 38.462 0.00 0.00 30.54 3.18
2341 2354 5.598005 CCCAATAATCAGTTGATGGGCTTAA 59.402 40.000 5.77 0.00 37.57 1.85
2352 2365 3.638160 TGATGGGCTTAATGAATCTTGGC 59.362 43.478 0.00 0.00 0.00 4.52
2384 2397 4.403453 CTTTATTCTAAACGGTGCAGCAC 58.597 43.478 17.97 17.97 0.00 4.40
2385 2398 1.890876 ATTCTAAACGGTGCAGCACA 58.109 45.000 26.78 5.07 35.86 4.57
2422 2435 5.989477 AGAACTCAATCGTCCATAATTCCA 58.011 37.500 0.00 0.00 0.00 3.53
2452 2465 1.615392 CTTTGTTCCAAAGGGAGCCTG 59.385 52.381 8.50 0.00 46.01 4.85
2458 2471 0.111253 CCAAAGGGAGCCTGAACTGT 59.889 55.000 0.00 0.00 35.59 3.55
2504 2534 4.177165 TGCATTTTTCATAGCCACACAG 57.823 40.909 0.00 0.00 0.00 3.66
2542 2572 2.707849 GCTTGTGCCCATCCTGCAG 61.708 63.158 6.78 6.78 39.87 4.41
2565 2595 3.884895 TGAGGCTTCTTGTCTTGTTGAA 58.115 40.909 0.00 0.00 0.00 2.69
2646 2676 5.099042 AGTAGGATTTACCGCTGTTTCAT 57.901 39.130 0.00 0.00 44.74 2.57
2650 2680 6.096673 AGGATTTACCGCTGTTTCATTTTT 57.903 33.333 0.00 0.00 44.74 1.94
2716 2750 2.281070 CCGCACACTGCTTGTCCT 60.281 61.111 0.00 0.00 42.25 3.85
2737 2771 5.639506 TCCTTGTCGTACTACACTGTAGTAC 59.360 44.000 32.43 32.43 43.78 2.73
2777 2811 2.682856 CACAAATGGCATAGTTAGCGGT 59.317 45.455 0.00 0.00 0.00 5.68
2779 2813 1.308998 AATGGCATAGTTAGCGGTGC 58.691 50.000 0.00 1.63 36.88 5.01
2816 2850 2.805099 GCATCACTATGAGCAGCCTAAC 59.195 50.000 0.00 0.00 34.84 2.34
2845 2879 4.329545 GCCGACCCACTCTGGCAA 62.330 66.667 0.00 0.00 46.76 4.52
2896 2930 1.001120 TAGGGACATGGAGCCGACA 59.999 57.895 0.00 0.00 0.00 4.35
2897 2931 0.398522 TAGGGACATGGAGCCGACAT 60.399 55.000 0.00 0.00 0.00 3.06
2936 2970 2.668612 CCACATGTCCCATTTGGCA 58.331 52.632 0.00 0.00 0.00 4.92
2943 2977 3.395054 TGTCCCATTTGGCAATATGGA 57.605 42.857 28.03 19.37 43.25 3.41
2957 2991 4.522789 GCAATATGGACCGACCCATTTAAT 59.477 41.667 12.61 0.41 44.11 1.40
2958 2992 5.708230 GCAATATGGACCGACCCATTTAATA 59.292 40.000 12.61 0.00 44.11 0.98
2959 2993 6.377146 GCAATATGGACCGACCCATTTAATAT 59.623 38.462 12.61 0.00 44.11 1.28
2965 3000 6.488683 TGGACCGACCCATTTAATATTTGATC 59.511 38.462 0.00 0.00 38.00 2.92
2969 3004 7.559897 ACCGACCCATTTAATATTTGATCTGTT 59.440 33.333 0.00 0.00 0.00 3.16
3009 3044 5.529430 TCGGTTACACAACAACATCATTTCT 59.471 36.000 0.00 0.00 36.29 2.52
3093 3128 9.162793 GTTCAATGAAAAGAAGACATATATGCG 57.837 33.333 12.79 0.00 0.00 4.73
3295 3336 0.965439 GCCTCTAGCGATGATGGACT 59.035 55.000 0.00 0.00 0.00 3.85
3316 3357 1.048601 GTGGTGACTGACTCCCTTGA 58.951 55.000 0.00 0.00 0.00 3.02
3358 3400 2.534990 CCAAAAGACCCATTGGCCTTA 58.465 47.619 3.32 0.00 39.64 2.69
3367 3409 4.623863 ACCCATTGGCCTTAGAATTTCAT 58.376 39.130 3.32 0.00 33.59 2.57
3486 3528 1.302192 GTTGCGTGCCTTCTGGGTA 60.302 57.895 0.00 0.00 37.43 3.69
3549 3591 0.969149 AGAGCCATCGTGTCTTCACA 59.031 50.000 0.00 0.00 44.02 3.58
3576 3618 1.861575 GCTTAGCACCGCTAGATGAAC 59.138 52.381 0.00 0.00 42.34 3.18
3602 3644 9.770097 CTTAGTAGTGTGTTGGATAATGATGAT 57.230 33.333 0.00 0.00 0.00 2.45
3700 3747 0.035152 AGGCCATTCTTCGTCATGCA 60.035 50.000 5.01 0.00 0.00 3.96
3708 3755 1.895798 TCTTCGTCATGCAAGGTCTCT 59.104 47.619 0.00 0.00 0.00 3.10
3760 3807 2.915604 CCTATGGGCTTGGAGATGGTAT 59.084 50.000 0.00 0.00 0.00 2.73
3767 3814 3.471680 GCTTGGAGATGGTATCTGGTTC 58.528 50.000 0.00 0.00 40.38 3.62
3790 3837 2.305928 CATATTTGATTGGCCGGGTGA 58.694 47.619 2.18 0.00 0.00 4.02
3844 3893 5.295292 CAGGTATGGATGAGTGTTGATTGAC 59.705 44.000 0.00 0.00 0.00 3.18
3928 3977 2.232941 AGTTTGATGGATTGGCTTGCAG 59.767 45.455 0.00 0.00 0.00 4.41
3981 4030 7.479897 TTGAATTGTGTTGAAATGACAATGG 57.520 32.000 0.00 0.00 39.64 3.16
4005 4054 1.625818 CCTAGAGTCACCTTGGCTTGT 59.374 52.381 0.00 0.00 28.93 3.16
4040 4089 3.826157 TGGACCTTTGTGATCATTGGAAC 59.174 43.478 0.00 0.00 0.00 3.62
4102 4151 0.105760 ATTGGCCTTGTCACCACCAA 60.106 50.000 3.32 0.00 44.04 3.67
4122 4171 1.559682 AGTTGGTGTGGTGTGTCTTCT 59.440 47.619 0.00 0.00 0.00 2.85
4127 4176 3.452990 TGGTGTGGTGTGTCTTCTCTTAA 59.547 43.478 0.00 0.00 0.00 1.85
4139 4188 1.904144 TCTCTTAATCGTTGTCGGCG 58.096 50.000 0.00 0.00 37.69 6.46
4171 4220 9.668497 GTCATTCTTTCCCTACTACAGTTTATT 57.332 33.333 0.00 0.00 0.00 1.40
4191 4240 5.623956 ATTTACGTTGGATAGGATGGTGA 57.376 39.130 0.00 0.00 0.00 4.02
4201 4250 1.148273 GGATGGTGATGCGGGCTAA 59.852 57.895 0.00 0.00 0.00 3.09
4273 4322 6.038825 TCGAGAACCTATTCTTGAGCTCTTAG 59.961 42.308 16.19 12.23 46.38 2.18
4485 4535 3.072468 CCCGTCGGCCTCCTGTTA 61.072 66.667 5.50 0.00 0.00 2.41
4516 4567 0.182775 ACTTTTCGGCCTCCTGTTGT 59.817 50.000 0.00 0.00 0.00 3.32
4546 4597 0.102300 ACTTTTCAGCCAACCGTTGC 59.898 50.000 5.68 2.05 0.00 4.17
4548 4599 1.323271 TTTTCAGCCAACCGTTGCCA 61.323 50.000 5.68 0.00 0.00 4.92
4553 4604 0.179086 AGCCAACCGTTGCCAAAAAG 60.179 50.000 5.68 0.00 0.00 2.27
4554 4605 0.461163 GCCAACCGTTGCCAAAAAGT 60.461 50.000 5.68 0.00 0.00 2.66
4555 4606 1.202428 GCCAACCGTTGCCAAAAAGTA 60.202 47.619 5.68 0.00 0.00 2.24
4556 4607 2.465855 CCAACCGTTGCCAAAAAGTAC 58.534 47.619 5.68 0.00 0.00 2.73
4557 4608 2.100087 CCAACCGTTGCCAAAAAGTACT 59.900 45.455 5.68 0.00 0.00 2.73
4649 4762 9.313118 CCAACAGTTGCTCTACTTTTTAAAAAT 57.687 29.630 13.55 7.20 0.00 1.82
4798 4913 8.795513 TGAATTTTCTCAAATCACTAGATTGCA 58.204 29.630 0.00 0.00 43.52 4.08
4821 4937 9.658799 TGCATATAATTTGAGCTAGGAGTATTC 57.341 33.333 0.00 0.00 0.00 1.75
5210 5351 5.337169 CCGCAATCTTTTTCCCTCCATTTTA 60.337 40.000 0.00 0.00 0.00 1.52
5215 5356 9.723601 CAATCTTTTTCCCTCCATTTTATTTGA 57.276 29.630 0.00 0.00 0.00 2.69
5278 5436 1.227380 GCTGCATCGACGGAGGATT 60.227 57.895 1.33 0.00 0.00 3.01
5281 5439 1.067060 CTGCATCGACGGAGGATTACA 59.933 52.381 0.00 0.00 0.00 2.41
5432 5590 2.338620 CCGACGCAGGAGACACAA 59.661 61.111 0.00 0.00 0.00 3.33
5509 5667 2.662006 TGAGAAGTGAAGATGGCGAG 57.338 50.000 0.00 0.00 0.00 5.03
5510 5668 2.171003 TGAGAAGTGAAGATGGCGAGA 58.829 47.619 0.00 0.00 0.00 4.04
5511 5669 2.562738 TGAGAAGTGAAGATGGCGAGAA 59.437 45.455 0.00 0.00 0.00 2.87
5512 5670 3.006859 TGAGAAGTGAAGATGGCGAGAAA 59.993 43.478 0.00 0.00 0.00 2.52
5513 5671 3.594134 AGAAGTGAAGATGGCGAGAAAG 58.406 45.455 0.00 0.00 0.00 2.62
5514 5672 3.259374 AGAAGTGAAGATGGCGAGAAAGA 59.741 43.478 0.00 0.00 0.00 2.52
5515 5673 3.685139 AGTGAAGATGGCGAGAAAGAA 57.315 42.857 0.00 0.00 0.00 2.52
5516 5674 3.594134 AGTGAAGATGGCGAGAAAGAAG 58.406 45.455 0.00 0.00 0.00 2.85
5517 5675 3.259374 AGTGAAGATGGCGAGAAAGAAGA 59.741 43.478 0.00 0.00 0.00 2.87
5518 5676 4.081198 AGTGAAGATGGCGAGAAAGAAGAT 60.081 41.667 0.00 0.00 0.00 2.40
5519 5677 4.033817 GTGAAGATGGCGAGAAAGAAGATG 59.966 45.833 0.00 0.00 0.00 2.90
5520 5678 3.191078 AGATGGCGAGAAAGAAGATGG 57.809 47.619 0.00 0.00 0.00 3.51
5521 5679 1.601430 GATGGCGAGAAAGAAGATGGC 59.399 52.381 0.00 0.00 0.00 4.40
5522 5680 0.615331 TGGCGAGAAAGAAGATGGCT 59.385 50.000 0.00 0.00 0.00 4.75
5523 5681 1.012841 GGCGAGAAAGAAGATGGCTG 58.987 55.000 0.00 0.00 0.00 4.85
5648 5837 8.191446 GGAGAGAATGGCTAAAAACCTAATTTC 58.809 37.037 0.00 0.00 0.00 2.17
5943 6137 1.072965 CTGTTGCCTGAAGAGGGACTT 59.927 52.381 0.00 0.00 39.95 3.01
5968 6162 0.531753 CCAACCGTTGGCCAAAAAGG 60.532 55.000 22.47 24.49 45.17 3.11
6143 6384 2.717639 TTCTAGAGCCCATTTCCAGC 57.282 50.000 0.00 0.00 0.00 4.85
6171 6412 6.257193 AGCTGCGTATGTATAAAGTTTGGTAC 59.743 38.462 0.00 2.62 0.00 3.34
6182 6432 0.377203 GTTTGGTACGCTAGGCATGC 59.623 55.000 9.90 9.90 0.00 4.06
6194 6444 2.503895 AGGCATGCTTTGTTCTAGCT 57.496 45.000 18.92 0.00 39.38 3.32
6221 6471 2.093128 CCTTGTGTATGTGGGAGGGTAC 60.093 54.545 0.00 0.00 0.00 3.34
6232 6482 1.135286 GGGAGGGTACGTGTTAAGTCG 60.135 57.143 0.00 0.00 0.00 4.18
6235 6485 2.226437 GAGGGTACGTGTTAAGTCGACA 59.774 50.000 19.50 0.00 0.00 4.35
6246 6496 6.238508 GTGTTAAGTCGACATTATTTCGTGG 58.761 40.000 19.50 0.00 37.73 4.94
6292 6542 9.820229 AGTACGAATACACATGTTTTTATGTTG 57.180 29.630 0.00 0.00 39.17 3.33
6293 6543 9.601971 GTACGAATACACATGTTTTTATGTTGT 57.398 29.630 0.00 0.00 39.17 3.32
6294 6544 8.500837 ACGAATACACATGTTTTTATGTTGTG 57.499 30.769 0.00 0.00 39.17 3.33
6295 6545 7.593273 ACGAATACACATGTTTTTATGTTGTGG 59.407 33.333 0.00 0.00 41.45 4.17
6296 6546 7.061673 CGAATACACATGTTTTTATGTTGTGGG 59.938 37.037 0.00 0.00 41.45 4.61
6297 6547 5.860941 ACACATGTTTTTATGTTGTGGGA 57.139 34.783 0.00 0.00 41.45 4.37
6298 6548 5.596845 ACACATGTTTTTATGTTGTGGGAC 58.403 37.500 0.00 0.00 41.45 4.46
6299 6549 5.362430 ACACATGTTTTTATGTTGTGGGACT 59.638 36.000 0.00 0.00 41.45 3.85
6300 6550 5.691305 CACATGTTTTTATGTTGTGGGACTG 59.309 40.000 0.00 0.00 39.17 3.51
6301 6551 4.314740 TGTTTTTATGTTGTGGGACTGC 57.685 40.909 0.00 0.00 0.00 4.40
6302 6552 3.701542 TGTTTTTATGTTGTGGGACTGCA 59.298 39.130 0.00 0.00 0.00 4.41
6303 6553 4.160439 TGTTTTTATGTTGTGGGACTGCAA 59.840 37.500 0.00 0.00 0.00 4.08
6304 6554 5.163364 TGTTTTTATGTTGTGGGACTGCAAT 60.163 36.000 0.00 0.00 0.00 3.56
6305 6555 5.543507 TTTTATGTTGTGGGACTGCAATT 57.456 34.783 0.00 0.00 0.00 2.32
6306 6556 5.543507 TTTATGTTGTGGGACTGCAATTT 57.456 34.783 0.00 0.00 0.00 1.82
6488 6738 7.286087 TGAAATACATATTGCTGCAGGAAAGAT 59.714 33.333 25.06 17.33 0.00 2.40
6657 6907 9.695526 CTTAGTTCTATCTCAATCTGAATGGAG 57.304 37.037 0.00 0.00 34.62 3.86
6763 7013 3.799281 TGGTGAACAGCCTTTTTCTTG 57.201 42.857 1.63 0.00 0.00 3.02
6824 7074 0.460311 ACTAATTCTCAGTCGGCCGG 59.540 55.000 27.83 9.82 0.00 6.13
6830 7080 3.958147 CTCAGTCGGCCGGCACAAT 62.958 63.158 34.17 8.27 0.00 2.71
6834 7084 0.393808 AGTCGGCCGGCACAATATTT 60.394 50.000 34.17 5.00 0.00 1.40
6988 7241 7.990886 AGTGGCATTATAGACCGAAAAAGATAA 59.009 33.333 0.00 0.00 0.00 1.75
7015 7268 0.613777 GAAGGTCATCCCTGAACCGT 59.386 55.000 0.00 0.00 45.47 4.83
7123 7377 7.479980 TGTAAATTGGTGTTTCTGTGAAAGAG 58.520 34.615 0.00 0.00 35.91 2.85
7127 7381 3.945285 TGGTGTTTCTGTGAAAGAGGTTC 59.055 43.478 0.00 0.00 35.91 3.62
7132 7386 5.815740 TGTTTCTGTGAAAGAGGTTCTGTAC 59.184 40.000 0.00 0.00 35.91 2.90
7146 7400 1.762957 TCTGTACATAGGCCCTTGCTC 59.237 52.381 0.00 0.00 37.74 4.26
7148 7402 0.249911 GTACATAGGCCCTTGCTCCG 60.250 60.000 0.00 0.00 37.74 4.63
7165 7419 2.952978 CTCCGTCTTGCTATGGTACTCT 59.047 50.000 0.00 0.00 0.00 3.24
7173 7427 3.362706 TGCTATGGTACTCTCTCCGTTT 58.637 45.455 0.00 0.00 0.00 3.60
7174 7428 3.130516 TGCTATGGTACTCTCTCCGTTTG 59.869 47.826 0.00 0.00 0.00 2.93
7193 7447 7.543868 TCCGTTTGCAAATATAAGATGTTTTGG 59.456 33.333 16.21 1.25 31.37 3.28
7241 7496 6.238566 CGGAATAAATGAATGAGCAGACACAT 60.239 38.462 0.00 0.00 0.00 3.21
7343 7604 5.873164 AGTTCACTACCATCGAAATAACACC 59.127 40.000 0.00 0.00 0.00 4.16
7411 7672 2.076100 CGTGAAGACAAGCAATGCCTA 58.924 47.619 0.00 0.00 0.00 3.93
7498 7759 3.870422 CACACGTGCAACACCGCA 61.870 61.111 17.22 0.00 40.32 5.69
7571 7832 0.667487 CGCGCTCTTTCTGAGGTTCA 60.667 55.000 5.56 0.00 42.87 3.18
7678 7945 3.632604 CCATGATGCTGAGCTTTGATTCT 59.367 43.478 5.83 0.00 0.00 2.40
7920 8187 0.251209 TACTGACCGTCTGTCTGGCT 60.251 55.000 13.73 0.00 44.67 4.75
7922 8189 1.107114 CTGACCGTCTGTCTGGCTAT 58.893 55.000 0.00 0.00 44.75 2.97
7925 8192 3.296854 TGACCGTCTGTCTGGCTATATT 58.703 45.455 0.00 0.00 44.75 1.28
7937 8204 1.226746 GCTATATTCACACACGGGCC 58.773 55.000 0.00 0.00 0.00 5.80
8007 8274 1.419762 TGTTGAGGGTATGTGCACACT 59.580 47.619 24.37 14.97 33.89 3.55
8064 8331 4.372656 AGTTCACTAGCTTGAGTGTGTTC 58.627 43.478 14.77 6.01 45.88 3.18
8162 8429 2.038168 GAAATTTGGGGGCCCGGA 59.962 61.111 17.79 4.08 39.42 5.14
8622 8890 9.869757 AATTTATAAAACTGGCCTCATTTGTAC 57.130 29.630 3.32 0.00 0.00 2.90
8628 8899 3.964031 ACTGGCCTCATTTGTACCAAAAA 59.036 39.130 3.32 0.00 0.00 1.94
8656 8927 5.648092 ACCCTTCGAGTATTTCTTGAAATGG 59.352 40.000 16.22 9.82 43.51 3.16
8827 9101 6.663093 ACCATTGATAGGCTTTTATGTGACAA 59.337 34.615 0.00 0.00 0.00 3.18
8873 9148 1.972198 CGTCTTGTACTGCCCTCCA 59.028 57.895 0.00 0.00 0.00 3.86
8884 9159 0.846015 TGCCCTCCATAGATTGGGTG 59.154 55.000 0.00 0.00 46.45 4.61
8887 9162 1.852965 CCCTCCATAGATTGGGTGGTT 59.147 52.381 0.00 0.00 46.45 3.67
8888 9163 2.244769 CCCTCCATAGATTGGGTGGTTT 59.755 50.000 0.00 0.00 46.45 3.27
8894 9169 6.921412 TCCATAGATTGGGTGGTTTTCATAT 58.079 36.000 0.00 0.00 46.45 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.514066 ACTCAAACGGACACCTATTTTGTC 59.486 41.667 0.00 0.00 42.35 3.18
7 8 4.457466 ACTCAAACGGACACCTATTTTGT 58.543 39.130 0.00 0.00 0.00 2.83
8 9 4.377022 CGACTCAAACGGACACCTATTTTG 60.377 45.833 0.00 0.00 0.00 2.44
9 10 3.744426 CGACTCAAACGGACACCTATTTT 59.256 43.478 0.00 0.00 0.00 1.82
10 11 3.323243 CGACTCAAACGGACACCTATTT 58.677 45.455 0.00 0.00 0.00 1.40
11 12 2.955614 CGACTCAAACGGACACCTATT 58.044 47.619 0.00 0.00 0.00 1.73
12 13 2.649331 CGACTCAAACGGACACCTAT 57.351 50.000 0.00 0.00 0.00 2.57
21 22 3.411351 CACGGGCCGACTCAAACG 61.411 66.667 35.78 2.05 0.00 3.60
22 23 3.047877 CCACGGGCCGACTCAAAC 61.048 66.667 35.78 0.00 0.00 2.93
23 24 4.323477 CCCACGGGCCGACTCAAA 62.323 66.667 35.78 0.00 0.00 2.69
32 33 2.180159 TAAGAGCAACTCCCACGGGC 62.180 60.000 0.00 0.00 34.68 6.13
33 34 0.541863 ATAAGAGCAACTCCCACGGG 59.458 55.000 0.00 0.00 0.00 5.28
34 35 3.753294 ATATAAGAGCAACTCCCACGG 57.247 47.619 0.00 0.00 0.00 4.94
35 36 7.730364 AAATAATATAAGAGCAACTCCCACG 57.270 36.000 0.00 0.00 0.00 4.94
55 56 9.447157 CATGCCCTCCTTTTTGAAAAATAAATA 57.553 29.630 3.28 0.00 0.00 1.40
60 61 4.507157 CCCATGCCCTCCTTTTTGAAAAAT 60.507 41.667 3.28 0.00 0.00 1.82
62 63 2.371510 CCCATGCCCTCCTTTTTGAAAA 59.628 45.455 0.00 0.00 0.00 2.29
67 68 0.906282 CAGCCCATGCCCTCCTTTTT 60.906 55.000 0.00 0.00 38.69 1.94
77 78 2.191641 GGGAGACTCAGCCCATGC 59.808 66.667 4.53 0.00 44.07 4.06
83 84 1.210478 TGGCTAAATGGGAGACTCAGC 59.790 52.381 4.53 3.31 0.00 4.26
88 89 0.252197 ACGGTGGCTAAATGGGAGAC 59.748 55.000 0.00 0.00 0.00 3.36
166 167 5.690409 GCATTAAATGGATGCATCTTCACTG 59.310 40.000 25.28 14.74 46.96 3.66
282 283 1.949847 TTGCGGAGAGTCCAGCTAGC 61.950 60.000 6.62 6.62 35.91 3.42
315 316 5.480642 TGCTGCAAATTATCCCTCAAAAA 57.519 34.783 0.00 0.00 0.00 1.94
316 317 5.480642 TTGCTGCAAATTATCCCTCAAAA 57.519 34.783 13.51 0.00 0.00 2.44
317 318 5.480642 TTTGCTGCAAATTATCCCTCAAA 57.519 34.783 22.84 0.00 0.00 2.69
318 319 5.680594 ATTTGCTGCAAATTATCCCTCAA 57.319 34.783 29.48 6.15 40.60 3.02
352 353 3.162858 ACCCCCACGTTTCGGTGA 61.163 61.111 0.00 0.00 40.38 4.02
436 437 4.562757 GGTGCCAGCCGATTAGATGTAATA 60.563 45.833 0.00 0.00 0.00 0.98
553 554 0.813821 GCTCTGTTCCCTTTGGCATC 59.186 55.000 0.00 0.00 0.00 3.91
644 645 5.417811 TCTCAGTACTAGTTGTAGACGGAG 58.582 45.833 13.56 13.56 34.19 4.63
645 646 5.411831 TCTCAGTACTAGTTGTAGACGGA 57.588 43.478 0.00 0.00 0.00 4.69
646 647 6.492007 TTTCTCAGTACTAGTTGTAGACGG 57.508 41.667 0.00 0.00 0.00 4.79
647 648 8.967552 ATTTTTCTCAGTACTAGTTGTAGACG 57.032 34.615 0.00 0.00 0.00 4.18
651 652 9.649167 GGCTTATTTTTCTCAGTACTAGTTGTA 57.351 33.333 0.00 0.00 0.00 2.41
652 653 7.606839 GGGCTTATTTTTCTCAGTACTAGTTGT 59.393 37.037 0.00 0.00 0.00 3.32
653 654 7.606456 TGGGCTTATTTTTCTCAGTACTAGTTG 59.394 37.037 0.00 0.00 0.00 3.16
655 656 7.253905 TGGGCTTATTTTTCTCAGTACTAGT 57.746 36.000 0.00 0.00 0.00 2.57
657 658 7.857456 TCATGGGCTTATTTTTCTCAGTACTA 58.143 34.615 0.00 0.00 0.00 1.82
797 798 6.486993 TGCATAGTACAGACTCGATCAATACT 59.513 38.462 0.00 1.79 37.10 2.12
798 799 6.579292 GTGCATAGTACAGACTCGATCAATAC 59.421 42.308 0.00 0.00 37.10 1.89
820 821 3.443045 CTCAATGGCGTGGGGTGC 61.443 66.667 0.00 0.00 0.00 5.01
821 822 3.443045 GCTCAATGGCGTGGGGTG 61.443 66.667 0.00 0.00 0.00 4.61
822 823 3.210012 AAGCTCAATGGCGTGGGGT 62.210 57.895 0.00 0.00 37.29 4.95
824 825 2.879907 CAAGCTCAATGGCGTGGG 59.120 61.111 0.00 0.00 37.87 4.61
826 827 0.097674 GTAGCAAGCTCAATGGCGTG 59.902 55.000 0.00 5.59 42.77 5.34
827 828 1.026718 GGTAGCAAGCTCAATGGCGT 61.027 55.000 0.00 0.00 37.29 5.68
840 844 5.801380 ACTTTAAATTTCGAGGAGGTAGCA 58.199 37.500 0.00 0.00 0.00 3.49
844 848 5.489249 GAGGACTTTAAATTTCGAGGAGGT 58.511 41.667 0.00 0.00 0.00 3.85
851 855 4.003519 CGCAGGAGGACTTTAAATTTCG 57.996 45.455 0.00 0.00 0.00 3.46
920 924 2.880890 GCAGCAGGTATATGTGGGAAAG 59.119 50.000 0.00 0.00 0.00 2.62
979 983 0.529378 GAATGGCCTGGTCTTTGCAG 59.471 55.000 3.32 0.00 0.00 4.41
1068 1072 1.779025 TATAGGACGCGGACGCAGAC 61.779 60.000 17.35 9.42 45.53 3.51
1095 1099 3.371097 GATGCCGAAGACGCCTCCA 62.371 63.158 0.00 0.00 38.29 3.86
1111 1115 0.031616 GAGGACTCTGGTGGGGAGAT 60.032 60.000 0.00 0.00 35.10 2.75
1134 1138 3.843240 CTCTTTCGGCTGTCGCGC 61.843 66.667 0.00 0.00 39.05 6.86
1180 1184 1.807142 GCAAACAGGAGAAGTAGGCAC 59.193 52.381 0.00 0.00 0.00 5.01
1181 1185 1.271379 GGCAAACAGGAGAAGTAGGCA 60.271 52.381 0.00 0.00 0.00 4.75
1182 1186 1.454201 GGCAAACAGGAGAAGTAGGC 58.546 55.000 0.00 0.00 0.00 3.93
1183 1187 1.630878 AGGGCAAACAGGAGAAGTAGG 59.369 52.381 0.00 0.00 0.00 3.18
1184 1188 3.425162 AAGGGCAAACAGGAGAAGTAG 57.575 47.619 0.00 0.00 0.00 2.57
1185 1189 3.137544 TGAAAGGGCAAACAGGAGAAGTA 59.862 43.478 0.00 0.00 0.00 2.24
1255 1260 2.148916 TCACGTCGAGCAAGACAAAT 57.851 45.000 0.00 0.00 40.98 2.32
1269 1274 1.202336 ACGAACGGAGAAAGTTCACGT 60.202 47.619 9.33 7.65 45.93 4.49
1307 1313 5.689819 ACAGAAATGAGTATGCACGTTTTC 58.310 37.500 0.00 0.00 0.00 2.29
1337 1343 1.271856 TGGCATACAACCGAGGAAGA 58.728 50.000 0.00 0.00 0.00 2.87
1360 1366 8.283699 TCCTTAATTTTACCAAATCTTACCCG 57.716 34.615 0.00 0.00 30.80 5.28
1432 1438 6.611785 TCCAGTTCTAGCTAGAGCCTATTAA 58.388 40.000 27.99 8.47 43.38 1.40
1433 1439 6.183361 ACTCCAGTTCTAGCTAGAGCCTATTA 60.183 42.308 27.99 9.16 43.38 0.98
1522 1529 5.125100 TCTCAATCATCAGTGTTTTTGGC 57.875 39.130 0.00 0.00 0.00 4.52
1525 1532 7.756395 ATCACTCTCAATCATCAGTGTTTTT 57.244 32.000 0.00 0.00 37.97 1.94
1560 1568 7.439381 TGTTGTTTTAGTCTAGGTTCTACCAG 58.561 38.462 0.00 0.00 41.95 4.00
1592 1600 7.099764 TCAGAAACAGAACTATTCACCATCTC 58.900 38.462 0.00 0.00 0.00 2.75
1593 1601 7.009179 TCAGAAACAGAACTATTCACCATCT 57.991 36.000 0.00 0.00 0.00 2.90
1596 1604 6.174720 ACTCAGAAACAGAACTATTCACCA 57.825 37.500 0.00 0.00 0.00 4.17
1610 1618 7.095857 CCATGAAATATAGCTCGACTCAGAAAC 60.096 40.741 0.00 0.00 0.00 2.78
1659 1667 9.555411 TCCAGTAATGGCTACCATAATAATCTA 57.445 33.333 3.77 0.00 44.40 1.98
1718 1726 7.801547 AAGATCATGTACAAAATTGAAAGCG 57.198 32.000 0.00 0.00 0.00 4.68
2046 2058 2.224744 ACCATGCATGTGTTGTGACCTA 60.225 45.455 24.58 0.00 0.00 3.08
2049 2061 1.881973 AGACCATGCATGTGTTGTGAC 59.118 47.619 24.58 8.99 0.00 3.67
2050 2062 2.275134 AGACCATGCATGTGTTGTGA 57.725 45.000 24.58 0.00 0.00 3.58
2051 2063 2.555325 AGAAGACCATGCATGTGTTGTG 59.445 45.455 24.58 10.99 0.00 3.33
2052 2064 2.867624 AGAAGACCATGCATGTGTTGT 58.132 42.857 24.58 15.22 0.00 3.32
2053 2065 3.928727 AAGAAGACCATGCATGTGTTG 57.071 42.857 24.58 12.07 0.00 3.33
2055 2067 3.504906 CAGAAAGAAGACCATGCATGTGT 59.495 43.478 24.58 20.65 0.00 3.72
2056 2068 3.754850 TCAGAAAGAAGACCATGCATGTG 59.245 43.478 24.58 17.76 0.00 3.21
2057 2069 4.025040 TCAGAAAGAAGACCATGCATGT 57.975 40.909 24.58 13.09 0.00 3.21
2058 2070 6.879276 ATATCAGAAAGAAGACCATGCATG 57.121 37.500 20.19 20.19 0.00 4.06
2059 2071 6.238953 GCAATATCAGAAAGAAGACCATGCAT 60.239 38.462 0.00 0.00 0.00 3.96
2060 2072 5.066893 GCAATATCAGAAAGAAGACCATGCA 59.933 40.000 0.00 0.00 0.00 3.96
2061 2073 5.066893 TGCAATATCAGAAAGAAGACCATGC 59.933 40.000 0.00 0.00 0.00 4.06
2109 2121 7.336931 TGGAAAAGAAAGCATATACTTGAGTCC 59.663 37.037 0.00 0.00 0.00 3.85
2129 2141 7.316640 TCGTTTCTGTTCATCTTTTTGGAAAA 58.683 30.769 0.00 0.00 0.00 2.29
2139 2151 4.338118 TGGCTTTTTCGTTTCTGTTCATCT 59.662 37.500 0.00 0.00 0.00 2.90
2286 2298 7.088589 AGGGAATGATACTTTGAAATGTTCG 57.911 36.000 0.00 0.00 0.00 3.95
2307 2319 6.833416 TCAACTGATTATTGGGTAATGAAGGG 59.167 38.462 0.00 0.00 33.16 3.95
2332 2345 2.624838 CGCCAAGATTCATTAAGCCCAT 59.375 45.455 0.00 0.00 0.00 4.00
2352 2365 6.482308 ACCGTTTAGAATAAAGGAATGGATCG 59.518 38.462 0.00 0.00 31.99 3.69
2384 2397 7.062839 CGATTGAGTTCTTAGAGGAGAAGTTTG 59.937 40.741 0.00 0.00 38.95 2.93
2385 2398 7.093992 CGATTGAGTTCTTAGAGGAGAAGTTT 58.906 38.462 0.00 0.00 38.95 2.66
2452 2465 4.457466 TCCCCAAAGAAGTTACACAGTTC 58.543 43.478 0.00 0.00 35.27 3.01
2458 2471 6.369629 TGATTTTCTCCCCAAAGAAGTTACA 58.630 36.000 0.00 0.00 36.66 2.41
2504 2534 6.155393 ACAAGCATACCCTAGCCTTATATCTC 59.845 42.308 0.00 0.00 0.00 2.75
2542 2572 3.627577 TCAACAAGACAAGAAGCCTCAAC 59.372 43.478 0.00 0.00 0.00 3.18
2565 2595 2.969821 TTTTGGACCTACATGGCTGT 57.030 45.000 0.00 0.00 40.22 4.40
2646 2676 6.426646 ACTTTGTATATGTTGGGGCAAAAA 57.573 33.333 0.00 0.00 0.00 1.94
2650 2680 5.080337 TCAAACTTTGTATATGTTGGGGCA 58.920 37.500 1.44 0.00 0.00 5.36
2707 2741 2.624364 TGTAGTACGACAAGGACAAGCA 59.376 45.455 6.32 0.00 35.65 3.91
2745 2779 7.839907 ACTATGCCATTTGTGTATCAATTGTT 58.160 30.769 5.13 0.00 36.35 2.83
2748 2782 8.137437 GCTAACTATGCCATTTGTGTATCAATT 58.863 33.333 0.00 0.00 35.84 2.32
2777 2811 4.892965 AAGTGTGGCCCGCTTGCA 62.893 61.111 16.32 0.00 42.25 4.08
2816 2850 3.739077 GGTCGGCCCATTTTGATTG 57.261 52.632 0.00 0.00 0.00 2.67
2840 2874 4.278513 CAGGGACCGGGTTTGCCA 62.279 66.667 6.32 0.00 36.17 4.92
2845 2879 4.280019 GCCAACAGGGACCGGGTT 62.280 66.667 6.32 0.00 40.01 4.11
2936 2970 8.802267 CAAATATTAAATGGGTCGGTCCATATT 58.198 33.333 10.12 9.32 46.05 1.28
2943 2977 7.060421 ACAGATCAAATATTAAATGGGTCGGT 58.940 34.615 0.00 0.00 0.00 4.69
2965 3000 7.653767 ACCGATTCTTGTTTTAGTAGAACAG 57.346 36.000 6.39 2.69 38.17 3.16
2969 3004 8.143193 TGTGTAACCGATTCTTGTTTTAGTAGA 58.857 33.333 0.00 0.00 34.36 2.59
3151 3189 7.047891 TGAACCAATATTGCTAGTGTTCTAGG 58.952 38.462 23.32 6.94 42.66 3.02
3206 3247 6.969993 ACACTTGCCTTGGAAAGTTATTAA 57.030 33.333 10.22 0.00 44.25 1.40
3210 3251 6.322712 ACAATAACACTTGCCTTGGAAAGTTA 59.677 34.615 10.22 2.83 44.25 2.24
3217 3258 5.446143 TGTTACAATAACACTTGCCTTGG 57.554 39.130 0.00 0.00 0.00 3.61
3285 3326 3.701542 TCAGTCACCACTAGTCCATCATC 59.298 47.826 0.00 0.00 0.00 2.92
3295 3336 2.158370 TCAAGGGAGTCAGTCACCACTA 60.158 50.000 0.00 0.00 0.00 2.74
3316 3357 3.400255 GTCGGCTTCTTGAAAACTAGGT 58.600 45.455 0.00 0.00 0.00 3.08
3358 3400 2.214376 TTGGCCCGACATGAAATTCT 57.786 45.000 0.00 0.00 0.00 2.40
3456 3498 7.926018 CAGAAGGCACGCAACCATATATATATA 59.074 37.037 4.90 4.92 0.00 0.86
3457 3499 6.763135 CAGAAGGCACGCAACCATATATATAT 59.237 38.462 0.00 0.00 0.00 0.86
3458 3500 6.106003 CAGAAGGCACGCAACCATATATATA 58.894 40.000 0.00 0.00 0.00 0.86
3459 3501 4.937620 CAGAAGGCACGCAACCATATATAT 59.062 41.667 0.00 0.00 0.00 0.86
3460 3502 4.314961 CAGAAGGCACGCAACCATATATA 58.685 43.478 0.00 0.00 0.00 0.86
3464 3506 0.676466 CCAGAAGGCACGCAACCATA 60.676 55.000 0.00 0.00 0.00 2.74
3473 3515 2.103263 CCTATGACTACCCAGAAGGCAC 59.897 54.545 0.00 0.00 40.58 5.01
3560 3602 2.761208 ACTAAGTTCATCTAGCGGTGCT 59.239 45.455 0.00 0.00 43.41 4.40
3576 3618 9.770097 ATCATCATTATCCAACACACTACTAAG 57.230 33.333 0.00 0.00 0.00 2.18
3602 3644 0.324923 TGAGCTAGAAAGGGGCCGTA 60.325 55.000 0.00 0.00 0.00 4.02
3604 3646 0.035439 TTTGAGCTAGAAAGGGGCCG 60.035 55.000 0.00 0.00 0.00 6.13
3700 3747 4.706842 TTTGCTTAGTGGAAGAGACCTT 57.293 40.909 0.00 0.00 37.33 3.50
3708 3755 2.603021 TGGCCATTTTGCTTAGTGGAA 58.397 42.857 0.00 0.00 33.53 3.53
3742 3789 2.374504 CAGATACCATCTCCAAGCCCAT 59.625 50.000 0.00 0.00 37.58 4.00
3776 3823 1.638529 AAAAATCACCCGGCCAATCA 58.361 45.000 2.24 0.00 0.00 2.57
3812 3861 3.639094 ACTCATCCATACCTGACAGTAGC 59.361 47.826 0.93 0.00 0.00 3.58
3818 3867 4.471904 TCAACACTCATCCATACCTGAC 57.528 45.455 0.00 0.00 0.00 3.51
3862 3911 7.187244 TGTCGGTTAAGAGAAGTATAGATCG 57.813 40.000 0.00 0.00 0.00 3.69
3928 3977 2.489938 TGGGTAGAAGATGTTGCCAC 57.510 50.000 0.00 0.00 0.00 5.01
3942 3991 4.400884 ACAATTCAATAATGCGCTTGGGTA 59.599 37.500 9.73 0.00 0.00 3.69
3981 4030 1.474143 GCCAAGGTGACTCTAGGATGC 60.474 57.143 0.00 0.00 42.68 3.91
4005 4054 4.837860 ACAAAGGTCCAAATATCAGCCAAA 59.162 37.500 0.00 0.00 0.00 3.28
4040 4089 4.836736 TCCCGGTACATATCTAAAGAAGGG 59.163 45.833 0.00 0.00 35.47 3.95
4102 4151 1.559682 AGAAGACACACCACACCAACT 59.440 47.619 0.00 0.00 0.00 3.16
4122 4171 0.108992 AGCGCCGACAACGATTAAGA 60.109 50.000 2.29 0.00 42.66 2.10
4127 4176 1.206578 CAAAAGCGCCGACAACGAT 59.793 52.632 2.29 0.00 42.66 3.73
4139 4188 5.966742 AGTAGGGAAAGAATGACAAAAGC 57.033 39.130 0.00 0.00 0.00 3.51
4171 4220 4.742440 GCATCACCATCCTATCCAACGTAA 60.742 45.833 0.00 0.00 0.00 3.18
4174 4223 2.146342 GCATCACCATCCTATCCAACG 58.854 52.381 0.00 0.00 0.00 4.10
4201 4250 2.584835 TGTTAACATCCCAGCTTGCT 57.415 45.000 3.59 0.00 0.00 3.91
4216 4265 4.707448 ACCAAATTGTAATGCCCGATGTTA 59.293 37.500 0.00 0.00 0.00 2.41
4273 4322 2.961424 CCAATCTGGGGTGTTCACC 58.039 57.895 12.99 12.99 37.71 4.02
4516 4567 1.002087 GCTGAAAAGTCCCTCTTCGGA 59.998 52.381 0.00 0.00 35.02 4.55
4548 4599 4.049546 GGTTGGCCGAAAAGTACTTTTT 57.950 40.909 29.26 16.24 42.26 1.94
4825 4941 8.547967 AACGAGTAGCAAAAAGAATCATCTAA 57.452 30.769 0.00 0.00 33.77 2.10
5144 5280 3.802948 AAAACGGCAATGGTTGTACAA 57.197 38.095 3.59 3.59 0.00 2.41
5210 5351 3.613910 CGGGAAAGAAAATGGCGTCAAAT 60.614 43.478 0.00 0.00 0.00 2.32
5215 5356 1.584495 GCGGGAAAGAAAATGGCGT 59.416 52.632 0.00 0.00 0.00 5.68
5278 5436 4.201657 CTCCACATGAAGGCATCATTGTA 58.798 43.478 1.83 0.00 46.85 2.41
5281 5439 3.021695 CACTCCACATGAAGGCATCATT 58.978 45.455 1.83 0.00 46.85 2.57
5439 5597 4.083961 ACGATCGTAGATAACATCGTCTGG 60.084 45.833 21.32 0.00 42.94 3.86
5509 5667 5.006386 TCTTCTTTCCAGCCATCTTCTTTC 58.994 41.667 0.00 0.00 0.00 2.62
5510 5668 4.990526 TCTTCTTTCCAGCCATCTTCTTT 58.009 39.130 0.00 0.00 0.00 2.52
5511 5669 4.647564 TCTTCTTTCCAGCCATCTTCTT 57.352 40.909 0.00 0.00 0.00 2.52
5512 5670 4.525024 CATCTTCTTTCCAGCCATCTTCT 58.475 43.478 0.00 0.00 0.00 2.85
5513 5671 3.631227 CCATCTTCTTTCCAGCCATCTTC 59.369 47.826 0.00 0.00 0.00 2.87
5514 5672 3.629087 CCATCTTCTTTCCAGCCATCTT 58.371 45.455 0.00 0.00 0.00 2.40
5515 5673 2.686118 GCCATCTTCTTTCCAGCCATCT 60.686 50.000 0.00 0.00 0.00 2.90
5516 5674 1.680207 GCCATCTTCTTTCCAGCCATC 59.320 52.381 0.00 0.00 0.00 3.51
5517 5675 1.772836 GCCATCTTCTTTCCAGCCAT 58.227 50.000 0.00 0.00 0.00 4.40
5518 5676 0.677731 CGCCATCTTCTTTCCAGCCA 60.678 55.000 0.00 0.00 0.00 4.75
5519 5677 1.379642 CCGCCATCTTCTTTCCAGCC 61.380 60.000 0.00 0.00 0.00 4.85
5520 5678 1.379642 CCCGCCATCTTCTTTCCAGC 61.380 60.000 0.00 0.00 0.00 4.85
5521 5679 0.253044 TCCCGCCATCTTCTTTCCAG 59.747 55.000 0.00 0.00 0.00 3.86
5522 5680 0.695924 TTCCCGCCATCTTCTTTCCA 59.304 50.000 0.00 0.00 0.00 3.53
5523 5681 1.745653 CTTTCCCGCCATCTTCTTTCC 59.254 52.381 0.00 0.00 0.00 3.13
5929 6123 1.946283 GCCGAAAAGTCCCTCTTCAGG 60.946 57.143 0.00 0.00 39.98 3.86
5968 6162 2.163509 GAAGAGGGAGGCCAAAAAGTC 58.836 52.381 5.01 0.00 0.00 3.01
6130 6371 0.627986 AGCTTAGCTGGAAATGGGCT 59.372 50.000 5.70 0.00 37.57 5.19
6131 6372 3.197664 AGCTTAGCTGGAAATGGGC 57.802 52.632 5.70 0.00 37.57 5.36
6143 6384 7.011109 ACCAAACTTTATACATACGCAGCTTAG 59.989 37.037 0.00 0.00 0.00 2.18
6152 6393 7.095899 GCCTAGCGTACCAAACTTTATACATAC 60.096 40.741 0.00 0.00 0.00 2.39
6171 6412 1.089920 AGAACAAAGCATGCCTAGCG 58.910 50.000 15.66 1.08 37.01 4.26
6182 6432 6.145535 CACAAGGCTTTAAGCTAGAACAAAG 58.854 40.000 16.89 0.03 41.99 2.77
6194 6444 4.331968 CTCCCACATACACAAGGCTTTAA 58.668 43.478 0.00 0.00 0.00 1.52
6221 6471 5.944135 CACGAAATAATGTCGACTTAACACG 59.056 40.000 17.92 15.40 41.02 4.49
6246 6496 6.471519 CGTACTTATAAGAGCAGTGGTGTAAC 59.528 42.308 19.38 0.00 0.00 2.50
6285 6535 5.543507 AAAATTGCAGTCCCACAACATAA 57.456 34.783 0.00 0.00 0.00 1.90
6286 6536 5.163364 ACAAAAATTGCAGTCCCACAACATA 60.163 36.000 0.00 0.00 0.00 2.29
6287 6537 4.128643 CAAAAATTGCAGTCCCACAACAT 58.871 39.130 0.00 0.00 0.00 2.71
6288 6538 3.055530 ACAAAAATTGCAGTCCCACAACA 60.056 39.130 0.00 0.00 0.00 3.33
6289 6539 3.530535 ACAAAAATTGCAGTCCCACAAC 58.469 40.909 0.00 0.00 0.00 3.32
6290 6540 3.431486 GGACAAAAATTGCAGTCCCACAA 60.431 43.478 8.94 0.00 43.67 3.33
6291 6541 2.102252 GGACAAAAATTGCAGTCCCACA 59.898 45.455 8.94 0.00 43.67 4.17
6292 6542 2.754472 GGACAAAAATTGCAGTCCCAC 58.246 47.619 8.94 0.00 43.67 4.61
6296 6546 6.549952 CAGATCTAGGACAAAAATTGCAGTC 58.450 40.000 0.00 0.00 0.00 3.51
6297 6547 5.105997 GCAGATCTAGGACAAAAATTGCAGT 60.106 40.000 0.00 0.00 0.00 4.40
6298 6548 5.106038 TGCAGATCTAGGACAAAAATTGCAG 60.106 40.000 0.00 0.00 33.43 4.41
6299 6549 4.766373 TGCAGATCTAGGACAAAAATTGCA 59.234 37.500 0.00 0.00 35.70 4.08
6300 6550 5.314923 TGCAGATCTAGGACAAAAATTGC 57.685 39.130 0.00 0.00 0.00 3.56
6301 6551 8.248945 AGAAATGCAGATCTAGGACAAAAATTG 58.751 33.333 0.00 0.00 0.00 2.32
6302 6552 8.358582 AGAAATGCAGATCTAGGACAAAAATT 57.641 30.769 0.00 0.00 0.00 1.82
6303 6553 7.951347 AGAAATGCAGATCTAGGACAAAAAT 57.049 32.000 0.00 0.00 0.00 1.82
6304 6554 8.103305 ACTAGAAATGCAGATCTAGGACAAAAA 58.897 33.333 28.47 4.83 46.10 1.94
6305 6555 7.624549 ACTAGAAATGCAGATCTAGGACAAAA 58.375 34.615 28.47 5.36 46.10 2.44
6306 6556 7.187824 ACTAGAAATGCAGATCTAGGACAAA 57.812 36.000 28.47 5.91 46.10 2.83
6350 6600 5.084818 TGAAGCAAGCTTAGTATGTGCTA 57.915 39.130 7.37 0.00 44.52 3.49
6614 6864 8.745464 AGAACTAAGAAATTCTCAGACGTTAC 57.255 34.615 0.00 0.00 28.79 2.50
6657 6907 5.705609 AATATAAAATCATGCACGGGACC 57.294 39.130 0.00 0.00 0.00 4.46
7015 7268 8.308931 CGGTTTAGTTGATGCCCTATATAACTA 58.691 37.037 0.00 0.00 32.09 2.24
7104 7358 3.963129 ACCTCTTTCACAGAAACACCAA 58.037 40.909 0.00 0.00 0.00 3.67
7123 7377 2.919228 CAAGGGCCTATGTACAGAACC 58.081 52.381 6.41 0.98 0.00 3.62
7127 7381 1.202698 GGAGCAAGGGCCTATGTACAG 60.203 57.143 6.41 0.00 42.56 2.74
7132 7386 1.227674 GACGGAGCAAGGGCCTATG 60.228 63.158 6.41 8.96 42.56 2.23
7146 7400 2.952978 AGAGAGTACCATAGCAAGACGG 59.047 50.000 0.00 0.00 0.00 4.79
7148 7402 3.003897 CGGAGAGAGTACCATAGCAAGAC 59.996 52.174 0.00 0.00 0.00 3.01
7165 7419 7.624360 AACATCTTATATTTGCAAACGGAGA 57.376 32.000 15.41 14.97 0.00 3.71
7216 7470 5.065090 TGTGTCTGCTCATTCATTTATTCCG 59.935 40.000 0.00 0.00 0.00 4.30
7258 7513 6.536447 TCTAACCTTTTTCTAAACGGGATGT 58.464 36.000 0.00 0.00 0.00 3.06
7343 7604 2.582728 ATTGCCGTTTACATGCATGG 57.417 45.000 29.41 12.60 34.51 3.66
7411 7672 1.152694 TTGCACCAGCTTTGAGGCT 60.153 52.632 0.00 0.00 44.10 4.58
7498 7759 3.918328 ATCGGGAGTTGGGACGGGT 62.918 63.158 0.00 0.00 0.00 5.28
7678 7945 1.066502 TGTTCGTGCTGCTGGCTATTA 60.067 47.619 0.00 0.00 42.39 0.98
7920 8187 3.351794 TTTGGCCCGTGTGTGAATATA 57.648 42.857 0.00 0.00 0.00 0.86
7922 8189 1.982660 TTTTGGCCCGTGTGTGAATA 58.017 45.000 0.00 0.00 0.00 1.75
7925 8192 0.681564 AGTTTTTGGCCCGTGTGTGA 60.682 50.000 0.00 0.00 0.00 3.58
8628 8899 3.983044 AGAAATACTCGAAGGGTGCTT 57.017 42.857 0.00 0.00 0.00 3.91
8656 8927 7.721286 ATTATGAAGATGTGACCGAAGATTC 57.279 36.000 0.00 0.00 0.00 2.52
8725 8996 9.143155 AGGTGAAGGCTTTTTCTATTTTCTTTA 57.857 29.630 0.00 0.00 0.00 1.85
8772 9046 2.851263 ATGTTCGCCTGGTTGTTAGA 57.149 45.000 0.00 0.00 0.00 2.10
8819 9093 7.573968 AAACTTTTCTAGCTCTTTGTCACAT 57.426 32.000 0.00 0.00 0.00 3.21
8856 9131 3.031736 TCTATGGAGGGCAGTACAAGAC 58.968 50.000 0.00 0.00 0.00 3.01
8873 9148 6.782494 GGGAATATGAAAACCACCCAATCTAT 59.218 38.462 0.00 0.00 36.27 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.