Multiple sequence alignment - TraesCS3B01G375200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G375200 chr3B 100.000 6238 0 0 1 6238 588858484 588864721 0.000000e+00 11520.0
1 TraesCS3B01G375200 chr3B 85.089 617 83 4 2636 3251 214445783 214445175 6.870000e-174 621.0
2 TraesCS3B01G375200 chr3B 93.548 217 12 2 6023 6238 141282832 141283047 7.800000e-84 322.0
3 TraesCS3B01G375200 chr3D 95.735 2040 63 18 612 2633 448630367 448632400 0.000000e+00 3264.0
4 TraesCS3B01G375200 chr3D 96.000 1550 39 6 3784 5313 448633094 448634640 0.000000e+00 2497.0
5 TraesCS3B01G375200 chr3D 88.266 571 64 3 2636 3205 498891533 498892101 0.000000e+00 680.0
6 TraesCS3B01G375200 chr3D 85.237 569 54 16 3251 3794 448632386 448632949 5.460000e-155 558.0
7 TraesCS3B01G375200 chr3D 91.860 344 26 2 239 581 448630021 448630363 4.370000e-131 479.0
8 TraesCS3B01G375200 chr3D 94.767 172 4 3 5314 5480 448634679 448634850 4.800000e-66 263.0
9 TraesCS3B01G375200 chr3D 82.051 195 31 4 5769 5961 191049424 191049232 5.000000e-36 163.0
10 TraesCS3B01G375200 chr3D 92.188 64 4 1 5477 5540 448645741 448645803 8.610000e-14 89.8
11 TraesCS3B01G375200 chr3A 91.286 2169 101 29 3251 5370 589910710 589912839 0.000000e+00 2878.0
12 TraesCS3B01G375200 chr3A 93.557 1133 37 12 622 1722 589908635 589909763 0.000000e+00 1655.0
13 TraesCS3B01G375200 chr3A 95.346 924 31 6 1714 2629 589909801 589910720 0.000000e+00 1458.0
14 TraesCS3B01G375200 chr3A 88.803 518 24 9 4979 5462 589913260 589913777 6.920000e-169 604.0
15 TraesCS3B01G375200 chr3A 86.957 460 40 10 5584 6026 589915006 589915462 3.360000e-137 499.0
16 TraesCS3B01G375200 chr3A 92.775 346 14 5 4979 5313 589912838 589913183 2.020000e-134 490.0
17 TraesCS3B01G375200 chr3A 86.071 280 28 5 239 508 589908340 589908618 2.200000e-74 291.0
18 TraesCS3B01G375200 chr3A 93.407 91 5 1 5460 5550 589914915 589915004 3.920000e-27 134.0
19 TraesCS3B01G375200 chr3A 96.429 56 2 0 5315 5370 589913206 589913261 6.660000e-15 93.5
20 TraesCS3B01G375200 chr2B 97.419 620 13 2 2636 3255 28629120 28628504 0.000000e+00 1053.0
21 TraesCS3B01G375200 chr2B 86.971 614 78 2 2639 3251 401818159 401817547 0.000000e+00 689.0
22 TraesCS3B01G375200 chr2B 92.511 227 15 2 6014 6238 683078012 683077786 2.170000e-84 324.0
23 TraesCS3B01G375200 chr2B 93.023 215 15 0 6021 6235 539710746 539710960 1.310000e-81 315.0
24 TraesCS3B01G375200 chr2B 82.990 194 30 3 5774 5966 395629943 395629752 8.310000e-39 172.0
25 TraesCS3B01G375200 chr6B 93.569 622 33 5 2638 3255 41978633 41979251 0.000000e+00 920.0
26 TraesCS3B01G375200 chr6B 87.013 616 79 1 2636 3251 21831230 21830616 0.000000e+00 693.0
27 TraesCS3B01G375200 chr6B 97.890 237 5 0 3 239 706446509 706446745 1.620000e-110 411.0
28 TraesCS3B01G375200 chr6B 94.872 234 11 1 6 239 711503990 711504222 1.280000e-96 364.0
29 TraesCS3B01G375200 chr6B 93.151 219 14 1 6021 6238 664541732 664541514 2.810000e-83 320.0
30 TraesCS3B01G375200 chr5D 87.917 629 67 8 2636 3259 534010253 534009629 0.000000e+00 732.0
31 TraesCS3B01G375200 chr5D 82.199 191 30 4 5773 5961 199392413 199392225 1.800000e-35 161.0
32 TraesCS3B01G375200 chr5D 94.000 50 3 0 5262 5311 367379889 367379938 6.710000e-10 76.8
33 TraesCS3B01G375200 chr5D 94.000 50 3 0 5262 5311 367412971 367413020 6.710000e-10 76.8
34 TraesCS3B01G375200 chr5D 92.683 41 2 1 543 582 270270093 270270053 2.430000e-04 58.4
35 TraesCS3B01G375200 chr7D 85.871 637 74 11 2636 3266 616101821 616101195 0.000000e+00 664.0
36 TraesCS3B01G375200 chr7D 82.447 188 32 1 5774 5961 546659544 546659730 5.000000e-36 163.0
37 TraesCS3B01G375200 chr7B 85.086 637 85 10 2636 3266 244599824 244599192 5.270000e-180 641.0
38 TraesCS3B01G375200 chr7B 95.299 234 11 0 6 239 1764835 1764602 7.640000e-99 372.0
39 TraesCS3B01G375200 chr7B 93.023 215 14 1 6023 6236 394776311 394776525 4.690000e-81 313.0
40 TraesCS3B01G375200 chr7B 89.024 82 8 1 544 625 462734074 462733994 3.980000e-17 100.0
41 TraesCS3B01G375200 chr1B 95.359 237 11 0 3 239 673460992 673461228 1.640000e-100 377.0
42 TraesCS3B01G375200 chr1B 94.958 238 11 1 3 239 223133669 223133906 7.640000e-99 372.0
43 TraesCS3B01G375200 chr1B 93.981 216 11 2 6021 6235 644549094 644548880 6.030000e-85 326.0
44 TraesCS3B01G375200 chr1B 90.698 43 4 0 5263 5305 133116624 133116582 2.430000e-04 58.4
45 TraesCS3B01G375200 chr5B 94.937 237 11 1 3 239 442383067 442383302 2.750000e-98 370.0
46 TraesCS3B01G375200 chr5B 94.515 237 11 2 3 239 51015169 51014935 1.280000e-96 364.0
47 TraesCS3B01G375200 chr5B 94.000 50 3 0 5262 5311 434423107 434423156 6.710000e-10 76.8
48 TraesCS3B01G375200 chr5B 93.878 49 3 0 5263 5311 434693902 434693950 2.410000e-09 75.0
49 TraesCS3B01G375200 chr5B 88.000 50 5 1 550 598 707703094 707703045 2.430000e-04 58.4
50 TraesCS3B01G375200 chr4B 94.515 237 13 0 3 239 240138804 240138568 3.550000e-97 366.0
51 TraesCS3B01G375200 chr4B 94.515 237 11 2 4 239 661469403 661469638 1.280000e-96 364.0
52 TraesCS3B01G375200 chr4B 93.213 221 12 3 6019 6238 315061645 315061863 7.800000e-84 322.0
53 TraesCS3B01G375200 chr2D 95.434 219 9 1 6021 6238 458741512 458741730 1.290000e-91 348.0
54 TraesCS3B01G375200 chr1D 92.273 220 15 2 6021 6238 340541998 340541779 1.690000e-80 311.0
55 TraesCS3B01G375200 chr5A 82.723 191 33 0 5771 5961 30453897 30453707 2.990000e-38 171.0
56 TraesCS3B01G375200 chr2A 82.979 188 32 0 5774 5961 707490564 707490377 2.990000e-38 171.0
57 TraesCS3B01G375200 chr6A 82.723 191 29 4 5774 5962 567179370 567179558 3.870000e-37 167.0
58 TraesCS3B01G375200 chr1A 82.011 189 32 2 5775 5962 251950480 251950667 6.470000e-35 159.0
59 TraesCS3B01G375200 chr1A 88.095 84 7 3 544 626 473033765 473033846 5.150000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G375200 chr3B 588858484 588864721 6237 False 11520.000000 11520 100.000000 1 6238 1 chr3B.!!$F2 6237
1 TraesCS3B01G375200 chr3B 214445175 214445783 608 True 621.000000 621 85.089000 2636 3251 1 chr3B.!!$R1 615
2 TraesCS3B01G375200 chr3D 448630021 448634850 4829 False 1412.200000 3264 92.719800 239 5480 5 chr3D.!!$F3 5241
3 TraesCS3B01G375200 chr3D 498891533 498892101 568 False 680.000000 680 88.266000 2636 3205 1 chr3D.!!$F2 569
4 TraesCS3B01G375200 chr3A 589908340 589915462 7122 False 900.277778 2878 91.625667 239 6026 9 chr3A.!!$F1 5787
5 TraesCS3B01G375200 chr2B 28628504 28629120 616 True 1053.000000 1053 97.419000 2636 3255 1 chr2B.!!$R1 619
6 TraesCS3B01G375200 chr2B 401817547 401818159 612 True 689.000000 689 86.971000 2639 3251 1 chr2B.!!$R3 612
7 TraesCS3B01G375200 chr6B 41978633 41979251 618 False 920.000000 920 93.569000 2638 3255 1 chr6B.!!$F1 617
8 TraesCS3B01G375200 chr6B 21830616 21831230 614 True 693.000000 693 87.013000 2636 3251 1 chr6B.!!$R1 615
9 TraesCS3B01G375200 chr5D 534009629 534010253 624 True 732.000000 732 87.917000 2636 3259 1 chr5D.!!$R3 623
10 TraesCS3B01G375200 chr7D 616101195 616101821 626 True 664.000000 664 85.871000 2636 3266 1 chr7D.!!$R1 630
11 TraesCS3B01G375200 chr7B 244599192 244599824 632 True 641.000000 641 85.086000 2636 3266 1 chr7B.!!$R2 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.106149 ACCGGTTGAAGATATCCCGC 59.894 55.000 0.00 0.00 37.37 6.13 F
205 206 0.249911 GGTTGAAGATATCCCGCGCT 60.250 55.000 5.56 0.00 0.00 5.92 F
227 228 0.390860 CATCTCCCACCGGACAGATC 59.609 60.000 9.46 0.00 33.32 2.75 F
1133 1163 0.675633 CAGTGGGAGCAACAAAAGGG 59.324 55.000 0.00 0.00 0.00 3.95 F
1185 1215 1.002868 CCCAGGAGCACACCAAGAG 60.003 63.158 0.00 0.00 0.00 2.85 F
2167 2266 2.481185 TGATCGTTTCAGGGTTTTACGC 59.519 45.455 0.00 0.00 32.65 4.42 F
3261 3370 0.178301 GGGGAGGCTGTAGTGTAAGC 59.822 60.000 0.00 0.00 38.76 3.09 F
4580 4890 0.107066 ACATGGCCTCATCGATGCAA 60.107 50.000 20.81 2.88 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1020 1037 1.138069 CCCGGCAAAAACCTTCAAGTT 59.862 47.619 0.00 0.0 0.00 2.66 R
1311 1342 2.224066 ACGAGAACCAGCCATACATAGC 60.224 50.000 0.00 0.0 0.00 2.97 R
1488 1533 2.632512 TGTGTAGTCTGTTCTCATGCCA 59.367 45.455 0.00 0.0 0.00 4.92 R
2253 2352 0.525668 CGCGAACCACAGGTAGCTAG 60.526 60.000 0.00 0.0 37.34 3.42 R
2626 2729 1.132199 CGTATTCGCGACGACTGCTT 61.132 55.000 9.15 0.0 42.98 3.91 R
3560 3694 0.106918 AGTTTTGCTTCCCCGTCACA 60.107 50.000 0.00 0.0 0.00 3.58 R
5033 6192 0.258774 GCATGTCTAACCCCCACCAT 59.741 55.000 0.00 0.0 0.00 3.55 R
6209 8578 0.035630 ACTTCTCTGTGATGCAGGGC 60.036 55.000 0.00 0.0 45.27 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.804688 TGCGGCCACATTTATTATAAAATAAC 57.195 30.769 2.24 0.00 37.30 1.89
26 27 8.414003 TGCGGCCACATTTATTATAAAATAACA 58.586 29.630 2.24 0.00 37.30 2.41
27 28 8.911662 GCGGCCACATTTATTATAAAATAACAG 58.088 33.333 2.24 0.00 37.30 3.16
41 42 8.706322 ATAAAATAACAGAGGTTCAACAAGGT 57.294 30.769 0.00 0.00 38.45 3.50
42 43 6.635030 AAATAACAGAGGTTCAACAAGGTC 57.365 37.500 0.00 0.00 38.45 3.85
43 44 3.933861 AACAGAGGTTCAACAAGGTCT 57.066 42.857 0.00 0.00 29.00 3.85
44 45 3.477210 ACAGAGGTTCAACAAGGTCTC 57.523 47.619 0.00 0.00 0.00 3.36
45 46 2.771943 ACAGAGGTTCAACAAGGTCTCA 59.228 45.455 0.00 0.00 0.00 3.27
46 47 3.199946 ACAGAGGTTCAACAAGGTCTCAA 59.800 43.478 0.00 0.00 0.00 3.02
47 48 4.199310 CAGAGGTTCAACAAGGTCTCAAA 58.801 43.478 0.00 0.00 0.00 2.69
48 49 4.640201 CAGAGGTTCAACAAGGTCTCAAAA 59.360 41.667 0.00 0.00 0.00 2.44
49 50 5.300286 CAGAGGTTCAACAAGGTCTCAAAAT 59.700 40.000 0.00 0.00 0.00 1.82
50 51 5.532779 AGAGGTTCAACAAGGTCTCAAAATC 59.467 40.000 0.00 0.00 0.00 2.17
51 52 5.449553 AGGTTCAACAAGGTCTCAAAATCT 58.550 37.500 0.00 0.00 0.00 2.40
52 53 5.300286 AGGTTCAACAAGGTCTCAAAATCTG 59.700 40.000 0.00 0.00 0.00 2.90
53 54 4.836125 TCAACAAGGTCTCAAAATCTGC 57.164 40.909 0.00 0.00 0.00 4.26
54 55 4.206375 TCAACAAGGTCTCAAAATCTGCA 58.794 39.130 0.00 0.00 0.00 4.41
55 56 4.644234 TCAACAAGGTCTCAAAATCTGCAA 59.356 37.500 0.00 0.00 0.00 4.08
56 57 5.126869 TCAACAAGGTCTCAAAATCTGCAAA 59.873 36.000 0.00 0.00 0.00 3.68
57 58 4.936891 ACAAGGTCTCAAAATCTGCAAAC 58.063 39.130 0.00 0.00 0.00 2.93
58 59 4.402155 ACAAGGTCTCAAAATCTGCAAACA 59.598 37.500 0.00 0.00 0.00 2.83
59 60 5.105392 ACAAGGTCTCAAAATCTGCAAACAA 60.105 36.000 0.00 0.00 0.00 2.83
60 61 5.596836 AGGTCTCAAAATCTGCAAACAAA 57.403 34.783 0.00 0.00 0.00 2.83
61 62 5.976458 AGGTCTCAAAATCTGCAAACAAAA 58.024 33.333 0.00 0.00 0.00 2.44
62 63 6.044682 AGGTCTCAAAATCTGCAAACAAAAG 58.955 36.000 0.00 0.00 0.00 2.27
63 64 5.277011 GGTCTCAAAATCTGCAAACAAAAGC 60.277 40.000 0.00 0.00 0.00 3.51
64 65 5.291614 GTCTCAAAATCTGCAAACAAAAGCA 59.708 36.000 0.00 0.00 39.25 3.91
65 66 5.873712 TCTCAAAATCTGCAAACAAAAGCAA 59.126 32.000 0.00 0.00 40.73 3.91
66 67 6.370994 TCTCAAAATCTGCAAACAAAAGCAAA 59.629 30.769 0.00 0.00 40.73 3.68
67 68 6.544622 TCAAAATCTGCAAACAAAAGCAAAG 58.455 32.000 0.00 0.00 40.73 2.77
68 69 5.488645 AAATCTGCAAACAAAAGCAAAGG 57.511 34.783 0.00 0.00 40.73 3.11
69 70 2.278854 TCTGCAAACAAAAGCAAAGGC 58.721 42.857 0.00 0.00 40.73 4.35
80 81 2.932663 GCAAAGGCTAGCTCACACA 58.067 52.632 15.72 0.00 36.96 3.72
81 82 0.801251 GCAAAGGCTAGCTCACACAG 59.199 55.000 15.72 0.00 36.96 3.66
82 83 1.609061 GCAAAGGCTAGCTCACACAGA 60.609 52.381 15.72 0.00 36.96 3.41
83 84 3.504199 GCAAAGGCTAGCTCACACAGAG 61.504 54.545 15.72 0.00 41.44 3.35
92 93 1.155042 CTCACACAGAGCCTCAAAGC 58.845 55.000 0.00 0.00 37.59 3.51
93 94 0.250467 TCACACAGAGCCTCAAAGCC 60.250 55.000 0.00 0.00 0.00 4.35
94 95 0.535780 CACACAGAGCCTCAAAGCCA 60.536 55.000 0.00 0.00 0.00 4.75
95 96 0.183492 ACACAGAGCCTCAAAGCCAA 59.817 50.000 0.00 0.00 0.00 4.52
96 97 1.321474 CACAGAGCCTCAAAGCCAAA 58.679 50.000 0.00 0.00 0.00 3.28
97 98 1.682854 CACAGAGCCTCAAAGCCAAAA 59.317 47.619 0.00 0.00 0.00 2.44
98 99 1.683385 ACAGAGCCTCAAAGCCAAAAC 59.317 47.619 0.00 0.00 0.00 2.43
99 100 1.682854 CAGAGCCTCAAAGCCAAAACA 59.317 47.619 0.00 0.00 0.00 2.83
100 101 2.101249 CAGAGCCTCAAAGCCAAAACAA 59.899 45.455 0.00 0.00 0.00 2.83
101 102 2.765699 AGAGCCTCAAAGCCAAAACAAA 59.234 40.909 0.00 0.00 0.00 2.83
102 103 3.197549 AGAGCCTCAAAGCCAAAACAAAA 59.802 39.130 0.00 0.00 0.00 2.44
103 104 3.938334 GAGCCTCAAAGCCAAAACAAAAA 59.062 39.130 0.00 0.00 0.00 1.94
104 105 3.940852 AGCCTCAAAGCCAAAACAAAAAG 59.059 39.130 0.00 0.00 0.00 2.27
105 106 3.487376 GCCTCAAAGCCAAAACAAAAAGC 60.487 43.478 0.00 0.00 0.00 3.51
106 107 3.065233 CCTCAAAGCCAAAACAAAAAGCC 59.935 43.478 0.00 0.00 0.00 4.35
107 108 3.013219 TCAAAGCCAAAACAAAAAGCCC 58.987 40.909 0.00 0.00 0.00 5.19
108 109 2.751806 CAAAGCCAAAACAAAAAGCCCA 59.248 40.909 0.00 0.00 0.00 5.36
109 110 2.797177 AGCCAAAACAAAAAGCCCAA 57.203 40.000 0.00 0.00 0.00 4.12
110 111 2.364632 AGCCAAAACAAAAAGCCCAAC 58.635 42.857 0.00 0.00 0.00 3.77
111 112 2.087646 GCCAAAACAAAAAGCCCAACA 58.912 42.857 0.00 0.00 0.00 3.33
112 113 2.489722 GCCAAAACAAAAAGCCCAACAA 59.510 40.909 0.00 0.00 0.00 2.83
113 114 3.427368 GCCAAAACAAAAAGCCCAACAAG 60.427 43.478 0.00 0.00 0.00 3.16
114 115 3.427368 CCAAAACAAAAAGCCCAACAAGC 60.427 43.478 0.00 0.00 0.00 4.01
115 116 2.036958 AACAAAAAGCCCAACAAGCC 57.963 45.000 0.00 0.00 0.00 4.35
116 117 0.908198 ACAAAAAGCCCAACAAGCCA 59.092 45.000 0.00 0.00 0.00 4.75
117 118 1.298602 CAAAAAGCCCAACAAGCCAC 58.701 50.000 0.00 0.00 0.00 5.01
118 119 0.908198 AAAAAGCCCAACAAGCCACA 59.092 45.000 0.00 0.00 0.00 4.17
119 120 0.908198 AAAAGCCCAACAAGCCACAA 59.092 45.000 0.00 0.00 0.00 3.33
120 121 0.177836 AAAGCCCAACAAGCCACAAC 59.822 50.000 0.00 0.00 0.00 3.32
121 122 1.685355 AAGCCCAACAAGCCACAACC 61.685 55.000 0.00 0.00 0.00 3.77
122 123 2.727544 CCCAACAAGCCACAACCG 59.272 61.111 0.00 0.00 0.00 4.44
123 124 2.727544 CCAACAAGCCACAACCGG 59.272 61.111 0.00 0.00 0.00 5.28
131 132 3.222855 CCACAACCGGCAGGCAAA 61.223 61.111 0.00 0.00 42.76 3.68
132 133 2.790791 CCACAACCGGCAGGCAAAA 61.791 57.895 0.00 0.00 42.76 2.44
133 134 1.367102 CACAACCGGCAGGCAAAAT 59.633 52.632 0.00 0.00 42.76 1.82
134 135 0.600557 CACAACCGGCAGGCAAAATA 59.399 50.000 0.00 0.00 42.76 1.40
135 136 1.000283 CACAACCGGCAGGCAAAATAA 60.000 47.619 0.00 0.00 42.76 1.40
136 137 1.689273 ACAACCGGCAGGCAAAATAAA 59.311 42.857 0.00 0.00 42.76 1.40
137 138 2.103263 ACAACCGGCAGGCAAAATAAAA 59.897 40.909 0.00 0.00 42.76 1.52
138 139 2.736192 CAACCGGCAGGCAAAATAAAAG 59.264 45.455 0.00 0.00 42.76 2.27
139 140 2.243810 ACCGGCAGGCAAAATAAAAGA 58.756 42.857 0.00 0.00 42.76 2.52
140 141 2.831526 ACCGGCAGGCAAAATAAAAGAT 59.168 40.909 0.00 0.00 42.76 2.40
141 142 4.020543 ACCGGCAGGCAAAATAAAAGATA 58.979 39.130 0.00 0.00 42.76 1.98
142 143 4.097892 ACCGGCAGGCAAAATAAAAGATAG 59.902 41.667 0.00 0.00 42.76 2.08
143 144 4.499696 CCGGCAGGCAAAATAAAAGATAGG 60.500 45.833 0.00 0.00 0.00 2.57
144 145 4.097892 CGGCAGGCAAAATAAAAGATAGGT 59.902 41.667 0.00 0.00 0.00 3.08
145 146 5.298276 CGGCAGGCAAAATAAAAGATAGGTA 59.702 40.000 0.00 0.00 0.00 3.08
146 147 6.183360 CGGCAGGCAAAATAAAAGATAGGTAA 60.183 38.462 0.00 0.00 0.00 2.85
147 148 7.552459 GGCAGGCAAAATAAAAGATAGGTAAA 58.448 34.615 0.00 0.00 0.00 2.01
148 149 7.491372 GGCAGGCAAAATAAAAGATAGGTAAAC 59.509 37.037 0.00 0.00 0.00 2.01
149 150 8.251026 GCAGGCAAAATAAAAGATAGGTAAACT 58.749 33.333 0.00 0.00 0.00 2.66
175 176 8.839310 AATTGCCTATCCTATTATATGATCGC 57.161 34.615 0.00 0.00 0.00 4.58
176 177 6.346477 TGCCTATCCTATTATATGATCGCC 57.654 41.667 0.00 0.00 0.00 5.54
177 178 5.838521 TGCCTATCCTATTATATGATCGCCA 59.161 40.000 0.00 0.00 0.00 5.69
178 179 6.498303 TGCCTATCCTATTATATGATCGCCAT 59.502 38.462 0.00 0.00 39.25 4.40
179 180 7.038659 GCCTATCCTATTATATGATCGCCATC 58.961 42.308 0.00 0.00 36.71 3.51
180 181 7.551585 CCTATCCTATTATATGATCGCCATCC 58.448 42.308 0.00 0.00 36.71 3.51
181 182 7.179160 CCTATCCTATTATATGATCGCCATCCA 59.821 40.741 0.00 0.00 36.71 3.41
182 183 6.806668 TCCTATTATATGATCGCCATCCAA 57.193 37.500 0.00 0.00 36.71 3.53
183 184 7.194112 TCCTATTATATGATCGCCATCCAAA 57.806 36.000 0.00 0.00 36.71 3.28
184 185 7.047891 TCCTATTATATGATCGCCATCCAAAC 58.952 38.462 0.00 0.00 36.71 2.93
185 186 6.260936 CCTATTATATGATCGCCATCCAAACC 59.739 42.308 0.00 0.00 36.71 3.27
186 187 1.877637 TATGATCGCCATCCAAACCG 58.122 50.000 0.00 0.00 36.71 4.44
187 188 0.819259 ATGATCGCCATCCAAACCGG 60.819 55.000 0.00 0.00 0.00 5.28
188 189 1.451387 GATCGCCATCCAAACCGGT 60.451 57.895 0.00 0.00 35.57 5.28
189 190 1.001393 ATCGCCATCCAAACCGGTT 60.001 52.632 15.86 15.86 35.57 4.44
190 191 1.312371 ATCGCCATCCAAACCGGTTG 61.312 55.000 23.08 14.70 36.94 3.77
191 192 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
192 193 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
193 194 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
194 195 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
195 196 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
196 197 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
197 198 4.207165 CCATCCAAACCGGTTGAAGATAT 58.793 43.478 23.08 6.33 39.87 1.63
198 199 4.275936 CCATCCAAACCGGTTGAAGATATC 59.724 45.833 23.08 0.00 39.87 1.63
199 200 3.881220 TCCAAACCGGTTGAAGATATCC 58.119 45.455 23.08 0.00 39.87 2.59
200 201 2.949644 CCAAACCGGTTGAAGATATCCC 59.050 50.000 23.08 0.00 39.87 3.85
201 202 2.612212 CAAACCGGTTGAAGATATCCCG 59.388 50.000 23.08 9.61 39.87 5.14
202 203 0.106149 ACCGGTTGAAGATATCCCGC 59.894 55.000 0.00 0.00 37.37 6.13
203 204 0.944311 CCGGTTGAAGATATCCCGCG 60.944 60.000 10.77 0.00 37.37 6.46
204 205 1.557443 CGGTTGAAGATATCCCGCGC 61.557 60.000 0.00 0.00 0.00 6.86
205 206 0.249911 GGTTGAAGATATCCCGCGCT 60.250 55.000 5.56 0.00 0.00 5.92
206 207 1.000506 GGTTGAAGATATCCCGCGCTA 59.999 52.381 5.56 0.00 0.00 4.26
207 208 2.059541 GTTGAAGATATCCCGCGCTAC 58.940 52.381 5.56 0.00 0.00 3.58
208 209 0.601558 TGAAGATATCCCGCGCTACC 59.398 55.000 5.56 0.00 0.00 3.18
209 210 0.601558 GAAGATATCCCGCGCTACCA 59.398 55.000 5.56 0.00 0.00 3.25
210 211 1.204941 GAAGATATCCCGCGCTACCAT 59.795 52.381 5.56 0.00 0.00 3.55
211 212 0.818296 AGATATCCCGCGCTACCATC 59.182 55.000 5.56 1.77 0.00 3.51
212 213 0.818296 GATATCCCGCGCTACCATCT 59.182 55.000 5.56 0.00 0.00 2.90
213 214 0.818296 ATATCCCGCGCTACCATCTC 59.182 55.000 5.56 0.00 0.00 2.75
214 215 1.248785 TATCCCGCGCTACCATCTCC 61.249 60.000 5.56 0.00 0.00 3.71
215 216 4.301027 CCCGCGCTACCATCTCCC 62.301 72.222 5.56 0.00 0.00 4.30
216 217 3.536917 CCGCGCTACCATCTCCCA 61.537 66.667 5.56 0.00 0.00 4.37
217 218 2.279517 CGCGCTACCATCTCCCAC 60.280 66.667 5.56 0.00 0.00 4.61
218 219 2.109181 GCGCTACCATCTCCCACC 59.891 66.667 0.00 0.00 0.00 4.61
219 220 2.417516 CGCTACCATCTCCCACCG 59.582 66.667 0.00 0.00 0.00 4.94
220 221 2.822399 GCTACCATCTCCCACCGG 59.178 66.667 0.00 0.00 0.00 5.28
221 222 1.760875 GCTACCATCTCCCACCGGA 60.761 63.158 9.46 0.00 36.45 5.14
222 223 2.029307 GCTACCATCTCCCACCGGAC 62.029 65.000 9.46 0.00 33.32 4.79
223 224 0.686441 CTACCATCTCCCACCGGACA 60.686 60.000 9.46 0.00 33.32 4.02
224 225 0.686441 TACCATCTCCCACCGGACAG 60.686 60.000 9.46 0.00 33.32 3.51
225 226 1.685765 CCATCTCCCACCGGACAGA 60.686 63.158 9.46 3.41 33.32 3.41
226 227 1.050988 CCATCTCCCACCGGACAGAT 61.051 60.000 9.46 5.91 33.32 2.90
227 228 0.390860 CATCTCCCACCGGACAGATC 59.609 60.000 9.46 0.00 33.32 2.75
228 229 0.760945 ATCTCCCACCGGACAGATCC 60.761 60.000 9.46 0.00 42.28 3.36
229 230 1.685765 CTCCCACCGGACAGATCCA 60.686 63.158 9.46 0.00 46.67 3.41
230 231 1.680522 CTCCCACCGGACAGATCCAG 61.681 65.000 9.46 0.00 46.67 3.86
231 232 1.990060 CCCACCGGACAGATCCAGT 60.990 63.158 9.46 0.00 46.67 4.00
232 233 0.686441 CCCACCGGACAGATCCAGTA 60.686 60.000 9.46 0.00 46.67 2.74
233 234 1.191535 CCACCGGACAGATCCAGTAA 58.808 55.000 9.46 0.00 46.67 2.24
234 235 1.134788 CCACCGGACAGATCCAGTAAC 60.135 57.143 9.46 0.00 46.67 2.50
235 236 1.134788 CACCGGACAGATCCAGTAACC 60.135 57.143 9.46 0.00 46.67 2.85
236 237 1.191535 CCGGACAGATCCAGTAACCA 58.808 55.000 0.00 0.00 46.67 3.67
237 238 1.553248 CCGGACAGATCCAGTAACCAA 59.447 52.381 0.00 0.00 46.67 3.67
333 334 3.541632 TGAGACAAAGACCCAAAGACAC 58.458 45.455 0.00 0.00 0.00 3.67
360 362 3.158537 TTTGCTCACGACGCCCTGA 62.159 57.895 0.00 0.00 0.00 3.86
389 391 5.416013 GGATGTAGGAGGAAGAAAACTTTGG 59.584 44.000 0.00 0.00 0.00 3.28
411 413 4.686091 GGCAACTCTAAAACTTTGGAATGC 59.314 41.667 13.23 13.23 38.57 3.56
430 432 6.238347 GGAATGCTTTTCAATTCGGTGTTTTT 60.238 34.615 3.03 0.00 0.00 1.94
531 541 6.102897 AGCAGCCGGGATATCAATATATAC 57.897 41.667 2.18 0.00 0.00 1.47
532 542 5.841237 AGCAGCCGGGATATCAATATATACT 59.159 40.000 2.18 0.00 30.53 2.12
581 592 5.821204 ACTTGTTGCAGCTTTAGTACAAAG 58.179 37.500 1.17 11.27 0.00 2.77
583 594 5.828299 TGTTGCAGCTTTAGTACAAAGTT 57.172 34.783 14.90 9.23 0.00 2.66
584 595 6.202516 TGTTGCAGCTTTAGTACAAAGTTT 57.797 33.333 14.90 0.00 0.00 2.66
585 596 6.033341 TGTTGCAGCTTTAGTACAAAGTTTG 58.967 36.000 14.13 14.13 0.00 2.93
587 598 6.928979 TGCAGCTTTAGTACAAAGTTTGTA 57.071 33.333 21.79 21.79 43.27 2.41
600 611 5.460748 ACAAAGTTTGTACTAAAAATGCGGC 59.539 36.000 19.59 0.00 43.27 6.53
601 612 4.839668 AGTTTGTACTAAAAATGCGGCA 57.160 36.364 4.58 4.58 31.21 5.69
602 613 5.189659 AGTTTGTACTAAAAATGCGGCAA 57.810 34.783 6.82 0.00 31.21 4.52
603 614 5.219633 AGTTTGTACTAAAAATGCGGCAAG 58.780 37.500 6.82 1.29 31.21 4.01
604 615 4.839668 TTGTACTAAAAATGCGGCAAGT 57.160 36.364 6.82 8.19 0.00 3.16
605 616 5.943706 TTGTACTAAAAATGCGGCAAGTA 57.056 34.783 6.82 7.09 0.00 2.24
606 617 5.943706 TGTACTAAAAATGCGGCAAGTAA 57.056 34.783 6.82 0.00 0.00 2.24
607 618 6.503589 TGTACTAAAAATGCGGCAAGTAAT 57.496 33.333 6.82 0.00 0.00 1.89
608 619 7.612668 TGTACTAAAAATGCGGCAAGTAATA 57.387 32.000 6.82 0.36 0.00 0.98
609 620 8.215926 TGTACTAAAAATGCGGCAAGTAATAT 57.784 30.769 6.82 0.00 0.00 1.28
610 621 9.327628 TGTACTAAAAATGCGGCAAGTAATATA 57.672 29.630 6.82 0.00 0.00 0.86
611 622 9.807386 GTACTAAAAATGCGGCAAGTAATATAG 57.193 33.333 6.82 6.38 0.00 1.31
612 623 8.671384 ACTAAAAATGCGGCAAGTAATATAGA 57.329 30.769 6.82 0.00 0.00 1.98
613 624 9.284968 ACTAAAAATGCGGCAAGTAATATAGAT 57.715 29.630 6.82 0.00 0.00 1.98
614 625 9.760660 CTAAAAATGCGGCAAGTAATATAGATC 57.239 33.333 6.82 0.00 0.00 2.75
615 626 7.744087 AAAATGCGGCAAGTAATATAGATCA 57.256 32.000 6.82 0.00 0.00 2.92
616 627 6.974932 AATGCGGCAAGTAATATAGATCAG 57.025 37.500 6.82 0.00 0.00 2.90
617 628 5.722021 TGCGGCAAGTAATATAGATCAGA 57.278 39.130 0.00 0.00 0.00 3.27
618 629 5.714047 TGCGGCAAGTAATATAGATCAGAG 58.286 41.667 0.00 0.00 0.00 3.35
619 630 5.476945 TGCGGCAAGTAATATAGATCAGAGA 59.523 40.000 0.00 0.00 0.00 3.10
895 912 1.215244 CAGACCGCAGAGCATATGTG 58.785 55.000 4.29 0.00 0.00 3.21
1020 1037 2.429930 CCGACCAACTGCCAGGAA 59.570 61.111 0.00 0.00 0.00 3.36
1133 1163 0.675633 CAGTGGGAGCAACAAAAGGG 59.324 55.000 0.00 0.00 0.00 3.95
1185 1215 1.002868 CCCAGGAGCACACCAAGAG 60.003 63.158 0.00 0.00 0.00 2.85
1284 1314 8.038944 AGCTAAGCATGTGAATGAAATGATTTT 58.961 29.630 0.00 0.00 32.59 1.82
1311 1342 2.807676 AGGTTTGGGGTATTGAAGCAG 58.192 47.619 0.00 0.00 0.00 4.24
1316 1348 3.213206 TGGGGTATTGAAGCAGCTATG 57.787 47.619 0.00 0.00 0.00 2.23
1407 1450 4.201960 GGTTAGTACGTCCTACTTGCTACC 60.202 50.000 0.00 0.00 36.95 3.18
1424 1467 8.709308 ACTTGCTACCTGTGATATATTCTCTTT 58.291 33.333 0.00 0.00 0.00 2.52
1663 1708 6.183360 TGGATGTATCTGATGCAAACATTGTC 60.183 38.462 12.38 4.01 36.35 3.18
1800 1891 9.072375 TGTTTGATTTGTAGGAATCATACAACA 57.928 29.630 18.42 12.18 45.87 3.33
1801 1892 9.559958 GTTTGATTTGTAGGAATCATACAACAG 57.440 33.333 18.42 0.00 43.43 3.16
1803 1894 9.513906 TTGATTTGTAGGAATCATACAACAGAA 57.486 29.630 18.42 9.38 43.43 3.02
1804 1895 8.946085 TGATTTGTAGGAATCATACAACAGAAC 58.054 33.333 18.42 5.83 41.53 3.01
1887 1983 7.012989 ACCTCAGTTATACAAAGAAAACACACC 59.987 37.037 0.00 0.00 0.00 4.16
1908 2004 3.063045 CCCCTTTACGCTCGAAAACATAC 59.937 47.826 0.00 0.00 0.00 2.39
1937 2035 6.494666 TGGGTTAATTAGGGTCTCACATAG 57.505 41.667 0.00 0.00 0.00 2.23
2167 2266 2.481185 TGATCGTTTCAGGGTTTTACGC 59.519 45.455 0.00 0.00 32.65 4.42
2218 2317 7.299246 ACGCAAAGGGTTGATATATACTACT 57.701 36.000 0.00 0.00 36.83 2.57
2253 2352 5.444122 GTTTATTAGATTGATCTGCCGTGC 58.556 41.667 3.79 0.00 37.76 5.34
2362 2461 5.763088 TGCAATTAACAAGCGTAATGAACA 58.237 33.333 0.00 0.00 0.00 3.18
2615 2718 6.588756 CCTGGTCACATTTTTGAAGATGAATG 59.411 38.462 1.76 0.00 36.00 2.67
2629 2732 8.648557 TGAAGATGAATGTATGTAGTGTAAGC 57.351 34.615 0.00 0.00 0.00 3.09
2630 2733 8.257306 TGAAGATGAATGTATGTAGTGTAAGCA 58.743 33.333 0.00 0.00 0.00 3.91
2631 2734 8.654230 AAGATGAATGTATGTAGTGTAAGCAG 57.346 34.615 0.00 0.00 0.00 4.24
2632 2735 7.786030 AGATGAATGTATGTAGTGTAAGCAGT 58.214 34.615 0.00 0.00 0.00 4.40
2633 2736 7.923344 AGATGAATGTATGTAGTGTAAGCAGTC 59.077 37.037 0.00 0.00 0.00 3.51
2634 2737 6.033966 TGAATGTATGTAGTGTAAGCAGTCG 58.966 40.000 0.00 0.00 0.00 4.18
2680 2783 6.128445 CGTATCATTGCATTGATAGGAGGAAC 60.128 42.308 29.80 19.28 42.75 3.62
2967 3071 2.157989 AGGAACCAGACCTAGGGTTTCT 60.158 50.000 14.81 8.61 46.05 2.52
3251 3360 2.220786 ATCTGGCAAAGGGGAGGCTG 62.221 60.000 0.00 0.00 0.00 4.85
3252 3361 3.185203 TGGCAAAGGGGAGGCTGT 61.185 61.111 0.00 0.00 0.00 4.40
3253 3362 1.850289 TGGCAAAGGGGAGGCTGTA 60.850 57.895 0.00 0.00 0.00 2.74
3254 3363 1.077429 GGCAAAGGGGAGGCTGTAG 60.077 63.158 0.00 0.00 0.00 2.74
3255 3364 1.685820 GCAAAGGGGAGGCTGTAGT 59.314 57.895 0.00 0.00 0.00 2.73
3261 3370 0.178301 GGGGAGGCTGTAGTGTAAGC 59.822 60.000 0.00 0.00 38.76 3.09
3315 3424 9.840427 ATTTTGTTCCGAGACTGTTAAATAATG 57.160 29.630 0.00 0.00 0.00 1.90
3317 3426 5.353123 TGTTCCGAGACTGTTAAATAATGCC 59.647 40.000 0.00 0.00 0.00 4.40
3321 3430 6.929049 TCCGAGACTGTTAAATAATGCCTATG 59.071 38.462 0.00 0.00 0.00 2.23
3353 3462 9.760077 TCTTGAAAAATATATTCTCCCTACGAC 57.240 33.333 0.00 0.00 0.00 4.34
3362 3471 9.947189 ATATATTCTCCCTACGACCCATATTAA 57.053 33.333 0.00 0.00 0.00 1.40
3369 3478 5.048991 CCCTACGACCCATATTAATTGTTGC 60.049 44.000 0.00 0.00 0.00 4.17
3370 3479 4.911514 ACGACCCATATTAATTGTTGCC 57.088 40.909 0.00 0.00 0.00 4.52
3371 3480 4.274147 ACGACCCATATTAATTGTTGCCA 58.726 39.130 0.00 0.00 0.00 4.92
3377 3486 9.606631 GACCCATATTAATTGTTGCCAATTTAA 57.393 29.630 6.29 1.51 46.61 1.52
3412 3540 9.125026 GCGATAATTAATATGGATCAAAGGGAT 57.875 33.333 0.00 0.00 39.53 3.85
3464 3598 6.226787 AGGCAATGAGTCATACTAAGTATGC 58.773 40.000 5.94 9.60 43.72 3.14
3473 3607 5.983720 GTCATACTAAGTATGCAACATCCGT 59.016 40.000 0.00 0.00 43.72 4.69
3475 3609 7.650504 GTCATACTAAGTATGCAACATCCGTAA 59.349 37.037 0.00 0.00 43.72 3.18
3549 3683 6.923199 AATCTCACATCTGGGAAAATTTGT 57.077 33.333 0.00 0.00 27.67 2.83
3552 3686 8.599624 ATCTCACATCTGGGAAAATTTGTAAT 57.400 30.769 0.00 0.00 27.67 1.89
3560 3694 4.290722 TGGGAAAATTTGTAATTGGGCCAT 59.709 37.500 7.26 0.00 0.00 4.40
3569 3704 3.660422 ATTGGGCCATGTGACGGGG 62.660 63.158 7.26 0.00 0.00 5.73
3611 3746 1.337118 TTGTGGGATTGGTTTCAGCC 58.663 50.000 0.00 0.00 0.00 4.85
3628 3763 1.944709 AGCCGAAACTAAACACACCAC 59.055 47.619 0.00 0.00 0.00 4.16
3629 3764 1.944709 GCCGAAACTAAACACACCACT 59.055 47.619 0.00 0.00 0.00 4.00
3632 3767 4.035441 GCCGAAACTAAACACACCACTAAA 59.965 41.667 0.00 0.00 0.00 1.85
3633 3768 5.744490 CCGAAACTAAACACACCACTAAAG 58.256 41.667 0.00 0.00 0.00 1.85
3634 3769 5.202640 CGAAACTAAACACACCACTAAAGC 58.797 41.667 0.00 0.00 0.00 3.51
3742 3877 7.719778 TTGAACTGCAAGATACTAGCATATG 57.280 36.000 0.00 0.00 37.68 1.78
3749 3884 7.323420 TGCAAGATACTAGCATATGGTACATC 58.677 38.462 10.55 14.50 36.76 3.06
3771 3906 1.067495 AGCTAGTCCAAACTCGACTGC 60.067 52.381 0.80 3.31 40.75 4.40
3781 3916 4.373116 TCGACTGCGCCTTGGACC 62.373 66.667 4.18 0.00 37.46 4.46
3794 3929 2.830923 CCTTGGACCAATTTGGCACATA 59.169 45.455 15.49 5.39 42.67 2.29
3798 3933 6.403866 TTGGACCAATTTGGCACATATATC 57.596 37.500 15.49 2.90 42.67 1.63
3903 4193 1.381928 TAGCACCTCCGAGCTAACCG 61.382 60.000 0.00 0.00 40.15 4.44
3916 4206 4.677250 CGAGCTAACCGTAAGAGAAATGGT 60.677 45.833 0.00 0.00 37.87 3.55
3949 4242 7.807977 ACCAAAAAGAGCTATATGGTATGTG 57.192 36.000 10.63 0.00 39.29 3.21
3985 4286 1.272425 CCCTCACATGGTGGGCTTTAA 60.272 52.381 6.94 0.00 43.05 1.52
3986 4287 2.094675 CCTCACATGGTGGGCTTTAAG 58.905 52.381 0.00 0.00 31.76 1.85
4018 4319 7.831193 ACTTCTATCACAGCTGGAAAATTATGT 59.169 33.333 19.93 4.35 0.00 2.29
4111 4417 4.160065 CCAACATTGTGCATTTGGGATCTA 59.840 41.667 0.00 0.00 35.76 1.98
4217 4527 6.365839 CCACATTGTGATATCGAAAGCATAC 58.634 40.000 18.33 0.00 35.23 2.39
4231 4541 0.179084 GCATACGGCAGTGCTCCTTA 60.179 55.000 16.11 1.70 43.97 2.69
4255 4565 4.645535 AGCTAATGATACATGTCGGCAAT 58.354 39.130 0.00 0.00 0.00 3.56
4264 4574 7.635423 TGATACATGTCGGCAATATTAACAAC 58.365 34.615 0.00 0.00 0.00 3.32
4332 4642 3.445096 CCAAGTTTTTGCCTAGCTAGCAT 59.555 43.478 18.83 4.67 40.59 3.79
4580 4890 0.107066 ACATGGCCTCATCGATGCAA 60.107 50.000 20.81 2.88 0.00 4.08
4798 5111 3.181967 CAGTGCGTCGCTGGCTAC 61.182 66.667 19.50 7.67 38.21 3.58
4820 5133 0.249073 ACTGCTACGCGATGTCATCC 60.249 55.000 15.93 0.00 0.00 3.51
4987 6146 5.296283 TCGTAGAATAGTTGAGTACCTGAGC 59.704 44.000 0.00 0.00 0.00 4.26
5125 6284 3.197265 GTTTTTGCTCACCATTGCACTT 58.803 40.909 0.00 0.00 39.05 3.16
5138 6297 6.650807 CACCATTGCACTTTAGAAGAGTTCTA 59.349 38.462 0.00 0.00 41.14 2.10
5396 6607 4.154015 TGCTGTTATTGACATGAAGGAACG 59.846 41.667 0.00 0.00 37.69 3.95
5437 6648 5.043432 TCCCAGTAAGGAAATGGATGGAATT 60.043 40.000 0.00 0.00 41.22 2.17
5494 7847 8.814038 AACAATAGTGAGAGCAAATTATTCCT 57.186 30.769 0.00 0.00 0.00 3.36
5496 7849 9.905713 ACAATAGTGAGAGCAAATTATTCCTTA 57.094 29.630 0.00 0.00 0.00 2.69
5533 7886 7.200434 TCAGAAGACTTAAGCTATCCCAAAT 57.800 36.000 1.29 0.00 0.00 2.32
5550 7903 6.012113 TCCCAAATATACTACGCCTAGCTAA 58.988 40.000 0.00 0.00 0.00 3.09
5551 7904 6.494491 TCCCAAATATACTACGCCTAGCTAAA 59.506 38.462 0.00 0.00 0.00 1.85
5552 7905 6.812160 CCCAAATATACTACGCCTAGCTAAAG 59.188 42.308 0.00 0.00 0.00 1.85
5553 7906 6.812160 CCAAATATACTACGCCTAGCTAAAGG 59.188 42.308 0.00 0.00 39.87 3.11
5565 7918 6.670077 CCTAGCTAAAGGCACTAAAGAAAG 57.330 41.667 0.00 0.00 44.79 2.62
5566 7919 5.065346 CCTAGCTAAAGGCACTAAAGAAAGC 59.935 44.000 0.00 0.00 44.79 3.51
5567 7920 3.437049 AGCTAAAGGCACTAAAGAAAGCG 59.563 43.478 0.00 0.00 44.79 4.68
5568 7921 2.706555 AAAGGCACTAAAGAAAGCGC 57.293 45.000 0.00 0.00 38.49 5.92
5569 7922 0.881796 AAGGCACTAAAGAAAGCGCC 59.118 50.000 2.29 0.00 43.66 6.53
5570 7923 2.556286 GGCACTAAAGAAAGCGCCT 58.444 52.632 2.29 0.00 40.78 5.52
5571 7924 0.169009 GGCACTAAAGAAAGCGCCTG 59.831 55.000 2.29 0.00 40.78 4.85
5572 7925 0.875059 GCACTAAAGAAAGCGCCTGT 59.125 50.000 2.29 0.00 0.00 4.00
5573 7926 1.400242 GCACTAAAGAAAGCGCCTGTG 60.400 52.381 2.29 0.20 0.00 3.66
5574 7927 1.197721 CACTAAAGAAAGCGCCTGTGG 59.802 52.381 2.29 0.00 0.00 4.17
5575 7928 0.804989 CTAAAGAAAGCGCCTGTGGG 59.195 55.000 2.29 0.00 0.00 4.61
5576 7929 0.398696 TAAAGAAAGCGCCTGTGGGA 59.601 50.000 2.29 0.00 33.58 4.37
5577 7930 0.890996 AAAGAAAGCGCCTGTGGGAG 60.891 55.000 2.29 0.00 35.44 4.30
5578 7931 2.747855 GAAAGCGCCTGTGGGAGG 60.748 66.667 2.29 0.00 46.13 4.30
5700 8053 7.789341 TTAGCACGTTAAGTTTGCAATTATG 57.211 32.000 0.00 0.00 38.81 1.90
5704 8057 6.074569 GCACGTTAAGTTTGCAATTATGTGTT 60.075 34.615 17.76 4.03 36.22 3.32
5705 8058 7.272951 CACGTTAAGTTTGCAATTATGTGTTG 58.727 34.615 0.00 0.00 0.00 3.33
5707 8060 7.489757 ACGTTAAGTTTGCAATTATGTGTTGTT 59.510 29.630 0.00 0.00 0.00 2.83
5708 8061 7.787026 CGTTAAGTTTGCAATTATGTGTTGTTG 59.213 33.333 0.00 0.00 0.00 3.33
5709 8062 5.655893 AGTTTGCAATTATGTGTTGTTGC 57.344 34.783 0.00 2.25 45.27 4.17
5749 8104 9.178427 GTTTCGCTAGTAACGTATGATTTAGAT 57.822 33.333 0.00 0.00 0.00 1.98
5782 8138 6.380274 TGATAAACCACAAAACCAAGGTTGTA 59.620 34.615 5.06 0.00 43.17 2.41
5789 8145 6.406400 CCACAAAACCAAGGTTGTAAGAATCA 60.406 38.462 5.06 0.00 38.47 2.57
5795 8151 7.781324 ACCAAGGTTGTAAGAATCATGATTT 57.219 32.000 21.57 9.86 0.00 2.17
5804 8160 8.504812 TGTAAGAATCATGATTTTGAATCGGA 57.495 30.769 21.57 0.00 32.03 4.55
5812 8168 4.774124 TGATTTTGAATCGGATCAGAGCT 58.226 39.130 1.20 0.00 0.00 4.09
5834 8190 3.465871 TCGATGATTGGATCGCAAATCA 58.534 40.909 15.36 15.36 44.04 2.57
5889 8245 9.737427 ACGTAGATTCTACTAGTCAAAATCATG 57.263 33.333 19.05 14.40 0.00 3.07
5890 8246 9.186323 CGTAGATTCTACTAGTCAAAATCATGG 57.814 37.037 19.05 9.22 0.00 3.66
5895 8251 8.648557 TTCTACTAGTCAAAATCATGGAATCG 57.351 34.615 0.00 0.00 0.00 3.34
5961 8317 3.576078 TCACAATCCTGACAACCTTGT 57.424 42.857 0.00 0.00 45.65 3.16
5964 8320 4.133820 CACAATCCTGACAACCTTGTACA 58.866 43.478 0.00 0.00 42.43 2.90
5966 8322 4.578928 ACAATCCTGACAACCTTGTACAAC 59.421 41.667 3.59 0.00 42.43 3.32
5995 8364 0.657312 TTTGTTCTCTGTGCGTGCTG 59.343 50.000 0.00 0.00 0.00 4.41
5996 8365 0.179086 TTGTTCTCTGTGCGTGCTGA 60.179 50.000 0.00 0.00 0.00 4.26
6004 8373 1.802960 CTGTGCGTGCTGATTTTCTCT 59.197 47.619 0.00 0.00 0.00 3.10
6034 8403 7.715265 TTTTTCTGTGTTAGAGCAACTCTAG 57.285 36.000 4.64 0.00 42.92 2.43
6035 8404 4.442375 TCTGTGTTAGAGCAACTCTAGC 57.558 45.455 10.50 10.50 42.92 3.42
6036 8405 3.826729 TCTGTGTTAGAGCAACTCTAGCA 59.173 43.478 14.73 14.73 46.55 3.49
6039 8408 4.442375 TGTTAGAGCAACTCTAGCAGAC 57.558 45.455 14.73 7.03 44.88 3.51
6040 8409 3.193691 TGTTAGAGCAACTCTAGCAGACC 59.806 47.826 14.73 0.00 44.88 3.85
6041 8410 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
6042 8411 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
6043 8412 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
6044 8413 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
6045 8414 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
6046 8415 0.978146 AACTCTAGCAGACCCCGCAT 60.978 55.000 0.00 0.00 0.00 4.73
6047 8416 1.365633 CTCTAGCAGACCCCGCATC 59.634 63.158 0.00 0.00 0.00 3.91
6048 8417 2.093537 CTCTAGCAGACCCCGCATCC 62.094 65.000 0.00 0.00 0.00 3.51
6049 8418 2.041922 TAGCAGACCCCGCATCCT 60.042 61.111 0.00 0.00 0.00 3.24
6050 8419 2.374830 CTAGCAGACCCCGCATCCTG 62.375 65.000 0.00 0.00 0.00 3.86
6052 8421 4.864334 CAGACCCCGCATCCTGCC 62.864 72.222 0.00 0.00 41.12 4.85
6080 8449 2.347150 CGGAAAATAACCGCCAAAATGC 59.653 45.455 0.00 0.00 43.74 3.56
6088 8457 4.128388 GCCAAAATGCGGGTCGGG 62.128 66.667 0.00 0.00 0.00 5.14
6089 8458 3.448340 CCAAAATGCGGGTCGGGG 61.448 66.667 0.00 0.00 0.00 5.73
6090 8459 4.128388 CAAAATGCGGGTCGGGGC 62.128 66.667 0.00 0.00 0.00 5.80
6098 8467 3.367743 GGGTCGGGGCGGAAAAAC 61.368 66.667 0.00 0.00 0.00 2.43
6099 8468 3.367743 GGTCGGGGCGGAAAAACC 61.368 66.667 0.00 0.00 0.00 3.27
6100 8469 2.281970 GTCGGGGCGGAAAAACCT 60.282 61.111 0.00 0.00 36.31 3.50
6101 8470 2.281900 TCGGGGCGGAAAAACCTG 60.282 61.111 0.00 0.00 36.31 4.00
6102 8471 4.050934 CGGGGCGGAAAAACCTGC 62.051 66.667 0.00 0.00 37.42 4.85
6105 8474 4.050934 GGCGGAAAAACCTGCCCG 62.051 66.667 2.44 0.00 45.51 6.13
6106 8475 2.981350 GCGGAAAAACCTGCCCGA 60.981 61.111 0.00 0.00 44.29 5.14
6107 8476 2.340328 GCGGAAAAACCTGCCCGAT 61.340 57.895 0.00 0.00 44.29 4.18
6108 8477 1.800681 CGGAAAAACCTGCCCGATC 59.199 57.895 0.00 0.00 44.29 3.69
6109 8478 0.958382 CGGAAAAACCTGCCCGATCA 60.958 55.000 0.00 0.00 44.29 2.92
6110 8479 0.811281 GGAAAAACCTGCCCGATCAG 59.189 55.000 0.00 0.00 35.41 2.90
6111 8480 1.613255 GGAAAAACCTGCCCGATCAGA 60.613 52.381 5.61 0.00 36.19 3.27
6112 8481 1.468914 GAAAAACCTGCCCGATCAGAC 59.531 52.381 5.61 0.00 36.19 3.51
6113 8482 0.322546 AAAACCTGCCCGATCAGACC 60.323 55.000 5.61 0.00 36.19 3.85
6114 8483 2.198304 AAACCTGCCCGATCAGACCC 62.198 60.000 5.61 0.00 36.19 4.46
6115 8484 3.866582 CCTGCCCGATCAGACCCC 61.867 72.222 5.61 0.00 36.19 4.95
6116 8485 4.227134 CTGCCCGATCAGACCCCG 62.227 72.222 0.00 0.00 36.19 5.73
6119 8488 3.550431 CCCGATCAGACCCCGCAT 61.550 66.667 0.00 0.00 0.00 4.73
6120 8489 2.029666 CCGATCAGACCCCGCATC 59.970 66.667 0.00 0.00 0.00 3.91
6121 8490 2.029666 CGATCAGACCCCGCATCC 59.970 66.667 0.00 0.00 0.00 3.51
6122 8491 2.427753 GATCAGACCCCGCATCCC 59.572 66.667 0.00 0.00 0.00 3.85
6123 8492 3.521529 GATCAGACCCCGCATCCCG 62.522 68.421 0.00 0.00 0.00 5.14
6154 8523 2.260126 AAAAATTTCGGGGGCGCG 59.740 55.556 0.00 0.00 0.00 6.86
6155 8524 3.289704 AAAAATTTCGGGGGCGCGG 62.290 57.895 8.83 2.54 0.00 6.46
6164 8533 4.193334 GGGGCGCGGCAAAATCTC 62.193 66.667 34.30 14.57 0.00 2.75
6165 8534 4.536687 GGGCGCGGCAAAATCTCG 62.537 66.667 34.30 0.00 0.00 4.04
6166 8535 4.536687 GGCGCGGCAAAATCTCGG 62.537 66.667 29.32 0.00 0.00 4.63
6168 8537 4.536687 CGCGGCAAAATCTCGGCC 62.537 66.667 0.00 0.00 44.27 6.13
6169 8538 4.193334 GCGGCAAAATCTCGGCCC 62.193 66.667 0.00 0.00 44.90 5.80
6170 8539 3.518068 CGGCAAAATCTCGGCCCC 61.518 66.667 0.00 0.00 44.90 5.80
6171 8540 2.362375 GGCAAAATCTCGGCCCCA 60.362 61.111 0.00 0.00 41.90 4.96
6172 8541 1.981853 GGCAAAATCTCGGCCCCAA 60.982 57.895 0.00 0.00 41.90 4.12
6173 8542 1.215382 GCAAAATCTCGGCCCCAAC 59.785 57.895 0.00 0.00 0.00 3.77
6174 8543 1.890174 CAAAATCTCGGCCCCAACC 59.110 57.895 0.00 0.00 0.00 3.77
6175 8544 1.304962 AAAATCTCGGCCCCAACCC 60.305 57.895 0.00 0.00 0.00 4.11
6176 8545 3.638592 AAATCTCGGCCCCAACCCG 62.639 63.158 0.00 0.00 46.88 5.28
6182 8551 4.493049 GGCCCCAACCCGCGAATA 62.493 66.667 8.23 0.00 0.00 1.75
6183 8552 3.206957 GCCCCAACCCGCGAATAC 61.207 66.667 8.23 0.00 0.00 1.89
6184 8553 2.893404 CCCCAACCCGCGAATACG 60.893 66.667 8.23 0.00 42.93 3.06
6194 8563 3.402185 CGAATACGCGGGTTTCCC 58.598 61.111 11.50 0.00 41.09 3.97
6205 8574 2.358984 GTTTCCCCGTTGCGGCTA 60.359 61.111 0.00 0.00 46.86 3.93
6206 8575 2.358984 TTTCCCCGTTGCGGCTAC 60.359 61.111 4.43 4.43 46.86 3.58
6207 8576 4.745751 TTCCCCGTTGCGGCTACG 62.746 66.667 25.89 25.89 46.86 3.51
6219 8588 2.125147 GCTACGTGCCCTGCATCA 60.125 61.111 0.00 0.00 41.91 3.07
6220 8589 2.464459 GCTACGTGCCCTGCATCAC 61.464 63.158 0.00 0.00 41.91 3.06
6221 8590 1.079197 CTACGTGCCCTGCATCACA 60.079 57.895 0.00 0.00 41.91 3.58
6222 8591 1.079197 TACGTGCCCTGCATCACAG 60.079 57.895 0.00 8.46 46.77 3.66
6234 8603 3.930336 TGCATCACAGAGAAGTAGTTGG 58.070 45.455 0.00 0.00 0.00 3.77
6235 8604 2.675348 GCATCACAGAGAAGTAGTTGGC 59.325 50.000 0.00 0.00 0.00 4.52
6236 8605 2.724977 TCACAGAGAAGTAGTTGGCG 57.275 50.000 0.00 0.00 0.00 5.69
6237 8606 1.272490 TCACAGAGAAGTAGTTGGCGG 59.728 52.381 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.414003 TGTTATTTTATAATAAATGTGGCCGCA 58.586 29.630 23.66 23.66 37.82 5.69
1 2 8.804688 TGTTATTTTATAATAAATGTGGCCGC 57.195 30.769 10.11 10.11 37.82 6.53
15 16 9.802039 ACCTTGTTGAACCTCTGTTATTTTATA 57.198 29.630 0.00 0.00 33.97 0.98
16 17 8.706322 ACCTTGTTGAACCTCTGTTATTTTAT 57.294 30.769 0.00 0.00 33.97 1.40
17 18 7.996644 AGACCTTGTTGAACCTCTGTTATTTTA 59.003 33.333 0.00 0.00 33.97 1.52
18 19 6.833933 AGACCTTGTTGAACCTCTGTTATTTT 59.166 34.615 0.00 0.00 33.97 1.82
19 20 6.365520 AGACCTTGTTGAACCTCTGTTATTT 58.634 36.000 0.00 0.00 33.97 1.40
20 21 5.941788 AGACCTTGTTGAACCTCTGTTATT 58.058 37.500 0.00 0.00 33.97 1.40
21 22 5.071788 TGAGACCTTGTTGAACCTCTGTTAT 59.928 40.000 0.00 0.00 33.97 1.89
22 23 4.407621 TGAGACCTTGTTGAACCTCTGTTA 59.592 41.667 0.00 0.00 33.97 2.41
23 24 3.199946 TGAGACCTTGTTGAACCTCTGTT 59.800 43.478 0.00 0.00 37.42 3.16
24 25 2.771943 TGAGACCTTGTTGAACCTCTGT 59.228 45.455 0.00 0.00 0.00 3.41
25 26 3.475566 TGAGACCTTGTTGAACCTCTG 57.524 47.619 0.00 0.00 0.00 3.35
26 27 4.503714 TTTGAGACCTTGTTGAACCTCT 57.496 40.909 0.00 0.00 0.00 3.69
27 28 5.532779 AGATTTTGAGACCTTGTTGAACCTC 59.467 40.000 0.00 0.00 0.00 3.85
28 29 5.300286 CAGATTTTGAGACCTTGTTGAACCT 59.700 40.000 0.00 0.00 0.00 3.50
29 30 5.523369 CAGATTTTGAGACCTTGTTGAACC 58.477 41.667 0.00 0.00 0.00 3.62
30 31 4.978580 GCAGATTTTGAGACCTTGTTGAAC 59.021 41.667 0.00 0.00 0.00 3.18
31 32 4.644234 TGCAGATTTTGAGACCTTGTTGAA 59.356 37.500 0.00 0.00 0.00 2.69
32 33 4.206375 TGCAGATTTTGAGACCTTGTTGA 58.794 39.130 0.00 0.00 0.00 3.18
33 34 4.572985 TGCAGATTTTGAGACCTTGTTG 57.427 40.909 0.00 0.00 0.00 3.33
34 35 5.105392 TGTTTGCAGATTTTGAGACCTTGTT 60.105 36.000 0.00 0.00 0.00 2.83
35 36 4.402155 TGTTTGCAGATTTTGAGACCTTGT 59.598 37.500 0.00 0.00 0.00 3.16
36 37 4.935702 TGTTTGCAGATTTTGAGACCTTG 58.064 39.130 0.00 0.00 0.00 3.61
37 38 5.596836 TTGTTTGCAGATTTTGAGACCTT 57.403 34.783 0.00 0.00 0.00 3.50
38 39 5.596836 TTTGTTTGCAGATTTTGAGACCT 57.403 34.783 0.00 0.00 0.00 3.85
39 40 5.277011 GCTTTTGTTTGCAGATTTTGAGACC 60.277 40.000 0.00 0.00 0.00 3.85
40 41 5.291614 TGCTTTTGTTTGCAGATTTTGAGAC 59.708 36.000 0.00 0.00 34.84 3.36
41 42 5.417811 TGCTTTTGTTTGCAGATTTTGAGA 58.582 33.333 0.00 0.00 34.84 3.27
42 43 5.721876 TGCTTTTGTTTGCAGATTTTGAG 57.278 34.783 0.00 0.00 34.84 3.02
43 44 6.403418 CCTTTGCTTTTGTTTGCAGATTTTGA 60.403 34.615 0.00 0.00 40.46 2.69
44 45 5.740099 CCTTTGCTTTTGTTTGCAGATTTTG 59.260 36.000 0.00 0.00 40.46 2.44
45 46 5.676837 GCCTTTGCTTTTGTTTGCAGATTTT 60.677 36.000 0.00 0.00 40.46 1.82
46 47 4.201940 GCCTTTGCTTTTGTTTGCAGATTT 60.202 37.500 0.00 0.00 40.46 2.17
47 48 3.313249 GCCTTTGCTTTTGTTTGCAGATT 59.687 39.130 0.00 0.00 40.46 2.40
48 49 2.874086 GCCTTTGCTTTTGTTTGCAGAT 59.126 40.909 0.00 0.00 40.46 2.90
49 50 2.278854 GCCTTTGCTTTTGTTTGCAGA 58.721 42.857 0.00 0.00 40.46 4.26
50 51 2.742954 GCCTTTGCTTTTGTTTGCAG 57.257 45.000 0.00 0.00 40.46 4.41
61 62 5.734550 CTCTGTGTGAGCTAGCCTTTGCT 62.735 52.174 12.13 0.00 42.81 3.91
62 63 0.801251 CTGTGTGAGCTAGCCTTTGC 59.199 55.000 12.13 0.00 37.95 3.68
63 64 2.344950 CTCTGTGTGAGCTAGCCTTTG 58.655 52.381 12.13 0.00 35.84 2.77
64 65 2.758736 CTCTGTGTGAGCTAGCCTTT 57.241 50.000 12.13 0.00 35.84 3.11
73 74 1.155042 GCTTTGAGGCTCTGTGTGAG 58.845 55.000 16.72 5.68 45.33 3.51
74 75 0.250467 GGCTTTGAGGCTCTGTGTGA 60.250 55.000 16.72 0.00 37.85 3.58
75 76 0.535780 TGGCTTTGAGGCTCTGTGTG 60.536 55.000 16.72 2.97 41.96 3.82
76 77 0.183492 TTGGCTTTGAGGCTCTGTGT 59.817 50.000 16.72 0.00 41.96 3.72
77 78 1.321474 TTTGGCTTTGAGGCTCTGTG 58.679 50.000 16.72 6.46 41.96 3.66
78 79 1.683385 GTTTTGGCTTTGAGGCTCTGT 59.317 47.619 16.72 0.00 41.96 3.41
79 80 1.682854 TGTTTTGGCTTTGAGGCTCTG 59.317 47.619 16.72 7.18 41.96 3.35
80 81 2.071778 TGTTTTGGCTTTGAGGCTCT 57.928 45.000 16.72 0.00 41.96 4.09
81 82 2.888834 TTGTTTTGGCTTTGAGGCTC 57.111 45.000 7.79 7.79 41.96 4.70
82 83 3.625649 TTTTGTTTTGGCTTTGAGGCT 57.374 38.095 3.15 0.00 41.96 4.58
83 84 3.487376 GCTTTTTGTTTTGGCTTTGAGGC 60.487 43.478 0.00 0.00 41.77 4.70
84 85 3.065233 GGCTTTTTGTTTTGGCTTTGAGG 59.935 43.478 0.00 0.00 0.00 3.86
85 86 3.065233 GGGCTTTTTGTTTTGGCTTTGAG 59.935 43.478 0.00 0.00 0.00 3.02
86 87 3.013219 GGGCTTTTTGTTTTGGCTTTGA 58.987 40.909 0.00 0.00 0.00 2.69
87 88 2.751806 TGGGCTTTTTGTTTTGGCTTTG 59.248 40.909 0.00 0.00 0.00 2.77
88 89 3.078891 TGGGCTTTTTGTTTTGGCTTT 57.921 38.095 0.00 0.00 0.00 3.51
89 90 2.752354 GTTGGGCTTTTTGTTTTGGCTT 59.248 40.909 0.00 0.00 0.00 4.35
90 91 2.290577 TGTTGGGCTTTTTGTTTTGGCT 60.291 40.909 0.00 0.00 0.00 4.75
91 92 2.087646 TGTTGGGCTTTTTGTTTTGGC 58.912 42.857 0.00 0.00 0.00 4.52
92 93 3.427368 GCTTGTTGGGCTTTTTGTTTTGG 60.427 43.478 0.00 0.00 0.00 3.28
93 94 3.427368 GGCTTGTTGGGCTTTTTGTTTTG 60.427 43.478 0.00 0.00 0.00 2.44
94 95 2.752354 GGCTTGTTGGGCTTTTTGTTTT 59.248 40.909 0.00 0.00 0.00 2.43
95 96 2.290577 TGGCTTGTTGGGCTTTTTGTTT 60.291 40.909 0.00 0.00 0.00 2.83
96 97 1.280421 TGGCTTGTTGGGCTTTTTGTT 59.720 42.857 0.00 0.00 0.00 2.83
97 98 0.908198 TGGCTTGTTGGGCTTTTTGT 59.092 45.000 0.00 0.00 0.00 2.83
98 99 1.298602 GTGGCTTGTTGGGCTTTTTG 58.701 50.000 0.00 0.00 0.00 2.44
99 100 0.908198 TGTGGCTTGTTGGGCTTTTT 59.092 45.000 0.00 0.00 0.00 1.94
100 101 0.908198 TTGTGGCTTGTTGGGCTTTT 59.092 45.000 0.00 0.00 0.00 2.27
101 102 0.177836 GTTGTGGCTTGTTGGGCTTT 59.822 50.000 0.00 0.00 0.00 3.51
102 103 1.685355 GGTTGTGGCTTGTTGGGCTT 61.685 55.000 0.00 0.00 0.00 4.35
103 104 2.133641 GGTTGTGGCTTGTTGGGCT 61.134 57.895 0.00 0.00 0.00 5.19
104 105 2.421314 GGTTGTGGCTTGTTGGGC 59.579 61.111 0.00 0.00 0.00 5.36
105 106 2.727544 CGGTTGTGGCTTGTTGGG 59.272 61.111 0.00 0.00 0.00 4.12
106 107 2.727544 CCGGTTGTGGCTTGTTGG 59.272 61.111 0.00 0.00 0.00 3.77
114 115 2.098426 ATTTTGCCTGCCGGTTGTGG 62.098 55.000 1.90 1.25 0.00 4.17
115 116 0.600557 TATTTTGCCTGCCGGTTGTG 59.399 50.000 1.90 0.00 0.00 3.33
116 117 1.333177 TTATTTTGCCTGCCGGTTGT 58.667 45.000 1.90 0.00 0.00 3.32
117 118 2.447244 TTTATTTTGCCTGCCGGTTG 57.553 45.000 1.90 0.00 0.00 3.77
118 119 2.630580 TCTTTTATTTTGCCTGCCGGTT 59.369 40.909 1.90 0.00 0.00 4.44
119 120 2.243810 TCTTTTATTTTGCCTGCCGGT 58.756 42.857 1.90 0.00 0.00 5.28
120 121 3.525268 ATCTTTTATTTTGCCTGCCGG 57.475 42.857 0.00 0.00 0.00 6.13
121 122 4.097892 ACCTATCTTTTATTTTGCCTGCCG 59.902 41.667 0.00 0.00 0.00 5.69
122 123 5.598416 ACCTATCTTTTATTTTGCCTGCC 57.402 39.130 0.00 0.00 0.00 4.85
123 124 8.251026 AGTTTACCTATCTTTTATTTTGCCTGC 58.749 33.333 0.00 0.00 0.00 4.85
149 150 9.929180 GCGATCATATAATAGGATAGGCAATTA 57.071 33.333 0.00 0.00 32.33 1.40
150 151 7.880195 GGCGATCATATAATAGGATAGGCAATT 59.120 37.037 11.68 0.00 43.10 2.32
151 152 7.390027 GGCGATCATATAATAGGATAGGCAAT 58.610 38.462 11.68 0.00 43.10 3.56
152 153 6.759272 GGCGATCATATAATAGGATAGGCAA 58.241 40.000 11.68 0.00 43.10 4.52
153 154 6.346477 GGCGATCATATAATAGGATAGGCA 57.654 41.667 11.68 0.00 43.10 4.75
154 155 6.346477 TGGCGATCATATAATAGGATAGGC 57.654 41.667 10.27 10.27 43.59 3.93
155 156 7.179160 TGGATGGCGATCATATAATAGGATAGG 59.821 40.741 11.07 0.00 35.97 2.57
156 157 8.127150 TGGATGGCGATCATATAATAGGATAG 57.873 38.462 11.07 0.00 35.97 2.08
157 158 8.491045 TTGGATGGCGATCATATAATAGGATA 57.509 34.615 11.07 0.00 35.97 2.59
158 159 7.379059 TTGGATGGCGATCATATAATAGGAT 57.621 36.000 11.07 0.00 35.97 3.24
159 160 6.806668 TTGGATGGCGATCATATAATAGGA 57.193 37.500 11.07 0.00 35.97 2.94
160 161 6.260936 GGTTTGGATGGCGATCATATAATAGG 59.739 42.308 11.07 0.00 35.97 2.57
161 162 6.018751 CGGTTTGGATGGCGATCATATAATAG 60.019 42.308 11.07 0.00 35.97 1.73
162 163 5.815222 CGGTTTGGATGGCGATCATATAATA 59.185 40.000 11.07 0.00 35.97 0.98
163 164 4.635765 CGGTTTGGATGGCGATCATATAAT 59.364 41.667 11.07 0.00 35.97 1.28
164 165 4.000325 CGGTTTGGATGGCGATCATATAA 59.000 43.478 11.07 0.00 35.97 0.98
165 166 3.595173 CGGTTTGGATGGCGATCATATA 58.405 45.455 11.07 0.00 35.97 0.86
166 167 2.426522 CGGTTTGGATGGCGATCATAT 58.573 47.619 11.07 0.00 35.97 1.78
167 168 1.542328 CCGGTTTGGATGGCGATCATA 60.542 52.381 11.07 0.00 42.00 2.15
168 169 0.819259 CCGGTTTGGATGGCGATCAT 60.819 55.000 11.07 0.00 42.00 2.45
169 170 1.451207 CCGGTTTGGATGGCGATCA 60.451 57.895 11.07 0.00 42.00 2.92
170 171 1.029947 AACCGGTTTGGATGGCGATC 61.030 55.000 15.86 0.00 42.00 3.69
171 172 1.001393 AACCGGTTTGGATGGCGAT 60.001 52.632 15.86 0.00 42.00 4.58
172 173 1.969064 CAACCGGTTTGGATGGCGA 60.969 57.895 19.55 0.00 42.00 5.54
173 174 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
174 175 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
175 176 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
176 177 4.275936 GGATATCTTCAACCGGTTTGGATG 59.724 45.833 19.55 14.79 41.73 3.51
177 178 4.461198 GGATATCTTCAACCGGTTTGGAT 58.539 43.478 19.55 21.16 42.00 3.41
178 179 3.371166 GGGATATCTTCAACCGGTTTGGA 60.371 47.826 19.55 15.86 42.00 3.53
179 180 2.949644 GGGATATCTTCAACCGGTTTGG 59.050 50.000 19.55 7.84 46.41 3.28
180 181 2.612212 CGGGATATCTTCAACCGGTTTG 59.388 50.000 19.55 13.53 40.79 2.93
181 182 2.914059 CGGGATATCTTCAACCGGTTT 58.086 47.619 19.55 5.23 40.79 3.27
182 183 1.474498 GCGGGATATCTTCAACCGGTT 60.474 52.381 15.86 15.86 44.39 4.44
183 184 0.106149 GCGGGATATCTTCAACCGGT 59.894 55.000 16.06 0.00 44.39 5.28
184 185 0.944311 CGCGGGATATCTTCAACCGG 60.944 60.000 16.06 0.00 44.39 5.28
185 186 1.557443 GCGCGGGATATCTTCAACCG 61.557 60.000 8.83 11.64 46.78 4.44
186 187 0.249911 AGCGCGGGATATCTTCAACC 60.250 55.000 8.83 0.00 0.00 3.77
187 188 2.059541 GTAGCGCGGGATATCTTCAAC 58.940 52.381 8.83 0.00 0.00 3.18
188 189 1.000506 GGTAGCGCGGGATATCTTCAA 59.999 52.381 8.83 0.00 0.00 2.69
189 190 0.601558 GGTAGCGCGGGATATCTTCA 59.398 55.000 8.83 0.00 0.00 3.02
190 191 0.601558 TGGTAGCGCGGGATATCTTC 59.398 55.000 8.83 0.00 0.00 2.87
191 192 1.204941 GATGGTAGCGCGGGATATCTT 59.795 52.381 8.83 2.79 0.00 2.40
192 193 0.818296 GATGGTAGCGCGGGATATCT 59.182 55.000 8.83 0.00 0.00 1.98
193 194 0.818296 AGATGGTAGCGCGGGATATC 59.182 55.000 8.83 1.32 0.00 1.63
194 195 0.818296 GAGATGGTAGCGCGGGATAT 59.182 55.000 8.83 0.00 0.00 1.63
195 196 1.248785 GGAGATGGTAGCGCGGGATA 61.249 60.000 8.83 0.00 0.00 2.59
196 197 2.574955 GGAGATGGTAGCGCGGGAT 61.575 63.158 8.83 0.00 0.00 3.85
197 198 3.224324 GGAGATGGTAGCGCGGGA 61.224 66.667 8.83 0.00 0.00 5.14
198 199 4.301027 GGGAGATGGTAGCGCGGG 62.301 72.222 8.83 0.00 0.00 6.13
199 200 3.536917 TGGGAGATGGTAGCGCGG 61.537 66.667 8.83 0.00 0.00 6.46
200 201 2.279517 GTGGGAGATGGTAGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
201 202 2.109181 GGTGGGAGATGGTAGCGC 59.891 66.667 0.00 0.00 0.00 5.92
202 203 2.417516 CGGTGGGAGATGGTAGCG 59.582 66.667 0.00 0.00 0.00 4.26
203 204 1.760875 TCCGGTGGGAGATGGTAGC 60.761 63.158 0.00 0.00 37.43 3.58
204 205 0.686441 TGTCCGGTGGGAGATGGTAG 60.686 60.000 0.00 0.00 44.97 3.18
205 206 0.686441 CTGTCCGGTGGGAGATGGTA 60.686 60.000 0.00 0.00 44.97 3.25
206 207 1.990060 CTGTCCGGTGGGAGATGGT 60.990 63.158 0.00 0.00 44.97 3.55
207 208 1.050988 ATCTGTCCGGTGGGAGATGG 61.051 60.000 0.00 0.00 44.97 3.51
208 209 0.390860 GATCTGTCCGGTGGGAGATG 59.609 60.000 0.00 0.00 44.97 2.90
209 210 0.760945 GGATCTGTCCGGTGGGAGAT 60.761 60.000 0.00 4.16 44.97 2.75
210 211 1.381327 GGATCTGTCCGGTGGGAGA 60.381 63.158 0.00 0.00 44.97 3.71
211 212 3.221222 GGATCTGTCCGGTGGGAG 58.779 66.667 0.00 0.00 44.97 4.30
219 220 6.235231 TCTATTTGGTTACTGGATCTGTCC 57.765 41.667 0.00 0.00 45.31 4.02
220 221 7.331791 ACTTCTATTTGGTTACTGGATCTGTC 58.668 38.462 0.00 0.00 0.00 3.51
221 222 7.259088 ACTTCTATTTGGTTACTGGATCTGT 57.741 36.000 0.00 0.00 0.00 3.41
222 223 8.567285 AAACTTCTATTTGGTTACTGGATCTG 57.433 34.615 0.00 0.00 0.00 2.90
360 362 1.006758 TCTTCCTCCTACATCCACCGT 59.993 52.381 0.00 0.00 0.00 4.83
389 391 5.532557 AGCATTCCAAAGTTTTAGAGTTGC 58.467 37.500 11.05 11.05 0.00 4.17
411 413 7.254286 CCCTTACAAAAACACCGAATTGAAAAG 60.254 37.037 0.00 0.00 0.00 2.27
455 462 1.221021 CGGAAAGGCCCTAGGACAC 59.779 63.158 11.48 0.00 29.21 3.67
499 509 0.679505 TCCCGGCTGCTATATGTGAC 59.320 55.000 0.00 0.00 0.00 3.67
546 557 6.567050 AGCTGCAACAAGTAATATTGATTGG 58.433 36.000 15.05 4.13 34.20 3.16
552 563 9.226606 TGTACTAAAGCTGCAACAAGTAATATT 57.773 29.630 1.02 0.00 0.00 1.28
563 574 6.202516 ACAAACTTTGTACTAAAGCTGCAA 57.797 33.333 5.30 0.00 43.27 4.08
564 575 5.828299 ACAAACTTTGTACTAAAGCTGCA 57.172 34.783 5.30 0.00 43.27 4.41
581 592 4.979815 ACTTGCCGCATTTTTAGTACAAAC 59.020 37.500 0.00 0.00 0.00 2.93
583 594 4.839668 ACTTGCCGCATTTTTAGTACAA 57.160 36.364 0.00 0.00 0.00 2.41
584 595 5.943706 TTACTTGCCGCATTTTTAGTACA 57.056 34.783 0.00 0.00 0.00 2.90
585 596 9.807386 CTATATTACTTGCCGCATTTTTAGTAC 57.193 33.333 0.00 0.00 0.00 2.73
587 598 8.671384 TCTATATTACTTGCCGCATTTTTAGT 57.329 30.769 0.00 0.00 0.00 2.24
588 599 9.760660 GATCTATATTACTTGCCGCATTTTTAG 57.239 33.333 0.00 0.00 0.00 1.85
589 600 9.278978 TGATCTATATTACTTGCCGCATTTTTA 57.721 29.630 0.00 0.00 0.00 1.52
591 602 7.661437 TCTGATCTATATTACTTGCCGCATTTT 59.339 33.333 0.00 0.00 0.00 1.82
592 603 7.161404 TCTGATCTATATTACTTGCCGCATTT 58.839 34.615 0.00 0.00 0.00 2.32
593 604 6.701340 TCTGATCTATATTACTTGCCGCATT 58.299 36.000 0.00 0.00 0.00 3.56
594 605 6.153510 TCTCTGATCTATATTACTTGCCGCAT 59.846 38.462 0.00 0.00 0.00 4.73
595 606 5.476945 TCTCTGATCTATATTACTTGCCGCA 59.523 40.000 0.00 0.00 0.00 5.69
596 607 5.955488 TCTCTGATCTATATTACTTGCCGC 58.045 41.667 0.00 0.00 0.00 6.53
597 608 7.120579 ACTCTCTCTGATCTATATTACTTGCCG 59.879 40.741 0.00 0.00 0.00 5.69
598 609 8.348285 ACTCTCTCTGATCTATATTACTTGCC 57.652 38.462 0.00 0.00 0.00 4.52
609 620 9.862371 GAAAACATTGTTACTCTCTCTGATCTA 57.138 33.333 1.76 0.00 0.00 1.98
610 621 7.543868 CGAAAACATTGTTACTCTCTCTGATCT 59.456 37.037 1.76 0.00 0.00 2.75
611 622 7.670916 CGAAAACATTGTTACTCTCTCTGATC 58.329 38.462 1.76 0.00 0.00 2.92
612 623 6.091441 GCGAAAACATTGTTACTCTCTCTGAT 59.909 38.462 1.76 0.00 0.00 2.90
613 624 5.405571 GCGAAAACATTGTTACTCTCTCTGA 59.594 40.000 1.76 0.00 0.00 3.27
614 625 5.389935 GGCGAAAACATTGTTACTCTCTCTG 60.390 44.000 1.76 0.00 0.00 3.35
615 626 4.691216 GGCGAAAACATTGTTACTCTCTCT 59.309 41.667 1.76 0.00 0.00 3.10
616 627 4.142881 GGGCGAAAACATTGTTACTCTCTC 60.143 45.833 1.76 0.00 0.00 3.20
617 628 3.751698 GGGCGAAAACATTGTTACTCTCT 59.248 43.478 1.76 0.00 0.00 3.10
618 629 3.751698 AGGGCGAAAACATTGTTACTCTC 59.248 43.478 1.76 0.00 0.00 3.20
619 630 3.751518 AGGGCGAAAACATTGTTACTCT 58.248 40.909 1.76 0.00 0.00 3.24
895 912 4.109766 TGCGTGACTGTGCACTTATATAC 58.890 43.478 19.41 8.64 35.90 1.47
1020 1037 1.138069 CCCGGCAAAAACCTTCAAGTT 59.862 47.619 0.00 0.00 0.00 2.66
1055 1073 3.314388 CTCTTGCAAACCTCGCCGC 62.314 63.158 0.00 0.00 0.00 6.53
1133 1163 4.849329 GCAATCCTGCTGCAGCGC 62.849 66.667 32.11 23.87 45.74 5.92
1185 1215 6.774354 TCGTGTGATAAACTCAAACTTACC 57.226 37.500 0.00 0.00 39.61 2.85
1284 1314 3.264706 TCAATACCCCAAACCTTGATCGA 59.735 43.478 0.00 0.00 0.00 3.59
1311 1342 2.224066 ACGAGAACCAGCCATACATAGC 60.224 50.000 0.00 0.00 0.00 2.97
1316 1348 4.850347 ATAGTACGAGAACCAGCCATAC 57.150 45.455 0.00 0.00 0.00 2.39
1407 1450 9.737427 ACACTACGAAAAGAGAATATATCACAG 57.263 33.333 0.00 0.00 0.00 3.66
1488 1533 2.632512 TGTGTAGTCTGTTCTCATGCCA 59.367 45.455 0.00 0.00 0.00 4.92
1663 1708 3.677527 CAGACTTTGGGCAGGCTG 58.322 61.111 10.94 10.94 43.70 4.85
1745 1836 6.187682 ACGGAGGGAAAACAGATTTGAATAT 58.812 36.000 0.00 0.00 0.00 1.28
1795 1886 9.787435 TTATTGGACTAGTAAATGTTCTGTTGT 57.213 29.630 11.72 0.00 0.00 3.32
1887 1983 3.680937 TGTATGTTTTCGAGCGTAAAGGG 59.319 43.478 0.00 0.00 0.00 3.95
1908 2004 4.600062 AGACCCTAATTAACCCAAAGCTG 58.400 43.478 0.00 0.00 0.00 4.24
1937 2035 5.510520 CCTGTCTTATCTCATCACTAAGGCC 60.511 48.000 0.00 0.00 0.00 5.19
2165 2264 4.000988 ACACTTGGGACTAAAATACTGCG 58.999 43.478 0.00 0.00 0.00 5.18
2167 2266 5.003804 AGCACACTTGGGACTAAAATACTG 58.996 41.667 0.00 0.00 0.00 2.74
2218 2317 6.484977 TCAATCTAATAAACCGCACATGCATA 59.515 34.615 0.00 0.00 42.21 3.14
2253 2352 0.525668 CGCGAACCACAGGTAGCTAG 60.526 60.000 0.00 0.00 37.34 3.42
2615 2718 4.027065 CGACGACTGCTTACACTACATAC 58.973 47.826 0.00 0.00 0.00 2.39
2624 2727 1.511958 GTATTCGCGACGACTGCTTAC 59.488 52.381 9.15 0.00 34.89 2.34
2625 2728 1.818850 GTATTCGCGACGACTGCTTA 58.181 50.000 9.15 0.00 34.89 3.09
2626 2729 1.132199 CGTATTCGCGACGACTGCTT 61.132 55.000 9.15 0.00 42.98 3.91
2627 2730 1.582937 CGTATTCGCGACGACTGCT 60.583 57.895 9.15 0.00 42.98 4.24
2628 2731 2.904016 CGTATTCGCGACGACTGC 59.096 61.111 9.15 0.00 42.98 4.40
2680 2783 7.905604 TGTACCATTCTTTGTACTCATTCTG 57.094 36.000 0.00 0.00 38.48 3.02
2967 3071 1.306482 CCCCTCCTCAAGCTCAGGA 60.306 63.158 12.72 12.72 37.75 3.86
3110 3215 2.912295 TCATCCCTGACTCCAAACATGA 59.088 45.455 0.00 0.00 0.00 3.07
3288 3397 9.840427 ATTATTTAACAGTCTCGGAACAAAATG 57.160 29.630 0.00 0.00 0.00 2.32
3385 3494 8.106462 TCCCTTTGATCCATATTAATTATCGCA 58.894 33.333 0.00 0.00 0.00 5.10
3386 3495 8.506168 TCCCTTTGATCCATATTAATTATCGC 57.494 34.615 0.00 0.00 0.00 4.58
3417 3545 7.274250 GCCTCATGTCACAGATGTTTTAAATTC 59.726 37.037 0.00 0.00 0.00 2.17
3438 3566 5.939764 ACTTAGTATGACTCATTGCCTCA 57.060 39.130 0.00 0.00 0.00 3.86
3464 3598 7.359595 TCTTGAATGAAAGTTTACGGATGTTG 58.640 34.615 0.00 0.00 0.00 3.33
3532 3666 6.710278 CCCAATTACAAATTTTCCCAGATGT 58.290 36.000 0.00 0.00 0.00 3.06
3538 3672 4.293662 TGGCCCAATTACAAATTTTCCC 57.706 40.909 0.00 0.00 0.00 3.97
3549 3683 0.395036 CCCGTCACATGGCCCAATTA 60.395 55.000 0.00 0.00 0.00 1.40
3552 3686 4.358841 CCCCGTCACATGGCCCAA 62.359 66.667 0.00 0.00 0.00 4.12
3560 3694 0.106918 AGTTTTGCTTCCCCGTCACA 60.107 50.000 0.00 0.00 0.00 3.58
3611 3746 5.202640 GCTTTAGTGGTGTGTTTAGTTTCG 58.797 41.667 0.00 0.00 0.00 3.46
3624 3759 3.068165 GCTTTCTTTGTGGCTTTAGTGGT 59.932 43.478 0.00 0.00 0.00 4.16
3628 3763 3.319122 AGTGGCTTTCTTTGTGGCTTTAG 59.681 43.478 0.00 0.00 0.00 1.85
3629 3764 3.295973 AGTGGCTTTCTTTGTGGCTTTA 58.704 40.909 0.00 0.00 0.00 1.85
3632 3767 1.322442 GAGTGGCTTTCTTTGTGGCT 58.678 50.000 0.00 0.00 0.00 4.75
3633 3768 0.315251 GGAGTGGCTTTCTTTGTGGC 59.685 55.000 0.00 0.00 0.00 5.01
3634 3769 1.986882 AGGAGTGGCTTTCTTTGTGG 58.013 50.000 0.00 0.00 0.00 4.17
3706 3841 7.426929 TCTTGCAGTTCAAACTTCTAATCTC 57.573 36.000 0.00 0.00 37.08 2.75
3742 3877 5.505985 CGAGTTTGGACTAGCTAGATGTACC 60.506 48.000 27.45 19.01 35.88 3.34
3749 3884 3.732471 GCAGTCGAGTTTGGACTAGCTAG 60.732 52.174 19.44 19.44 42.63 3.42
3762 3897 3.303135 TCCAAGGCGCAGTCGAGT 61.303 61.111 10.83 0.00 36.95 4.18
3771 3906 1.079888 GCCAAATTGGTCCAAGGCG 60.080 57.895 15.51 4.24 40.46 5.52
3781 3916 6.058827 TGTGACGATATATGTGCCAAATTG 57.941 37.500 0.00 0.00 0.00 2.32
3794 3929 5.005394 GCGTGTGTTAAGATTGTGACGATAT 59.995 40.000 0.00 0.00 0.00 1.63
3798 3933 2.219903 TGCGTGTGTTAAGATTGTGACG 59.780 45.455 0.00 0.00 0.00 4.35
3829 4119 0.531974 CAAAATCCTAGCCCGCGCTA 60.532 55.000 5.56 1.18 46.08 4.26
3860 4150 3.708403 TTGATCTAGCAGGCCATATGG 57.292 47.619 18.07 18.07 38.53 2.74
3903 4193 7.657336 TGGTTTTTCATCACCATTTCTCTTAC 58.343 34.615 0.00 0.00 38.20 2.34
3916 4206 9.859427 CATATAGCTCTTTTTGGTTTTTCATCA 57.141 29.630 0.00 0.00 0.00 3.07
3985 4286 2.757868 AGCTGTGATAGAAGTTCGCTCT 59.242 45.455 0.00 0.00 0.00 4.09
3986 4287 2.857152 CAGCTGTGATAGAAGTTCGCTC 59.143 50.000 5.25 0.00 0.00 5.03
4018 4319 5.923684 GGAAATGCTCGACCAAAATTTACAA 59.076 36.000 0.00 0.00 0.00 2.41
4131 4441 7.161404 TCTAACATGGACTGATATTGCATACC 58.839 38.462 0.00 0.00 0.00 2.73
4217 4527 0.674895 AGCTTTAAGGAGCACTGCCG 60.675 55.000 0.00 0.00 45.12 5.69
4231 4541 4.450976 TGCCGACATGTATCATTAGCTTT 58.549 39.130 0.00 0.00 0.00 3.51
4264 4574 6.157904 GTGTCACATAGATGATGGATCAGAG 58.842 44.000 0.00 0.00 40.64 3.35
4595 4905 0.891373 CCTTTCTCAGAGAGGCGTCA 59.109 55.000 9.41 0.00 27.31 4.35
4668 4981 2.709125 TTTATCGCCGCGGCATAGCT 62.709 55.000 45.26 27.18 42.06 3.32
4673 4986 2.125472 TCTTTTATCGCCGCGGCA 60.125 55.556 45.26 33.00 42.06 5.69
4987 6146 4.506288 TGTTAGGATAATCGAATGCACACG 59.494 41.667 7.86 7.86 0.00 4.49
5033 6192 0.258774 GCATGTCTAACCCCCACCAT 59.741 55.000 0.00 0.00 0.00 3.55
5125 6284 7.679875 GCATGACGTCATCTAGAACTCTTCTAA 60.680 40.741 27.79 0.00 36.82 2.10
5138 6297 0.543277 ATGGGTGCATGACGTCATCT 59.457 50.000 27.79 7.00 33.61 2.90
5396 6607 6.590234 ACTGGGAATTGAAACTTTATGTCC 57.410 37.500 0.00 0.00 0.00 4.02
5554 7907 1.197721 CCACAGGCGCTTTCTTTAGTG 59.802 52.381 7.64 2.58 0.00 2.74
5555 7908 1.523758 CCACAGGCGCTTTCTTTAGT 58.476 50.000 7.64 0.00 0.00 2.24
5556 7909 0.804989 CCCACAGGCGCTTTCTTTAG 59.195 55.000 7.64 0.00 0.00 1.85
5557 7910 0.398696 TCCCACAGGCGCTTTCTTTA 59.601 50.000 7.64 0.00 0.00 1.85
5558 7911 0.890996 CTCCCACAGGCGCTTTCTTT 60.891 55.000 7.64 0.00 0.00 2.52
5559 7912 1.302832 CTCCCACAGGCGCTTTCTT 60.303 57.895 7.64 0.00 0.00 2.52
5560 7913 2.348998 CTCCCACAGGCGCTTTCT 59.651 61.111 7.64 0.00 0.00 2.52
5561 7914 2.747855 CCTCCCACAGGCGCTTTC 60.748 66.667 7.64 0.00 34.56 2.62
5568 7921 2.734755 TATTGATTGCCTCCCACAGG 57.265 50.000 0.00 0.00 46.82 4.00
5569 7922 6.071728 GGATAAATATTGATTGCCTCCCACAG 60.072 42.308 0.00 0.00 0.00 3.66
5570 7923 5.774690 GGATAAATATTGATTGCCTCCCACA 59.225 40.000 0.00 0.00 0.00 4.17
5571 7924 5.185828 GGGATAAATATTGATTGCCTCCCAC 59.814 44.000 4.15 0.00 37.57 4.61
5572 7925 5.076318 AGGGATAAATATTGATTGCCTCCCA 59.924 40.000 10.07 0.00 38.82 4.37
5573 7926 5.583932 AGGGATAAATATTGATTGCCTCCC 58.416 41.667 1.31 1.31 37.74 4.30
5574 7927 7.544804 AAAGGGATAAATATTGATTGCCTCC 57.455 36.000 6.20 0.00 0.00 4.30
5614 7967 8.647143 AAAATATTGCTACATAACATGGCAAC 57.353 30.769 5.59 0.00 43.92 4.17
5671 8024 4.517453 TGCAAACTTAACGTGCTAAAGGAT 59.483 37.500 0.00 0.00 39.09 3.24
5682 8035 7.388290 ACAACACATAATTGCAAACTTAACG 57.612 32.000 1.71 0.00 0.00 3.18
5700 8053 5.685511 ACTTTATGTTTCATCGCAACAACAC 59.314 36.000 0.00 0.00 37.67 3.32
5752 8108 7.147567 ACCTTGGTTTTGTGGTTTATCATCTTT 60.148 33.333 0.00 0.00 0.00 2.52
5761 8117 5.246429 TCTTACAACCTTGGTTTTGTGGTTT 59.754 36.000 1.76 0.00 40.39 3.27
5768 8124 7.595819 TCATGATTCTTACAACCTTGGTTTT 57.404 32.000 1.76 0.00 0.00 2.43
5773 8129 9.695526 TTCAAAATCATGATTCTTACAACCTTG 57.304 29.630 20.95 16.64 0.00 3.61
5782 8138 8.229253 TGATCCGATTCAAAATCATGATTCTT 57.771 30.769 20.95 13.90 30.96 2.52
5789 8145 5.374921 AGCTCTGATCCGATTCAAAATCAT 58.625 37.500 0.00 0.00 0.00 2.45
5795 8151 2.427095 TCGAAGCTCTGATCCGATTCAA 59.573 45.455 0.00 0.00 0.00 2.69
5804 8160 4.567971 GATCCAATCATCGAAGCTCTGAT 58.432 43.478 0.00 0.00 0.00 2.90
5873 8229 7.119709 TCCGATTCCATGATTTTGACTAGTA 57.880 36.000 0.00 0.00 0.00 1.82
5878 8234 4.201950 CCACTCCGATTCCATGATTTTGAC 60.202 45.833 0.00 0.00 0.00 3.18
5887 8243 1.794714 ACTAGCCACTCCGATTCCAT 58.205 50.000 0.00 0.00 0.00 3.41
5889 8245 2.093658 TCAAACTAGCCACTCCGATTCC 60.094 50.000 0.00 0.00 0.00 3.01
5890 8246 3.247006 TCAAACTAGCCACTCCGATTC 57.753 47.619 0.00 0.00 0.00 2.52
5895 8251 2.973945 ACGATTCAAACTAGCCACTCC 58.026 47.619 0.00 0.00 0.00 3.85
5937 8293 4.647564 AGGTTGTCAGGATTGTGATTCT 57.352 40.909 0.00 0.00 0.00 2.40
5948 8304 3.064820 GTGTGTTGTACAAGGTTGTCAGG 59.935 47.826 8.98 0.00 41.89 3.86
5949 8305 3.687212 TGTGTGTTGTACAAGGTTGTCAG 59.313 43.478 8.98 0.00 41.89 3.51
5951 8307 4.095782 ACATGTGTGTTGTACAAGGTTGTC 59.904 41.667 8.98 0.00 41.89 3.18
5961 8317 7.497579 ACAGAGAACAAATACATGTGTGTTGTA 59.502 33.333 21.82 0.00 39.77 2.41
5964 8320 6.728200 CACAGAGAACAAATACATGTGTGTT 58.272 36.000 18.68 18.68 39.77 3.32
5966 8322 5.149273 GCACAGAGAACAAATACATGTGTG 58.851 41.667 9.11 6.54 38.95 3.82
6014 8383 3.826729 TGCTAGAGTTGCTCTAACACAGA 59.173 43.478 7.22 0.00 41.74 3.41
6018 8387 3.193691 GGTCTGCTAGAGTTGCTCTAACA 59.806 47.826 7.22 7.86 41.74 2.41
6026 8395 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
6027 8396 0.978146 ATGCGGGGTCTGCTAGAGTT 60.978 55.000 0.00 0.00 0.00 3.01
6028 8397 1.381872 ATGCGGGGTCTGCTAGAGT 60.382 57.895 0.00 0.00 0.00 3.24
6029 8398 1.365633 GATGCGGGGTCTGCTAGAG 59.634 63.158 0.00 0.00 0.00 2.43
6030 8399 2.134287 GGATGCGGGGTCTGCTAGA 61.134 63.158 0.00 0.00 0.00 2.43
6031 8400 2.136878 AGGATGCGGGGTCTGCTAG 61.137 63.158 0.30 0.00 0.00 3.42
6032 8401 2.041922 AGGATGCGGGGTCTGCTA 60.042 61.111 0.30 0.00 0.00 3.49
6033 8402 3.790437 CAGGATGCGGGGTCTGCT 61.790 66.667 0.30 0.00 0.00 4.24
6054 8423 1.708193 GGCGGTTATTTTCCGGGTCG 61.708 60.000 0.00 0.00 46.90 4.79
6055 8424 0.677414 TGGCGGTTATTTTCCGGGTC 60.677 55.000 0.00 0.00 46.90 4.46
6056 8425 0.251253 TTGGCGGTTATTTTCCGGGT 60.251 50.000 0.00 0.00 46.90 5.28
6057 8426 0.889306 TTTGGCGGTTATTTTCCGGG 59.111 50.000 0.00 0.00 46.90 5.73
6058 8427 2.726832 TTTTGGCGGTTATTTTCCGG 57.273 45.000 0.00 0.00 46.90 5.14
6071 8440 4.128388 CCCGACCCGCATTTTGGC 62.128 66.667 0.00 0.00 0.00 4.52
6072 8441 3.448340 CCCCGACCCGCATTTTGG 61.448 66.667 0.00 0.00 0.00 3.28
6073 8442 4.128388 GCCCCGACCCGCATTTTG 62.128 66.667 0.00 0.00 0.00 2.44
6081 8450 3.367743 GTTTTTCCGCCCCGACCC 61.368 66.667 0.00 0.00 0.00 4.46
6082 8451 3.367743 GGTTTTTCCGCCCCGACC 61.368 66.667 0.00 0.00 0.00 4.79
6083 8452 2.281970 AGGTTTTTCCGCCCCGAC 60.282 61.111 0.00 0.00 41.99 4.79
6084 8453 2.281900 CAGGTTTTTCCGCCCCGA 60.282 61.111 0.00 0.00 41.99 5.14
6085 8454 4.050934 GCAGGTTTTTCCGCCCCG 62.051 66.667 0.00 0.00 41.99 5.73
6086 8455 3.691342 GGCAGGTTTTTCCGCCCC 61.691 66.667 7.95 0.00 44.24 5.80
6088 8457 4.050934 CGGGCAGGTTTTTCCGCC 62.051 66.667 9.83 9.83 46.93 6.13
6089 8458 2.266376 GATCGGGCAGGTTTTTCCGC 62.266 60.000 0.00 0.00 41.98 5.54
6090 8459 0.958382 TGATCGGGCAGGTTTTTCCG 60.958 55.000 0.00 0.00 43.42 4.30
6091 8460 0.811281 CTGATCGGGCAGGTTTTTCC 59.189 55.000 0.00 0.00 32.26 3.13
6092 8461 1.468914 GTCTGATCGGGCAGGTTTTTC 59.531 52.381 0.00 0.00 36.55 2.29
6093 8462 1.534729 GTCTGATCGGGCAGGTTTTT 58.465 50.000 0.00 0.00 36.55 1.94
6094 8463 0.322546 GGTCTGATCGGGCAGGTTTT 60.323 55.000 8.71 0.00 36.55 2.43
6095 8464 1.299976 GGTCTGATCGGGCAGGTTT 59.700 57.895 8.71 0.00 36.55 3.27
6096 8465 2.670148 GGGTCTGATCGGGCAGGTT 61.670 63.158 8.71 0.00 36.55 3.50
6097 8466 3.083997 GGGTCTGATCGGGCAGGT 61.084 66.667 8.71 0.00 36.55 4.00
6098 8467 3.866582 GGGGTCTGATCGGGCAGG 61.867 72.222 8.71 0.00 36.55 4.85
6099 8468 4.227134 CGGGGTCTGATCGGGCAG 62.227 72.222 8.71 0.00 37.24 4.85
6102 8471 3.521529 GATGCGGGGTCTGATCGGG 62.522 68.421 0.62 0.00 0.00 5.14
6103 8472 2.029666 GATGCGGGGTCTGATCGG 59.970 66.667 0.00 0.00 0.00 4.18
6104 8473 2.029666 GGATGCGGGGTCTGATCG 59.970 66.667 0.00 0.00 0.00 3.69
6105 8474 2.427753 GGGATGCGGGGTCTGATC 59.572 66.667 0.00 0.00 0.00 2.92
6106 8475 3.550431 CGGGATGCGGGGTCTGAT 61.550 66.667 0.00 0.00 0.00 2.90
6137 8506 2.260126 CGCGCCCCCGAAATTTTT 59.740 55.556 0.00 0.00 36.29 1.94
6138 8507 3.754530 CCGCGCCCCCGAAATTTT 61.755 61.111 0.00 0.00 36.29 1.82
6147 8516 4.193334 GAGATTTTGCCGCGCCCC 62.193 66.667 0.00 0.00 0.00 5.80
6148 8517 4.536687 CGAGATTTTGCCGCGCCC 62.537 66.667 0.00 0.00 0.00 6.13
6149 8518 4.536687 CCGAGATTTTGCCGCGCC 62.537 66.667 0.00 0.00 0.00 6.53
6151 8520 4.536687 GGCCGAGATTTTGCCGCG 62.537 66.667 0.00 0.00 35.08 6.46
6152 8521 4.193334 GGGCCGAGATTTTGCCGC 62.193 66.667 0.00 0.00 46.31 6.53
6153 8522 3.518068 GGGGCCGAGATTTTGCCG 61.518 66.667 0.00 0.00 46.31 5.69
6154 8523 1.981853 TTGGGGCCGAGATTTTGCC 60.982 57.895 0.00 0.00 44.59 4.52
6155 8524 1.215382 GTTGGGGCCGAGATTTTGC 59.785 57.895 0.00 0.00 0.00 3.68
6156 8525 1.604147 GGGTTGGGGCCGAGATTTTG 61.604 60.000 0.00 0.00 0.00 2.44
6157 8526 1.304962 GGGTTGGGGCCGAGATTTT 60.305 57.895 0.00 0.00 0.00 1.82
6158 8527 2.359011 GGGTTGGGGCCGAGATTT 59.641 61.111 0.00 0.00 0.00 2.17
6159 8528 4.109675 CGGGTTGGGGCCGAGATT 62.110 66.667 0.00 0.00 0.00 2.40
6165 8534 4.493049 TATTCGCGGGTTGGGGCC 62.493 66.667 6.13 0.00 0.00 5.80
6166 8535 3.206957 GTATTCGCGGGTTGGGGC 61.207 66.667 6.13 0.00 0.00 5.80
6167 8536 2.893404 CGTATTCGCGGGTTGGGG 60.893 66.667 6.13 0.00 0.00 4.96
6202 8571 2.125147 TGATGCAGGGCACGTAGC 60.125 61.111 0.00 0.00 43.04 3.58
6203 8572 1.079197 TGTGATGCAGGGCACGTAG 60.079 57.895 11.10 0.00 43.04 3.51
6204 8573 1.079197 CTGTGATGCAGGGCACGTA 60.079 57.895 11.10 0.00 43.04 3.57
6205 8574 2.359107 CTGTGATGCAGGGCACGT 60.359 61.111 11.10 0.00 43.04 4.49
6206 8575 2.046988 TCTGTGATGCAGGGCACG 60.047 61.111 11.10 7.32 43.04 5.34
6207 8576 0.321919 TTCTCTGTGATGCAGGGCAC 60.322 55.000 9.46 9.46 45.27 5.01
6208 8577 0.035725 CTTCTCTGTGATGCAGGGCA 60.036 55.000 0.00 0.00 45.27 5.36
6209 8578 0.035630 ACTTCTCTGTGATGCAGGGC 60.036 55.000 0.00 0.00 45.27 5.19
6211 8580 3.883830 ACTACTTCTCTGTGATGCAGG 57.116 47.619 0.00 0.00 45.08 4.85
6212 8581 3.931468 CCAACTACTTCTCTGTGATGCAG 59.069 47.826 0.00 0.00 46.34 4.41
6213 8582 3.866066 GCCAACTACTTCTCTGTGATGCA 60.866 47.826 0.00 0.00 0.00 3.96
6214 8583 2.675348 GCCAACTACTTCTCTGTGATGC 59.325 50.000 0.00 0.00 0.00 3.91
6215 8584 2.926200 CGCCAACTACTTCTCTGTGATG 59.074 50.000 0.00 0.00 0.00 3.07
6216 8585 2.093973 CCGCCAACTACTTCTCTGTGAT 60.094 50.000 0.00 0.00 0.00 3.06
6217 8586 1.272490 CCGCCAACTACTTCTCTGTGA 59.728 52.381 0.00 0.00 0.00 3.58
6218 8587 1.714794 CCGCCAACTACTTCTCTGTG 58.285 55.000 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.