Multiple sequence alignment - TraesCS3B01G374900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G374900 chr3B 100.000 3935 0 0 1 3935 588469962 588473896 0.000000e+00 7267.0
1 TraesCS3B01G374900 chr3B 91.136 1805 120 15 1552 3334 588420660 588422446 0.000000e+00 2410.0
2 TraesCS3B01G374900 chr3B 97.645 552 12 1 981 1532 588420122 588420672 0.000000e+00 946.0
3 TraesCS3B01G374900 chr3B 96.629 356 11 1 3 357 588412086 588412441 1.220000e-164 590.0
4 TraesCS3B01G374900 chr3B 91.333 150 10 3 3438 3587 595367281 595367135 6.670000e-48 202.0
5 TraesCS3B01G374900 chr3B 98.485 66 1 0 160 225 588470048 588470113 2.480000e-22 117.0
6 TraesCS3B01G374900 chr3B 98.485 66 1 0 87 152 588470121 588470186 2.480000e-22 117.0
7 TraesCS3B01G374900 chr3B 96.970 66 2 0 87 152 588412243 588412308 1.160000e-20 111.0
8 TraesCS3B01G374900 chr3D 96.204 2608 92 2 847 3453 448427770 448430371 0.000000e+00 4261.0
9 TraesCS3B01G374900 chr3D 93.056 360 22 3 3578 3935 448430369 448430727 1.250000e-144 523.0
10 TraesCS3B01G374900 chr3D 96.861 223 5 1 3 225 448424516 448424736 4.800000e-99 372.0
11 TraesCS3B01G374900 chr3D 96.552 145 5 0 213 357 448427082 448427226 1.410000e-59 241.0
12 TraesCS3B01G374900 chr3D 97.122 139 3 1 87 225 448424671 448424808 2.360000e-57 233.0
13 TraesCS3B01G374900 chr3D 97.101 138 3 1 87 224 448424743 448424879 8.500000e-57 231.0
14 TraesCS3B01G374900 chr3D 96.970 66 2 0 160 225 448424600 448424665 1.160000e-20 111.0
15 TraesCS3B01G374900 chr3A 96.633 2346 75 3 783 3124 589792198 589794543 0.000000e+00 3892.0
16 TraesCS3B01G374900 chr3A 90.985 843 70 1 866 1708 589606164 589607000 0.000000e+00 1131.0
17 TraesCS3B01G374900 chr3A 91.325 634 54 1 1703 2336 589613372 589614004 0.000000e+00 865.0
18 TraesCS3B01G374900 chr3A 96.901 355 9 2 3 357 589790827 589791179 9.410000e-166 593.0
19 TraesCS3B01G374900 chr3A 89.535 344 27 7 3577 3917 589794824 589795161 1.010000e-115 427.0
20 TraesCS3B01G374900 chr3A 84.798 421 39 14 351 751 589791586 589792001 2.200000e-107 399.0
21 TraesCS3B01G374900 chr3A 91.608 286 11 4 3169 3453 589794552 589794825 2.220000e-102 383.0
22 TraesCS3B01G374900 chr3A 94.898 196 9 1 162 357 589601373 589601567 4.940000e-79 305.0
23 TraesCS3B01G374900 chr3A 97.973 148 3 0 4 151 589601288 589601435 1.400000e-64 257.0
24 TraesCS3B01G374900 chr3A 96.970 66 2 0 160 225 589790911 589790976 1.160000e-20 111.0
25 TraesCS3B01G374900 chr3A 96.970 66 2 0 87 152 589790983 589791048 1.160000e-20 111.0
26 TraesCS3B01G374900 chr3A 100.000 32 0 0 752 783 589792089 589792120 4.250000e-05 60.2
27 TraesCS3B01G374900 chr2B 81.460 1877 317 15 1075 2941 695889208 695891063 0.000000e+00 1509.0
28 TraesCS3B01G374900 chr2A 80.907 1896 310 33 1069 2941 716499572 716501438 0.000000e+00 1448.0
29 TraesCS3B01G374900 chr2D 80.488 1886 323 24 1069 2941 578963134 578964987 0.000000e+00 1402.0
30 TraesCS3B01G374900 chr2D 94.776 134 7 0 3447 3580 231598982 231599115 3.980000e-50 209.0
31 TraesCS3B01G374900 chr2D 90.323 155 13 2 3449 3602 315869267 315869114 6.670000e-48 202.0
32 TraesCS3B01G374900 chr1D 96.241 133 5 0 3449 3581 237439276 237439408 6.620000e-53 219.0
33 TraesCS3B01G374900 chr1D 94.326 141 6 2 3449 3588 162866770 162866909 8.560000e-52 215.0
34 TraesCS3B01G374900 chr1D 95.522 134 6 0 3449 3582 265352198 265352331 8.560000e-52 215.0
35 TraesCS3B01G374900 chr5B 95.522 134 6 0 3449 3582 12363006 12363139 8.560000e-52 215.0
36 TraesCS3B01G374900 chr6D 95.489 133 6 0 3449 3581 263622123 263622255 3.080000e-51 213.0
37 TraesCS3B01G374900 chr6D 95.489 133 6 0 3449 3581 299316177 299316045 3.080000e-51 213.0
38 TraesCS3B01G374900 chr7D 94.203 69 4 0 3 71 375921 375989 5.380000e-19 106.0
39 TraesCS3B01G374900 chr7A 91.667 72 3 1 3 71 531831 531902 3.240000e-16 97.1
40 TraesCS3B01G374900 chr4A 91.667 72 3 1 3 71 744307747 744307818 3.240000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G374900 chr3B 588469962 588473896 3934 False 2500.333333 7267 98.990000 1 3935 3 chr3B.!!$F3 3934
1 TraesCS3B01G374900 chr3B 588420122 588422446 2324 False 1678.000000 2410 94.390500 981 3334 2 chr3B.!!$F2 2353
2 TraesCS3B01G374900 chr3D 448424516 448430727 6211 False 853.142857 4261 96.266571 3 3935 7 chr3D.!!$F1 3932
3 TraesCS3B01G374900 chr3A 589606164 589607000 836 False 1131.000000 1131 90.985000 866 1708 1 chr3A.!!$F1 842
4 TraesCS3B01G374900 chr3A 589613372 589614004 632 False 865.000000 865 91.325000 1703 2336 1 chr3A.!!$F2 633
5 TraesCS3B01G374900 chr3A 589790827 589795161 4334 False 747.025000 3892 94.176875 3 3917 8 chr3A.!!$F4 3914
6 TraesCS3B01G374900 chr2B 695889208 695891063 1855 False 1509.000000 1509 81.460000 1075 2941 1 chr2B.!!$F1 1866
7 TraesCS3B01G374900 chr2A 716499572 716501438 1866 False 1448.000000 1448 80.907000 1069 2941 1 chr2A.!!$F1 1872
8 TraesCS3B01G374900 chr2D 578963134 578964987 1853 False 1402.000000 1402 80.488000 1069 2941 1 chr2D.!!$F2 1872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
521 3354 0.043940 AGGCTCTGGTTCTCCTCCAT 59.956 55.0 0.00 0.0 34.26 3.41 F
666 3500 0.109272 CGACATACGGTGTGCAGAGT 60.109 55.0 4.68 0.0 42.36 3.24 F
690 3524 0.321564 TGAAGCACGTCCAATCCAGG 60.322 55.0 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 5219 1.221840 CTCCAGTGTAGGCCGCAAT 59.778 57.895 0.0 0.0 0.0 3.56 R
2588 5602 1.401905 CGTAAATCCTCTTTGCCTGCC 59.598 52.381 0.0 0.0 0.0 4.85 R
2936 5968 3.820467 TCCTAACAGTCAGCACCAAATTG 59.180 43.478 0.0 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.918248 CAGGATCGGCCCCAATGA 59.082 61.111 0.00 0.00 37.37 2.57
251 2608 7.667557 ACAGCACATAAAACTCTCTGTACTAA 58.332 34.615 0.00 0.00 32.29 2.24
280 2637 4.022068 ACAAATAACAAGTGCCATGGTGAG 60.022 41.667 14.67 2.01 0.00 3.51
384 3166 2.966732 CGTGGCCTTGGCCTTCCTA 61.967 63.158 28.37 7.84 0.00 2.94
385 3167 1.382629 GTGGCCTTGGCCTTCCTAA 59.617 57.895 28.37 7.11 0.00 2.69
426 3217 1.201429 TGGCCTTCCTCTCCTTGTCC 61.201 60.000 3.32 0.00 0.00 4.02
452 3243 1.676967 CCTCCACAAGAGCCTTGGC 60.677 63.158 16.21 2.97 41.74 4.52
453 3244 1.073722 CTCCACAAGAGCCTTGGCA 59.926 57.895 14.54 0.00 35.31 4.92
485 3318 0.244994 TCAAGCTTCTCCGTCAGCTC 59.755 55.000 0.00 0.00 46.01 4.09
506 3339 1.279496 TGGAGCTGTAATGTCAGGCT 58.721 50.000 0.00 0.00 36.12 4.58
509 3342 2.548875 GAGCTGTAATGTCAGGCTCTG 58.451 52.381 0.00 0.00 36.57 3.35
510 3343 1.209019 AGCTGTAATGTCAGGCTCTGG 59.791 52.381 0.00 0.00 36.12 3.86
511 3344 1.065854 GCTGTAATGTCAGGCTCTGGT 60.066 52.381 2.86 0.00 36.12 4.00
512 3345 2.616510 GCTGTAATGTCAGGCTCTGGTT 60.617 50.000 2.86 0.28 36.12 3.67
513 3346 3.265791 CTGTAATGTCAGGCTCTGGTTC 58.734 50.000 2.86 0.00 31.51 3.62
514 3347 2.906389 TGTAATGTCAGGCTCTGGTTCT 59.094 45.455 2.86 0.00 31.51 3.01
515 3348 2.777832 AATGTCAGGCTCTGGTTCTC 57.222 50.000 2.86 0.00 31.51 2.87
516 3349 0.908198 ATGTCAGGCTCTGGTTCTCC 59.092 55.000 2.86 0.00 31.51 3.71
517 3350 0.178921 TGTCAGGCTCTGGTTCTCCT 60.179 55.000 2.86 0.00 31.51 3.69
518 3351 0.534873 GTCAGGCTCTGGTTCTCCTC 59.465 60.000 2.86 0.00 31.51 3.71
519 3352 0.616111 TCAGGCTCTGGTTCTCCTCC 60.616 60.000 2.86 0.00 31.51 4.30
520 3353 0.906756 CAGGCTCTGGTTCTCCTCCA 60.907 60.000 0.00 0.00 34.23 3.86
521 3354 0.043940 AGGCTCTGGTTCTCCTCCAT 59.956 55.000 0.00 0.00 34.26 3.41
522 3355 0.179936 GGCTCTGGTTCTCCTCCATG 59.820 60.000 0.00 0.00 34.26 3.66
528 3361 2.774234 CTGGTTCTCCTCCATGGTGTAT 59.226 50.000 12.58 0.00 37.07 2.29
536 3369 0.843309 TCCATGGTGTATCGGGCATT 59.157 50.000 12.58 0.00 0.00 3.56
540 3373 0.833949 TGGTGTATCGGGCATTAGCA 59.166 50.000 0.00 0.00 44.61 3.49
542 3375 1.602377 GGTGTATCGGGCATTAGCAAC 59.398 52.381 0.00 0.00 44.61 4.17
548 3381 1.427819 GGGCATTAGCAACGAACGG 59.572 57.895 0.00 0.00 44.61 4.44
560 3393 3.119096 GAACGGCGGCCACTCTTC 61.119 66.667 20.71 9.58 0.00 2.87
579 3412 2.233007 CTGCCGCTTCAACGAGCTTC 62.233 60.000 0.00 0.00 40.52 3.86
611 3444 9.474920 CTGAAACCAGAAACAAATTAAGCATAA 57.525 29.630 0.00 0.00 33.56 1.90
620 3453 8.587952 AAACAAATTAAGCATAAAGTGGACAC 57.412 30.769 0.00 0.00 0.00 3.67
629 3462 5.048713 AGCATAAAGTGGACACAAAGTAAGC 60.049 40.000 5.14 0.63 0.00 3.09
658 3492 1.471287 TGGAAGAGTCGACATACGGTG 59.529 52.381 19.50 0.00 42.82 4.94
666 3500 0.109272 CGACATACGGTGTGCAGAGT 60.109 55.000 4.68 0.00 42.36 3.24
690 3524 0.321564 TGAAGCACGTCCAATCCAGG 60.322 55.000 0.00 0.00 0.00 4.45
719 3553 2.686915 CCCTCATTGAGCTGTTCCATTC 59.313 50.000 8.23 0.00 0.00 2.67
805 3804 0.668535 AGGTTGGAAAAAGTGCGCTC 59.331 50.000 9.73 4.74 0.00 5.03
813 3812 3.746492 GGAAAAAGTGCGCTCTTCTAGAA 59.254 43.478 23.54 4.81 0.00 2.10
840 3840 4.455877 ACGAGAGCCAAAACATAAAGGAAG 59.544 41.667 0.00 0.00 0.00 3.46
862 3862 1.373812 GTGTTTAGGCGACCTGGGT 59.626 57.895 8.44 0.00 34.61 4.51
878 3878 2.676471 GTCTTGTTGGGCCGCCAT 60.676 61.111 12.58 0.00 0.00 4.40
1566 4580 4.172512 CAGCTCCATGCCCTCGCT 62.173 66.667 0.00 0.00 44.23 4.93
2205 5219 4.469586 TCAGCAATGGAGAGTACATACCAA 59.530 41.667 8.52 0.00 36.00 3.67
2588 5602 1.073216 GCTGACGACCACTCACATCG 61.073 60.000 0.00 0.00 41.60 3.84
2936 5968 2.808543 CCTGCAAAGACTACTGGTGAAC 59.191 50.000 0.00 0.00 0.00 3.18
3073 6106 1.077429 GTGGAGGGCTGGATCAACC 60.077 63.158 0.00 0.00 39.54 3.77
3095 6129 1.153958 GGCAAAATGGACTCGCTGC 60.154 57.895 0.00 0.00 0.00 5.25
3112 6146 2.028020 GCTGCTAGGTTGACCAGTACTT 60.028 50.000 2.56 0.00 38.89 2.24
3214 6268 3.891366 AGCCAGTAGAACAAACTGCAAAT 59.109 39.130 0.00 0.00 42.47 2.32
3339 6393 0.113580 AATTACCCGGCCCTGTTTGT 59.886 50.000 0.00 0.00 0.00 2.83
3365 6419 2.161855 TGGTGTGACAATGCCAGATTC 58.838 47.619 0.00 0.00 0.00 2.52
3368 6422 4.009675 GGTGTGACAATGCCAGATTCTTA 58.990 43.478 0.00 0.00 0.00 2.10
3394 6449 3.646162 AGATGTGGTTCAGAGTACACCAA 59.354 43.478 3.73 0.00 42.32 3.67
3453 6508 5.697633 TCAGGTCGGTTGTTTAGTCAAATAC 59.302 40.000 0.00 0.00 0.00 1.89
3454 6509 5.699458 CAGGTCGGTTGTTTAGTCAAATACT 59.301 40.000 0.00 0.00 42.62 2.12
3455 6510 5.930569 AGGTCGGTTGTTTAGTCAAATACTC 59.069 40.000 0.00 0.00 39.80 2.59
3456 6511 5.121298 GGTCGGTTGTTTAGTCAAATACTCC 59.879 44.000 0.00 0.00 39.80 3.85
3457 6512 5.121298 GTCGGTTGTTTAGTCAAATACTCCC 59.879 44.000 0.00 0.00 39.80 4.30
3459 6514 5.106830 CGGTTGTTTAGTCAAATACTCCCAC 60.107 44.000 0.00 0.00 39.80 4.61
3460 6515 5.182570 GGTTGTTTAGTCAAATACTCCCACC 59.817 44.000 0.00 0.00 39.80 4.61
3462 6517 4.040706 TGTTTAGTCAAATACTCCCACCGT 59.959 41.667 0.00 0.00 39.80 4.83
3463 6518 4.460948 TTAGTCAAATACTCCCACCGTC 57.539 45.455 0.00 0.00 39.80 4.79
3464 6519 2.537143 AGTCAAATACTCCCACCGTCT 58.463 47.619 0.00 0.00 30.33 4.18
3465 6520 2.496470 AGTCAAATACTCCCACCGTCTC 59.504 50.000 0.00 0.00 30.33 3.36
3466 6521 2.232941 GTCAAATACTCCCACCGTCTCA 59.767 50.000 0.00 0.00 0.00 3.27
3467 6522 2.901192 TCAAATACTCCCACCGTCTCAA 59.099 45.455 0.00 0.00 0.00 3.02
3468 6523 3.325425 TCAAATACTCCCACCGTCTCAAA 59.675 43.478 0.00 0.00 0.00 2.69
3469 6524 4.069304 CAAATACTCCCACCGTCTCAAAA 58.931 43.478 0.00 0.00 0.00 2.44
3470 6525 4.569719 AATACTCCCACCGTCTCAAAAT 57.430 40.909 0.00 0.00 0.00 1.82
3471 6526 2.951229 ACTCCCACCGTCTCAAAATT 57.049 45.000 0.00 0.00 0.00 1.82
3472 6527 2.779506 ACTCCCACCGTCTCAAAATTC 58.220 47.619 0.00 0.00 0.00 2.17
3473 6528 2.372172 ACTCCCACCGTCTCAAAATTCT 59.628 45.455 0.00 0.00 0.00 2.40
3474 6529 3.181443 ACTCCCACCGTCTCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
3475 6530 3.146066 TCCCACCGTCTCAAAATTCTTG 58.854 45.455 0.00 0.00 0.00 3.02
3476 6531 2.884639 CCCACCGTCTCAAAATTCTTGT 59.115 45.455 0.00 0.00 0.00 3.16
3477 6532 3.058224 CCCACCGTCTCAAAATTCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
3478 6533 3.815401 CCACCGTCTCAAAATTCTTGTCT 59.185 43.478 0.00 0.00 0.00 3.41
3479 6534 4.275936 CCACCGTCTCAAAATTCTTGTCTT 59.724 41.667 0.00 0.00 0.00 3.01
3480 6535 5.468746 CCACCGTCTCAAAATTCTTGTCTTA 59.531 40.000 0.00 0.00 0.00 2.10
3481 6536 6.363473 CACCGTCTCAAAATTCTTGTCTTAC 58.637 40.000 0.00 0.00 0.00 2.34
3482 6537 6.018262 CACCGTCTCAAAATTCTTGTCTTACA 60.018 38.462 0.00 0.00 0.00 2.41
3483 6538 6.710744 ACCGTCTCAAAATTCTTGTCTTACAT 59.289 34.615 0.00 0.00 0.00 2.29
3484 6539 7.228706 ACCGTCTCAAAATTCTTGTCTTACATT 59.771 33.333 0.00 0.00 0.00 2.71
3485 6540 8.076178 CCGTCTCAAAATTCTTGTCTTACATTT 58.924 33.333 0.00 0.00 0.00 2.32
3486 6541 8.895845 CGTCTCAAAATTCTTGTCTTACATTTG 58.104 33.333 0.00 0.00 29.24 2.32
3487 6542 9.736023 GTCTCAAAATTCTTGTCTTACATTTGT 57.264 29.630 0.00 0.00 29.85 2.83
3488 6543 9.950680 TCTCAAAATTCTTGTCTTACATTTGTC 57.049 29.630 0.00 0.00 29.85 3.18
3489 6544 9.956720 CTCAAAATTCTTGTCTTACATTTGTCT 57.043 29.630 0.00 0.00 29.85 3.41
3497 6552 9.146984 TCTTGTCTTACATTTGTCTAAATACGG 57.853 33.333 0.00 0.00 34.81 4.02
3498 6553 9.146984 CTTGTCTTACATTTGTCTAAATACGGA 57.853 33.333 0.00 0.00 34.81 4.69
3499 6554 9.661563 TTGTCTTACATTTGTCTAAATACGGAT 57.338 29.630 0.00 0.00 34.81 4.18
3500 6555 9.093970 TGTCTTACATTTGTCTAAATACGGATG 57.906 33.333 0.00 0.00 34.81 3.51
3501 6556 9.095065 GTCTTACATTTGTCTAAATACGGATGT 57.905 33.333 0.00 0.00 34.81 3.06
3506 6561 9.607988 ACATTTGTCTAAATACGGATGTATCAA 57.392 29.630 0.00 0.00 40.42 2.57
3508 6563 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
3509 6564 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
3510 6565 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
3511 6566 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
3512 6567 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
3513 6568 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
3514 6569 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
3515 6570 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
3516 6571 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
3517 6572 4.151689 ACGGATGTATCAAGTCACGTTTTG 59.848 41.667 0.00 0.00 0.00 2.44
3518 6573 4.435518 CGGATGTATCAAGTCACGTTTTGG 60.436 45.833 0.00 0.00 0.00 3.28
3519 6574 4.454504 GGATGTATCAAGTCACGTTTTGGT 59.545 41.667 0.00 0.00 0.00 3.67
3520 6575 5.640357 GGATGTATCAAGTCACGTTTTGGTA 59.360 40.000 0.00 0.00 0.00 3.25
3521 6576 6.315393 GGATGTATCAAGTCACGTTTTGGTAT 59.685 38.462 0.00 0.00 0.00 2.73
3522 6577 7.148306 GGATGTATCAAGTCACGTTTTGGTATT 60.148 37.037 0.00 0.00 0.00 1.89
3523 6578 8.780846 ATGTATCAAGTCACGTTTTGGTATTA 57.219 30.769 0.00 0.00 0.00 0.98
3524 6579 8.246908 TGTATCAAGTCACGTTTTGGTATTAG 57.753 34.615 0.00 0.00 0.00 1.73
3525 6580 8.089597 TGTATCAAGTCACGTTTTGGTATTAGA 58.910 33.333 0.00 0.00 0.00 2.10
3526 6581 9.095065 GTATCAAGTCACGTTTTGGTATTAGAT 57.905 33.333 0.00 0.00 0.00 1.98
3528 6583 8.470040 TCAAGTCACGTTTTGGTATTAGATAC 57.530 34.615 0.00 0.00 35.00 2.24
3529 6584 8.089597 TCAAGTCACGTTTTGGTATTAGATACA 58.910 33.333 0.00 0.00 37.48 2.29
3530 6585 8.879759 CAAGTCACGTTTTGGTATTAGATACAT 58.120 33.333 0.00 0.00 37.48 2.29
3531 6586 9.444600 AAGTCACGTTTTGGTATTAGATACATT 57.555 29.630 0.00 0.00 37.48 2.71
3532 6587 9.095065 AGTCACGTTTTGGTATTAGATACATTC 57.905 33.333 0.00 0.00 37.48 2.67
3533 6588 8.054236 GTCACGTTTTGGTATTAGATACATTCG 58.946 37.037 0.00 0.00 37.48 3.34
3534 6589 7.760794 TCACGTTTTGGTATTAGATACATTCGT 59.239 33.333 0.00 0.00 37.48 3.85
3535 6590 9.022915 CACGTTTTGGTATTAGATACATTCGTA 57.977 33.333 0.00 0.00 37.48 3.43
3536 6591 9.754382 ACGTTTTGGTATTAGATACATTCGTAT 57.246 29.630 1.06 0.00 41.16 3.06
3553 6608 9.517609 ACATTCGTATCTACACAAATCTAAGAC 57.482 33.333 0.00 0.00 0.00 3.01
3554 6609 9.516314 CATTCGTATCTACACAAATCTAAGACA 57.484 33.333 0.00 0.00 0.00 3.41
3556 6611 9.569167 TTCGTATCTACACAAATCTAAGACAAG 57.431 33.333 0.00 0.00 0.00 3.16
3557 6612 8.953313 TCGTATCTACACAAATCTAAGACAAGA 58.047 33.333 0.00 0.00 0.00 3.02
3558 6613 9.569167 CGTATCTACACAAATCTAAGACAAGAA 57.431 33.333 0.00 0.00 0.00 2.52
3565 6620 8.143835 ACACAAATCTAAGACAAGAATTTTGGG 58.856 33.333 0.00 0.00 36.01 4.12
3566 6621 8.359642 CACAAATCTAAGACAAGAATTTTGGGA 58.640 33.333 0.00 0.00 33.56 4.37
3567 6622 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3568 6623 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3569 6624 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3570 6625 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3571 6626 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3572 6627 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3573 6628 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3574 6629 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3575 6630 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3576 6631 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3577 6632 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3578 6633 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
3579 6634 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
3580 6635 2.852714 TTGGGACGGAGGGAGTATAA 57.147 50.000 0.00 0.00 0.00 0.98
3581 6636 2.852714 TGGGACGGAGGGAGTATAAA 57.147 50.000 0.00 0.00 0.00 1.40
3582 6637 2.674420 TGGGACGGAGGGAGTATAAAG 58.326 52.381 0.00 0.00 0.00 1.85
3583 6638 2.245546 TGGGACGGAGGGAGTATAAAGA 59.754 50.000 0.00 0.00 0.00 2.52
3584 6639 3.303049 GGGACGGAGGGAGTATAAAGAA 58.697 50.000 0.00 0.00 0.00 2.52
3585 6640 3.902467 GGGACGGAGGGAGTATAAAGAAT 59.098 47.826 0.00 0.00 0.00 2.40
3586 6641 4.262506 GGGACGGAGGGAGTATAAAGAATG 60.263 50.000 0.00 0.00 0.00 2.67
3636 6692 3.516700 CTGATGGAAGGGCAAAGGAAAAT 59.483 43.478 0.00 0.00 0.00 1.82
3637 6693 3.909364 TGATGGAAGGGCAAAGGAAAATT 59.091 39.130 0.00 0.00 0.00 1.82
3656 6712 0.955428 TTTGACCGTGATGCTGAGCC 60.955 55.000 0.23 0.00 0.00 4.70
3669 6725 1.586422 CTGAGCCGTATGTTCATGGG 58.414 55.000 0.00 0.00 33.39 4.00
3670 6726 0.908910 TGAGCCGTATGTTCATGGGT 59.091 50.000 0.00 0.00 38.02 4.51
3673 6729 1.029408 GCCGTATGTTCATGGGTGCA 61.029 55.000 0.00 0.00 0.00 4.57
3676 6732 1.448985 GTATGTTCATGGGTGCACGT 58.551 50.000 11.45 0.00 0.00 4.49
3677 6733 2.623535 GTATGTTCATGGGTGCACGTA 58.376 47.619 11.45 2.01 0.00 3.57
3709 6765 7.690256 AGAGTTTATTAGATTCCACTGGTGTT 58.310 34.615 0.00 0.00 0.00 3.32
3726 6782 3.424433 GGTGTTAGTCGATTTTGAAGGCG 60.424 47.826 0.00 0.00 0.00 5.52
3755 6811 8.554835 TTGTATTCTTGTCATTGGAATCGTTA 57.445 30.769 0.00 0.00 32.78 3.18
3790 6846 7.259882 TGCTATCAACTATTTTTGCCATTCTG 58.740 34.615 0.00 0.00 0.00 3.02
3801 6857 2.806434 TGCCATTCTGGTGCACTTATT 58.194 42.857 17.98 0.00 40.46 1.40
3815 6871 3.248602 GCACTTATTCGTTGCCAGGATAG 59.751 47.826 0.00 0.00 0.00 2.08
3860 6916 1.591594 CGGCGTCAGGTTGCGATAT 60.592 57.895 0.00 0.00 0.00 1.63
3872 6928 4.280174 AGGTTGCGATATATACTGTCCGTT 59.720 41.667 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.696707 TCGGTTGGTGTGTAGAAGAACT 59.303 45.455 0.00 0.00 0.00 3.01
1 2 3.102052 TCGGTTGGTGTGTAGAAGAAC 57.898 47.619 0.00 0.00 0.00 3.01
56 57 4.065088 TCAGAATAACTGCGCTCAAACTT 58.935 39.130 9.73 0.00 45.38 2.66
113 114 8.877864 TCACAAATTATCCCAGTTAAGACAAT 57.122 30.769 0.00 0.00 0.00 2.71
186 257 8.877864 TCACAAATTATCCCAGTTAAGACAAT 57.122 30.769 0.00 0.00 0.00 2.71
251 2608 3.957497 TGGCACTTGTTATTTGTGACCTT 59.043 39.130 0.00 0.00 38.84 3.50
332 2689 3.891977 GAGAGATGTACAGCCATAGTCCA 59.108 47.826 7.66 0.00 0.00 4.02
384 3166 1.650528 CTCTTGTGGAGGAGGAGGTT 58.349 55.000 0.00 0.00 38.35 3.50
385 3167 0.907230 GCTCTTGTGGAGGAGGAGGT 60.907 60.000 0.00 0.00 42.08 3.85
426 3217 0.536260 CTCTTGTGGAGGAGGAGCTG 59.464 60.000 0.00 0.00 38.35 4.24
452 3243 2.434428 AGCTTGACAAGGAGAGCAATG 58.566 47.619 16.80 0.00 37.59 2.82
453 3244 2.875094 AGCTTGACAAGGAGAGCAAT 57.125 45.000 16.80 0.00 37.59 3.56
485 3318 2.012673 GCCTGACATTACAGCTCCAAG 58.987 52.381 0.00 0.00 36.67 3.61
498 3331 0.178921 AGGAGAACCAGAGCCTGACA 60.179 55.000 4.00 0.00 38.94 3.58
506 3339 1.279496 CACCATGGAGGAGAACCAGA 58.721 55.000 21.47 0.00 40.89 3.86
509 3342 2.224066 CGATACACCATGGAGGAGAACC 60.224 54.545 21.47 0.00 41.22 3.62
510 3343 2.224066 CCGATACACCATGGAGGAGAAC 60.224 54.545 21.47 2.38 41.22 3.01
511 3344 2.039418 CCGATACACCATGGAGGAGAA 58.961 52.381 21.47 0.00 41.22 2.87
512 3345 1.704641 CCGATACACCATGGAGGAGA 58.295 55.000 21.47 0.47 41.22 3.71
513 3346 0.681733 CCCGATACACCATGGAGGAG 59.318 60.000 21.47 7.72 41.22 3.69
514 3347 1.407656 GCCCGATACACCATGGAGGA 61.408 60.000 21.47 7.95 41.22 3.71
515 3348 1.071471 GCCCGATACACCATGGAGG 59.929 63.158 21.47 12.77 45.67 4.30
516 3349 0.397941 ATGCCCGATACACCATGGAG 59.602 55.000 21.47 14.24 0.00 3.86
517 3350 0.843309 AATGCCCGATACACCATGGA 59.157 50.000 21.47 0.00 0.00 3.41
518 3351 2.426522 CTAATGCCCGATACACCATGG 58.573 52.381 11.19 11.19 0.00 3.66
519 3352 1.806542 GCTAATGCCCGATACACCATG 59.193 52.381 0.00 0.00 0.00 3.66
520 3353 1.419762 TGCTAATGCCCGATACACCAT 59.580 47.619 0.00 0.00 38.71 3.55
521 3354 0.833949 TGCTAATGCCCGATACACCA 59.166 50.000 0.00 0.00 38.71 4.17
522 3355 1.602377 GTTGCTAATGCCCGATACACC 59.398 52.381 0.00 0.00 38.71 4.16
528 3361 1.355796 CGTTCGTTGCTAATGCCCGA 61.356 55.000 0.00 0.00 38.91 5.14
611 3444 7.620880 TCTATATGCTTACTTTGTGTCCACTT 58.379 34.615 0.00 0.00 0.00 3.16
620 3453 8.200792 ACTCTTCCACTCTATATGCTTACTTTG 58.799 37.037 0.00 0.00 0.00 2.77
629 3462 6.567687 ATGTCGACTCTTCCACTCTATATG 57.432 41.667 17.92 0.00 0.00 1.78
676 3510 2.438434 GCCCCTGGATTGGACGTG 60.438 66.667 0.00 0.00 0.00 4.49
719 3553 4.437390 GCTAACCAATGTTTCTGTGGATCG 60.437 45.833 0.00 0.00 35.87 3.69
805 3804 1.064357 GGCTCTCGTCGGTTCTAGAAG 59.936 57.143 5.12 0.00 0.00 2.85
813 3812 0.034896 ATGTTTTGGCTCTCGTCGGT 59.965 50.000 0.00 0.00 0.00 4.69
840 3840 1.666872 AGGTCGCCTAAACACGTGC 60.667 57.895 17.22 0.00 28.47 5.34
862 3862 2.361104 GATGGCGGCCCAACAAGA 60.361 61.111 17.97 0.00 46.14 3.02
1548 4562 4.479993 GCGAGGGCATGGAGCTGT 62.480 66.667 0.00 0.00 44.79 4.40
1566 4580 4.684134 GCCAGCCCTGCTTTCCCA 62.684 66.667 0.00 0.00 36.40 4.37
2205 5219 1.221840 CTCCAGTGTAGGCCGCAAT 59.778 57.895 0.00 0.00 0.00 3.56
2588 5602 1.401905 CGTAAATCCTCTTTGCCTGCC 59.598 52.381 0.00 0.00 0.00 4.85
2936 5968 3.820467 TCCTAACAGTCAGCACCAAATTG 59.180 43.478 0.00 0.00 0.00 2.32
2997 6030 0.108585 GTCACCAAGCCTGTTCCAGA 59.891 55.000 0.00 0.00 32.44 3.86
3073 6106 2.485122 GAGTCCATTTTGCCCGCG 59.515 61.111 0.00 0.00 0.00 6.46
3095 6129 4.087182 TCTGGAAGTACTGGTCAACCTAG 58.913 47.826 0.00 0.00 33.70 3.02
3112 6146 1.330655 GGGAGCCTGTTCGATCTGGA 61.331 60.000 20.12 0.00 0.00 3.86
3214 6268 2.783135 AGAATGCAAGCCTCGAGAAAA 58.217 42.857 15.71 0.00 0.00 2.29
3339 6393 1.612950 GGCATTGTCACACCATTGTCA 59.387 47.619 0.00 0.00 31.66 3.58
3394 6449 1.730501 CAGAACATGCTGACCATCGT 58.269 50.000 0.00 0.00 38.14 3.73
3453 6508 3.059352 AGAATTTTGAGACGGTGGGAG 57.941 47.619 0.00 0.00 0.00 4.30
3454 6509 3.146066 CAAGAATTTTGAGACGGTGGGA 58.854 45.455 0.00 0.00 0.00 4.37
3455 6510 2.884639 ACAAGAATTTTGAGACGGTGGG 59.115 45.455 7.18 0.00 0.00 4.61
3456 6511 3.815401 AGACAAGAATTTTGAGACGGTGG 59.185 43.478 7.18 0.00 0.00 4.61
3457 6512 5.424121 AAGACAAGAATTTTGAGACGGTG 57.576 39.130 7.18 0.00 0.00 4.94
3459 6514 6.539649 TGTAAGACAAGAATTTTGAGACGG 57.460 37.500 7.18 0.00 0.00 4.79
3460 6515 8.895845 CAAATGTAAGACAAGAATTTTGAGACG 58.104 33.333 7.18 0.00 29.37 4.18
3462 6517 9.950680 GACAAATGTAAGACAAGAATTTTGAGA 57.049 29.630 8.74 0.00 31.32 3.27
3463 6518 9.956720 AGACAAATGTAAGACAAGAATTTTGAG 57.043 29.630 8.74 0.00 31.32 3.02
3471 6526 9.146984 CCGTATTTAGACAAATGTAAGACAAGA 57.853 33.333 0.00 0.00 35.88 3.02
3472 6527 9.146984 TCCGTATTTAGACAAATGTAAGACAAG 57.853 33.333 0.00 0.00 35.88 3.16
3473 6528 9.661563 ATCCGTATTTAGACAAATGTAAGACAA 57.338 29.630 0.00 0.00 35.88 3.18
3474 6529 9.093970 CATCCGTATTTAGACAAATGTAAGACA 57.906 33.333 0.00 0.00 35.88 3.41
3475 6530 9.095065 ACATCCGTATTTAGACAAATGTAAGAC 57.905 33.333 0.00 0.00 35.88 3.01
3480 6535 9.607988 TTGATACATCCGTATTTAGACAAATGT 57.392 29.630 0.00 0.00 38.48 2.71
3482 6537 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
3483 6538 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
3484 6539 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
3485 6540 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
3486 6541 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
3487 6542 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
3488 6543 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
3489 6544 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
3490 6545 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
3491 6546 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
3492 6547 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
3493 6548 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
3494 6549 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
3495 6550 4.435518 CCAAAACGTGACTTGATACATCCG 60.436 45.833 6.81 0.00 0.00 4.18
3496 6551 4.454504 ACCAAAACGTGACTTGATACATCC 59.545 41.667 6.81 0.00 0.00 3.51
3497 6552 5.607119 ACCAAAACGTGACTTGATACATC 57.393 39.130 6.81 0.00 0.00 3.06
3498 6553 7.681939 AATACCAAAACGTGACTTGATACAT 57.318 32.000 6.81 0.00 0.00 2.29
3499 6554 8.089597 TCTAATACCAAAACGTGACTTGATACA 58.910 33.333 6.81 0.00 0.00 2.29
3500 6555 8.470040 TCTAATACCAAAACGTGACTTGATAC 57.530 34.615 6.81 0.00 0.00 2.24
3502 6557 9.095065 GTATCTAATACCAAAACGTGACTTGAT 57.905 33.333 6.81 0.00 0.00 2.57
3503 6558 8.089597 TGTATCTAATACCAAAACGTGACTTGA 58.910 33.333 6.81 0.00 34.86 3.02
3504 6559 8.246908 TGTATCTAATACCAAAACGTGACTTG 57.753 34.615 0.00 0.00 34.86 3.16
3505 6560 9.444600 AATGTATCTAATACCAAAACGTGACTT 57.555 29.630 0.00 0.00 34.86 3.01
3506 6561 9.095065 GAATGTATCTAATACCAAAACGTGACT 57.905 33.333 0.00 0.00 34.86 3.41
3507 6562 8.054236 CGAATGTATCTAATACCAAAACGTGAC 58.946 37.037 0.00 0.00 34.86 3.67
3508 6563 7.760794 ACGAATGTATCTAATACCAAAACGTGA 59.239 33.333 0.00 0.00 34.86 4.35
3509 6564 7.902032 ACGAATGTATCTAATACCAAAACGTG 58.098 34.615 0.00 0.00 34.86 4.49
3510 6565 9.754382 ATACGAATGTATCTAATACCAAAACGT 57.246 29.630 0.00 0.00 36.56 3.99
3527 6582 9.517609 GTCTTAGATTTGTGTAGATACGAATGT 57.482 33.333 0.00 0.00 35.36 2.71
3528 6583 9.516314 TGTCTTAGATTTGTGTAGATACGAATG 57.484 33.333 0.00 0.00 35.36 2.67
3530 6585 9.569167 CTTGTCTTAGATTTGTGTAGATACGAA 57.431 33.333 0.00 0.00 0.00 3.85
3531 6586 8.953313 TCTTGTCTTAGATTTGTGTAGATACGA 58.047 33.333 0.00 0.00 0.00 3.43
3532 6587 9.569167 TTCTTGTCTTAGATTTGTGTAGATACG 57.431 33.333 0.00 0.00 0.00 3.06
3539 6594 8.143835 CCCAAAATTCTTGTCTTAGATTTGTGT 58.856 33.333 0.00 0.00 28.79 3.72
3540 6595 8.359642 TCCCAAAATTCTTGTCTTAGATTTGTG 58.640 33.333 0.00 0.00 28.79 3.33
3541 6596 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3542 6597 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3543 6598 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3544 6599 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3545 6600 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3546 6601 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3547 6602 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3548 6603 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3549 6604 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3550 6605 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3551 6606 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3552 6607 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3553 6608 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3554 6609 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3555 6610 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3556 6611 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3557 6612 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3558 6613 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3559 6614 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3560 6615 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3561 6616 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3562 6617 2.245546 TCTTTATACTCCCTCCGTCCCA 59.754 50.000 0.00 0.00 0.00 4.37
3563 6618 2.954792 TCTTTATACTCCCTCCGTCCC 58.045 52.381 0.00 0.00 0.00 4.46
3564 6619 4.587684 TCATTCTTTATACTCCCTCCGTCC 59.412 45.833 0.00 0.00 0.00 4.79
3565 6620 5.509332 GGTCATTCTTTATACTCCCTCCGTC 60.509 48.000 0.00 0.00 0.00 4.79
3566 6621 4.344390 GGTCATTCTTTATACTCCCTCCGT 59.656 45.833 0.00 0.00 0.00 4.69
3567 6622 4.558898 CGGTCATTCTTTATACTCCCTCCG 60.559 50.000 0.00 0.00 0.00 4.63
3568 6623 4.799917 GCGGTCATTCTTTATACTCCCTCC 60.800 50.000 0.00 0.00 0.00 4.30
3569 6624 4.308265 GCGGTCATTCTTTATACTCCCTC 58.692 47.826 0.00 0.00 0.00 4.30
3570 6625 3.071167 GGCGGTCATTCTTTATACTCCCT 59.929 47.826 0.00 0.00 0.00 4.20
3571 6626 3.181458 TGGCGGTCATTCTTTATACTCCC 60.181 47.826 0.00 0.00 0.00 4.30
3572 6627 4.067972 TGGCGGTCATTCTTTATACTCC 57.932 45.455 0.00 0.00 0.00 3.85
3573 6628 5.542779 AGATGGCGGTCATTCTTTATACTC 58.457 41.667 0.00 0.00 35.97 2.59
3574 6629 5.552870 AGATGGCGGTCATTCTTTATACT 57.447 39.130 0.00 0.00 35.97 2.12
3575 6630 6.619801 AAAGATGGCGGTCATTCTTTATAC 57.380 37.500 14.20 0.00 35.97 1.47
3576 6631 6.459573 GCAAAAGATGGCGGTCATTCTTTATA 60.460 38.462 15.38 0.00 34.87 0.98
3577 6632 5.679638 GCAAAAGATGGCGGTCATTCTTTAT 60.680 40.000 15.38 7.67 34.87 1.40
3578 6633 4.380444 GCAAAAGATGGCGGTCATTCTTTA 60.380 41.667 15.38 0.00 34.87 1.85
3579 6634 3.614870 GCAAAAGATGGCGGTCATTCTTT 60.615 43.478 11.59 11.59 36.12 2.52
3580 6635 2.094545 GCAAAAGATGGCGGTCATTCTT 60.095 45.455 0.00 0.00 35.97 2.52
3581 6636 1.474077 GCAAAAGATGGCGGTCATTCT 59.526 47.619 0.00 0.00 35.97 2.40
3582 6637 1.202114 TGCAAAAGATGGCGGTCATTC 59.798 47.619 0.00 0.00 35.97 2.67
3583 6638 1.255882 TGCAAAAGATGGCGGTCATT 58.744 45.000 0.00 0.00 35.97 2.57
3584 6639 1.406539 GATGCAAAAGATGGCGGTCAT 59.593 47.619 0.00 0.00 39.13 3.06
3585 6640 0.810648 GATGCAAAAGATGGCGGTCA 59.189 50.000 0.00 0.00 0.00 4.02
3586 6641 0.810648 TGATGCAAAAGATGGCGGTC 59.189 50.000 0.00 0.00 0.00 4.79
3636 6692 0.874390 GCTCAGCATCACGGTCAAAA 59.126 50.000 0.00 0.00 0.00 2.44
3637 6693 0.955428 GGCTCAGCATCACGGTCAAA 60.955 55.000 0.00 0.00 0.00 2.69
3656 6712 0.373370 CGTGCACCCATGAACATACG 59.627 55.000 12.15 0.00 33.29 3.06
3709 6765 5.180492 ACAAAATCGCCTTCAAAATCGACTA 59.820 36.000 0.00 0.00 33.59 2.59
3726 6782 9.013490 CGATTCCAATGACAAGAATACAAAATC 57.987 33.333 0.27 0.00 30.52 2.17
3755 6811 3.641434 AGTTGATAGCAGCAGGAATGT 57.359 42.857 0.00 0.00 0.00 2.71
3790 6846 0.878416 TGGCAACGAATAAGTGCACC 59.122 50.000 14.63 0.00 42.51 5.01
3801 6857 0.901827 TCTTGCTATCCTGGCAACGA 59.098 50.000 0.00 0.00 43.50 3.85
3815 6871 1.310933 CCTGGTGTGCCTGATCTTGC 61.311 60.000 0.00 0.00 35.96 4.01
3860 6916 4.562082 CTCAACCAACAACGGACAGTATA 58.438 43.478 0.00 0.00 0.00 1.47
3872 6928 1.209261 TCACACTGAGCTCAACCAACA 59.791 47.619 18.85 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.