Multiple sequence alignment - TraesCS3B01G373800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G373800 | chr3B | 100.000 | 4876 | 0 | 0 | 1 | 4876 | 586694125 | 586699000 | 0.000000e+00 | 9005.0 |
1 | TraesCS3B01G373800 | chr3B | 87.196 | 1601 | 143 | 28 | 2108 | 3676 | 83472932 | 83471362 | 0.000000e+00 | 1764.0 |
2 | TraesCS3B01G373800 | chr3B | 86.658 | 802 | 88 | 11 | 2886 | 3676 | 83468447 | 83467654 | 0.000000e+00 | 870.0 |
3 | TraesCS3B01G373800 | chr3B | 87.472 | 447 | 39 | 7 | 1660 | 2094 | 83473415 | 83472974 | 2.620000e-137 | 499.0 |
4 | TraesCS3B01G373800 | chr3B | 83.964 | 449 | 38 | 20 | 1076 | 1505 | 83473851 | 83473418 | 2.730000e-107 | 399.0 |
5 | TraesCS3B01G373800 | chr3B | 81.623 | 419 | 49 | 18 | 3763 | 4173 | 83467658 | 83467260 | 6.090000e-84 | 322.0 |
6 | TraesCS3B01G373800 | chr3B | 79.878 | 328 | 35 | 21 | 3763 | 4075 | 83471366 | 83471055 | 1.380000e-50 | 211.0 |
7 | TraesCS3B01G373800 | chr3B | 84.507 | 142 | 11 | 5 | 2650 | 2780 | 83468591 | 83468450 | 3.960000e-26 | 130.0 |
8 | TraesCS3B01G373800 | chr3B | 98.214 | 56 | 1 | 0 | 3714 | 3769 | 586697782 | 586697837 | 1.120000e-16 | 99.0 |
9 | TraesCS3B01G373800 | chr3B | 98.214 | 56 | 1 | 0 | 3658 | 3713 | 586697838 | 586697893 | 1.120000e-16 | 99.0 |
10 | TraesCS3B01G373800 | chr3B | 88.312 | 77 | 7 | 1 | 4336 | 4412 | 586731992 | 586732066 | 1.870000e-14 | 91.6 |
11 | TraesCS3B01G373800 | chr3B | 87.692 | 65 | 4 | 4 | 641 | 702 | 586694722 | 586694785 | 6.770000e-09 | 73.1 |
12 | TraesCS3B01G373800 | chr3B | 87.692 | 65 | 4 | 4 | 598 | 661 | 586694765 | 586694826 | 6.770000e-09 | 73.1 |
13 | TraesCS3B01G373800 | chr3D | 94.268 | 2111 | 95 | 18 | 2108 | 4204 | 447561398 | 447563496 | 0.000000e+00 | 3205.0 |
14 | TraesCS3B01G373800 | chr3D | 89.126 | 1030 | 50 | 34 | 636 | 1620 | 447559892 | 447560904 | 0.000000e+00 | 1225.0 |
15 | TraesCS3B01G373800 | chr3D | 87.640 | 712 | 72 | 11 | 2969 | 3676 | 52812426 | 52811727 | 0.000000e+00 | 813.0 |
16 | TraesCS3B01G373800 | chr3D | 95.127 | 513 | 22 | 2 | 4338 | 4848 | 447563589 | 447564100 | 0.000000e+00 | 806.0 |
17 | TraesCS3B01G373800 | chr3D | 87.368 | 475 | 37 | 17 | 1636 | 2091 | 447560853 | 447561323 | 1.560000e-144 | 523.0 |
18 | TraesCS3B01G373800 | chr3D | 84.116 | 447 | 24 | 16 | 95 | 524 | 447559471 | 447559887 | 5.920000e-104 | 388.0 |
19 | TraesCS3B01G373800 | chr3D | 83.178 | 428 | 56 | 3 | 4422 | 4848 | 447578666 | 447579078 | 1.280000e-100 | 377.0 |
20 | TraesCS3B01G373800 | chr3D | 96.875 | 128 | 4 | 0 | 1075 | 1202 | 52816697 | 52816570 | 1.060000e-51 | 215.0 |
21 | TraesCS3B01G373800 | chr3D | 96.429 | 56 | 1 | 1 | 1 | 55 | 447554346 | 447554401 | 1.870000e-14 | 91.6 |
22 | TraesCS3B01G373800 | chr3D | 100.000 | 45 | 0 | 0 | 598 | 642 | 447559897 | 447559941 | 3.130000e-12 | 84.2 |
23 | TraesCS3B01G373800 | chr3A | 87.356 | 1653 | 101 | 65 | 1 | 1614 | 588932924 | 588934507 | 0.000000e+00 | 1796.0 |
24 | TraesCS3B01G373800 | chr3A | 88.224 | 1036 | 95 | 13 | 2644 | 3657 | 64325709 | 64324679 | 0.000000e+00 | 1212.0 |
25 | TraesCS3B01G373800 | chr3A | 89.512 | 963 | 66 | 26 | 2121 | 3064 | 588934993 | 588935939 | 0.000000e+00 | 1186.0 |
26 | TraesCS3B01G373800 | chr3A | 94.516 | 620 | 31 | 2 | 3068 | 3685 | 588935973 | 588936591 | 0.000000e+00 | 953.0 |
27 | TraesCS3B01G373800 | chr3A | 90.855 | 503 | 37 | 2 | 4349 | 4848 | 588937155 | 588937651 | 0.000000e+00 | 665.0 |
28 | TraesCS3B01G373800 | chr3A | 93.864 | 440 | 18 | 6 | 3742 | 4180 | 588936564 | 588936995 | 0.000000e+00 | 654.0 |
29 | TraesCS3B01G373800 | chr3A | 89.813 | 481 | 31 | 12 | 1625 | 2091 | 588934450 | 588934926 | 6.980000e-168 | 601.0 |
30 | TraesCS3B01G373800 | chr3A | 90.676 | 429 | 40 | 0 | 4421 | 4849 | 589188265 | 589188693 | 5.480000e-159 | 571.0 |
31 | TraesCS3B01G373800 | chr3A | 82.009 | 428 | 61 | 3 | 4422 | 4848 | 589243282 | 589243694 | 2.790000e-92 | 350.0 |
32 | TraesCS3B01G373800 | chr3A | 81.166 | 446 | 49 | 21 | 1075 | 1505 | 64326468 | 64326043 | 4.710000e-85 | 326.0 |
33 | TraesCS3B01G373800 | chr3A | 81.633 | 294 | 35 | 11 | 3782 | 4074 | 64320007 | 64319732 | 4.910000e-55 | 226.0 |
34 | TraesCS3B01G373800 | chr3A | 100.000 | 28 | 0 | 0 | 3686 | 3713 | 588936564 | 588936591 | 9.000000e-03 | 52.8 |
35 | TraesCS3B01G373800 | chr3A | 100.000 | 28 | 0 | 0 | 3714 | 3741 | 588936564 | 588936591 | 9.000000e-03 | 52.8 |
36 | TraesCS3B01G373800 | chrUn | 87.640 | 712 | 72 | 11 | 2969 | 3676 | 304503119 | 304503818 | 0.000000e+00 | 813.0 |
37 | TraesCS3B01G373800 | chr1D | 87.692 | 130 | 15 | 1 | 1057 | 1186 | 6217943 | 6218071 | 3.040000e-32 | 150.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G373800 | chr3B | 586694125 | 586699000 | 4875 | False | 9005.000000 | 9005 | 100.000000 | 1 | 4876 | 1 | chr3B.!!$F1 | 4875 |
1 | TraesCS3B01G373800 | chr3B | 83467260 | 83473851 | 6591 | True | 599.285714 | 1764 | 84.471143 | 1076 | 4173 | 7 | chr3B.!!$R1 | 3097 |
2 | TraesCS3B01G373800 | chr3D | 447559471 | 447564100 | 4629 | False | 1038.533333 | 3205 | 91.667500 | 95 | 4848 | 6 | chr3D.!!$F3 | 4753 |
3 | TraesCS3B01G373800 | chr3D | 52811727 | 52812426 | 699 | True | 813.000000 | 813 | 87.640000 | 2969 | 3676 | 1 | chr3D.!!$R1 | 707 |
4 | TraesCS3B01G373800 | chr3A | 64324679 | 64326468 | 1789 | True | 769.000000 | 1212 | 84.695000 | 1075 | 3657 | 2 | chr3A.!!$R2 | 2582 |
5 | TraesCS3B01G373800 | chr3A | 588932924 | 588937651 | 4727 | False | 745.075000 | 1796 | 93.239500 | 1 | 4848 | 8 | chr3A.!!$F3 | 4847 |
6 | TraesCS3B01G373800 | chrUn | 304503119 | 304503818 | 699 | False | 813.000000 | 813 | 87.640000 | 2969 | 3676 | 1 | chrUn.!!$F1 | 707 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
71 | 72 | 0.038618 | TCGAGATCAACACCCACACG | 60.039 | 55.0 | 0.00 | 0.0 | 0.00 | 4.49 | F |
528 | 545 | 0.110328 | CGCACTTCTTCTTGCAGCAG | 60.110 | 55.0 | 0.00 | 0.0 | 38.76 | 4.24 | F |
1570 | 1686 | 0.179048 | TAACTGGCGATGGGCTGATG | 60.179 | 55.0 | 14.42 | 0.0 | 42.94 | 3.07 | F |
3161 | 3429 | 0.759346 | ATCCTCTAATGGTCCACGGC | 59.241 | 55.0 | 0.00 | 0.0 | 0.00 | 5.68 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1616 | 1732 | 0.466124 | TGTGTCATCACCGACCACAA | 59.534 | 50.0 | 0.00 | 0.0 | 43.26 | 3.33 | R |
1921 | 2054 | 0.545071 | AAGGGGGTGCTTTCAATGGG | 60.545 | 55.0 | 0.00 | 0.0 | 0.00 | 4.00 | R |
3164 | 3432 | 1.975363 | GCCTCGCTGTGATCTTGTGC | 61.975 | 60.0 | 0.00 | 0.0 | 0.00 | 4.57 | R |
4534 | 8645 | 0.179073 | CCACCGGAGAGCATTTCGAT | 60.179 | 55.0 | 9.46 | 0.0 | 0.00 | 3.59 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
36 | 37 | 0.935194 | TCCCTTCTACTCCTCCTCCC | 59.065 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
37 | 38 | 0.938192 | CCCTTCTACTCCTCCTCCCT | 59.062 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
41 | 42 | 0.048117 | TCTACTCCTCCTCCCTCCCT | 59.952 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
42 | 43 | 0.187361 | CTACTCCTCCTCCCTCCCTG | 59.813 | 65.000 | 0.00 | 0.00 | 0.00 | 4.45 |
43 | 44 | 1.950748 | TACTCCTCCTCCCTCCCTGC | 61.951 | 65.000 | 0.00 | 0.00 | 0.00 | 4.85 |
44 | 45 | 4.095400 | TCCTCCTCCCTCCCTGCC | 62.095 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
46 | 47 | 4.101077 | CTCCTCCCTCCCTGCCCT | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 5.19 |
47 | 48 | 2.623763 | TCCTCCCTCCCTGCCCTA | 60.624 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
48 | 49 | 2.027059 | TCCTCCCTCCCTGCCCTAT | 61.027 | 63.158 | 0.00 | 0.00 | 0.00 | 2.57 |
49 | 50 | 1.537643 | CCTCCCTCCCTGCCCTATC | 60.538 | 68.421 | 0.00 | 0.00 | 0.00 | 2.08 |
50 | 51 | 1.537643 | CTCCCTCCCTGCCCTATCC | 60.538 | 68.421 | 0.00 | 0.00 | 0.00 | 2.59 |
51 | 52 | 2.290393 | CCCTCCCTGCCCTATCCA | 59.710 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
52 | 53 | 1.151721 | CCCTCCCTGCCCTATCCAT | 60.152 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
53 | 54 | 1.204113 | CCCTCCCTGCCCTATCCATC | 61.204 | 65.000 | 0.00 | 0.00 | 0.00 | 3.51 |
54 | 55 | 1.548357 | CCTCCCTGCCCTATCCATCG | 61.548 | 65.000 | 0.00 | 0.00 | 0.00 | 3.84 |
55 | 56 | 0.542938 | CTCCCTGCCCTATCCATCGA | 60.543 | 60.000 | 0.00 | 0.00 | 0.00 | 3.59 |
56 | 57 | 0.542938 | TCCCTGCCCTATCCATCGAG | 60.543 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
57 | 58 | 0.542938 | CCCTGCCCTATCCATCGAGA | 60.543 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
58 | 59 | 1.566211 | CCTGCCCTATCCATCGAGAT | 58.434 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
59 | 60 | 1.480137 | CCTGCCCTATCCATCGAGATC | 59.520 | 57.143 | 0.00 | 0.00 | 0.00 | 2.75 |
60 | 61 | 2.174360 | CTGCCCTATCCATCGAGATCA | 58.826 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
61 | 62 | 2.564504 | CTGCCCTATCCATCGAGATCAA | 59.435 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
62 | 63 | 2.300152 | TGCCCTATCCATCGAGATCAAC | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
63 | 64 | 2.300152 | GCCCTATCCATCGAGATCAACA | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
64 | 65 | 3.862642 | GCCCTATCCATCGAGATCAACAC | 60.863 | 52.174 | 0.00 | 0.00 | 0.00 | 3.32 |
65 | 66 | 3.306364 | CCCTATCCATCGAGATCAACACC | 60.306 | 52.174 | 0.00 | 0.00 | 0.00 | 4.16 |
66 | 67 | 2.918712 | ATCCATCGAGATCAACACCC | 57.081 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
67 | 68 | 1.567357 | TCCATCGAGATCAACACCCA | 58.433 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
71 | 72 | 0.038618 | TCGAGATCAACACCCACACG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
73 | 74 | 1.298859 | GAGATCAACACCCACACGGC | 61.299 | 60.000 | 0.00 | 0.00 | 33.26 | 5.68 |
83 | 84 | 2.821810 | CACACGGCCACACACACA | 60.822 | 61.111 | 2.24 | 0.00 | 0.00 | 3.72 |
84 | 85 | 2.822255 | ACACGGCCACACACACAC | 60.822 | 61.111 | 2.24 | 0.00 | 0.00 | 3.82 |
86 | 87 | 4.868116 | ACGGCCACACACACACCC | 62.868 | 66.667 | 2.24 | 0.00 | 0.00 | 4.61 |
87 | 88 | 4.866224 | CGGCCACACACACACCCA | 62.866 | 66.667 | 2.24 | 0.00 | 0.00 | 4.51 |
148 | 157 | 0.895559 | CCTTGACCAGGCAAGAACCC | 60.896 | 60.000 | 14.96 | 0.00 | 46.31 | 4.11 |
245 | 254 | 4.007457 | GCATCCTTCAAGCCAGCA | 57.993 | 55.556 | 0.00 | 0.00 | 0.00 | 4.41 |
246 | 255 | 1.509923 | GCATCCTTCAAGCCAGCAC | 59.490 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
263 | 272 | 4.463879 | CCAGCACTGCGAGGAGGG | 62.464 | 72.222 | 9.29 | 0.00 | 32.04 | 4.30 |
270 | 279 | 1.984570 | CTGCGAGGAGGGGAGTGAA | 60.985 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
273 | 282 | 1.617947 | GCGAGGAGGGGAGTGAATGT | 61.618 | 60.000 | 0.00 | 0.00 | 0.00 | 2.71 |
347 | 364 | 5.830991 | AGAGAGAGAGAGAGAGAGAGAGTAC | 59.169 | 48.000 | 0.00 | 0.00 | 0.00 | 2.73 |
381 | 398 | 0.111253 | AGTTCCCTGCCTGGTTTCTG | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
462 | 479 | 2.414825 | CTGCCGCTTCTTCTTCTTCTTC | 59.585 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
463 | 480 | 2.037772 | TGCCGCTTCTTCTTCTTCTTCT | 59.962 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
464 | 481 | 2.670905 | GCCGCTTCTTCTTCTTCTTCTC | 59.329 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
502 | 519 | 3.257127 | AGACACCTCTTCTTCTTTCTCCG | 59.743 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
526 | 543 | 0.165511 | CTCGCACTTCTTCTTGCAGC | 59.834 | 55.000 | 0.00 | 0.00 | 38.76 | 5.25 |
527 | 544 | 0.532640 | TCGCACTTCTTCTTGCAGCA | 60.533 | 50.000 | 0.00 | 0.00 | 38.76 | 4.41 |
528 | 545 | 0.110328 | CGCACTTCTTCTTGCAGCAG | 60.110 | 55.000 | 0.00 | 0.00 | 38.76 | 4.24 |
529 | 546 | 0.386985 | GCACTTCTTCTTGCAGCAGC | 60.387 | 55.000 | 0.00 | 0.00 | 38.68 | 5.25 |
731 | 782 | 4.680237 | TCCGGCAGCACACTTCGG | 62.680 | 66.667 | 0.00 | 0.00 | 39.95 | 4.30 |
740 | 791 | 1.507141 | GCACACTTCGGTCCCAACAG | 61.507 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
743 | 794 | 0.944311 | CACTTCGGTCCCAACAGTCG | 60.944 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
761 | 812 | 1.064458 | GCGGTTCGAGCTCTCTACC | 59.936 | 63.158 | 12.85 | 14.25 | 0.00 | 3.18 |
769 | 820 | 2.692557 | TCGAGCTCTCTACCTACGTACT | 59.307 | 50.000 | 12.85 | 0.00 | 0.00 | 2.73 |
966 | 1035 | 0.610232 | CTTTTCTCCCCACAGCCTGG | 60.610 | 60.000 | 0.00 | 0.00 | 40.26 | 4.45 |
1284 | 1380 | 5.293569 | CGAGTAAAAGTCTCTCTCTCTCTCC | 59.706 | 48.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1285 | 1381 | 6.388619 | AGTAAAAGTCTCTCTCTCTCTCCT | 57.611 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1446 | 1560 | 4.640364 | TCCATTTCACCAATTTTCTTGGC | 58.360 | 39.130 | 3.94 | 0.00 | 43.23 | 4.52 |
1480 | 1596 | 5.108254 | GCTTTTAGTTTTGTCACTTCATGCG | 60.108 | 40.000 | 0.00 | 0.00 | 0.00 | 4.73 |
1497 | 1613 | 1.973281 | CGTGAGCAAGCCCCAACAT | 60.973 | 57.895 | 0.00 | 0.00 | 0.00 | 2.71 |
1506 | 1622 | 2.362077 | CAAGCCCCAACATATTGCTACC | 59.638 | 50.000 | 0.00 | 0.00 | 34.17 | 3.18 |
1526 | 1642 | 2.029728 | CCGCTCTTCTTGTTAATGCTCG | 59.970 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1543 | 1659 | 4.565022 | TGCTCGTATCATTGTTCAGTCAA | 58.435 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
1558 | 1674 | 6.533367 | TGTTCAGTCAATTGTTTTTAACTGGC | 59.467 | 34.615 | 17.71 | 13.07 | 35.86 | 4.85 |
1564 | 1680 | 3.651803 | TTGTTTTTAACTGGCGATGGG | 57.348 | 42.857 | 0.00 | 0.00 | 0.00 | 4.00 |
1565 | 1681 | 1.271102 | TGTTTTTAACTGGCGATGGGC | 59.729 | 47.619 | 0.00 | 0.00 | 42.51 | 5.36 |
1566 | 1682 | 1.544246 | GTTTTTAACTGGCGATGGGCT | 59.456 | 47.619 | 2.36 | 0.00 | 42.94 | 5.19 |
1567 | 1683 | 1.173043 | TTTTAACTGGCGATGGGCTG | 58.827 | 50.000 | 6.62 | 6.62 | 42.94 | 4.85 |
1568 | 1684 | 0.326595 | TTTAACTGGCGATGGGCTGA | 59.673 | 50.000 | 14.42 | 0.00 | 42.94 | 4.26 |
1569 | 1685 | 0.546122 | TTAACTGGCGATGGGCTGAT | 59.454 | 50.000 | 14.42 | 5.75 | 42.94 | 2.90 |
1570 | 1686 | 0.179048 | TAACTGGCGATGGGCTGATG | 60.179 | 55.000 | 14.42 | 0.00 | 42.94 | 3.07 |
1571 | 1687 | 2.593725 | CTGGCGATGGGCTGATGG | 60.594 | 66.667 | 2.36 | 0.00 | 42.94 | 3.51 |
1600 | 1716 | 4.157289 | CCATTTCACTTTGCTCATGCTAGT | 59.843 | 41.667 | 0.00 | 0.00 | 40.48 | 2.57 |
1603 | 1719 | 4.128925 | TCACTTTGCTCATGCTAGTAGG | 57.871 | 45.455 | 0.00 | 0.00 | 40.48 | 3.18 |
1615 | 1731 | 5.817296 | TCATGCTAGTAGGTGCTTATTTGTG | 59.183 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1616 | 1732 | 5.160607 | TGCTAGTAGGTGCTTATTTGTGT | 57.839 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
1617 | 1733 | 5.556915 | TGCTAGTAGGTGCTTATTTGTGTT | 58.443 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
1618 | 1734 | 5.411361 | TGCTAGTAGGTGCTTATTTGTGTTG | 59.589 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1619 | 1735 | 5.411669 | GCTAGTAGGTGCTTATTTGTGTTGT | 59.588 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1620 | 1736 | 5.689383 | AGTAGGTGCTTATTTGTGTTGTG | 57.311 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
1621 | 1737 | 4.518970 | AGTAGGTGCTTATTTGTGTTGTGG | 59.481 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
1622 | 1738 | 3.295973 | AGGTGCTTATTTGTGTTGTGGT | 58.704 | 40.909 | 0.00 | 0.00 | 0.00 | 4.16 |
1623 | 1739 | 3.317993 | AGGTGCTTATTTGTGTTGTGGTC | 59.682 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
1628 | 1744 | 2.045561 | ATTTGTGTTGTGGTCGGTGA | 57.954 | 45.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1665 | 1782 | 3.006110 | ACCATTTCACTTTGTCCATGCTG | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
1685 | 1802 | 1.450025 | GTAGGTGCTTAGTTGTGGCC | 58.550 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1718 | 1839 | 6.173339 | TCCTTTGAGATTATCTGGTGTTGTC | 58.827 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1811 | 1944 | 9.362539 | CATTTTCTATCATTAATTATGCAGGGC | 57.637 | 33.333 | 0.00 | 0.00 | 34.06 | 5.19 |
1894 | 2027 | 8.543774 | ACATCCTCTTGATTAGTGTAACAAGAT | 58.456 | 33.333 | 0.00 | 0.00 | 44.52 | 2.40 |
1897 | 2030 | 8.188799 | TCCTCTTGATTAGTGTAACAAGATACG | 58.811 | 37.037 | 0.00 | 0.00 | 44.52 | 3.06 |
1898 | 2031 | 7.974501 | CCTCTTGATTAGTGTAACAAGATACGT | 59.025 | 37.037 | 0.00 | 0.00 | 44.52 | 3.57 |
1921 | 2054 | 8.818057 | ACGTATTTGAGAGATTGTGTTATTAGC | 58.182 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
1935 | 2068 | 4.159506 | TGTTATTAGCCCATTGAAAGCACC | 59.840 | 41.667 | 0.00 | 0.00 | 0.00 | 5.01 |
1992 | 2129 | 2.360350 | ATTGGTGGCGCAGACCAG | 60.360 | 61.111 | 24.56 | 0.00 | 44.36 | 4.00 |
2003 | 2140 | 0.886563 | GCAGACCAGCAAGAGCAAAT | 59.113 | 50.000 | 0.00 | 0.00 | 45.49 | 2.32 |
2019 | 2160 | 3.197265 | GCAAATGCTCAACCACAAAACT | 58.803 | 40.909 | 0.00 | 0.00 | 38.21 | 2.66 |
2020 | 2161 | 3.001533 | GCAAATGCTCAACCACAAAACTG | 59.998 | 43.478 | 0.00 | 0.00 | 38.21 | 3.16 |
2029 | 2170 | 6.636850 | GCTCAACCACAAAACTGTACAATAAG | 59.363 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
2056 | 2198 | 7.643579 | ACATAACTGCAAGAAAGAAGAAGAAC | 58.356 | 34.615 | 0.00 | 0.00 | 37.43 | 3.01 |
2094 | 2236 | 5.677319 | ACTGCCAAATAAGACTAGCTGTA | 57.323 | 39.130 | 0.00 | 0.00 | 31.78 | 2.74 |
2095 | 2237 | 6.240549 | ACTGCCAAATAAGACTAGCTGTAT | 57.759 | 37.500 | 0.00 | 0.00 | 31.78 | 2.29 |
2096 | 2238 | 6.653989 | ACTGCCAAATAAGACTAGCTGTATT | 58.346 | 36.000 | 0.00 | 0.00 | 34.21 | 1.89 |
2097 | 2239 | 7.112779 | ACTGCCAAATAAGACTAGCTGTATTT | 58.887 | 34.615 | 0.00 | 0.00 | 31.90 | 1.40 |
2099 | 2241 | 8.348285 | TGCCAAATAAGACTAGCTGTATTTTT | 57.652 | 30.769 | 0.00 | 0.00 | 31.90 | 1.94 |
2255 | 2455 | 2.673775 | TTCCATGCTCCCTGTGAAAA | 57.326 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2271 | 2471 | 8.562892 | CCCTGTGAAAATAAGCTGAATACTATG | 58.437 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
2349 | 2555 | 3.177884 | AGGCTGGGCTCACACCAA | 61.178 | 61.111 | 3.75 | 0.00 | 37.59 | 3.67 |
2350 | 2556 | 2.036256 | GGCTGGGCTCACACCAAT | 59.964 | 61.111 | 0.00 | 0.00 | 37.59 | 3.16 |
2373 | 2579 | 8.455682 | CAATGCATTGGAAGAATTTATTTGCTT | 58.544 | 29.630 | 28.34 | 0.00 | 34.22 | 3.91 |
2540 | 2755 | 7.096551 | ACCTTAAACGCTGCAAAATAAATGAT | 58.903 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
2745 | 2966 | 9.520204 | CCATTCCAATAATTTTATCACTCACAC | 57.480 | 33.333 | 0.00 | 0.00 | 0.00 | 3.82 |
2761 | 2988 | 1.265095 | CACACTGCACACTTGTCCATC | 59.735 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
2776 | 3003 | 4.744570 | TGTCCATCTCGTAGTGAAACATC | 58.255 | 43.478 | 0.00 | 0.00 | 41.43 | 3.06 |
2792 | 3019 | 9.561069 | AGTGAAACATCAGTTGATACTTTACTT | 57.439 | 29.630 | 0.00 | 0.00 | 41.43 | 2.24 |
2793 | 3020 | 9.813080 | GTGAAACATCAGTTGATACTTTACTTC | 57.187 | 33.333 | 0.00 | 0.00 | 38.17 | 3.01 |
2794 | 3021 | 8.999431 | TGAAACATCAGTTGATACTTTACTTCC | 58.001 | 33.333 | 0.00 | 0.00 | 38.17 | 3.46 |
2795 | 3022 | 8.918202 | AAACATCAGTTGATACTTTACTTCCA | 57.082 | 30.769 | 0.00 | 0.00 | 38.17 | 3.53 |
3075 | 3338 | 7.067129 | TGGTCTATTCTACTGTAGCAGTTAGTG | 59.933 | 40.741 | 9.98 | 0.00 | 42.59 | 2.74 |
3083 | 3346 | 9.419297 | TCTACTGTAGCAGTTAGTGTATTTTTG | 57.581 | 33.333 | 9.98 | 0.00 | 42.59 | 2.44 |
3088 | 3351 | 8.679100 | TGTAGCAGTTAGTGTATTTTTGTTGTT | 58.321 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
3107 | 3375 | 8.183830 | TGTTGTTTCAAGTGACATTTCAATTC | 57.816 | 30.769 | 0.00 | 0.00 | 37.96 | 2.17 |
3155 | 3423 | 5.594725 | TCTGTACTGTGATCCTCTAATGGTC | 59.405 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3161 | 3429 | 0.759346 | ATCCTCTAATGGTCCACGGC | 59.241 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3164 | 3432 | 2.203015 | CTAATGGTCCACGGCGGG | 60.203 | 66.667 | 13.24 | 7.16 | 34.36 | 6.13 |
3281 | 3549 | 7.559170 | AGCAAGCAAAAGATAAAGGATATCACT | 59.441 | 33.333 | 4.83 | 0.00 | 0.00 | 3.41 |
3570 | 3841 | 1.366366 | GGTCCGATGTATGGGTCCG | 59.634 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
3685 | 7752 | 8.812972 | ACACCATTTCTTCAGTAGACAGTATAA | 58.187 | 33.333 | 0.00 | 0.00 | 30.90 | 0.98 |
3686 | 7753 | 9.653287 | CACCATTTCTTCAGTAGACAGTATAAA | 57.347 | 33.333 | 0.00 | 0.00 | 30.90 | 1.40 |
3691 | 7758 | 9.485206 | TTTCTTCAGTAGACAGTATAAAACACC | 57.515 | 33.333 | 0.00 | 0.00 | 30.90 | 4.16 |
3692 | 7759 | 8.185506 | TCTTCAGTAGACAGTATAAAACACCA | 57.814 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
3693 | 7760 | 8.812972 | TCTTCAGTAGACAGTATAAAACACCAT | 58.187 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
3694 | 7761 | 9.436957 | CTTCAGTAGACAGTATAAAACACCATT | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3695 | 7762 | 9.787435 | TTCAGTAGACAGTATAAAACACCATTT | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
3696 | 7763 | 9.431887 | TCAGTAGACAGTATAAAACACCATTTC | 57.568 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
3697 | 7764 | 9.436957 | CAGTAGACAGTATAAAACACCATTTCT | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3700 | 7767 | 8.918202 | AGACAGTATAAAACACCATTTCTTCA | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
3701 | 7768 | 9.003658 | AGACAGTATAAAACACCATTTCTTCAG | 57.996 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3702 | 7769 | 8.691661 | ACAGTATAAAACACCATTTCTTCAGT | 57.308 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
3703 | 7770 | 9.787435 | ACAGTATAAAACACCATTTCTTCAGTA | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 2.74 |
3707 | 7774 | 8.918202 | ATAAAACACCATTTCTTCAGTAGACA | 57.082 | 30.769 | 0.00 | 0.00 | 30.90 | 3.41 |
3708 | 7775 | 6.867662 | AAACACCATTTCTTCAGTAGACAG | 57.132 | 37.500 | 0.00 | 0.00 | 30.90 | 3.51 |
3709 | 7776 | 5.552870 | ACACCATTTCTTCAGTAGACAGT | 57.447 | 39.130 | 0.00 | 0.00 | 30.90 | 3.55 |
3710 | 7777 | 6.665992 | ACACCATTTCTTCAGTAGACAGTA | 57.334 | 37.500 | 0.00 | 0.00 | 30.90 | 2.74 |
3711 | 7778 | 7.246171 | ACACCATTTCTTCAGTAGACAGTAT | 57.754 | 36.000 | 0.00 | 0.00 | 30.90 | 2.12 |
3712 | 7779 | 8.362464 | ACACCATTTCTTCAGTAGACAGTATA | 57.638 | 34.615 | 0.00 | 0.00 | 30.90 | 1.47 |
3713 | 7780 | 8.812972 | ACACCATTTCTTCAGTAGACAGTATAA | 58.187 | 33.333 | 0.00 | 0.00 | 30.90 | 0.98 |
3714 | 7781 | 9.653287 | CACCATTTCTTCAGTAGACAGTATAAA | 57.347 | 33.333 | 0.00 | 0.00 | 30.90 | 1.40 |
3719 | 7786 | 9.485206 | TTTCTTCAGTAGACAGTATAAAACACC | 57.515 | 33.333 | 0.00 | 0.00 | 30.90 | 4.16 |
3720 | 7787 | 8.185506 | TCTTCAGTAGACAGTATAAAACACCA | 57.814 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
3721 | 7788 | 8.812972 | TCTTCAGTAGACAGTATAAAACACCAT | 58.187 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
3722 | 7789 | 9.436957 | CTTCAGTAGACAGTATAAAACACCATT | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3723 | 7790 | 9.787435 | TTCAGTAGACAGTATAAAACACCATTT | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
3724 | 7791 | 9.431887 | TCAGTAGACAGTATAAAACACCATTTC | 57.568 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
3725 | 7792 | 9.436957 | CAGTAGACAGTATAAAACACCATTTCT | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3728 | 7795 | 8.918202 | AGACAGTATAAAACACCATTTCTTCA | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
3729 | 7796 | 9.003658 | AGACAGTATAAAACACCATTTCTTCAG | 57.996 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3730 | 7797 | 8.691661 | ACAGTATAAAACACCATTTCTTCAGT | 57.308 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
3731 | 7798 | 9.787435 | ACAGTATAAAACACCATTTCTTCAGTA | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 2.74 |
3735 | 7802 | 8.918202 | ATAAAACACCATTTCTTCAGTAGACA | 57.082 | 30.769 | 0.00 | 0.00 | 30.90 | 3.41 |
3736 | 7803 | 6.867662 | AAACACCATTTCTTCAGTAGACAG | 57.132 | 37.500 | 0.00 | 0.00 | 30.90 | 3.51 |
3737 | 7804 | 5.552870 | ACACCATTTCTTCAGTAGACAGT | 57.447 | 39.130 | 0.00 | 0.00 | 30.90 | 3.55 |
3738 | 7805 | 6.665992 | ACACCATTTCTTCAGTAGACAGTA | 57.334 | 37.500 | 0.00 | 0.00 | 30.90 | 2.74 |
3739 | 7806 | 7.246171 | ACACCATTTCTTCAGTAGACAGTAT | 57.754 | 36.000 | 0.00 | 0.00 | 30.90 | 2.12 |
3740 | 7807 | 8.362464 | ACACCATTTCTTCAGTAGACAGTATA | 57.638 | 34.615 | 0.00 | 0.00 | 30.90 | 1.47 |
3741 | 7808 | 8.812972 | ACACCATTTCTTCAGTAGACAGTATAA | 58.187 | 33.333 | 0.00 | 0.00 | 30.90 | 0.98 |
3742 | 7809 | 9.653287 | CACCATTTCTTCAGTAGACAGTATAAA | 57.347 | 33.333 | 0.00 | 0.00 | 30.90 | 1.40 |
3747 | 7814 | 9.485206 | TTTCTTCAGTAGACAGTATAAAACACC | 57.515 | 33.333 | 0.00 | 0.00 | 30.90 | 4.16 |
3748 | 7815 | 8.185506 | TCTTCAGTAGACAGTATAAAACACCA | 57.814 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
3749 | 7816 | 8.812972 | TCTTCAGTAGACAGTATAAAACACCAT | 58.187 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
3750 | 7817 | 9.436957 | CTTCAGTAGACAGTATAAAACACCATT | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3751 | 7818 | 9.787435 | TTCAGTAGACAGTATAAAACACCATTT | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
3752 | 7819 | 9.431887 | TCAGTAGACAGTATAAAACACCATTTC | 57.568 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
3753 | 7820 | 9.436957 | CAGTAGACAGTATAAAACACCATTTCT | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3756 | 7823 | 8.918202 | AGACAGTATAAAACACCATTTCTTCA | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
3757 | 7824 | 9.003658 | AGACAGTATAAAACACCATTTCTTCAG | 57.996 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3758 | 7825 | 7.593825 | ACAGTATAAAACACCATTTCTTCAGC | 58.406 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
3759 | 7826 | 7.230510 | ACAGTATAAAACACCATTTCTTCAGCA | 59.769 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
3760 | 7827 | 7.752239 | CAGTATAAAACACCATTTCTTCAGCAG | 59.248 | 37.037 | 0.00 | 0.00 | 0.00 | 4.24 |
3761 | 7828 | 6.899393 | ATAAAACACCATTTCTTCAGCAGA | 57.101 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
3762 | 7829 | 4.574599 | AAACACCATTTCTTCAGCAGAC | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
3763 | 7830 | 3.213206 | ACACCATTTCTTCAGCAGACA | 57.787 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
3764 | 7831 | 3.144506 | ACACCATTTCTTCAGCAGACAG | 58.855 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
3765 | 7832 | 3.144506 | CACCATTTCTTCAGCAGACAGT | 58.855 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
3766 | 7833 | 4.202357 | ACACCATTTCTTCAGCAGACAGTA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3767 | 7834 | 4.940046 | CACCATTTCTTCAGCAGACAGTAT | 59.060 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
3768 | 7835 | 6.108687 | CACCATTTCTTCAGCAGACAGTATA | 58.891 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
3776 | 7843 | 7.454225 | TCTTCAGCAGACAGTATAGCTCTATA | 58.546 | 38.462 | 0.00 | 0.00 | 34.61 | 1.31 |
3809 | 7879 | 6.544931 | ACTGAATCTGATATGATGTTGGTTGG | 59.455 | 38.462 | 0.00 | 0.00 | 0.00 | 3.77 |
3810 | 7880 | 6.425735 | TGAATCTGATATGATGTTGGTTGGT | 58.574 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3883 | 7953 | 4.968197 | GTCTGGGTGACACGAGAC | 57.032 | 61.111 | 16.39 | 16.39 | 44.73 | 3.36 |
3896 | 7966 | 0.665369 | ACGAGACGTTGTTTAGCCGG | 60.665 | 55.000 | 0.00 | 0.00 | 36.35 | 6.13 |
3941 | 8011 | 3.218453 | TGCCTTAGTGTAAAAAGCAGCA | 58.782 | 40.909 | 0.00 | 0.00 | 0.00 | 4.41 |
4010 | 8080 | 1.880027 | GCTCGAGTGGAATTGGTTTGT | 59.120 | 47.619 | 15.13 | 0.00 | 0.00 | 2.83 |
4022 | 8092 | 3.512033 | TTGGTTTGTTTTTCTCGTGGG | 57.488 | 42.857 | 0.00 | 0.00 | 0.00 | 4.61 |
4040 | 8111 | 4.579869 | GTGGGAATAGTTTGAGAAGCTGA | 58.420 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
4041 | 8112 | 5.189180 | GTGGGAATAGTTTGAGAAGCTGAT | 58.811 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
4099 | 8173 | 0.865769 | CAAGTGTTGGTACGCAGACC | 59.134 | 55.000 | 0.00 | 0.00 | 40.21 | 3.85 |
4145 | 8219 | 4.058721 | AGCTGTTTTGGGTGTTCATTTC | 57.941 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
4149 | 8223 | 4.753233 | TGTTTTGGGTGTTCATTTCTGTG | 58.247 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
4160 | 8234 | 4.944619 | TCATTTCTGTGAGACTCAGTGT | 57.055 | 40.909 | 5.10 | 0.00 | 34.86 | 3.55 |
4161 | 8235 | 5.282055 | TCATTTCTGTGAGACTCAGTGTT | 57.718 | 39.130 | 5.10 | 0.00 | 34.86 | 3.32 |
4189 | 8263 | 8.773404 | ACAGTGTAAATGTAACTATCAGAACC | 57.227 | 34.615 | 0.00 | 0.00 | 47.00 | 3.62 |
4191 | 8265 | 8.656849 | CAGTGTAAATGTAACTATCAGAACCAC | 58.343 | 37.037 | 0.00 | 0.00 | 0.00 | 4.16 |
4194 | 8268 | 5.670792 | AATGTAACTATCAGAACCACCGA | 57.329 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
4201 | 8275 | 5.844004 | ACTATCAGAACCACCGATTATGTC | 58.156 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
4213 | 8287 | 4.170125 | CGATTATGTCGCTCACAAACTC | 57.830 | 45.455 | 0.00 | 0.00 | 44.33 | 3.01 |
4214 | 8288 | 3.859961 | CGATTATGTCGCTCACAAACTCT | 59.140 | 43.478 | 0.00 | 0.00 | 44.33 | 3.24 |
4215 | 8289 | 4.027295 | CGATTATGTCGCTCACAAACTCTC | 60.027 | 45.833 | 0.00 | 0.00 | 44.33 | 3.20 |
4216 | 8290 | 2.086054 | ATGTCGCTCACAAACTCTCC | 57.914 | 50.000 | 0.00 | 0.00 | 38.97 | 3.71 |
4217 | 8291 | 1.040646 | TGTCGCTCACAAACTCTCCT | 58.959 | 50.000 | 0.00 | 0.00 | 29.30 | 3.69 |
4218 | 8292 | 1.412710 | TGTCGCTCACAAACTCTCCTT | 59.587 | 47.619 | 0.00 | 0.00 | 29.30 | 3.36 |
4219 | 8293 | 1.795286 | GTCGCTCACAAACTCTCCTTG | 59.205 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
4220 | 8294 | 1.151668 | CGCTCACAAACTCTCCTTGG | 58.848 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4221 | 8295 | 1.270305 | CGCTCACAAACTCTCCTTGGA | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
4222 | 8296 | 2.421619 | GCTCACAAACTCTCCTTGGAG | 58.578 | 52.381 | 10.28 | 10.28 | 39.09 | 3.86 |
4223 | 8297 | 2.037772 | GCTCACAAACTCTCCTTGGAGA | 59.962 | 50.000 | 17.37 | 17.37 | 37.13 | 3.71 |
4257 | 8331 | 3.321682 | CCAGGCCTCTGAAAAATCAACAA | 59.678 | 43.478 | 0.00 | 0.00 | 43.49 | 2.83 |
4277 | 8351 | 7.232534 | TCAACAAAGTTTCCAGCCAATATAACT | 59.767 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4278 | 8352 | 6.924111 | ACAAAGTTTCCAGCCAATATAACTG | 58.076 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4280 | 8354 | 6.515272 | AAGTTTCCAGCCAATATAACTGTG | 57.485 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
4295 | 8369 | 8.691661 | ATATAACTGTGGCGGAAAAGAATTAT | 57.308 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
4305 | 8382 | 7.041372 | TGGCGGAAAAGAATTATAGTTAGCATC | 60.041 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
4334 | 8412 | 1.673033 | GCACTCGCCAACAGTGTCTAT | 60.673 | 52.381 | 0.00 | 0.00 | 42.89 | 1.98 |
4335 | 8413 | 2.416836 | GCACTCGCCAACAGTGTCTATA | 60.417 | 50.000 | 0.00 | 0.00 | 42.89 | 1.31 |
4336 | 8414 | 3.179830 | CACTCGCCAACAGTGTCTATAC | 58.820 | 50.000 | 0.00 | 0.00 | 37.15 | 1.47 |
4401 | 8512 | 6.872020 | CCATTTCATGTGCAGAAGAAGAAATT | 59.128 | 34.615 | 1.66 | 0.00 | 33.42 | 1.82 |
4728 | 8839 | 1.597854 | CGTCCTGGCAGCACTTCAA | 60.598 | 57.895 | 9.56 | 0.00 | 0.00 | 2.69 |
4833 | 8944 | 3.328343 | TGGTAAGCTGCCTTTACCTACAA | 59.672 | 43.478 | 23.28 | 7.90 | 31.55 | 2.41 |
4848 | 8959 | 5.161943 | ACCTACAACAAGGATCAGGTTAC | 57.838 | 43.478 | 0.00 | 0.00 | 39.15 | 2.50 |
4849 | 8960 | 4.019591 | ACCTACAACAAGGATCAGGTTACC | 60.020 | 45.833 | 0.00 | 0.00 | 39.15 | 2.85 |
4850 | 8961 | 4.019681 | CCTACAACAAGGATCAGGTTACCA | 60.020 | 45.833 | 3.51 | 0.00 | 39.15 | 3.25 |
4851 | 8962 | 4.447138 | ACAACAAGGATCAGGTTACCAA | 57.553 | 40.909 | 3.51 | 0.00 | 0.00 | 3.67 |
4852 | 8963 | 4.798882 | ACAACAAGGATCAGGTTACCAAA | 58.201 | 39.130 | 3.51 | 0.00 | 0.00 | 3.28 |
4853 | 8964 | 5.393866 | ACAACAAGGATCAGGTTACCAAAT | 58.606 | 37.500 | 3.51 | 0.00 | 0.00 | 2.32 |
4854 | 8965 | 5.838521 | ACAACAAGGATCAGGTTACCAAATT | 59.161 | 36.000 | 3.51 | 0.00 | 0.00 | 1.82 |
4855 | 8966 | 7.007723 | ACAACAAGGATCAGGTTACCAAATTA | 58.992 | 34.615 | 3.51 | 0.00 | 0.00 | 1.40 |
4856 | 8967 | 7.673926 | ACAACAAGGATCAGGTTACCAAATTAT | 59.326 | 33.333 | 3.51 | 0.00 | 0.00 | 1.28 |
4857 | 8968 | 8.531146 | CAACAAGGATCAGGTTACCAAATTATT | 58.469 | 33.333 | 3.51 | 0.00 | 0.00 | 1.40 |
4858 | 8969 | 9.762381 | AACAAGGATCAGGTTACCAAATTATTA | 57.238 | 29.630 | 3.51 | 0.00 | 0.00 | 0.98 |
4859 | 8970 | 9.185680 | ACAAGGATCAGGTTACCAAATTATTAC | 57.814 | 33.333 | 3.51 | 0.00 | 0.00 | 1.89 |
4860 | 8971 | 8.630037 | CAAGGATCAGGTTACCAAATTATTACC | 58.370 | 37.037 | 3.51 | 0.00 | 0.00 | 2.85 |
4861 | 8972 | 7.878495 | AGGATCAGGTTACCAAATTATTACCA | 58.122 | 34.615 | 3.51 | 0.00 | 0.00 | 3.25 |
4862 | 8973 | 8.340757 | AGGATCAGGTTACCAAATTATTACCAA | 58.659 | 33.333 | 3.51 | 0.00 | 0.00 | 3.67 |
4863 | 8974 | 8.410912 | GGATCAGGTTACCAAATTATTACCAAC | 58.589 | 37.037 | 3.51 | 0.00 | 0.00 | 3.77 |
4864 | 8975 | 8.887264 | ATCAGGTTACCAAATTATTACCAACA | 57.113 | 30.769 | 3.51 | 0.00 | 0.00 | 3.33 |
4865 | 8976 | 8.113173 | TCAGGTTACCAAATTATTACCAACAC | 57.887 | 34.615 | 3.51 | 0.00 | 0.00 | 3.32 |
4866 | 8977 | 7.945664 | TCAGGTTACCAAATTATTACCAACACT | 59.054 | 33.333 | 3.51 | 0.00 | 0.00 | 3.55 |
4867 | 8978 | 8.241367 | CAGGTTACCAAATTATTACCAACACTC | 58.759 | 37.037 | 3.51 | 0.00 | 0.00 | 3.51 |
4868 | 8979 | 8.168058 | AGGTTACCAAATTATTACCAACACTCT | 58.832 | 33.333 | 3.51 | 0.00 | 0.00 | 3.24 |
4869 | 8980 | 8.799367 | GGTTACCAAATTATTACCAACACTCTT | 58.201 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
4873 | 8984 | 9.010029 | ACCAAATTATTACCAACACTCTTACTG | 57.990 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
4874 | 8985 | 9.226606 | CCAAATTATTACCAACACTCTTACTGA | 57.773 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
36 | 37 | 0.542938 | TCGATGGATAGGGCAGGGAG | 60.543 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
37 | 38 | 0.542938 | CTCGATGGATAGGGCAGGGA | 60.543 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
41 | 42 | 2.300152 | GTTGATCTCGATGGATAGGGCA | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
42 | 43 | 2.300152 | TGTTGATCTCGATGGATAGGGC | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
43 | 44 | 3.306364 | GGTGTTGATCTCGATGGATAGGG | 60.306 | 52.174 | 0.00 | 0.00 | 0.00 | 3.53 |
44 | 45 | 3.306364 | GGGTGTTGATCTCGATGGATAGG | 60.306 | 52.174 | 0.00 | 0.00 | 0.00 | 2.57 |
46 | 47 | 3.069586 | GTGGGTGTTGATCTCGATGGATA | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
47 | 48 | 2.118679 | TGGGTGTTGATCTCGATGGAT | 58.881 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
48 | 49 | 1.207089 | GTGGGTGTTGATCTCGATGGA | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
49 | 50 | 1.066215 | TGTGGGTGTTGATCTCGATGG | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
50 | 51 | 2.002586 | GTGTGGGTGTTGATCTCGATG | 58.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.84 |
51 | 52 | 1.404181 | CGTGTGGGTGTTGATCTCGAT | 60.404 | 52.381 | 0.00 | 0.00 | 0.00 | 3.59 |
52 | 53 | 0.038618 | CGTGTGGGTGTTGATCTCGA | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
53 | 54 | 1.014044 | CCGTGTGGGTGTTGATCTCG | 61.014 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
54 | 55 | 1.298859 | GCCGTGTGGGTGTTGATCTC | 61.299 | 60.000 | 0.00 | 0.00 | 38.44 | 2.75 |
55 | 56 | 1.302511 | GCCGTGTGGGTGTTGATCT | 60.303 | 57.895 | 0.00 | 0.00 | 38.44 | 2.75 |
56 | 57 | 2.332654 | GGCCGTGTGGGTGTTGATC | 61.333 | 63.158 | 0.00 | 0.00 | 38.44 | 2.92 |
57 | 58 | 2.282180 | GGCCGTGTGGGTGTTGAT | 60.282 | 61.111 | 0.00 | 0.00 | 38.44 | 2.57 |
58 | 59 | 3.798511 | TGGCCGTGTGGGTGTTGA | 61.799 | 61.111 | 0.00 | 0.00 | 38.44 | 3.18 |
59 | 60 | 3.591835 | GTGGCCGTGTGGGTGTTG | 61.592 | 66.667 | 0.00 | 0.00 | 38.44 | 3.33 |
60 | 61 | 4.116585 | TGTGGCCGTGTGGGTGTT | 62.117 | 61.111 | 0.00 | 0.00 | 38.44 | 3.32 |
61 | 62 | 4.868116 | GTGTGGCCGTGTGGGTGT | 62.868 | 66.667 | 0.00 | 0.00 | 38.44 | 4.16 |
62 | 63 | 4.866224 | TGTGTGGCCGTGTGGGTG | 62.866 | 66.667 | 0.00 | 0.00 | 38.44 | 4.61 |
63 | 64 | 4.868116 | GTGTGTGGCCGTGTGGGT | 62.868 | 66.667 | 0.00 | 0.00 | 38.44 | 4.51 |
64 | 65 | 4.866224 | TGTGTGTGGCCGTGTGGG | 62.866 | 66.667 | 0.00 | 0.00 | 39.58 | 4.61 |
65 | 66 | 3.582120 | GTGTGTGTGGCCGTGTGG | 61.582 | 66.667 | 0.00 | 0.00 | 38.77 | 4.17 |
66 | 67 | 2.821810 | TGTGTGTGTGGCCGTGTG | 60.822 | 61.111 | 0.00 | 0.00 | 0.00 | 3.82 |
67 | 68 | 2.822255 | GTGTGTGTGTGGCCGTGT | 60.822 | 61.111 | 0.00 | 0.00 | 0.00 | 4.49 |
71 | 72 | 1.832167 | AATGGGTGTGTGTGTGGCC | 60.832 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
73 | 74 | 1.397672 | TTCAATGGGTGTGTGTGTGG | 58.602 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
83 | 84 | 4.918588 | AGACGGTTTCTATTTCAATGGGT | 58.081 | 39.130 | 0.00 | 0.00 | 30.17 | 4.51 |
84 | 85 | 5.897377 | AAGACGGTTTCTATTTCAATGGG | 57.103 | 39.130 | 0.00 | 0.00 | 32.51 | 4.00 |
86 | 87 | 8.507249 | AGAGAAAAGACGGTTTCTATTTCAATG | 58.493 | 33.333 | 9.99 | 0.00 | 45.67 | 2.82 |
87 | 88 | 8.622948 | AGAGAAAAGACGGTTTCTATTTCAAT | 57.377 | 30.769 | 9.99 | 0.00 | 45.67 | 2.57 |
148 | 157 | 3.125829 | TCTTCAGCTTAATTTGCTCTGCG | 59.874 | 43.478 | 3.12 | 0.00 | 38.92 | 5.18 |
245 | 254 | 3.699894 | CCTCCTCGCAGTGCTGGT | 61.700 | 66.667 | 14.33 | 0.00 | 0.00 | 4.00 |
246 | 255 | 4.463879 | CCCTCCTCGCAGTGCTGG | 62.464 | 72.222 | 14.33 | 14.91 | 0.00 | 4.85 |
263 | 272 | 2.354259 | CTCAGGCTCAACATTCACTCC | 58.646 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
270 | 279 | 0.322277 | CACTGGCTCAGGCTCAACAT | 60.322 | 55.000 | 0.00 | 0.00 | 35.51 | 2.71 |
273 | 282 | 2.033141 | GCACTGGCTCAGGCTCAA | 59.967 | 61.111 | 0.00 | 0.00 | 35.51 | 3.02 |
347 | 364 | 8.110908 | AGGCAGGGAACTATACTCTAGTAATAG | 58.889 | 40.741 | 0.00 | 0.00 | 40.21 | 1.73 |
381 | 398 | 1.546029 | GGATTGGGAAAAGCTGGACAC | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
462 | 479 | 2.282147 | CTGCGACAGAGGAGCCAGAG | 62.282 | 65.000 | 1.18 | 0.00 | 32.44 | 3.35 |
463 | 480 | 2.283173 | TGCGACAGAGGAGCCAGA | 60.283 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
464 | 481 | 2.183811 | CTGCGACAGAGGAGCCAG | 59.816 | 66.667 | 1.18 | 0.00 | 32.44 | 4.85 |
502 | 519 | 1.801178 | CAAGAAGAAGTGCGAGGGAAC | 59.199 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
526 | 543 | 1.246737 | GGAAGGAAACAGGCCTGCTG | 61.247 | 60.000 | 33.06 | 11.22 | 35.50 | 4.41 |
527 | 544 | 1.075659 | GGAAGGAAACAGGCCTGCT | 59.924 | 57.895 | 33.06 | 19.23 | 35.50 | 4.24 |
528 | 545 | 2.335712 | CGGAAGGAAACAGGCCTGC | 61.336 | 63.158 | 33.06 | 16.45 | 35.50 | 4.85 |
529 | 546 | 3.987404 | CGGAAGGAAACAGGCCTG | 58.013 | 61.111 | 31.60 | 31.60 | 35.50 | 4.85 |
694 | 715 | 2.451493 | TGAACTTGGGGCAGGGGA | 60.451 | 61.111 | 0.00 | 0.00 | 0.00 | 4.81 |
696 | 717 | 2.283173 | GGTGAACTTGGGGCAGGG | 60.283 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
697 | 718 | 1.303643 | GAGGTGAACTTGGGGCAGG | 60.304 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
699 | 720 | 2.843545 | GGAGGTGAACTTGGGGCA | 59.156 | 61.111 | 0.00 | 0.00 | 0.00 | 5.36 |
700 | 721 | 2.359975 | CGGAGGTGAACTTGGGGC | 60.360 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
731 | 782 | 2.280592 | AACCGCGACTGTTGGGAC | 60.281 | 61.111 | 8.23 | 0.00 | 0.00 | 4.46 |
740 | 791 | 1.703438 | TAGAGAGCTCGAACCGCGAC | 61.703 | 60.000 | 8.23 | 0.00 | 45.59 | 5.19 |
743 | 794 | 1.064458 | GGTAGAGAGCTCGAACCGC | 59.936 | 63.158 | 16.18 | 4.11 | 33.23 | 5.68 |
754 | 805 | 5.070580 | GGGGTAGTAAGTACGTAGGTAGAGA | 59.929 | 48.000 | 0.00 | 0.00 | 31.59 | 3.10 |
761 | 812 | 3.557595 | CGTCTGGGGTAGTAAGTACGTAG | 59.442 | 52.174 | 0.00 | 0.00 | 31.59 | 3.51 |
1284 | 1380 | 6.019559 | CGGCCTTGAAAGAAGAAAAGAAAAAG | 60.020 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
1285 | 1381 | 5.810074 | CGGCCTTGAAAGAAGAAAAGAAAAA | 59.190 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
1382 | 1490 | 3.784511 | ACTCATTCCATCAGCCCATAG | 57.215 | 47.619 | 0.00 | 0.00 | 0.00 | 2.23 |
1446 | 1560 | 7.530861 | GTGACAAAACTAAAAGCAGTATTCTCG | 59.469 | 37.037 | 0.00 | 0.00 | 0.00 | 4.04 |
1480 | 1596 | 1.767759 | ATATGTTGGGGCTTGCTCAC | 58.232 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1506 | 1622 | 2.668457 | ACGAGCATTAACAAGAAGAGCG | 59.332 | 45.455 | 0.00 | 0.00 | 0.00 | 5.03 |
1543 | 1659 | 3.616317 | GCCCATCGCCAGTTAAAAACAAT | 60.616 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
1558 | 1674 | 0.882042 | GTACTGCCATCAGCCCATCG | 60.882 | 60.000 | 0.00 | 0.00 | 44.10 | 3.84 |
1570 | 1686 | 2.558359 | AGCAAAGTGAAATGGTACTGCC | 59.442 | 45.455 | 0.00 | 0.00 | 37.90 | 4.85 |
1571 | 1687 | 3.253188 | TGAGCAAAGTGAAATGGTACTGC | 59.747 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
1600 | 1716 | 4.465886 | ACCACAACACAAATAAGCACCTA | 58.534 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
1603 | 1719 | 3.296628 | CGACCACAACACAAATAAGCAC | 58.703 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1615 | 1731 | 0.865769 | GTGTCATCACCGACCACAAC | 59.134 | 55.000 | 0.00 | 0.00 | 38.51 | 3.32 |
1616 | 1732 | 0.466124 | TGTGTCATCACCGACCACAA | 59.534 | 50.000 | 0.00 | 0.00 | 43.26 | 3.33 |
1617 | 1733 | 0.684535 | ATGTGTCATCACCGACCACA | 59.315 | 50.000 | 0.00 | 0.00 | 43.26 | 4.17 |
1618 | 1734 | 1.078709 | CATGTGTCATCACCGACCAC | 58.921 | 55.000 | 0.00 | 0.00 | 43.26 | 4.16 |
1619 | 1735 | 0.972883 | TCATGTGTCATCACCGACCA | 59.027 | 50.000 | 0.00 | 0.00 | 43.26 | 4.02 |
1620 | 1736 | 1.337728 | TGTCATGTGTCATCACCGACC | 60.338 | 52.381 | 12.18 | 0.00 | 43.26 | 4.79 |
1621 | 1737 | 1.995484 | CTGTCATGTGTCATCACCGAC | 59.005 | 52.381 | 0.00 | 9.50 | 43.26 | 4.79 |
1622 | 1738 | 1.618343 | ACTGTCATGTGTCATCACCGA | 59.382 | 47.619 | 0.00 | 0.00 | 43.26 | 4.69 |
1623 | 1739 | 2.084610 | ACTGTCATGTGTCATCACCG | 57.915 | 50.000 | 0.00 | 0.00 | 43.26 | 4.94 |
1628 | 1744 | 5.412594 | GTGAAATGGTACTGTCATGTGTCAT | 59.587 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1665 | 1782 | 1.450025 | GCCACAACTAAGCACCTACC | 58.550 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1685 | 1802 | 7.362142 | CCAGATAATCTCAAAGGATGATGCATG | 60.362 | 40.741 | 2.46 | 0.00 | 37.44 | 4.06 |
1718 | 1839 | 5.006068 | CGTCACAGTCATCAACCAATCTATG | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.23 |
1762 | 1895 | 4.724399 | ACACACCATGAACCACATCTTAA | 58.276 | 39.130 | 0.00 | 0.00 | 37.07 | 1.85 |
1811 | 1944 | 9.438291 | CTAAACAAAGAAGACACATTAACAGTG | 57.562 | 33.333 | 8.02 | 8.02 | 42.56 | 3.66 |
1895 | 2028 | 8.818057 | GCTAATAACACAATCTCTCAAATACGT | 58.182 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
1896 | 2029 | 8.276325 | GGCTAATAACACAATCTCTCAAATACG | 58.724 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
1897 | 2030 | 8.560374 | GGGCTAATAACACAATCTCTCAAATAC | 58.440 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
1898 | 2031 | 8.271458 | TGGGCTAATAACACAATCTCTCAAATA | 58.729 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1921 | 2054 | 0.545071 | AAGGGGGTGCTTTCAATGGG | 60.545 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1935 | 2068 | 8.953313 | CAAGTTACAATTTAGGTAAGTAAGGGG | 58.047 | 37.037 | 0.00 | 0.00 | 34.23 | 4.79 |
2003 | 2140 | 3.348119 | TGTACAGTTTTGTGGTTGAGCA | 58.652 | 40.909 | 0.00 | 0.00 | 38.23 | 4.26 |
2029 | 2170 | 8.311650 | TCTTCTTCTTTCTTGCAGTTATGTAC | 57.688 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
2056 | 2198 | 1.536709 | GCAGTTGTGTTCTTTGCCCTG | 60.537 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
2128 | 2328 | 6.153680 | CCAGTTAGTAAGACCTCAGAAGACAT | 59.846 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
2132 | 2332 | 4.464597 | AGCCAGTTAGTAAGACCTCAGAAG | 59.535 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
2271 | 2471 | 6.430000 | TCTGGCACTTTCTTGTACTATTTTCC | 59.570 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
2313 | 2519 | 6.373779 | CAGCCTGTTGTTAACTTCATAACAG | 58.626 | 40.000 | 20.69 | 20.69 | 44.21 | 3.16 |
2349 | 2555 | 8.570068 | AAAGCAAATAAATTCTTCCAATGCAT | 57.430 | 26.923 | 0.00 | 0.00 | 33.89 | 3.96 |
2350 | 2556 | 7.982761 | AAAGCAAATAAATTCTTCCAATGCA | 57.017 | 28.000 | 0.00 | 0.00 | 33.89 | 3.96 |
2540 | 2755 | 6.348498 | CACATGACAATCTTGTGTCCCTATA | 58.652 | 40.000 | 13.81 | 0.00 | 46.13 | 1.31 |
2761 | 2988 | 7.030165 | AGTATCAACTGATGTTTCACTACGAG | 58.970 | 38.462 | 2.36 | 0.00 | 36.05 | 4.18 |
2776 | 3003 | 7.441157 | TGACTTGTGGAAGTAAAGTATCAACTG | 59.559 | 37.037 | 0.00 | 0.00 | 42.80 | 3.16 |
2792 | 3019 | 5.071788 | AGGAATCAGTTAGTTGACTTGTGGA | 59.928 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2793 | 3020 | 5.308825 | AGGAATCAGTTAGTTGACTTGTGG | 58.691 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
2794 | 3021 | 6.483307 | TGAAGGAATCAGTTAGTTGACTTGTG | 59.517 | 38.462 | 0.00 | 0.00 | 33.04 | 3.33 |
2795 | 3022 | 6.591935 | TGAAGGAATCAGTTAGTTGACTTGT | 58.408 | 36.000 | 0.00 | 0.00 | 33.04 | 3.16 |
2846 | 3078 | 5.755375 | TCAAGAAGTTCACAGAAGTTGCTAG | 59.245 | 40.000 | 5.50 | 0.00 | 0.00 | 3.42 |
2936 | 3168 | 8.630054 | AGTGTACCATAAAAGCACAATCTTTA | 57.370 | 30.769 | 0.00 | 0.00 | 35.41 | 1.85 |
3007 | 3243 | 3.688272 | CAGAAACTGAGCAAACTGTGTG | 58.312 | 45.455 | 0.00 | 0.00 | 32.44 | 3.82 |
3083 | 3346 | 8.411318 | AGAATTGAAATGTCACTTGAAACAAC | 57.589 | 30.769 | 0.00 | 0.00 | 31.90 | 3.32 |
3088 | 3351 | 9.304731 | CTGAAAAGAATTGAAATGTCACTTGAA | 57.695 | 29.630 | 0.00 | 0.00 | 31.90 | 2.69 |
3107 | 3375 | 3.690460 | ACCAAGCCTCATACCTGAAAAG | 58.310 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
3161 | 3429 | 2.743752 | CGCTGTGATCTTGTGCCCG | 61.744 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
3164 | 3432 | 1.975363 | GCCTCGCTGTGATCTTGTGC | 61.975 | 60.000 | 0.00 | 0.00 | 0.00 | 4.57 |
3548 | 3816 | 2.725641 | CCATACATCGGACCGCGA | 59.274 | 61.111 | 8.23 | 0.00 | 0.00 | 5.87 |
3685 | 7752 | 6.357367 | ACTGTCTACTGAAGAAATGGTGTTT | 58.643 | 36.000 | 0.00 | 0.00 | 35.47 | 2.83 |
3686 | 7753 | 5.930135 | ACTGTCTACTGAAGAAATGGTGTT | 58.070 | 37.500 | 0.00 | 0.00 | 35.47 | 3.32 |
3687 | 7754 | 5.552870 | ACTGTCTACTGAAGAAATGGTGT | 57.447 | 39.130 | 0.00 | 0.00 | 35.47 | 4.16 |
3688 | 7755 | 9.653287 | TTTATACTGTCTACTGAAGAAATGGTG | 57.347 | 33.333 | 0.00 | 0.00 | 35.47 | 4.17 |
3693 | 7760 | 9.485206 | GGTGTTTTATACTGTCTACTGAAGAAA | 57.515 | 33.333 | 0.00 | 0.00 | 35.47 | 2.52 |
3694 | 7761 | 8.644216 | TGGTGTTTTATACTGTCTACTGAAGAA | 58.356 | 33.333 | 0.00 | 0.00 | 35.47 | 2.52 |
3695 | 7762 | 8.185506 | TGGTGTTTTATACTGTCTACTGAAGA | 57.814 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
3696 | 7763 | 9.436957 | AATGGTGTTTTATACTGTCTACTGAAG | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3697 | 7764 | 9.787435 | AAATGGTGTTTTATACTGTCTACTGAA | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
3698 | 7765 | 9.431887 | GAAATGGTGTTTTATACTGTCTACTGA | 57.568 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3699 | 7766 | 9.436957 | AGAAATGGTGTTTTATACTGTCTACTG | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
3703 | 7770 | 8.918202 | TGAAGAAATGGTGTTTTATACTGTCT | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
3704 | 7771 | 8.784043 | ACTGAAGAAATGGTGTTTTATACTGTC | 58.216 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
3705 | 7772 | 8.691661 | ACTGAAGAAATGGTGTTTTATACTGT | 57.308 | 30.769 | 0.00 | 0.00 | 0.00 | 3.55 |
3710 | 7777 | 8.918202 | TGTCTACTGAAGAAATGGTGTTTTAT | 57.082 | 30.769 | 0.00 | 0.00 | 35.47 | 1.40 |
3711 | 7778 | 7.990886 | ACTGTCTACTGAAGAAATGGTGTTTTA | 59.009 | 33.333 | 0.00 | 0.00 | 35.47 | 1.52 |
3712 | 7779 | 6.828785 | ACTGTCTACTGAAGAAATGGTGTTTT | 59.171 | 34.615 | 0.00 | 0.00 | 35.47 | 2.43 |
3713 | 7780 | 6.357367 | ACTGTCTACTGAAGAAATGGTGTTT | 58.643 | 36.000 | 0.00 | 0.00 | 35.47 | 2.83 |
3714 | 7781 | 5.930135 | ACTGTCTACTGAAGAAATGGTGTT | 58.070 | 37.500 | 0.00 | 0.00 | 35.47 | 3.32 |
3715 | 7782 | 5.552870 | ACTGTCTACTGAAGAAATGGTGT | 57.447 | 39.130 | 0.00 | 0.00 | 35.47 | 4.16 |
3716 | 7783 | 9.653287 | TTTATACTGTCTACTGAAGAAATGGTG | 57.347 | 33.333 | 0.00 | 0.00 | 35.47 | 4.17 |
3721 | 7788 | 9.485206 | GGTGTTTTATACTGTCTACTGAAGAAA | 57.515 | 33.333 | 0.00 | 0.00 | 35.47 | 2.52 |
3722 | 7789 | 8.644216 | TGGTGTTTTATACTGTCTACTGAAGAA | 58.356 | 33.333 | 0.00 | 0.00 | 35.47 | 2.52 |
3723 | 7790 | 8.185506 | TGGTGTTTTATACTGTCTACTGAAGA | 57.814 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
3724 | 7791 | 9.436957 | AATGGTGTTTTATACTGTCTACTGAAG | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
3725 | 7792 | 9.787435 | AAATGGTGTTTTATACTGTCTACTGAA | 57.213 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
3726 | 7793 | 9.431887 | GAAATGGTGTTTTATACTGTCTACTGA | 57.568 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3727 | 7794 | 9.436957 | AGAAATGGTGTTTTATACTGTCTACTG | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
3731 | 7798 | 8.918202 | TGAAGAAATGGTGTTTTATACTGTCT | 57.082 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
3732 | 7799 | 7.750903 | GCTGAAGAAATGGTGTTTTATACTGTC | 59.249 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3733 | 7800 | 7.230510 | TGCTGAAGAAATGGTGTTTTATACTGT | 59.769 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
3734 | 7801 | 7.592938 | TGCTGAAGAAATGGTGTTTTATACTG | 58.407 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
3735 | 7802 | 7.665559 | TCTGCTGAAGAAATGGTGTTTTATACT | 59.334 | 33.333 | 0.00 | 0.00 | 29.54 | 2.12 |
3736 | 7803 | 7.750903 | GTCTGCTGAAGAAATGGTGTTTTATAC | 59.249 | 37.037 | 0.00 | 0.00 | 36.40 | 1.47 |
3737 | 7804 | 7.446931 | TGTCTGCTGAAGAAATGGTGTTTTATA | 59.553 | 33.333 | 0.00 | 0.00 | 36.40 | 0.98 |
3738 | 7805 | 6.265196 | TGTCTGCTGAAGAAATGGTGTTTTAT | 59.735 | 34.615 | 0.00 | 0.00 | 36.40 | 1.40 |
3739 | 7806 | 5.592282 | TGTCTGCTGAAGAAATGGTGTTTTA | 59.408 | 36.000 | 0.00 | 0.00 | 36.40 | 1.52 |
3740 | 7807 | 4.402155 | TGTCTGCTGAAGAAATGGTGTTTT | 59.598 | 37.500 | 0.00 | 0.00 | 36.40 | 2.43 |
3741 | 7808 | 3.953612 | TGTCTGCTGAAGAAATGGTGTTT | 59.046 | 39.130 | 0.00 | 0.00 | 36.40 | 2.83 |
3742 | 7809 | 3.554934 | TGTCTGCTGAAGAAATGGTGTT | 58.445 | 40.909 | 0.00 | 0.00 | 36.40 | 3.32 |
3743 | 7810 | 3.144506 | CTGTCTGCTGAAGAAATGGTGT | 58.855 | 45.455 | 0.00 | 0.00 | 36.40 | 4.16 |
3744 | 7811 | 3.144506 | ACTGTCTGCTGAAGAAATGGTG | 58.855 | 45.455 | 0.00 | 0.00 | 36.40 | 4.17 |
3745 | 7812 | 3.498774 | ACTGTCTGCTGAAGAAATGGT | 57.501 | 42.857 | 0.00 | 0.00 | 36.40 | 3.55 |
3746 | 7813 | 5.236047 | GCTATACTGTCTGCTGAAGAAATGG | 59.764 | 44.000 | 0.00 | 0.50 | 36.40 | 3.16 |
3747 | 7814 | 6.047870 | AGCTATACTGTCTGCTGAAGAAATG | 58.952 | 40.000 | 0.00 | 0.00 | 36.40 | 2.32 |
3748 | 7815 | 6.098124 | AGAGCTATACTGTCTGCTGAAGAAAT | 59.902 | 38.462 | 6.80 | 0.00 | 36.40 | 2.17 |
3749 | 7816 | 5.420421 | AGAGCTATACTGTCTGCTGAAGAAA | 59.580 | 40.000 | 6.80 | 0.00 | 36.40 | 2.52 |
3750 | 7817 | 4.952957 | AGAGCTATACTGTCTGCTGAAGAA | 59.047 | 41.667 | 6.80 | 0.00 | 36.40 | 2.52 |
3751 | 7818 | 4.531854 | AGAGCTATACTGTCTGCTGAAGA | 58.468 | 43.478 | 6.80 | 0.00 | 35.76 | 2.87 |
3752 | 7819 | 4.916983 | AGAGCTATACTGTCTGCTGAAG | 57.083 | 45.455 | 6.80 | 0.00 | 35.76 | 3.02 |
3753 | 7820 | 7.454225 | TCTATAGAGCTATACTGTCTGCTGAA | 58.546 | 38.462 | 0.00 | 0.00 | 35.76 | 3.02 |
3754 | 7821 | 7.010339 | TCTATAGAGCTATACTGTCTGCTGA | 57.990 | 40.000 | 0.00 | 0.00 | 35.76 | 4.26 |
3755 | 7822 | 7.626240 | GCTTCTATAGAGCTATACTGTCTGCTG | 60.626 | 44.444 | 13.67 | 0.00 | 35.76 | 4.41 |
3756 | 7823 | 6.374333 | GCTTCTATAGAGCTATACTGTCTGCT | 59.626 | 42.308 | 13.67 | 2.55 | 38.59 | 4.24 |
3757 | 7824 | 6.404293 | GGCTTCTATAGAGCTATACTGTCTGC | 60.404 | 46.154 | 17.89 | 0.00 | 0.00 | 4.26 |
3758 | 7825 | 6.884295 | AGGCTTCTATAGAGCTATACTGTCTG | 59.116 | 42.308 | 17.89 | 0.00 | 0.00 | 3.51 |
3759 | 7826 | 7.027874 | AGGCTTCTATAGAGCTATACTGTCT | 57.972 | 40.000 | 17.89 | 6.75 | 0.00 | 3.41 |
3760 | 7827 | 8.044908 | AGTAGGCTTCTATAGAGCTATACTGTC | 58.955 | 40.741 | 22.75 | 10.19 | 33.39 | 3.51 |
3761 | 7828 | 7.827236 | CAGTAGGCTTCTATAGAGCTATACTGT | 59.173 | 40.741 | 28.58 | 16.53 | 40.10 | 3.55 |
3762 | 7829 | 8.044309 | TCAGTAGGCTTCTATAGAGCTATACTG | 58.956 | 40.741 | 29.47 | 29.47 | 42.69 | 2.74 |
3763 | 7830 | 8.153221 | TCAGTAGGCTTCTATAGAGCTATACT | 57.847 | 38.462 | 20.64 | 20.64 | 34.20 | 2.12 |
3764 | 7831 | 8.795842 | TTCAGTAGGCTTCTATAGAGCTATAC | 57.204 | 38.462 | 17.89 | 18.32 | 0.00 | 1.47 |
3765 | 7832 | 9.621629 | GATTCAGTAGGCTTCTATAGAGCTATA | 57.378 | 37.037 | 17.89 | 0.00 | 0.00 | 1.31 |
3766 | 7833 | 8.336235 | AGATTCAGTAGGCTTCTATAGAGCTAT | 58.664 | 37.037 | 17.89 | 12.23 | 0.00 | 2.97 |
3767 | 7834 | 7.609918 | CAGATTCAGTAGGCTTCTATAGAGCTA | 59.390 | 40.741 | 17.89 | 9.69 | 0.00 | 3.32 |
3768 | 7835 | 6.434028 | CAGATTCAGTAGGCTTCTATAGAGCT | 59.566 | 42.308 | 17.89 | 0.00 | 0.00 | 4.09 |
3776 | 7843 | 7.235193 | ACATCATATCAGATTCAGTAGGCTTCT | 59.765 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
3883 | 7953 | 1.635663 | CTCCTGCCGGCTAAACAACG | 61.636 | 60.000 | 29.70 | 5.68 | 0.00 | 4.10 |
3896 | 7966 | 1.194781 | TCTCAGACCCCAACTCCTGC | 61.195 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3975 | 8045 | 4.632251 | CACTCGAGCTAAACTACTCTCAGA | 59.368 | 45.833 | 13.61 | 0.00 | 0.00 | 3.27 |
4010 | 8080 | 6.292923 | TCTCAAACTATTCCCACGAGAAAAA | 58.707 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
4041 | 8112 | 9.502035 | AGGCTAAGGGCAAATACTGTATATATA | 57.498 | 33.333 | 0.00 | 0.00 | 44.01 | 0.86 |
4092 | 8166 | 3.365265 | GCAAACCCTGGGTCTGCG | 61.365 | 66.667 | 27.11 | 12.99 | 39.95 | 5.18 |
4099 | 8173 | 3.492482 | CCTTGTAAAACTGCAAACCCTGG | 60.492 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
4145 | 8219 | 5.233050 | CACTGTAAAACACTGAGTCTCACAG | 59.767 | 44.000 | 0.00 | 5.01 | 40.68 | 3.66 |
4149 | 8223 | 7.766219 | TTTACACTGTAAAACACTGAGTCTC | 57.234 | 36.000 | 11.27 | 0.00 | 33.28 | 3.36 |
4194 | 8268 | 4.081420 | AGGAGAGTTTGTGAGCGACATAAT | 60.081 | 41.667 | 0.00 | 0.00 | 33.40 | 1.28 |
4201 | 8275 | 1.151668 | CCAAGGAGAGTTTGTGAGCG | 58.848 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4202 | 8276 | 2.037772 | TCTCCAAGGAGAGTTTGTGAGC | 59.962 | 50.000 | 14.66 | 0.00 | 45.26 | 4.26 |
4210 | 8284 | 9.270534 | GGCTAACCATATTTCTCCAAGGAGAGT | 62.271 | 44.444 | 17.58 | 13.28 | 43.10 | 3.24 |
4211 | 8285 | 6.966095 | GGCTAACCATATTTCTCCAAGGAGAG | 60.966 | 46.154 | 17.58 | 8.69 | 43.10 | 3.20 |
4212 | 8286 | 5.163195 | GGCTAACCATATTTCTCCAAGGAGA | 60.163 | 44.000 | 14.66 | 14.66 | 41.77 | 3.71 |
4213 | 8287 | 5.066593 | GGCTAACCATATTTCTCCAAGGAG | 58.933 | 45.833 | 9.90 | 9.90 | 38.61 | 3.69 |
4214 | 8288 | 4.476846 | TGGCTAACCATATTTCTCCAAGGA | 59.523 | 41.667 | 0.00 | 0.00 | 42.67 | 3.36 |
4215 | 8289 | 4.792068 | TGGCTAACCATATTTCTCCAAGG | 58.208 | 43.478 | 0.00 | 0.00 | 42.67 | 3.61 |
4244 | 8318 | 5.584251 | GGCTGGAAACTTTGTTGATTTTTCA | 59.416 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4257 | 8331 | 5.418840 | CCACAGTTATATTGGCTGGAAACTT | 59.581 | 40.000 | 0.00 | 0.00 | 34.79 | 2.66 |
4277 | 8351 | 6.037830 | GCTAACTATAATTCTTTTCCGCCACA | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
4278 | 8352 | 6.037830 | TGCTAACTATAATTCTTTTCCGCCAC | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 5.01 |
4280 | 8354 | 6.613755 | TGCTAACTATAATTCTTTTCCGCC | 57.386 | 37.500 | 0.00 | 0.00 | 0.00 | 6.13 |
4295 | 8369 | 5.439721 | AGTGCAAATGATGGATGCTAACTA | 58.560 | 37.500 | 0.00 | 0.00 | 40.66 | 2.24 |
4305 | 8382 | 0.527113 | TTGGCGAGTGCAAATGATGG | 59.473 | 50.000 | 0.00 | 0.00 | 45.35 | 3.51 |
4334 | 8412 | 2.369203 | TGTGTTTGAAGATCACGGGGTA | 59.631 | 45.455 | 0.00 | 0.00 | 35.20 | 3.69 |
4335 | 8413 | 1.142060 | TGTGTTTGAAGATCACGGGGT | 59.858 | 47.619 | 0.00 | 0.00 | 35.20 | 4.95 |
4336 | 8414 | 1.535462 | GTGTGTTTGAAGATCACGGGG | 59.465 | 52.381 | 0.00 | 0.00 | 35.20 | 5.73 |
4387 | 8498 | 1.135286 | CCGGGCAATTTCTTCTTCTGC | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
4401 | 8512 | 4.329545 | GACAGTTCCTGCCGGGCA | 62.330 | 66.667 | 22.39 | 22.39 | 34.37 | 5.36 |
4534 | 8645 | 0.179073 | CCACCGGAGAGCATTTCGAT | 60.179 | 55.000 | 9.46 | 0.00 | 0.00 | 3.59 |
4699 | 8810 | 4.337060 | CAGGACGACACCGACGCA | 62.337 | 66.667 | 0.00 | 0.00 | 39.50 | 5.24 |
4728 | 8839 | 0.907230 | GAGGTTCCTCTCACTGGCCT | 60.907 | 60.000 | 3.32 | 0.00 | 34.13 | 5.19 |
4833 | 8944 | 9.185680 | GTAATAATTTGGTAACCTGATCCTTGT | 57.814 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
4848 | 8959 | 9.226606 | TCAGTAAGAGTGTTGGTAATAATTTGG | 57.773 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.