Multiple sequence alignment - TraesCS3B01G373400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G373400 chr3B 100.000 6999 0 0 1 6999 586420966 586427964 0.000000e+00 12925.0
1 TraesCS3B01G373400 chr3B 92.141 2163 137 19 2820 4963 3811864 3814012 0.000000e+00 3022.0
2 TraesCS3B01G373400 chr3B 90.147 2172 164 29 2825 4964 187537624 187535471 0.000000e+00 2780.0
3 TraesCS3B01G373400 chr3B 92.802 1417 90 5 3557 4962 685193714 685192299 0.000000e+00 2041.0
4 TraesCS3B01G373400 chr3B 86.389 1080 104 23 970 2023 586340954 586342016 0.000000e+00 1140.0
5 TraesCS3B01G373400 chr3B 94.762 420 22 0 5598 6017 586342537 586342956 0.000000e+00 654.0
6 TraesCS3B01G373400 chr3B 88.995 418 44 2 2020 2437 586342060 586342475 3.740000e-142 516.0
7 TraesCS3B01G373400 chr3B 89.531 277 28 1 6723 6999 258097270 258097545 4.020000e-92 350.0
8 TraesCS3B01G373400 chr3B 92.593 54 4 0 5482 5535 755324790 755324737 2.090000e-10 78.7
9 TraesCS3B01G373400 chr3B 100.000 36 0 0 2822 2857 648732465 648732500 4.530000e-07 67.6
10 TraesCS3B01G373400 chr3B 91.489 47 3 1 4920 4965 188874452 188874406 5.860000e-06 63.9
11 TraesCS3B01G373400 chr3B 86.792 53 7 0 2627 2679 665987376 665987324 7.580000e-05 60.2
12 TraesCS3B01G373400 chr3B 90.698 43 3 1 4920 4961 759027832 759027874 1.000000e-03 56.5
13 TraesCS3B01G373400 chr4B 95.463 2138 92 5 2825 4959 69921304 69919169 0.000000e+00 3406.0
14 TraesCS3B01G373400 chr4B 81.150 626 89 16 13 622 118658174 118658786 6.350000e-130 475.0
15 TraesCS3B01G373400 chr5B 95.285 2142 92 8 2825 4963 588877582 588879717 0.000000e+00 3387.0
16 TraesCS3B01G373400 chr1B 95.529 2080 87 6 2820 4897 611704311 611706386 0.000000e+00 3321.0
17 TraesCS3B01G373400 chr1B 93.858 2149 109 14 2817 4952 517079351 517081489 0.000000e+00 3216.0
18 TraesCS3B01G373400 chr1B 94.627 2066 92 11 2862 4926 35006201 35004154 0.000000e+00 3182.0
19 TraesCS3B01G373400 chr1B 83.282 652 67 25 1395 2019 349839405 349840041 4.740000e-156 562.0
20 TraesCS3B01G373400 chr1B 84.557 395 44 8 2073 2456 349840138 349840526 6.630000e-100 375.0
21 TraesCS3B01G373400 chr1B 87.156 327 36 3 995 1318 349838132 349838455 3.990000e-97 366.0
22 TraesCS3B01G373400 chr1B 92.222 180 14 0 5808 5987 349840966 349841145 9.010000e-64 255.0
23 TraesCS3B01G373400 chr7B 94.208 2141 118 6 2823 4961 479897382 479899518 0.000000e+00 3262.0
24 TraesCS3B01G373400 chr7B 94.115 2141 120 6 2823 4961 479874171 479876307 0.000000e+00 3251.0
25 TraesCS3B01G373400 chr7B 93.409 2124 121 10 2852 4961 362389358 362387240 0.000000e+00 3129.0
26 TraesCS3B01G373400 chr7B 87.719 285 35 0 6715 6999 128080261 128080545 4.050000e-87 333.0
27 TraesCS3B01G373400 chr7B 82.906 234 33 3 1095 1324 418192826 418192596 3.310000e-48 204.0
28 TraesCS3B01G373400 chr6B 94.076 2144 117 10 2822 4961 63411058 63413195 0.000000e+00 3247.0
29 TraesCS3B01G373400 chr6B 90.942 276 24 1 6724 6999 360384982 360384708 3.080000e-98 370.0
30 TraesCS3B01G373400 chr3A 92.490 2157 128 16 2825 4963 10664258 10662118 0.000000e+00 3055.0
31 TraesCS3B01G373400 chr3A 90.333 2162 160 26 2823 4967 106492598 106490469 0.000000e+00 2789.0
32 TraesCS3B01G373400 chr3A 89.763 1182 69 20 1659 2818 588725223 588726374 0.000000e+00 1465.0
33 TraesCS3B01G373400 chr3A 91.559 853 36 17 840 1688 588724369 588725189 0.000000e+00 1144.0
34 TraesCS3B01G373400 chr3A 91.558 841 54 13 5476 6304 588727882 588728717 0.000000e+00 1144.0
35 TraesCS3B01G373400 chr3A 86.280 1086 106 26 970 2023 588657676 588658750 0.000000e+00 1140.0
36 TraesCS3B01G373400 chr3A 89.155 627 42 13 1 614 588689802 588690415 0.000000e+00 758.0
37 TraesCS3B01G373400 chr3A 93.990 416 25 0 5602 6017 588659291 588659706 1.280000e-176 630.0
38 TraesCS3B01G373400 chr3A 93.842 341 16 4 4999 5336 588727495 588727833 6.260000e-140 508.0
39 TraesCS3B01G373400 chr3A 84.989 473 60 8 6252 6721 588728706 588729170 2.960000e-128 470.0
40 TraesCS3B01G373400 chr3A 89.863 365 36 1 2065 2429 588658841 588659204 1.060000e-127 468.0
41 TraesCS3B01G373400 chr3A 95.302 149 7 0 662 810 588724221 588724369 3.260000e-58 237.0
42 TraesCS3B01G373400 chr3A 90.278 72 6 1 621 692 588690722 588690792 7.480000e-15 93.5
43 TraesCS3B01G373400 chr7A 89.444 2160 176 30 2823 4962 183386254 183384127 0.000000e+00 2678.0
44 TraesCS3B01G373400 chr7A 88.560 2159 196 34 2825 4962 452626683 452624555 0.000000e+00 2571.0
45 TraesCS3B01G373400 chr7A 88.992 1826 159 23 3152 4961 80545062 80546861 0.000000e+00 2220.0
46 TraesCS3B01G373400 chr5A 90.389 1852 157 9 3125 4961 560045580 560043735 0.000000e+00 2414.0
47 TraesCS3B01G373400 chr3D 89.140 1768 136 32 4961 6721 446911994 446913712 0.000000e+00 2150.0
48 TraesCS3B01G373400 chr3D 89.501 1524 86 35 1327 2827 446910524 446911996 0.000000e+00 1860.0
49 TraesCS3B01G373400 chr3D 91.617 1348 54 22 1 1329 446909124 446910431 0.000000e+00 1808.0
50 TraesCS3B01G373400 chr3D 86.648 1071 99 24 970 2023 446854218 446855261 0.000000e+00 1146.0
51 TraesCS3B01G373400 chr3D 94.048 420 25 0 5598 6017 446855798 446856217 7.660000e-179 638.0
52 TraesCS3B01G373400 chr3D 82.656 640 80 15 2 625 550271244 550271868 7.990000e-149 538.0
53 TraesCS3B01G373400 chr3D 87.002 477 51 9 2013 2487 446855303 446855770 1.730000e-145 527.0
54 TraesCS3B01G373400 chr3D 81.866 568 70 17 80 628 267220932 267220379 1.380000e-121 448.0
55 TraesCS3B01G373400 chr3D 88.129 278 31 2 6724 6999 584153549 584153272 5.230000e-86 329.0
56 TraesCS3B01G373400 chr1D 84.227 653 61 29 1394 2019 261881266 261880629 1.300000e-166 597.0
57 TraesCS3B01G373400 chr1D 85.635 362 44 7 2073 2427 261880533 261880173 2.380000e-99 374.0
58 TraesCS3B01G373400 chr1D 89.928 278 26 2 6724 6999 478182873 478183150 2.400000e-94 357.0
59 TraesCS3B01G373400 chr1D 89.247 279 27 1 6724 6999 353561677 353561955 5.200000e-91 346.0
60 TraesCS3B01G373400 chr1D 86.063 287 35 5 6717 6999 391958915 391958630 3.170000e-78 303.0
61 TraesCS3B01G373400 chr1D 90.556 180 17 0 5808 5987 261879713 261879534 9.070000e-59 239.0
62 TraesCS3B01G373400 chr1A 83.975 649 69 25 1394 2019 337985535 337986171 2.170000e-164 590.0
63 TraesCS3B01G373400 chr1A 84.932 365 41 5 2073 2427 337986268 337986628 2.400000e-94 357.0
64 TraesCS3B01G373400 chr1A 86.068 323 39 3 995 1314 337981718 337982037 6.720000e-90 342.0
65 TraesCS3B01G373400 chr1A 86.525 282 36 1 6718 6999 10121159 10121438 6.820000e-80 309.0
66 TraesCS3B01G373400 chr1A 89.952 209 21 0 5603 5811 337986732 337986940 3.220000e-68 270.0
67 TraesCS3B01G373400 chr1A 87.845 181 15 3 5808 5987 337987267 337987441 9.200000e-49 206.0
68 TraesCS3B01G373400 chr2D 82.903 620 80 12 1 606 521409402 521408795 1.030000e-147 534.0
69 TraesCS3B01G373400 chr2D 81.522 644 81 21 1 628 209119248 209118627 4.880000e-136 496.0
70 TraesCS3B01G373400 chr4D 82.445 638 84 16 1 622 83849452 83850077 3.720000e-147 532.0
71 TraesCS3B01G373400 chr4D 88.448 277 31 1 6724 6999 427612618 427612342 4.050000e-87 333.0
72 TraesCS3B01G373400 chr4D 87.726 277 32 2 6724 6999 69481625 69481350 8.760000e-84 322.0
73 TraesCS3B01G373400 chr4D 87.732 269 32 1 6731 6999 425162494 425162227 5.270000e-81 313.0
74 TraesCS3B01G373400 chr4D 85.926 270 35 3 6731 6999 318591734 318592001 1.150000e-72 285.0
75 TraesCS3B01G373400 chr4D 85.502 269 37 2 6731 6999 189733431 189733697 5.350000e-71 279.0
76 TraesCS3B01G373400 chr2B 81.475 610 86 13 1 596 614505323 614505919 6.350000e-130 475.0
77 TraesCS3B01G373400 chr2B 92.500 40 3 0 2823 2862 571771934 571771895 2.730000e-04 58.4
78 TraesCS3B01G373400 chr4A 81.304 583 77 19 52 617 496058479 496059046 1.790000e-120 444.0
79 TraesCS3B01G373400 chr7D 90.614 277 24 2 6723 6999 197874033 197874307 3.990000e-97 366.0
80 TraesCS3B01G373400 chr7D 92.857 42 2 1 6373 6414 143366289 143366329 7.580000e-05 60.2
81 TraesCS3B01G373400 chr5D 88.489 278 30 2 6723 6999 4029042 4029318 1.120000e-87 335.0
82 TraesCS3B01G373400 chr5D 87.900 281 29 5 6719 6997 563104318 563104595 6.770000e-85 326.0
83 TraesCS3B01G373400 chr5D 88.000 275 30 3 6725 6999 61412055 61411784 8.760000e-84 322.0
84 TraesCS3B01G373400 chr5D 87.143 280 34 2 6717 6994 360751693 360751414 4.070000e-82 316.0
85 TraesCS3B01G373400 chrUn 88.406 276 31 1 6724 6999 22531488 22531762 1.460000e-86 331.0
86 TraesCS3B01G373400 chrUn 90.385 208 18 2 6792 6999 83495090 83495295 8.950000e-69 272.0
87 TraesCS3B01G373400 chrUn 82.456 285 45 4 6717 6999 42589013 42589294 1.950000e-60 244.0
88 TraesCS3B01G373400 chrUn 83.459 266 41 3 6736 6999 49583096 49582832 1.950000e-60 244.0
89 TraesCS3B01G373400 chrUn 81.973 294 48 5 6709 6999 320692153 320692444 1.950000e-60 244.0
90 TraesCS3B01G373400 chrUn 85.714 231 31 2 6769 6999 67960124 67959896 7.010000e-60 243.0
91 TraesCS3B01G373400 chrUn 84.711 242 37 0 6758 6999 327523842 327524083 7.010000e-60 243.0
92 TraesCS3B01G373400 chrUn 82.007 289 48 4 6713 6999 344974972 344975258 7.010000e-60 243.0
93 TraesCS3B01G373400 chrUn 86.607 224 23 6 6778 6999 103111211 103110993 2.520000e-59 241.0
94 TraesCS3B01G373400 chrUn 82.500 280 42 6 6725 6999 2474701 2474424 9.070000e-59 239.0
95 TraesCS3B01G373400 chrUn 82.500 280 42 6 6725 6999 317006969 317006692 9.070000e-59 239.0
96 TraesCS3B01G373400 chrUn 82.500 280 42 6 6725 6999 358469350 358469073 9.070000e-59 239.0
97 TraesCS3B01G373400 chrUn 81.661 289 49 4 6713 6999 240107332 240107618 3.260000e-58 237.0
98 TraesCS3B01G373400 chr6D 85.926 270 34 4 6731 6999 239295148 239294882 1.150000e-72 285.0
99 TraesCS3B01G373400 chr6D 85.609 271 36 3 6730 6999 58834464 58834196 1.490000e-71 281.0
100 TraesCS3B01G373400 chr6D 87.097 248 27 3 6754 6999 341377425 341377181 6.920000e-70 276.0
101 TraesCS3B01G373400 chr6D 87.190 242 31 0 6758 6999 377820552 377820793 6.920000e-70 276.0
102 TraesCS3B01G373400 chr6D 85.185 270 37 3 6731 6999 352834902 352834635 2.490000e-69 274.0
103 TraesCS3B01G373400 chr6D 84.758 269 38 3 6731 6999 39567593 39567328 4.160000e-67 267.0
104 TraesCS3B01G373400 chr6D 86.531 245 30 2 6758 6999 159505482 159505238 4.160000e-67 267.0
105 TraesCS3B01G373400 chr6D 84.758 269 37 3 6731 6999 347168858 347168594 4.160000e-67 267.0
106 TraesCS3B01G373400 chr6D 84.444 270 38 4 6731 6999 141275505 141275239 5.380000e-66 263.0
107 TraesCS3B01G373400 chr6D 82.986 288 45 3 6713 6999 131622858 131623142 2.500000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G373400 chr3B 586420966 586427964 6998 False 12925.000000 12925 100.000000 1 6999 1 chr3B.!!$F3 6998
1 TraesCS3B01G373400 chr3B 3811864 3814012 2148 False 3022.000000 3022 92.141000 2820 4963 1 chr3B.!!$F1 2143
2 TraesCS3B01G373400 chr3B 187535471 187537624 2153 True 2780.000000 2780 90.147000 2825 4964 1 chr3B.!!$R1 2139
3 TraesCS3B01G373400 chr3B 685192299 685193714 1415 True 2041.000000 2041 92.802000 3557 4962 1 chr3B.!!$R4 1405
4 TraesCS3B01G373400 chr3B 586340954 586342956 2002 False 770.000000 1140 90.048667 970 6017 3 chr3B.!!$F6 5047
5 TraesCS3B01G373400 chr4B 69919169 69921304 2135 True 3406.000000 3406 95.463000 2825 4959 1 chr4B.!!$R1 2134
6 TraesCS3B01G373400 chr4B 118658174 118658786 612 False 475.000000 475 81.150000 13 622 1 chr4B.!!$F1 609
7 TraesCS3B01G373400 chr5B 588877582 588879717 2135 False 3387.000000 3387 95.285000 2825 4963 1 chr5B.!!$F1 2138
8 TraesCS3B01G373400 chr1B 611704311 611706386 2075 False 3321.000000 3321 95.529000 2820 4897 1 chr1B.!!$F2 2077
9 TraesCS3B01G373400 chr1B 517079351 517081489 2138 False 3216.000000 3216 93.858000 2817 4952 1 chr1B.!!$F1 2135
10 TraesCS3B01G373400 chr1B 35004154 35006201 2047 True 3182.000000 3182 94.627000 2862 4926 1 chr1B.!!$R1 2064
11 TraesCS3B01G373400 chr1B 349838132 349841145 3013 False 389.500000 562 86.804250 995 5987 4 chr1B.!!$F3 4992
12 TraesCS3B01G373400 chr7B 479897382 479899518 2136 False 3262.000000 3262 94.208000 2823 4961 1 chr7B.!!$F3 2138
13 TraesCS3B01G373400 chr7B 479874171 479876307 2136 False 3251.000000 3251 94.115000 2823 4961 1 chr7B.!!$F2 2138
14 TraesCS3B01G373400 chr7B 362387240 362389358 2118 True 3129.000000 3129 93.409000 2852 4961 1 chr7B.!!$R1 2109
15 TraesCS3B01G373400 chr6B 63411058 63413195 2137 False 3247.000000 3247 94.076000 2822 4961 1 chr6B.!!$F1 2139
16 TraesCS3B01G373400 chr3A 10662118 10664258 2140 True 3055.000000 3055 92.490000 2825 4963 1 chr3A.!!$R1 2138
17 TraesCS3B01G373400 chr3A 106490469 106492598 2129 True 2789.000000 2789 90.333000 2823 4967 1 chr3A.!!$R2 2144
18 TraesCS3B01G373400 chr3A 588724221 588729170 4949 False 828.000000 1465 91.168833 662 6721 6 chr3A.!!$F3 6059
19 TraesCS3B01G373400 chr3A 588657676 588659706 2030 False 746.000000 1140 90.044333 970 6017 3 chr3A.!!$F1 5047
20 TraesCS3B01G373400 chr3A 588689802 588690792 990 False 425.750000 758 89.716500 1 692 2 chr3A.!!$F2 691
21 TraesCS3B01G373400 chr7A 183384127 183386254 2127 True 2678.000000 2678 89.444000 2823 4962 1 chr7A.!!$R1 2139
22 TraesCS3B01G373400 chr7A 452624555 452626683 2128 True 2571.000000 2571 88.560000 2825 4962 1 chr7A.!!$R2 2137
23 TraesCS3B01G373400 chr7A 80545062 80546861 1799 False 2220.000000 2220 88.992000 3152 4961 1 chr7A.!!$F1 1809
24 TraesCS3B01G373400 chr5A 560043735 560045580 1845 True 2414.000000 2414 90.389000 3125 4961 1 chr5A.!!$R1 1836
25 TraesCS3B01G373400 chr3D 446909124 446913712 4588 False 1939.333333 2150 90.086000 1 6721 3 chr3D.!!$F3 6720
26 TraesCS3B01G373400 chr3D 446854218 446856217 1999 False 770.333333 1146 89.232667 970 6017 3 chr3D.!!$F2 5047
27 TraesCS3B01G373400 chr3D 550271244 550271868 624 False 538.000000 538 82.656000 2 625 1 chr3D.!!$F1 623
28 TraesCS3B01G373400 chr3D 267220379 267220932 553 True 448.000000 448 81.866000 80 628 1 chr3D.!!$R1 548
29 TraesCS3B01G373400 chr1D 261879534 261881266 1732 True 403.333333 597 86.806000 1394 5987 3 chr1D.!!$R2 4593
30 TraesCS3B01G373400 chr1A 337981718 337987441 5723 False 353.000000 590 86.554400 995 5987 5 chr1A.!!$F2 4992
31 TraesCS3B01G373400 chr2D 521408795 521409402 607 True 534.000000 534 82.903000 1 606 1 chr2D.!!$R2 605
32 TraesCS3B01G373400 chr2D 209118627 209119248 621 True 496.000000 496 81.522000 1 628 1 chr2D.!!$R1 627
33 TraesCS3B01G373400 chr4D 83849452 83850077 625 False 532.000000 532 82.445000 1 622 1 chr4D.!!$F1 621
34 TraesCS3B01G373400 chr2B 614505323 614505919 596 False 475.000000 475 81.475000 1 596 1 chr2B.!!$F1 595
35 TraesCS3B01G373400 chr4A 496058479 496059046 567 False 444.000000 444 81.304000 52 617 1 chr4A.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 1282 0.163788 CCGAATCACTCACACGCAAC 59.836 55.0 0.00 0.0 0.00 4.17 F
2026 6026 0.105964 AAGGCACACGACACTGCTAA 59.894 50.0 0.00 0.0 33.63 3.09 F
2872 6948 0.178964 CCCTCCAGGCCACTTTTTCA 60.179 55.0 5.01 0.0 0.00 2.69 F
4330 8445 0.110238 CGATTTGCTGTTGTCCGGTG 60.110 55.0 0.00 0.0 0.00 4.94 F
4985 9174 0.249953 CAGCCACCAATGCAAGCAAA 60.250 50.0 0.00 0.0 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2820 6893 0.461548 CGGCTGGAGATGCTCTAACA 59.538 55.0 0.00 0.0 0.00 2.41 R
3950 8065 0.039035 TGGCGCCTTTGTAAATCCCT 59.961 50.0 29.70 0.0 0.00 4.20 R
4854 9002 0.940991 GTTTTACGCCCAGTCGTCGT 60.941 55.0 0.00 0.0 43.15 4.34 R
5421 10689 0.029300 CAAACCACAGTTCGGCACAG 59.971 55.0 0.00 0.0 34.19 3.66 R
6747 12565 0.532417 TTGGCCATGTTGCTTTGTGC 60.532 50.0 6.09 0.0 43.25 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 2.490115 ACAAGCCAGTGAAACGTGAAAA 59.510 40.909 0.00 0.00 45.86 2.29
145 146 3.057174 ACAAGCCAGTGAAACGTGAAAAA 60.057 39.130 0.00 0.00 45.86 1.94
166 167 2.957402 ATGCACCTTCTGGAAGTGAA 57.043 45.000 9.15 3.69 36.72 3.18
242 251 7.973388 TGTGGTTTACTTCAAAAGAGTGAAATG 59.027 33.333 0.00 0.00 37.08 2.32
245 256 8.188139 GGTTTACTTCAAAAGAGTGAAATGTGA 58.812 33.333 0.00 0.00 37.08 3.58
251 262 9.304731 CTTCAAAAGAGTGAAATGTGATTTTCA 57.695 29.630 0.00 0.00 41.92 2.69
252 263 9.650539 TTCAAAAGAGTGAAATGTGATTTTCAA 57.349 25.926 1.52 0.00 44.71 2.69
299 319 8.925161 TTTCATCAAACAAACTAGTGAAAAGG 57.075 30.769 0.00 0.00 32.93 3.11
318 338 7.343316 TGAAAAGGGAAATGTAGGTTCTGAAAA 59.657 33.333 0.00 0.00 0.00 2.29
363 383 9.959749 GAAATATCAACTTGTGAAACTGGTTTA 57.040 29.630 0.00 0.00 40.50 2.01
368 388 9.665719 ATCAACTTGTGAAACTGGTTTATTTTT 57.334 25.926 0.00 0.00 40.50 1.94
369 389 9.145865 TCAACTTGTGAAACTGGTTTATTTTTC 57.854 29.630 0.00 0.00 38.04 2.29
370 390 9.150348 CAACTTGTGAAACTGGTTTATTTTTCT 57.850 29.630 0.00 0.00 38.04 2.52
371 391 9.719355 AACTTGTGAAACTGGTTTATTTTTCTT 57.281 25.926 0.00 0.00 38.04 2.52
393 413 9.868277 TTCTTGAAATGTGTGATAGTTTGTTTT 57.132 25.926 0.00 0.00 0.00 2.43
530 560 5.626543 CCGAAATGTCAACTTGTGAAATCTG 59.373 40.000 0.00 0.00 38.23 2.90
548 579 8.236586 TGAAATCTGTTATTTCGAAATGTGGAG 58.763 33.333 29.20 19.24 40.02 3.86
682 1014 1.733912 ACATGCACAGAGTGTATTGCG 59.266 47.619 0.00 0.00 36.79 4.85
809 1141 2.411289 CGCAATTTTCCATTTTGCACGG 60.411 45.455 7.53 0.00 44.58 4.94
810 1142 2.665245 GCAATTTTCCATTTTGCACGGC 60.665 45.455 2.25 0.00 43.95 5.68
812 1144 2.540265 TTTTCCATTTTGCACGGCAT 57.460 40.000 0.00 0.00 38.76 4.40
813 1145 3.667497 TTTTCCATTTTGCACGGCATA 57.333 38.095 0.00 0.00 38.76 3.14
814 1146 3.883830 TTTCCATTTTGCACGGCATAT 57.116 38.095 0.00 0.00 38.76 1.78
889 1221 1.202533 CGAAGAGATAACGTGGCCCAT 60.203 52.381 0.00 0.00 0.00 4.00
940 1274 4.467084 GGCCGGCCGAATCACTCA 62.467 66.667 33.60 0.00 0.00 3.41
944 1278 2.444624 CGGCCGAATCACTCACACG 61.445 63.158 24.07 0.00 0.00 4.49
946 1280 2.027073 GCCGAATCACTCACACGCA 61.027 57.895 0.00 0.00 0.00 5.24
947 1281 1.565156 GCCGAATCACTCACACGCAA 61.565 55.000 0.00 0.00 0.00 4.85
948 1282 0.163788 CCGAATCACTCACACGCAAC 59.836 55.000 0.00 0.00 0.00 4.17
949 1283 0.858583 CGAATCACTCACACGCAACA 59.141 50.000 0.00 0.00 0.00 3.33
950 1284 1.136529 CGAATCACTCACACGCAACAG 60.137 52.381 0.00 0.00 0.00 3.16
951 1285 0.588252 AATCACTCACACGCAACAGC 59.412 50.000 0.00 0.00 0.00 4.40
952 1286 0.250038 ATCACTCACACGCAACAGCT 60.250 50.000 0.00 0.00 0.00 4.24
953 1287 0.875908 TCACTCACACGCAACAGCTC 60.876 55.000 0.00 0.00 0.00 4.09
954 1288 1.951130 ACTCACACGCAACAGCTCG 60.951 57.895 0.00 0.00 0.00 5.03
1087 1422 4.410400 GCTGGTACCTTGCCGCCT 62.410 66.667 14.36 0.00 0.00 5.52
1089 1424 1.303317 CTGGTACCTTGCCGCCTTT 60.303 57.895 14.36 0.00 0.00 3.11
1221 1556 4.415332 GAGCACGCGACCTTCCGA 62.415 66.667 15.93 0.00 0.00 4.55
1391 5237 5.261216 TCAGGATATCCGCTGACATACATA 58.739 41.667 16.21 0.00 42.08 2.29
1392 5238 5.893824 TCAGGATATCCGCTGACATACATAT 59.106 40.000 16.21 0.00 42.08 1.78
1399 5245 3.304293 CCGCTGACATACATATATGCGTG 59.696 47.826 12.79 13.22 41.83 5.34
1400 5246 3.920412 CGCTGACATACATATATGCGTGT 59.080 43.478 18.34 18.34 41.83 4.49
1423 5273 3.750639 TGTTTCTGAACGAACACAACC 57.249 42.857 0.00 0.00 38.65 3.77
1898 5839 0.596577 CGTTCTGGAAGGTGTCGAGA 59.403 55.000 0.00 0.00 39.15 4.04
1978 5919 1.089481 ATGTACAAGCGCATCCGTGG 61.089 55.000 11.47 0.00 36.67 4.94
2023 5970 2.633657 CAAGGCACACGACACTGC 59.366 61.111 0.00 0.00 0.00 4.40
2026 6026 0.105964 AAGGCACACGACACTGCTAA 59.894 50.000 0.00 0.00 33.63 3.09
2085 6095 1.800586 CGTTGATGACTTGACAGGTGG 59.199 52.381 0.00 0.00 0.00 4.61
2096 6106 0.741221 GACAGGTGGCGAAGGATGAC 60.741 60.000 0.00 0.00 0.00 3.06
2127 6137 1.670811 GATTCATACAGGCAACCACCG 59.329 52.381 0.00 0.00 33.69 4.94
2180 6190 6.155910 ACCTGAGAGACATGATACTGAACATT 59.844 38.462 0.00 0.00 0.00 2.71
2181 6191 7.343057 ACCTGAGAGACATGATACTGAACATTA 59.657 37.037 0.00 0.00 0.00 1.90
2322 6341 0.809385 GTCCATCGACGACTTCTCCA 59.191 55.000 0.00 0.00 0.00 3.86
2332 6351 1.270907 GACTTCTCCAGGAGCCTCAA 58.729 55.000 12.26 0.00 0.00 3.02
2476 6531 5.200483 TGTTGGGATTCCATGGAAGATTAC 58.800 41.667 29.98 22.11 43.63 1.89
2486 6541 4.885907 CCATGGAAGATTACAACTGCAGAT 59.114 41.667 23.35 5.41 0.00 2.90
2487 6542 5.359009 CCATGGAAGATTACAACTGCAGATT 59.641 40.000 23.35 8.26 0.00 2.40
2488 6543 6.127535 CCATGGAAGATTACAACTGCAGATTT 60.128 38.462 23.35 3.87 0.00 2.17
2489 6544 6.899393 TGGAAGATTACAACTGCAGATTTT 57.101 33.333 23.35 4.17 0.00 1.82
2490 6545 7.994425 TGGAAGATTACAACTGCAGATTTTA 57.006 32.000 23.35 5.82 0.00 1.52
2491 6546 8.579850 TGGAAGATTACAACTGCAGATTTTAT 57.420 30.769 23.35 7.88 0.00 1.40
2492 6547 9.023962 TGGAAGATTACAACTGCAGATTTTATT 57.976 29.630 23.35 0.00 0.00 1.40
2533 6590 7.088272 AGGCAAAAGATTTACCGTTCATTAAC 58.912 34.615 0.00 0.00 0.00 2.01
2587 6647 9.813826 ATTAATACTTCTATTTTGGGATGGAGG 57.186 33.333 0.00 0.00 0.00 4.30
2588 6648 4.526438 ACTTCTATTTTGGGATGGAGGG 57.474 45.455 0.00 0.00 0.00 4.30
2592 6652 2.834638 ATTTTGGGATGGAGGGAGTG 57.165 50.000 0.00 0.00 0.00 3.51
2598 6658 2.654385 TGGGATGGAGGGAGTGAAAAAT 59.346 45.455 0.00 0.00 0.00 1.82
2642 6702 3.332485 ACTGGGACTTGGTTATGCCTTAA 59.668 43.478 0.00 0.00 38.35 1.85
2654 6714 6.816640 TGGTTATGCCTTAATCGATGCTATAC 59.183 38.462 0.00 0.00 38.35 1.47
2659 6719 5.413523 TGCCTTAATCGATGCTATACTCGTA 59.586 40.000 0.00 0.00 36.33 3.43
2725 6793 8.373048 TCTTTCTTACATGTTATGTCGTTGTT 57.627 30.769 2.30 0.00 43.67 2.83
2726 6794 9.478768 TCTTTCTTACATGTTATGTCGTTGTTA 57.521 29.630 2.30 0.00 43.67 2.41
2730 6798 9.425577 TCTTACATGTTATGTCGTTGTTAATGA 57.574 29.630 2.30 0.00 43.67 2.57
2731 6799 9.689075 CTTACATGTTATGTCGTTGTTAATGAG 57.311 33.333 2.30 0.00 43.67 2.90
2732 6800 7.899178 ACATGTTATGTCGTTGTTAATGAGA 57.101 32.000 0.00 0.00 39.92 3.27
2733 6801 7.739295 ACATGTTATGTCGTTGTTAATGAGAC 58.261 34.615 0.00 0.00 39.92 3.36
2738 6811 6.861065 ATGTCGTTGTTAATGAGACAAGTT 57.139 33.333 9.08 0.00 43.72 2.66
2742 6815 6.846283 GTCGTTGTTAATGAGACAAGTTTCAG 59.154 38.462 0.03 0.00 37.65 3.02
2783 6856 2.417243 GCCCAACGAAAAATCCATCCAG 60.417 50.000 0.00 0.00 0.00 3.86
2793 6866 0.928505 ATCCATCCAGAATGTGCCCA 59.071 50.000 0.00 0.00 33.13 5.36
2818 6891 3.985019 TGATACCCGTAAAGGCAAAGA 57.015 42.857 0.00 0.00 39.21 2.52
2819 6892 3.869065 TGATACCCGTAAAGGCAAAGAG 58.131 45.455 0.00 0.00 39.21 2.85
2820 6893 3.262405 TGATACCCGTAAAGGCAAAGAGT 59.738 43.478 0.00 0.00 39.21 3.24
2872 6948 0.178964 CCCTCCAGGCCACTTTTTCA 60.179 55.000 5.01 0.00 0.00 2.69
3503 7618 1.469940 CGTCTCGAAGGCTACTGCATT 60.470 52.381 0.00 0.00 46.43 3.56
3776 7891 3.073062 AGTCCACCAGCATAGAGTGTTTT 59.927 43.478 0.00 0.00 0.00 2.43
3787 7902 8.345565 CAGCATAGAGTGTTTTTACAAGTTCTT 58.654 33.333 0.00 0.00 0.00 2.52
3798 7913 1.134220 ACAAGTTCTTTCGGGCAGTGA 60.134 47.619 0.00 0.00 0.00 3.41
3840 7955 1.202758 ACTTGAGAACACCCAATGCGA 60.203 47.619 0.00 0.00 0.00 5.10
4122 8237 2.231716 TGAAGGTCATTCTCCTCCGA 57.768 50.000 0.00 0.00 38.83 4.55
4147 8262 1.428370 TTCGAGATCAATTGGCGGCG 61.428 55.000 0.51 0.51 0.00 6.46
4173 8288 5.774179 ACAACAAGGGGTACTATCTAGCTA 58.226 41.667 0.00 0.00 0.00 3.32
4222 8337 6.883756 ACATTTGTCAAAACCATCAAAAACCT 59.116 30.769 1.31 0.00 34.32 3.50
4281 8396 0.839946 GGAGGCTTGCAGGAAGGATA 59.160 55.000 0.00 0.00 31.56 2.59
4330 8445 0.110238 CGATTTGCTGTTGTCCGGTG 60.110 55.000 0.00 0.00 0.00 4.94
4379 8494 1.956869 TGTGGGAGATCATGACCTGT 58.043 50.000 0.00 0.00 0.00 4.00
4603 8722 4.373116 GCTCAAGGGCGACACCGA 62.373 66.667 0.00 0.00 40.62 4.69
4833 8958 2.295909 CGAAATGGGGCTTCAAAAGTGA 59.704 45.455 0.00 0.00 0.00 3.41
4834 8959 3.243704 CGAAATGGGGCTTCAAAAGTGAA 60.244 43.478 0.00 0.00 41.57 3.18
4854 9002 2.173519 ACCAAAATCGACGACTAGGGA 58.826 47.619 0.00 0.00 0.00 4.20
4985 9174 0.249953 CAGCCACCAATGCAAGCAAA 60.250 50.000 0.00 0.00 0.00 3.68
4996 9185 1.881973 TGCAAGCAAATCTCACAGGAC 59.118 47.619 0.00 0.00 0.00 3.85
5065 10330 3.935828 GAGTAAAACTCAGTCCAGATGGC 59.064 47.826 2.22 0.00 44.45 4.40
5075 10340 2.769095 AGTCCAGATGGCTCTTACCTTC 59.231 50.000 0.00 0.00 34.78 3.46
5113 10379 3.072768 AGGCATGATTCTCAGGGATTCTC 59.927 47.826 0.00 0.00 0.00 2.87
5222 10488 7.014615 GGGAATTTCATTAGCACTACAATGGAT 59.985 37.037 0.00 0.00 33.77 3.41
5247 10515 5.359194 ACTTACCCATTGATGTCGAATCT 57.641 39.130 0.00 0.00 0.00 2.40
5324 10592 2.540361 GCATGCGTTCATCATCAAGGAC 60.540 50.000 0.00 0.00 0.00 3.85
5357 10625 5.679601 AGTATGGAGGAAAGAGATTCTTGC 58.320 41.667 0.00 0.00 36.71 4.01
5374 10642 1.977188 TGCATTAGTCACACTCGTCG 58.023 50.000 0.00 0.00 0.00 5.12
5396 10664 7.513196 CGTCGAAACTGTAATAATGCTAGTCAC 60.513 40.741 0.00 0.00 0.00 3.67
5398 10666 8.033038 TCGAAACTGTAATAATGCTAGTCACTT 58.967 33.333 0.00 0.00 0.00 3.16
5399 10667 8.321716 CGAAACTGTAATAATGCTAGTCACTTC 58.678 37.037 0.00 0.00 0.00 3.01
5403 10671 8.260818 ACTGTAATAATGCTAGTCACTTCATGT 58.739 33.333 0.00 0.00 0.00 3.21
5413 10681 5.931441 AGTCACTTCATGTCTACTTTTGC 57.069 39.130 0.00 0.00 0.00 3.68
5421 10689 6.241207 TCATGTCTACTTTTGCTAGTTTGC 57.759 37.500 0.00 0.00 0.00 3.68
5422 10690 5.997746 TCATGTCTACTTTTGCTAGTTTGCT 59.002 36.000 0.00 0.00 0.00 3.91
5453 10721 1.184970 TGGTTTGGCTAGGCTTTGGC 61.185 55.000 18.18 0.00 37.82 4.52
5465 10733 0.962855 GCTTTGGCCCAGAAGAGGTC 60.963 60.000 13.12 0.00 0.00 3.85
5478 10746 6.821665 CCCAGAAGAGGTCGTGAAAATTATTA 59.178 38.462 0.00 0.00 0.00 0.98
5535 10807 6.090223 ACGAGAACTTTTTCGCAAAACAAAAT 59.910 30.769 2.07 0.00 40.32 1.82
6022 11791 4.242475 CACCTTTGTACTCAAGATACGCA 58.758 43.478 6.88 0.00 34.88 5.24
6025 11794 6.701841 CACCTTTGTACTCAAGATACGCATAT 59.298 38.462 6.88 0.00 34.88 1.78
6030 11799 6.368213 TGTACTCAAGATACGCATATGTACG 58.632 40.000 4.29 2.86 32.90 3.67
6047 11816 4.242475 TGTACGCGATTGAATGTCTCTTT 58.758 39.130 15.93 0.00 0.00 2.52
6115 11888 1.760613 GGACATGGAAGTGGATCCGTA 59.239 52.381 7.39 0.00 42.76 4.02
6153 11926 9.575783 TTTGTGAACTACCTTGTTTTTACATTC 57.424 29.630 0.00 0.00 0.00 2.67
6154 11927 7.411274 TGTGAACTACCTTGTTTTTACATTCG 58.589 34.615 0.00 0.00 0.00 3.34
6157 11930 7.446013 TGAACTACCTTGTTTTTACATTCGGAT 59.554 33.333 0.00 0.00 0.00 4.18
6158 11931 7.141100 ACTACCTTGTTTTTACATTCGGATG 57.859 36.000 0.88 0.88 39.25 3.51
6159 11932 6.938030 ACTACCTTGTTTTTACATTCGGATGA 59.062 34.615 11.64 0.00 36.73 2.92
6160 11933 6.009115 ACCTTGTTTTTACATTCGGATGAC 57.991 37.500 11.64 0.00 36.73 3.06
6161 11934 5.533154 ACCTTGTTTTTACATTCGGATGACA 59.467 36.000 11.64 0.31 36.73 3.58
6172 11947 1.065551 TCGGATGACACGTATGAGCAG 59.934 52.381 0.00 0.00 0.00 4.24
6427 12244 9.108284 TCACGAAATATTAAGATTCTTCATGCA 57.892 29.630 1.27 0.00 0.00 3.96
6428 12245 9.378597 CACGAAATATTAAGATTCTTCATGCAG 57.621 33.333 1.27 0.00 0.00 4.41
6489 12306 8.851541 AGTCATAAACCCTTAATGACGTTTTA 57.148 30.769 8.55 0.00 44.39 1.52
6493 12310 6.394025 AAACCCTTAATGACGTTTTAGCAA 57.606 33.333 0.00 0.00 0.00 3.91
6500 12317 9.113876 CCTTAATGACGTTTTAGCAAGTTTTAG 57.886 33.333 0.00 0.00 0.00 1.85
6609 12427 4.819630 ACAACATTTGAACATGTAGTCGGT 59.180 37.500 0.00 0.00 36.30 4.69
6660 12478 5.382573 TGTTTAGCGTGCATTTCAAAAAC 57.617 34.783 0.00 0.00 0.00 2.43
6669 12487 2.220824 GCATTTCAAAAACGCCACTTCC 59.779 45.455 0.00 0.00 0.00 3.46
6681 12499 1.866601 GCCACTTCCACACAAAAATGC 59.133 47.619 0.00 0.00 0.00 3.56
6740 12558 6.485830 TTTTTCCAAATGATAACACCCACA 57.514 33.333 0.00 0.00 0.00 4.17
6741 12559 5.461032 TTTCCAAATGATAACACCCACAC 57.539 39.130 0.00 0.00 0.00 3.82
6742 12560 3.078097 TCCAAATGATAACACCCACACG 58.922 45.455 0.00 0.00 0.00 4.49
6743 12561 2.817258 CCAAATGATAACACCCACACGT 59.183 45.455 0.00 0.00 0.00 4.49
6744 12562 3.365868 CCAAATGATAACACCCACACGTG 60.366 47.826 15.48 15.48 39.75 4.49
6746 12564 1.872388 TGATAACACCCACACGTGTG 58.128 50.000 36.13 36.13 46.19 3.82
6754 12572 4.688192 CACACGTGTGGCACAAAG 57.312 55.556 35.65 20.89 44.16 2.77
6755 12573 1.586042 CACACGTGTGGCACAAAGC 60.586 57.895 35.65 9.38 44.16 3.51
6762 12580 2.903284 GTGGCACAAAGCAACATGG 58.097 52.632 13.86 0.00 46.95 3.66
6763 12581 1.223417 GTGGCACAAAGCAACATGGC 61.223 55.000 13.86 0.00 46.95 4.40
6764 12582 3.955775 GCACAAAGCAACATGGCC 58.044 55.556 0.00 0.00 44.79 5.36
6765 12583 1.069427 GCACAAAGCAACATGGCCA 59.931 52.632 8.56 8.56 44.79 5.36
6766 12584 0.532417 GCACAAAGCAACATGGCCAA 60.532 50.000 10.96 0.00 44.79 4.52
6767 12585 1.950828 CACAAAGCAACATGGCCAAA 58.049 45.000 10.96 0.00 0.00 3.28
6768 12586 2.286872 CACAAAGCAACATGGCCAAAA 58.713 42.857 10.96 0.00 0.00 2.44
6769 12587 2.031930 CACAAAGCAACATGGCCAAAAC 59.968 45.455 10.96 0.00 0.00 2.43
6770 12588 1.261089 CAAAGCAACATGGCCAAAACG 59.739 47.619 10.96 0.58 0.00 3.60
6771 12589 0.879839 AAGCAACATGGCCAAAACGC 60.880 50.000 10.96 11.28 0.00 4.84
6778 12596 3.376546 GGCCAAAACGCCTCCATT 58.623 55.556 0.00 0.00 46.10 3.16
6779 12597 2.573920 GGCCAAAACGCCTCCATTA 58.426 52.632 0.00 0.00 46.10 1.90
6780 12598 1.111277 GGCCAAAACGCCTCCATTAT 58.889 50.000 0.00 0.00 46.10 1.28
6781 12599 1.067060 GGCCAAAACGCCTCCATTATC 59.933 52.381 0.00 0.00 46.10 1.75
6782 12600 1.748493 GCCAAAACGCCTCCATTATCA 59.252 47.619 0.00 0.00 0.00 2.15
6783 12601 2.362077 GCCAAAACGCCTCCATTATCAT 59.638 45.455 0.00 0.00 0.00 2.45
6784 12602 3.181476 GCCAAAACGCCTCCATTATCATT 60.181 43.478 0.00 0.00 0.00 2.57
6785 12603 4.610945 CCAAAACGCCTCCATTATCATTC 58.389 43.478 0.00 0.00 0.00 2.67
6786 12604 4.097741 CCAAAACGCCTCCATTATCATTCA 59.902 41.667 0.00 0.00 0.00 2.57
6787 12605 5.221303 CCAAAACGCCTCCATTATCATTCAT 60.221 40.000 0.00 0.00 0.00 2.57
6788 12606 6.275335 CAAAACGCCTCCATTATCATTCATT 58.725 36.000 0.00 0.00 0.00 2.57
6789 12607 6.469782 AAACGCCTCCATTATCATTCATTT 57.530 33.333 0.00 0.00 0.00 2.32
6790 12608 6.469782 AACGCCTCCATTATCATTCATTTT 57.530 33.333 0.00 0.00 0.00 1.82
6791 12609 5.835257 ACGCCTCCATTATCATTCATTTTG 58.165 37.500 0.00 0.00 0.00 2.44
6792 12610 4.682860 CGCCTCCATTATCATTCATTTTGC 59.317 41.667 0.00 0.00 0.00 3.68
6793 12611 4.992951 GCCTCCATTATCATTCATTTTGCC 59.007 41.667 0.00 0.00 0.00 4.52
6794 12612 5.453621 GCCTCCATTATCATTCATTTTGCCA 60.454 40.000 0.00 0.00 0.00 4.92
6795 12613 5.987347 CCTCCATTATCATTCATTTTGCCAC 59.013 40.000 0.00 0.00 0.00 5.01
6796 12614 6.407187 CCTCCATTATCATTCATTTTGCCACA 60.407 38.462 0.00 0.00 0.00 4.17
6797 12615 7.127012 TCCATTATCATTCATTTTGCCACAT 57.873 32.000 0.00 0.00 0.00 3.21
6798 12616 7.211573 TCCATTATCATTCATTTTGCCACATC 58.788 34.615 0.00 0.00 0.00 3.06
6799 12617 6.987404 CCATTATCATTCATTTTGCCACATCA 59.013 34.615 0.00 0.00 0.00 3.07
6800 12618 7.496263 CCATTATCATTCATTTTGCCACATCAA 59.504 33.333 0.00 0.00 0.00 2.57
6801 12619 8.884726 CATTATCATTCATTTTGCCACATCAAA 58.115 29.630 0.00 0.00 34.47 2.69
6802 12620 8.843885 TTATCATTCATTTTGCCACATCAAAA 57.156 26.923 4.45 4.45 46.14 2.44
6803 12621 6.542574 TCATTCATTTTGCCACATCAAAAC 57.457 33.333 4.11 0.00 45.28 2.43
6804 12622 6.053650 TCATTCATTTTGCCACATCAAAACA 58.946 32.000 4.11 0.00 45.28 2.83
6805 12623 6.711194 TCATTCATTTTGCCACATCAAAACAT 59.289 30.769 4.11 0.00 45.28 2.71
6806 12624 7.876582 TCATTCATTTTGCCACATCAAAACATA 59.123 29.630 4.11 0.00 45.28 2.29
6807 12625 8.670135 CATTCATTTTGCCACATCAAAACATAT 58.330 29.630 4.11 0.00 45.28 1.78
6808 12626 7.598189 TCATTTTGCCACATCAAAACATATG 57.402 32.000 0.00 0.00 45.28 1.78
6809 12627 7.384477 TCATTTTGCCACATCAAAACATATGA 58.616 30.769 10.38 2.52 45.28 2.15
6810 12628 7.331440 TCATTTTGCCACATCAAAACATATGAC 59.669 33.333 10.38 0.00 45.28 3.06
6811 12629 5.718724 TTGCCACATCAAAACATATGACA 57.281 34.783 10.38 0.00 0.00 3.58
6812 12630 5.918426 TGCCACATCAAAACATATGACAT 57.082 34.783 10.38 0.00 0.00 3.06
6813 12631 5.893687 TGCCACATCAAAACATATGACATC 58.106 37.500 10.38 0.00 0.00 3.06
6814 12632 5.418209 TGCCACATCAAAACATATGACATCA 59.582 36.000 10.38 0.00 0.00 3.07
6815 12633 5.975344 GCCACATCAAAACATATGACATCAG 59.025 40.000 10.38 0.00 0.00 2.90
6816 12634 5.975344 CCACATCAAAACATATGACATCAGC 59.025 40.000 10.38 0.00 0.00 4.26
6817 12635 5.679792 CACATCAAAACATATGACATCAGCG 59.320 40.000 10.38 0.00 0.00 5.18
6818 12636 4.880886 TCAAAACATATGACATCAGCGG 57.119 40.909 10.38 0.00 0.00 5.52
6819 12637 3.627123 TCAAAACATATGACATCAGCGGG 59.373 43.478 10.38 0.00 0.00 6.13
6820 12638 3.558931 AAACATATGACATCAGCGGGA 57.441 42.857 10.38 0.00 0.00 5.14
6821 12639 2.827800 ACATATGACATCAGCGGGAG 57.172 50.000 10.38 0.00 0.00 4.30
6822 12640 2.042464 ACATATGACATCAGCGGGAGT 58.958 47.619 10.38 0.00 0.00 3.85
6823 12641 2.036475 ACATATGACATCAGCGGGAGTC 59.964 50.000 10.38 3.45 0.00 3.36
6824 12642 2.073252 TATGACATCAGCGGGAGTCT 57.927 50.000 9.89 1.39 32.41 3.24
6825 12643 1.198713 ATGACATCAGCGGGAGTCTT 58.801 50.000 9.89 2.93 32.41 3.01
6826 12644 0.976641 TGACATCAGCGGGAGTCTTT 59.023 50.000 9.89 0.00 32.41 2.52
6827 12645 1.347707 TGACATCAGCGGGAGTCTTTT 59.652 47.619 9.89 0.00 32.41 2.27
6828 12646 2.224523 TGACATCAGCGGGAGTCTTTTT 60.225 45.455 9.89 0.00 32.41 1.94
6829 12647 3.007506 TGACATCAGCGGGAGTCTTTTTA 59.992 43.478 9.89 0.00 32.41 1.52
6830 12648 4.192317 GACATCAGCGGGAGTCTTTTTAT 58.808 43.478 0.00 0.00 0.00 1.40
6831 12649 4.589908 ACATCAGCGGGAGTCTTTTTATT 58.410 39.130 0.00 0.00 0.00 1.40
6832 12650 5.010282 ACATCAGCGGGAGTCTTTTTATTT 58.990 37.500 0.00 0.00 0.00 1.40
6833 12651 5.476945 ACATCAGCGGGAGTCTTTTTATTTT 59.523 36.000 0.00 0.00 0.00 1.82
6834 12652 6.015434 ACATCAGCGGGAGTCTTTTTATTTTT 60.015 34.615 0.00 0.00 0.00 1.94
6835 12653 6.009115 TCAGCGGGAGTCTTTTTATTTTTC 57.991 37.500 0.00 0.00 0.00 2.29
6836 12654 4.851558 CAGCGGGAGTCTTTTTATTTTTCG 59.148 41.667 0.00 0.00 0.00 3.46
6837 12655 4.082949 AGCGGGAGTCTTTTTATTTTTCGG 60.083 41.667 0.00 0.00 0.00 4.30
6838 12656 4.163552 CGGGAGTCTTTTTATTTTTCGGC 58.836 43.478 0.00 0.00 0.00 5.54
6839 12657 4.082949 CGGGAGTCTTTTTATTTTTCGGCT 60.083 41.667 0.00 0.00 0.00 5.52
6840 12658 5.564063 CGGGAGTCTTTTTATTTTTCGGCTT 60.564 40.000 0.00 0.00 0.00 4.35
6841 12659 6.348704 CGGGAGTCTTTTTATTTTTCGGCTTA 60.349 38.462 0.00 0.00 0.00 3.09
6842 12660 7.372714 GGGAGTCTTTTTATTTTTCGGCTTAA 58.627 34.615 0.00 0.00 0.00 1.85
6843 12661 7.868922 GGGAGTCTTTTTATTTTTCGGCTTAAA 59.131 33.333 0.00 0.00 0.00 1.52
6844 12662 9.251792 GGAGTCTTTTTATTTTTCGGCTTAAAA 57.748 29.630 0.00 0.00 0.00 1.52
6903 12721 9.602568 AAAATCTGTTTTTACCATTAAAACCGT 57.397 25.926 0.00 0.00 42.16 4.83
6904 12722 8.806177 AATCTGTTTTTACCATTAAAACCGTC 57.194 30.769 0.00 0.00 42.16 4.79
6905 12723 7.571080 TCTGTTTTTACCATTAAAACCGTCT 57.429 32.000 0.00 0.00 42.16 4.18
6906 12724 7.641760 TCTGTTTTTACCATTAAAACCGTCTC 58.358 34.615 0.00 0.00 42.16 3.36
6907 12725 6.428799 TGTTTTTACCATTAAAACCGTCTCG 58.571 36.000 0.00 0.00 42.16 4.04
6908 12726 6.259608 TGTTTTTACCATTAAAACCGTCTCGA 59.740 34.615 0.00 0.00 42.16 4.04
6909 12727 5.844301 TTTACCATTAAAACCGTCTCGAC 57.156 39.130 0.00 0.00 0.00 4.20
6910 12728 5.107530 TTTTACCATTAAAACCGTCTCGACG 60.108 40.000 12.19 12.19 41.43 5.12
6911 12729 7.227603 TTTTACCATTAAAACCGTCTCGACGA 61.228 38.462 19.91 0.00 42.69 4.20
6912 12730 8.933489 TTTTACCATTAAAACCGTCTCGACGAG 61.933 40.741 18.91 18.91 42.69 4.18
6923 12741 4.809455 GTCTCGACGAGATCTTCAAAAC 57.191 45.455 28.81 10.84 40.98 2.43
6924 12742 4.477780 GTCTCGACGAGATCTTCAAAACT 58.522 43.478 28.81 0.00 40.98 2.66
6925 12743 5.629097 GTCTCGACGAGATCTTCAAAACTA 58.371 41.667 28.81 0.33 40.98 2.24
6926 12744 5.735427 GTCTCGACGAGATCTTCAAAACTAG 59.265 44.000 28.81 0.00 40.98 2.57
6927 12745 5.642491 TCTCGACGAGATCTTCAAAACTAGA 59.358 40.000 23.27 0.00 33.35 2.43
6928 12746 6.316640 TCTCGACGAGATCTTCAAAACTAGAT 59.683 38.462 23.27 0.00 33.35 1.98
6929 12747 6.487960 TCGACGAGATCTTCAAAACTAGATC 58.512 40.000 0.00 0.00 37.89 2.75
6930 12748 5.683743 CGACGAGATCTTCAAAACTAGATCC 59.316 44.000 0.00 1.33 38.24 3.36
6931 12749 5.908341 ACGAGATCTTCAAAACTAGATCCC 58.092 41.667 0.00 0.00 38.24 3.85
6932 12750 5.422331 ACGAGATCTTCAAAACTAGATCCCA 59.578 40.000 0.00 0.00 38.24 4.37
6933 12751 6.098982 ACGAGATCTTCAAAACTAGATCCCAT 59.901 38.462 0.00 0.00 38.24 4.00
6934 12752 7.287927 ACGAGATCTTCAAAACTAGATCCCATA 59.712 37.037 0.00 0.00 38.24 2.74
6935 12753 8.310382 CGAGATCTTCAAAACTAGATCCCATAT 58.690 37.037 0.00 0.00 38.24 1.78
6937 12755 9.790344 AGATCTTCAAAACTAGATCCCATATTG 57.210 33.333 0.00 0.00 38.24 1.90
6938 12756 9.784531 GATCTTCAAAACTAGATCCCATATTGA 57.215 33.333 0.00 0.00 33.15 2.57
6950 12768 8.327941 AGATCCCATATTGATATGTTTCAACG 57.672 34.615 9.47 0.00 38.37 4.10
6951 12769 8.156820 AGATCCCATATTGATATGTTTCAACGA 58.843 33.333 9.47 0.00 38.37 3.85
6952 12770 8.690203 ATCCCATATTGATATGTTTCAACGAA 57.310 30.769 9.47 0.00 38.37 3.85
6953 12771 8.512966 TCCCATATTGATATGTTTCAACGAAA 57.487 30.769 9.47 0.00 38.37 3.46
6954 12772 9.130661 TCCCATATTGATATGTTTCAACGAAAT 57.869 29.630 9.47 0.00 38.37 2.17
6955 12773 9.748708 CCCATATTGATATGTTTCAACGAAATT 57.251 29.630 9.47 0.00 38.37 1.82
6980 12798 2.618442 AACCAAAAGTTGCCATGGTG 57.382 45.000 14.67 1.06 45.15 4.17
6981 12799 1.494960 ACCAAAAGTTGCCATGGTGT 58.505 45.000 14.67 0.00 44.25 4.16
6982 12800 1.836802 ACCAAAAGTTGCCATGGTGTT 59.163 42.857 14.67 0.00 44.25 3.32
6983 12801 2.238395 ACCAAAAGTTGCCATGGTGTTT 59.762 40.909 14.67 5.35 44.25 2.83
6984 12802 3.452627 ACCAAAAGTTGCCATGGTGTTTA 59.547 39.130 14.67 0.00 44.25 2.01
6985 12803 3.807071 CCAAAAGTTGCCATGGTGTTTAC 59.193 43.478 14.67 4.81 0.00 2.01
6986 12804 4.437239 CAAAAGTTGCCATGGTGTTTACA 58.563 39.130 14.67 0.00 0.00 2.41
6987 12805 3.726291 AAGTTGCCATGGTGTTTACAC 57.274 42.857 14.67 4.43 45.72 2.90
6988 12806 2.944129 AGTTGCCATGGTGTTTACACT 58.056 42.857 14.67 2.49 45.73 3.55
6989 12807 2.622942 AGTTGCCATGGTGTTTACACTG 59.377 45.455 14.67 4.48 45.73 3.66
6990 12808 2.356665 TGCCATGGTGTTTACACTGT 57.643 45.000 14.67 0.00 45.73 3.55
6991 12809 3.493767 TGCCATGGTGTTTACACTGTA 57.506 42.857 14.67 1.30 45.73 2.74
6992 12810 3.407698 TGCCATGGTGTTTACACTGTAG 58.592 45.455 14.67 2.17 45.73 2.74
6993 12811 3.181449 TGCCATGGTGTTTACACTGTAGT 60.181 43.478 14.67 0.00 45.73 2.73
6994 12812 3.818773 GCCATGGTGTTTACACTGTAGTT 59.181 43.478 14.67 0.00 45.73 2.24
6995 12813 4.320202 GCCATGGTGTTTACACTGTAGTTG 60.320 45.833 14.67 2.96 45.73 3.16
6996 12814 4.320202 CCATGGTGTTTACACTGTAGTTGC 60.320 45.833 12.32 0.00 45.73 4.17
6997 12815 3.207778 TGGTGTTTACACTGTAGTTGCC 58.792 45.455 12.32 0.00 45.73 4.52
6998 12816 3.207778 GGTGTTTACACTGTAGTTGCCA 58.792 45.455 12.32 0.00 45.73 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 2.097466 ACGTTTCACTGGCTTGTTTCAG 59.903 45.455 0.00 0.00 37.07 3.02
144 145 3.565307 TCACTTCCAGAAGGTGCATTTT 58.435 40.909 11.87 0.00 42.53 1.82
145 146 3.228188 TCACTTCCAGAAGGTGCATTT 57.772 42.857 11.87 0.00 42.53 2.32
146 147 2.957402 TCACTTCCAGAAGGTGCATT 57.043 45.000 11.87 0.00 42.53 3.56
147 148 2.957402 TTCACTTCCAGAAGGTGCAT 57.043 45.000 11.87 0.00 42.53 3.96
299 319 9.541143 TTTTTCATTTTCAGAACCTACATTTCC 57.459 29.630 0.00 0.00 0.00 3.13
530 560 5.622770 ACCACTCCACATTTCGAAATAAC 57.377 39.130 22.33 0.00 0.00 1.89
682 1014 8.896744 TGAATCATTTTTCAGATGAGATACACC 58.103 33.333 0.00 0.00 36.99 4.16
813 1145 9.844257 CTCTCTTGTTTCTTTCAATCCCTATAT 57.156 33.333 0.00 0.00 0.00 0.86
814 1146 8.267894 CCTCTCTTGTTTCTTTCAATCCCTATA 58.732 37.037 0.00 0.00 0.00 1.31
889 1221 0.533491 CGATTCCTTACGGTCCACCA 59.467 55.000 0.00 0.00 35.14 4.17
933 1265 0.250038 AGCTGTTGCGTGTGAGTGAT 60.250 50.000 0.00 0.00 45.42 3.06
940 1274 4.609018 AGCCGAGCTGTTGCGTGT 62.609 61.111 0.00 0.00 45.42 4.49
944 1278 3.797546 GCTGAGCCGAGCTGTTGC 61.798 66.667 2.98 0.00 39.88 4.17
950 1284 2.047844 TTGTGAGCTGAGCCGAGC 60.048 61.111 0.00 0.00 39.46 5.03
951 1285 0.735632 GACTTGTGAGCTGAGCCGAG 60.736 60.000 0.00 0.00 0.00 4.63
952 1286 1.290324 GACTTGTGAGCTGAGCCGA 59.710 57.895 0.00 0.00 0.00 5.54
953 1287 1.005748 TGACTTGTGAGCTGAGCCG 60.006 57.895 0.00 0.00 0.00 5.52
954 1288 0.250038 TGTGACTTGTGAGCTGAGCC 60.250 55.000 0.00 0.00 0.00 4.70
1065 1400 1.091771 CGGCAAGGTACCAGCAGATG 61.092 60.000 24.95 11.11 0.00 2.90
1073 1408 1.176619 AACAAAGGCGGCAAGGTACC 61.177 55.000 13.08 2.73 0.00 3.34
1391 5237 4.201714 CGTTCAGAAACATCACACGCATAT 60.202 41.667 0.00 0.00 34.93 1.78
1392 5238 3.122780 CGTTCAGAAACATCACACGCATA 59.877 43.478 0.00 0.00 34.93 3.14
1399 5245 4.530094 TGTGTTCGTTCAGAAACATCAC 57.470 40.909 0.00 0.00 41.10 3.06
1400 5246 4.201871 GGTTGTGTTCGTTCAGAAACATCA 60.202 41.667 0.00 0.00 41.10 3.07
1423 5273 0.997196 GTAGTTAGACGCGCCCTTTG 59.003 55.000 5.73 0.00 0.00 2.77
1632 5483 2.640316 AGGTTGACCTGAAAGTCCAC 57.360 50.000 0.97 0.00 46.55 4.02
1654 5505 2.279173 AGGAATTAACCAGAGGCAGGT 58.721 47.619 0.00 0.00 42.34 4.00
1655 5506 3.282885 GAAGGAATTAACCAGAGGCAGG 58.717 50.000 0.00 0.00 0.00 4.85
1657 5508 2.647299 TGGAAGGAATTAACCAGAGGCA 59.353 45.455 0.00 0.00 0.00 4.75
1898 5839 2.813908 GCGCCGACGTTGAGGAAT 60.814 61.111 3.74 0.00 42.83 3.01
1978 5919 1.080434 GATATCTCGTCCGCCCTGC 60.080 63.158 0.00 0.00 0.00 4.85
2023 5970 7.636359 GCTTCAGTTTCAAGCGTAACATATTAG 59.364 37.037 0.00 0.00 37.14 1.73
2026 6026 5.869350 GCTTCAGTTTCAAGCGTAACATAT 58.131 37.500 0.00 0.00 37.14 1.78
2085 6095 1.078848 ACAGCAGGTCATCCTTCGC 60.079 57.895 0.00 0.00 43.07 4.70
2096 6106 3.379240 CTGTATGAATCTCGACAGCAGG 58.621 50.000 0.00 0.00 33.48 4.85
2138 6148 0.977395 GGTGCTTGTAGTCCACCTCT 59.023 55.000 1.99 0.00 44.32 3.69
2180 6190 1.148273 GTCCTTGCCGGCCATGATA 59.852 57.895 26.77 0.00 0.00 2.15
2181 6191 2.124151 GTCCTTGCCGGCCATGAT 60.124 61.111 26.77 0.00 0.00 2.45
2227 6237 1.202065 GGTGCTTGCACATCATGTACG 60.202 52.381 24.34 0.00 36.68 3.67
2292 6311 2.509336 GATGGACGACGTGGCCTG 60.509 66.667 4.58 0.00 0.00 4.85
2322 6341 3.279183 CTCGTCGTTGAGGCTCCT 58.721 61.111 12.86 0.00 32.18 3.69
2332 6351 3.493830 TTGTTGAGCGCCTCGTCGT 62.494 57.895 2.29 0.00 32.35 4.34
2373 6392 2.257371 CCGAAGCGTCTCCGTCAA 59.743 61.111 0.00 0.00 36.15 3.18
2387 6406 2.678934 AGCGAAGGGTACAGCCGA 60.679 61.111 0.00 0.00 38.44 5.54
2568 6628 4.166919 ACTCCCTCCATCCCAAAATAGAAG 59.833 45.833 0.00 0.00 0.00 2.85
2570 6630 3.459598 CACTCCCTCCATCCCAAAATAGA 59.540 47.826 0.00 0.00 0.00 1.98
2571 6631 3.459598 TCACTCCCTCCATCCCAAAATAG 59.540 47.826 0.00 0.00 0.00 1.73
2572 6632 3.469859 TCACTCCCTCCATCCCAAAATA 58.530 45.455 0.00 0.00 0.00 1.40
2573 6633 2.287584 TCACTCCCTCCATCCCAAAAT 58.712 47.619 0.00 0.00 0.00 1.82
2574 6634 1.753903 TCACTCCCTCCATCCCAAAA 58.246 50.000 0.00 0.00 0.00 2.44
2575 6635 1.753903 TTCACTCCCTCCATCCCAAA 58.246 50.000 0.00 0.00 0.00 3.28
2576 6636 1.753903 TTTCACTCCCTCCATCCCAA 58.246 50.000 0.00 0.00 0.00 4.12
2577 6637 1.753903 TTTTCACTCCCTCCATCCCA 58.246 50.000 0.00 0.00 0.00 4.37
2578 6638 2.899303 TTTTTCACTCCCTCCATCCC 57.101 50.000 0.00 0.00 0.00 3.85
2579 6639 5.104318 AGACTATTTTTCACTCCCTCCATCC 60.104 44.000 0.00 0.00 0.00 3.51
2580 6640 5.995446 AGACTATTTTTCACTCCCTCCATC 58.005 41.667 0.00 0.00 0.00 3.51
2581 6641 6.183347 CAAGACTATTTTTCACTCCCTCCAT 58.817 40.000 0.00 0.00 0.00 3.41
2582 6642 5.560724 CAAGACTATTTTTCACTCCCTCCA 58.439 41.667 0.00 0.00 0.00 3.86
2583 6643 4.396478 GCAAGACTATTTTTCACTCCCTCC 59.604 45.833 0.00 0.00 0.00 4.30
2584 6644 5.249420 AGCAAGACTATTTTTCACTCCCTC 58.751 41.667 0.00 0.00 0.00 4.30
2585 6645 5.248380 AGCAAGACTATTTTTCACTCCCT 57.752 39.130 0.00 0.00 0.00 4.20
2586 6646 7.448748 TTTAGCAAGACTATTTTTCACTCCC 57.551 36.000 0.00 0.00 0.00 4.30
2587 6647 8.951243 AGATTTAGCAAGACTATTTTTCACTCC 58.049 33.333 0.00 0.00 0.00 3.85
2598 6658 7.415318 CCAGTCGACTAAGATTTAGCAAGACTA 60.415 40.741 19.57 0.00 34.05 2.59
2642 6702 7.618502 AAGATCTTACGAGTATAGCATCGAT 57.381 36.000 6.06 0.00 41.40 3.59
2654 6714 6.183360 TGGACCTCAATGTAAGATCTTACGAG 60.183 42.308 30.85 28.35 46.19 4.18
2720 6788 8.181573 TCAACTGAAACTTGTCTCATTAACAAC 58.818 33.333 0.00 0.00 33.30 3.32
2721 6789 8.181573 GTCAACTGAAACTTGTCTCATTAACAA 58.818 33.333 0.00 0.00 35.44 2.83
2725 6793 7.482654 CAGTCAACTGAAACTTGTCTCATTA 57.517 36.000 4.05 0.00 46.59 1.90
2726 6794 6.369059 CAGTCAACTGAAACTTGTCTCATT 57.631 37.500 4.05 0.00 46.59 2.57
2727 6795 5.998454 CAGTCAACTGAAACTTGTCTCAT 57.002 39.130 4.05 0.00 46.59 2.90
2762 6835 1.548269 TGGATGGATTTTTCGTTGGGC 59.452 47.619 0.00 0.00 0.00 5.36
2775 6848 0.703488 TTGGGCACATTCTGGATGGA 59.297 50.000 0.20 0.00 40.21 3.41
2783 6856 3.119137 GGGTATCAACTTTGGGCACATTC 60.119 47.826 0.00 0.00 0.00 2.67
2793 6866 4.023726 TGCCTTTACGGGTATCAACTTT 57.976 40.909 0.00 0.00 0.00 2.66
2818 6891 1.484240 GGCTGGAGATGCTCTAACACT 59.516 52.381 0.00 0.00 0.00 3.55
2819 6892 1.804372 CGGCTGGAGATGCTCTAACAC 60.804 57.143 0.00 0.00 0.00 3.32
2820 6893 0.461548 CGGCTGGAGATGCTCTAACA 59.538 55.000 0.00 0.00 0.00 2.41
2856 6930 1.172180 CGCTGAAAAAGTGGCCTGGA 61.172 55.000 3.32 0.00 32.37 3.86
2907 6983 1.725973 GCGCTTTTTGTCGTCCTGC 60.726 57.895 0.00 0.00 0.00 4.85
3776 7891 2.875933 CACTGCCCGAAAGAACTTGTAA 59.124 45.455 0.00 0.00 0.00 2.41
3787 7902 2.046023 CTGCCATCACTGCCCGAA 60.046 61.111 0.00 0.00 0.00 4.30
3798 7913 2.268076 GCGGTCCAAACACTGCCAT 61.268 57.895 0.00 0.00 42.10 4.40
3840 7955 1.270907 AGGATCCGAGCAGTGTCTTT 58.729 50.000 5.98 0.00 0.00 2.52
3950 8065 0.039035 TGGCGCCTTTGTAAATCCCT 59.961 50.000 29.70 0.00 0.00 4.20
3956 8071 1.663173 GCCTTTGGCGCCTTTGTAA 59.337 52.632 29.70 10.44 39.62 2.41
4122 8237 3.310774 CGCCAATTGATCTCGAAGTTCAT 59.689 43.478 7.12 0.00 0.00 2.57
4147 8262 5.509332 GCTAGATAGTACCCCTTGTTGTAGC 60.509 48.000 0.00 0.00 0.00 3.58
4208 8323 2.771372 AGGCACAAGGTTTTTGATGGTT 59.229 40.909 0.00 0.00 0.00 3.67
4281 8396 2.114670 CACCAAATGCCCGCTCGAT 61.115 57.895 0.00 0.00 0.00 3.59
4330 8445 3.462199 GACCAGGTATGAGCGGGGC 62.462 68.421 0.00 0.00 35.22 5.80
4340 8455 4.935205 CACATTTGATCTTTCGACCAGGTA 59.065 41.667 0.00 0.00 0.00 3.08
4603 8722 1.014044 ATTTCATCACACGTCGCGCT 61.014 50.000 5.56 0.00 0.00 5.92
4833 8958 2.564062 TCCCTAGTCGTCGATTTTGGTT 59.436 45.455 0.00 0.00 0.00 3.67
4834 8959 2.094338 GTCCCTAGTCGTCGATTTTGGT 60.094 50.000 0.00 0.00 0.00 3.67
4854 9002 0.940991 GTTTTACGCCCAGTCGTCGT 60.941 55.000 0.00 0.00 43.15 4.34
4985 9174 1.549620 CTGCTCAGTGTCCTGTGAGAT 59.450 52.381 3.53 0.00 42.49 2.75
4996 9185 0.322648 TGGTCATGGTCTGCTCAGTG 59.677 55.000 0.00 0.00 0.00 3.66
5055 10320 2.501723 TGAAGGTAAGAGCCATCTGGAC 59.498 50.000 0.00 0.00 35.37 4.02
5065 10330 4.893524 ACCCCTTTGTTTTGAAGGTAAGAG 59.106 41.667 2.57 0.00 41.70 2.85
5075 10340 0.532640 GCCTGCACCCCTTTGTTTTG 60.533 55.000 0.00 0.00 0.00 2.44
5113 10379 7.646922 GCATGAACTAAGAATTATTGAGCCTTG 59.353 37.037 0.00 0.00 0.00 3.61
5222 10488 7.279981 CAGATTCGACATCAATGGGTAAGTAAA 59.720 37.037 9.31 0.00 0.00 2.01
5247 10515 2.034685 CGAGATAGCCTCCGAACAATCA 59.965 50.000 0.00 0.00 38.71 2.57
5298 10566 4.177165 TGATGATGAACGCATGCTTTTT 57.823 36.364 17.13 5.93 34.11 1.94
5316 10584 8.211030 TCCATACTATCAATGATGTCCTTGAT 57.789 34.615 5.91 14.85 42.92 2.57
5324 10592 8.591940 TCTCTTTCCTCCATACTATCAATGATG 58.408 37.037 5.91 0.00 0.00 3.07
5357 10625 4.088638 CAGTTTCGACGAGTGTGACTAATG 59.911 45.833 0.00 0.00 0.00 1.90
5374 10642 9.151471 TGAAGTGACTAGCATTATTACAGTTTC 57.849 33.333 0.00 0.00 0.00 2.78
5396 10664 6.798959 GCAAACTAGCAAAAGTAGACATGAAG 59.201 38.462 0.00 0.00 0.00 3.02
5398 10666 5.997746 AGCAAACTAGCAAAAGTAGACATGA 59.002 36.000 0.00 0.00 36.85 3.07
5399 10667 6.082338 CAGCAAACTAGCAAAAGTAGACATG 58.918 40.000 0.00 0.00 36.85 3.21
5403 10671 4.024048 GCACAGCAAACTAGCAAAAGTAGA 60.024 41.667 0.00 0.00 36.85 2.59
5413 10681 1.195448 CAGTTCGGCACAGCAAACTAG 59.805 52.381 8.15 0.00 35.43 2.57
5421 10689 0.029300 CAAACCACAGTTCGGCACAG 59.971 55.000 0.00 0.00 34.19 3.66
5422 10690 1.380403 CCAAACCACAGTTCGGCACA 61.380 55.000 0.00 0.00 34.19 4.57
5453 10721 2.543777 TTTTCACGACCTCTTCTGGG 57.456 50.000 0.00 0.00 0.00 4.45
5454 10722 6.743575 AATAATTTTCACGACCTCTTCTGG 57.256 37.500 0.00 0.00 0.00 3.86
5478 10746 6.696441 AAGTTCGGTCTTATAATCTCGTCT 57.304 37.500 0.00 0.00 0.00 4.18
5579 10851 7.995289 TGAAGCACAAAAAGACAGAAGAAATA 58.005 30.769 0.00 0.00 0.00 1.40
5722 11002 1.375396 CCGGAAGACAATGGCGTCA 60.375 57.895 4.15 0.00 38.43 4.35
6022 11791 5.773575 AGAGACATTCAATCGCGTACATAT 58.226 37.500 5.77 0.00 0.00 1.78
6025 11794 3.503827 AGAGACATTCAATCGCGTACA 57.496 42.857 5.77 0.00 0.00 2.90
6047 11816 8.777865 ACATTCAATCACGAGATTCTAGAAAA 57.222 30.769 9.71 0.00 42.46 2.29
6050 11819 7.067494 TGAGACATTCAATCACGAGATTCTAGA 59.933 37.037 5.01 0.00 42.46 2.43
6051 11820 7.199078 TGAGACATTCAATCACGAGATTCTAG 58.801 38.462 5.01 0.00 42.46 2.43
6053 11822 5.970592 TGAGACATTCAATCACGAGATTCT 58.029 37.500 5.01 0.00 42.46 2.40
6054 11823 6.312426 ACTTGAGACATTCAATCACGAGATTC 59.688 38.462 5.01 0.00 44.48 2.52
6055 11824 6.169094 ACTTGAGACATTCAATCACGAGATT 58.831 36.000 1.92 1.92 44.48 2.40
6056 11825 5.728471 ACTTGAGACATTCAATCACGAGAT 58.272 37.500 0.00 0.00 44.48 2.75
6058 11827 7.276438 TCAATACTTGAGACATTCAATCACGAG 59.724 37.037 0.00 0.00 44.48 4.18
6059 11828 7.096551 TCAATACTTGAGACATTCAATCACGA 58.903 34.615 0.00 0.00 44.48 4.35
6060 11829 7.294676 TCAATACTTGAGACATTCAATCACG 57.705 36.000 0.00 0.00 44.48 4.35
6061 11830 7.965107 GGTTCAATACTTGAGACATTCAATCAC 59.035 37.037 0.00 0.00 44.48 3.06
6062 11831 7.884877 AGGTTCAATACTTGAGACATTCAATCA 59.115 33.333 0.00 0.00 44.48 2.57
6142 11915 5.025986 ACGTGTCATCCGAATGTAAAAAC 57.974 39.130 0.00 0.00 34.32 2.43
6149 11922 2.472861 GCTCATACGTGTCATCCGAATG 59.527 50.000 0.00 0.00 0.00 2.67
6151 11924 1.474879 TGCTCATACGTGTCATCCGAA 59.525 47.619 0.00 0.00 0.00 4.30
6153 11926 1.481240 CTGCTCATACGTGTCATCCG 58.519 55.000 0.00 0.00 0.00 4.18
6154 11927 1.202463 AGCTGCTCATACGTGTCATCC 60.202 52.381 0.00 0.00 0.00 3.51
6157 11930 1.546029 AGAAGCTGCTCATACGTGTCA 59.454 47.619 1.00 0.00 0.00 3.58
6158 11931 2.285827 AGAAGCTGCTCATACGTGTC 57.714 50.000 1.00 0.00 0.00 3.67
6159 11932 2.751166 AAGAAGCTGCTCATACGTGT 57.249 45.000 1.00 0.00 0.00 4.49
6160 11933 5.530519 TTTAAAGAAGCTGCTCATACGTG 57.469 39.130 1.00 0.00 0.00 4.49
6161 11934 6.554334 TTTTTAAAGAAGCTGCTCATACGT 57.446 33.333 1.00 0.00 0.00 3.57
6320 12136 8.867935 TCATGTACAATTTTGTTTTGTGAACAG 58.132 29.630 0.00 0.00 42.35 3.16
6321 12137 8.651588 GTCATGTACAATTTTGTTTTGTGAACA 58.348 29.630 0.00 0.00 42.35 3.18
6402 12219 9.378597 CTGCATGAAGAATCTTAATATTTCGTG 57.621 33.333 0.00 0.00 35.64 4.35
6404 12221 9.941664 AACTGCATGAAGAATCTTAATATTTCG 57.058 29.630 8.02 0.00 0.00 3.46
6464 12281 7.754851 AAAACGTCATTAAGGGTTTATGACT 57.245 32.000 13.80 2.87 39.39 3.41
6465 12282 7.695201 GCTAAAACGTCATTAAGGGTTTATGAC 59.305 37.037 8.17 8.17 35.12 3.06
6481 12298 6.799786 TTTGCTAAAACTTGCTAAAACGTC 57.200 33.333 0.00 0.00 0.00 4.34
6483 12300 8.113675 ACATTTTTGCTAAAACTTGCTAAAACG 58.886 29.630 8.22 4.88 42.74 3.60
6484 12301 9.767684 AACATTTTTGCTAAAACTTGCTAAAAC 57.232 25.926 8.22 0.00 42.74 2.43
6489 12306 7.254863 CCATCAACATTTTTGCTAAAACTTGCT 60.255 33.333 8.22 3.05 36.15 3.91
6493 12310 6.054295 TGCCATCAACATTTTTGCTAAAACT 58.946 32.000 8.22 0.00 36.15 2.66
6500 12317 8.571461 TTTTTAAATGCCATCAACATTTTTGC 57.429 26.923 7.00 0.00 43.42 3.68
6581 12399 9.227490 CGACTACATGTTCAAATGTTGTAAAAA 57.773 29.630 2.30 0.00 43.46 1.94
6645 12463 1.071568 GTGGCGTTTTTGAAATGCACG 60.072 47.619 16.63 6.31 0.00 5.34
6660 12478 2.126467 CATTTTTGTGTGGAAGTGGCG 58.874 47.619 0.00 0.00 0.00 5.69
6662 12480 3.181477 TGAGCATTTTTGTGTGGAAGTGG 60.181 43.478 0.00 0.00 0.00 4.00
6721 12539 3.078097 CGTGTGGGTGTTATCATTTGGA 58.922 45.455 0.00 0.00 0.00 3.53
6722 12540 2.817258 ACGTGTGGGTGTTATCATTTGG 59.183 45.455 0.00 0.00 0.00 3.28
6723 12541 3.820689 CACGTGTGGGTGTTATCATTTG 58.179 45.455 7.58 0.00 33.24 2.32
6737 12555 1.586042 GCTTTGTGCCACACGTGTG 60.586 57.895 36.13 36.13 45.23 3.82
6738 12556 1.590610 TTGCTTTGTGCCACACGTGT 61.591 50.000 17.22 17.22 42.00 4.49
6739 12557 1.138459 TTGCTTTGTGCCACACGTG 59.862 52.632 15.48 15.48 42.00 4.49
6740 12558 1.138671 GTTGCTTTGTGCCACACGT 59.861 52.632 0.00 0.00 42.00 4.49
6741 12559 1.138459 TGTTGCTTTGTGCCACACG 59.862 52.632 0.00 0.00 41.54 4.49
6744 12562 1.223417 GCCATGTTGCTTTGTGCCAC 61.223 55.000 0.00 0.00 42.00 5.01
6745 12563 1.069427 GCCATGTTGCTTTGTGCCA 59.931 52.632 0.00 0.00 42.00 4.92
6746 12564 1.668793 GGCCATGTTGCTTTGTGCC 60.669 57.895 0.00 0.00 42.00 5.01
6747 12565 0.532417 TTGGCCATGTTGCTTTGTGC 60.532 50.000 6.09 0.00 43.25 4.57
6748 12566 1.950828 TTTGGCCATGTTGCTTTGTG 58.049 45.000 6.09 0.00 0.00 3.33
6749 12567 2.287769 GTTTTGGCCATGTTGCTTTGT 58.712 42.857 6.09 0.00 0.00 2.83
6750 12568 1.261089 CGTTTTGGCCATGTTGCTTTG 59.739 47.619 6.09 0.00 0.00 2.77
6751 12569 1.580815 CGTTTTGGCCATGTTGCTTT 58.419 45.000 6.09 0.00 0.00 3.51
6752 12570 0.879839 GCGTTTTGGCCATGTTGCTT 60.880 50.000 6.09 0.00 0.00 3.91
6753 12571 1.300853 GCGTTTTGGCCATGTTGCT 60.301 52.632 6.09 0.00 0.00 3.91
6754 12572 3.243128 GCGTTTTGGCCATGTTGC 58.757 55.556 6.09 5.40 0.00 4.17
6762 12580 1.748493 TGATAATGGAGGCGTTTTGGC 59.252 47.619 0.00 0.00 45.27 4.52
6763 12581 4.097741 TGAATGATAATGGAGGCGTTTTGG 59.902 41.667 0.00 0.00 0.00 3.28
6764 12582 5.247507 TGAATGATAATGGAGGCGTTTTG 57.752 39.130 0.00 0.00 0.00 2.44
6765 12583 6.469782 AATGAATGATAATGGAGGCGTTTT 57.530 33.333 0.00 0.00 0.00 2.43
6766 12584 6.469782 AAATGAATGATAATGGAGGCGTTT 57.530 33.333 0.00 0.00 0.00 3.60
6767 12585 6.275335 CAAAATGAATGATAATGGAGGCGTT 58.725 36.000 0.00 0.00 0.00 4.84
6768 12586 5.737063 GCAAAATGAATGATAATGGAGGCGT 60.737 40.000 0.00 0.00 0.00 5.68
6769 12587 4.682860 GCAAAATGAATGATAATGGAGGCG 59.317 41.667 0.00 0.00 0.00 5.52
6770 12588 4.992951 GGCAAAATGAATGATAATGGAGGC 59.007 41.667 0.00 0.00 0.00 4.70
6771 12589 5.987347 GTGGCAAAATGAATGATAATGGAGG 59.013 40.000 0.00 0.00 0.00 4.30
6772 12590 6.575267 TGTGGCAAAATGAATGATAATGGAG 58.425 36.000 0.00 0.00 0.00 3.86
6773 12591 6.541934 TGTGGCAAAATGAATGATAATGGA 57.458 33.333 0.00 0.00 0.00 3.41
6774 12592 6.987404 TGATGTGGCAAAATGAATGATAATGG 59.013 34.615 0.00 0.00 0.00 3.16
6775 12593 8.426881 TTGATGTGGCAAAATGAATGATAATG 57.573 30.769 0.00 0.00 0.00 1.90
6776 12594 9.451002 TTTTGATGTGGCAAAATGAATGATAAT 57.549 25.926 0.00 0.00 41.38 1.28
6777 12595 8.719648 GTTTTGATGTGGCAAAATGAATGATAA 58.280 29.630 0.00 0.00 45.96 1.75
6778 12596 7.876582 TGTTTTGATGTGGCAAAATGAATGATA 59.123 29.630 0.00 0.00 45.96 2.15
6779 12597 6.711194 TGTTTTGATGTGGCAAAATGAATGAT 59.289 30.769 0.00 0.00 45.96 2.45
6780 12598 6.053650 TGTTTTGATGTGGCAAAATGAATGA 58.946 32.000 0.00 0.00 45.96 2.57
6781 12599 6.301687 TGTTTTGATGTGGCAAAATGAATG 57.698 33.333 0.00 0.00 45.96 2.67
6782 12600 8.670135 CATATGTTTTGATGTGGCAAAATGAAT 58.330 29.630 0.00 0.00 45.96 2.57
6783 12601 7.876582 TCATATGTTTTGATGTGGCAAAATGAA 59.123 29.630 1.90 0.00 45.96 2.57
6784 12602 7.331440 GTCATATGTTTTGATGTGGCAAAATGA 59.669 33.333 1.90 0.00 45.96 2.57
6785 12603 7.117956 TGTCATATGTTTTGATGTGGCAAAATG 59.882 33.333 1.90 0.00 45.96 2.32
6786 12604 7.160049 TGTCATATGTTTTGATGTGGCAAAAT 58.840 30.769 1.90 0.00 45.96 1.82
6787 12605 6.519382 TGTCATATGTTTTGATGTGGCAAAA 58.481 32.000 1.90 0.00 43.31 2.44
6788 12606 6.094193 TGTCATATGTTTTGATGTGGCAAA 57.906 33.333 1.90 0.00 36.08 3.68
6789 12607 5.718724 TGTCATATGTTTTGATGTGGCAA 57.281 34.783 1.90 0.00 27.45 4.52
6790 12608 5.418209 TGATGTCATATGTTTTGATGTGGCA 59.582 36.000 1.90 0.00 34.14 4.92
6791 12609 5.893687 TGATGTCATATGTTTTGATGTGGC 58.106 37.500 1.90 0.00 0.00 5.01
6792 12610 5.975344 GCTGATGTCATATGTTTTGATGTGG 59.025 40.000 1.90 0.00 0.00 4.17
6793 12611 5.679792 CGCTGATGTCATATGTTTTGATGTG 59.320 40.000 1.90 0.00 0.00 3.21
6794 12612 5.220912 CCGCTGATGTCATATGTTTTGATGT 60.221 40.000 1.90 0.00 0.00 3.06
6795 12613 5.209977 CCGCTGATGTCATATGTTTTGATG 58.790 41.667 1.90 0.00 0.00 3.07
6796 12614 4.276678 CCCGCTGATGTCATATGTTTTGAT 59.723 41.667 1.90 0.00 0.00 2.57
6797 12615 3.627123 CCCGCTGATGTCATATGTTTTGA 59.373 43.478 1.90 0.00 0.00 2.69
6798 12616 3.627123 TCCCGCTGATGTCATATGTTTTG 59.373 43.478 1.90 0.00 0.00 2.44
6799 12617 3.879295 CTCCCGCTGATGTCATATGTTTT 59.121 43.478 1.90 0.00 0.00 2.43
6800 12618 3.118261 ACTCCCGCTGATGTCATATGTTT 60.118 43.478 1.90 0.00 0.00 2.83
6801 12619 2.435805 ACTCCCGCTGATGTCATATGTT 59.564 45.455 1.90 0.00 0.00 2.71
6802 12620 2.036475 GACTCCCGCTGATGTCATATGT 59.964 50.000 1.90 0.00 0.00 2.29
6803 12621 2.298446 AGACTCCCGCTGATGTCATATG 59.702 50.000 0.00 0.00 32.41 1.78
6804 12622 2.603021 AGACTCCCGCTGATGTCATAT 58.397 47.619 0.00 0.00 32.41 1.78
6805 12623 2.073252 AGACTCCCGCTGATGTCATA 57.927 50.000 0.00 0.00 32.41 2.15
6806 12624 1.198713 AAGACTCCCGCTGATGTCAT 58.801 50.000 0.00 0.00 32.41 3.06
6807 12625 0.976641 AAAGACTCCCGCTGATGTCA 59.023 50.000 0.00 0.00 32.41 3.58
6808 12626 2.100605 AAAAGACTCCCGCTGATGTC 57.899 50.000 0.00 0.00 0.00 3.06
6809 12627 2.568623 AAAAAGACTCCCGCTGATGT 57.431 45.000 0.00 0.00 0.00 3.06
6810 12628 5.567138 AAATAAAAAGACTCCCGCTGATG 57.433 39.130 0.00 0.00 0.00 3.07
6811 12629 6.590234 AAAAATAAAAAGACTCCCGCTGAT 57.410 33.333 0.00 0.00 0.00 2.90
6812 12630 5.334569 CGAAAAATAAAAAGACTCCCGCTGA 60.335 40.000 0.00 0.00 0.00 4.26
6813 12631 4.851558 CGAAAAATAAAAAGACTCCCGCTG 59.148 41.667 0.00 0.00 0.00 5.18
6814 12632 4.082949 CCGAAAAATAAAAAGACTCCCGCT 60.083 41.667 0.00 0.00 0.00 5.52
6815 12633 4.163552 CCGAAAAATAAAAAGACTCCCGC 58.836 43.478 0.00 0.00 0.00 6.13
6816 12634 4.082949 AGCCGAAAAATAAAAAGACTCCCG 60.083 41.667 0.00 0.00 0.00 5.14
6817 12635 5.386958 AGCCGAAAAATAAAAAGACTCCC 57.613 39.130 0.00 0.00 0.00 4.30
6818 12636 8.806177 TTTAAGCCGAAAAATAAAAAGACTCC 57.194 30.769 0.00 0.00 0.00 3.85
6877 12695 9.602568 ACGGTTTTAATGGTAAAAACAGATTTT 57.397 25.926 15.17 0.00 44.07 1.82
6878 12696 9.251792 GACGGTTTTAATGGTAAAAACAGATTT 57.748 29.630 15.17 0.00 44.07 2.17
6879 12697 8.635328 AGACGGTTTTAATGGTAAAAACAGATT 58.365 29.630 15.17 3.92 44.07 2.40
6880 12698 8.173542 AGACGGTTTTAATGGTAAAAACAGAT 57.826 30.769 15.17 4.40 44.07 2.90
6881 12699 7.518689 CGAGACGGTTTTAATGGTAAAAACAGA 60.519 37.037 15.17 0.00 44.07 3.41
6882 12700 6.575942 CGAGACGGTTTTAATGGTAAAAACAG 59.424 38.462 12.05 10.55 44.07 3.16
6883 12701 6.259608 TCGAGACGGTTTTAATGGTAAAAACA 59.740 34.615 12.05 0.00 44.07 2.83
6884 12702 6.574832 GTCGAGACGGTTTTAATGGTAAAAAC 59.425 38.462 3.44 3.44 41.58 2.43
6885 12703 6.657888 GTCGAGACGGTTTTAATGGTAAAAA 58.342 36.000 0.00 0.00 40.13 1.94
6886 12704 6.226988 GTCGAGACGGTTTTAATGGTAAAA 57.773 37.500 0.00 0.00 36.95 1.52
6887 12705 5.844301 GTCGAGACGGTTTTAATGGTAAA 57.156 39.130 0.00 0.00 0.00 2.01
6902 12720 4.477780 AGTTTTGAAGATCTCGTCGAGAC 58.522 43.478 26.46 18.95 41.76 3.36
6903 12721 4.768130 AGTTTTGAAGATCTCGTCGAGA 57.232 40.909 26.15 26.15 43.20 4.04
6904 12722 5.870444 TCTAGTTTTGAAGATCTCGTCGAG 58.130 41.667 16.33 16.33 0.00 4.04
6905 12723 5.874895 TCTAGTTTTGAAGATCTCGTCGA 57.125 39.130 0.00 0.00 0.00 4.20
6906 12724 5.683743 GGATCTAGTTTTGAAGATCTCGTCG 59.316 44.000 11.05 0.00 37.77 5.12
6907 12725 5.980715 GGGATCTAGTTTTGAAGATCTCGTC 59.019 44.000 11.05 0.00 37.77 4.20
6908 12726 5.422331 TGGGATCTAGTTTTGAAGATCTCGT 59.578 40.000 11.05 0.00 40.21 4.18
6909 12727 5.907207 TGGGATCTAGTTTTGAAGATCTCG 58.093 41.667 11.05 0.00 40.21 4.04
6911 12729 9.790344 CAATATGGGATCTAGTTTTGAAGATCT 57.210 33.333 11.05 0.00 37.77 2.75
6912 12730 9.784531 TCAATATGGGATCTAGTTTTGAAGATC 57.215 33.333 4.15 4.15 37.15 2.75
6924 12742 9.435688 CGTTGAAACATATCAATATGGGATCTA 57.564 33.333 13.18 4.43 43.38 1.98
6925 12743 8.156820 TCGTTGAAACATATCAATATGGGATCT 58.843 33.333 13.18 0.00 43.38 2.75
6926 12744 8.322906 TCGTTGAAACATATCAATATGGGATC 57.677 34.615 13.18 8.93 43.38 3.36
6927 12745 8.690203 TTCGTTGAAACATATCAATATGGGAT 57.310 30.769 13.18 1.05 43.38 3.85
6928 12746 8.512966 TTTCGTTGAAACATATCAATATGGGA 57.487 30.769 13.18 0.00 43.38 4.37
6929 12747 9.748708 AATTTCGTTGAAACATATCAATATGGG 57.251 29.630 13.18 0.00 43.38 4.00
6956 12774 5.355350 CACCATGGCAACTTTTGGTTAAAAA 59.645 36.000 13.04 0.00 41.17 1.94
6957 12775 4.878397 CACCATGGCAACTTTTGGTTAAAA 59.122 37.500 13.04 0.00 41.17 1.52
6958 12776 4.080863 ACACCATGGCAACTTTTGGTTAAA 60.081 37.500 13.04 0.00 41.17 1.52
6959 12777 3.452627 ACACCATGGCAACTTTTGGTTAA 59.547 39.130 13.04 0.00 41.17 2.01
6960 12778 3.034635 ACACCATGGCAACTTTTGGTTA 58.965 40.909 13.04 0.00 41.17 2.85
6961 12779 1.836802 ACACCATGGCAACTTTTGGTT 59.163 42.857 13.04 0.00 41.17 3.67
6962 12780 1.494960 ACACCATGGCAACTTTTGGT 58.505 45.000 13.04 3.89 42.97 3.67
6963 12781 2.618442 AACACCATGGCAACTTTTGG 57.382 45.000 13.04 2.56 37.68 3.28
6964 12782 4.269844 GTGTAAACACCATGGCAACTTTTG 59.730 41.667 13.04 2.84 40.85 2.44
6965 12783 4.438148 GTGTAAACACCATGGCAACTTTT 58.562 39.130 13.04 6.75 40.85 2.27
6966 12784 4.053469 GTGTAAACACCATGGCAACTTT 57.947 40.909 13.04 6.70 40.85 2.66
6967 12785 3.726291 GTGTAAACACCATGGCAACTT 57.274 42.857 13.04 2.85 40.85 2.66
6974 12792 6.715522 TGGCAACTACAGTGTAAACACCATG 61.716 44.000 9.57 5.44 42.53 3.66
6975 12793 4.687494 TGGCAACTACAGTGTAAACACCAT 60.687 41.667 9.57 1.35 42.53 3.55
6976 12794 3.370633 TGGCAACTACAGTGTAAACACCA 60.371 43.478 9.57 7.44 42.53 4.17
6977 12795 3.207778 TGGCAACTACAGTGTAAACACC 58.792 45.455 9.57 5.00 42.53 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.