Multiple sequence alignment - TraesCS3B01G373000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G373000 chr3B 100.000 5668 0 0 1 5668 585828361 585834028 0.000000e+00 10467.0
1 TraesCS3B01G373000 chr3B 87.805 820 80 9 3927 4743 586049135 586049937 0.000000e+00 942.0
2 TraesCS3B01G373000 chr3B 91.589 428 30 5 2340 2766 585848176 585848598 2.280000e-163 586.0
3 TraesCS3B01G373000 chr3B 92.149 242 18 1 2006 2247 585843188 585843428 1.960000e-89 340.0
4 TraesCS3B01G373000 chr3B 84.451 328 44 4 3606 3933 585976644 585976964 3.300000e-82 316.0
5 TraesCS3B01G373000 chr3D 95.142 2882 103 17 2040 4915 446489701 446492551 0.000000e+00 4512.0
6 TraesCS3B01G373000 chr3D 85.842 1674 96 48 376 2004 446488125 446489702 0.000000e+00 1648.0
7 TraesCS3B01G373000 chr3D 89.641 1226 85 18 2590 3813 446760393 446761578 0.000000e+00 1522.0
8 TraesCS3B01G373000 chr3D 88.278 273 5 7 86 357 446487891 446488137 9.230000e-78 302.0
9 TraesCS3B01G373000 chr3D 100.000 34 0 0 4914 4947 446492795 446492828 4.740000e-06 63.9
10 TraesCS3B01G373000 chr3A 94.729 2068 63 14 2040 4104 588438229 588440253 0.000000e+00 3173.0
11 TraesCS3B01G373000 chr3A 86.505 2097 119 68 1 2004 588436205 588438230 0.000000e+00 2154.0
12 TraesCS3B01G373000 chr3A 95.950 716 27 2 4200 4915 588440283 588440996 0.000000e+00 1160.0
13 TraesCS3B01G373000 chr3A 93.536 526 29 4 2590 3113 588627725 588628247 0.000000e+00 778.0
14 TraesCS3B01G373000 chr3A 84.914 696 66 15 3118 3813 588630510 588631166 0.000000e+00 667.0
15 TraesCS3B01G373000 chr3A 97.368 38 1 0 4914 4951 588441203 588441240 1.320000e-06 65.8
16 TraesCS3B01G373000 chr3A 100.000 28 0 0 4132 4159 588440255 588440282 1.000000e-02 52.8
17 TraesCS3B01G373000 chr6B 86.059 581 68 10 5098 5668 151215209 151215786 3.750000e-171 612.0
18 TraesCS3B01G373000 chr4A 86.059 581 68 10 5098 5668 94978311 94978888 3.750000e-171 612.0
19 TraesCS3B01G373000 chr4A 85.935 583 64 13 5098 5668 733340862 733340286 1.750000e-169 606.0
20 TraesCS3B01G373000 chr2B 86.501 563 67 6 5114 5668 87168301 87168862 1.350000e-170 610.0
21 TraesCS3B01G373000 chr2B 86.111 576 67 10 5098 5663 95792354 95792926 4.860000e-170 608.0
22 TraesCS3B01G373000 chr5D 85.935 583 65 14 5098 5668 472426434 472425857 1.750000e-169 606.0
23 TraesCS3B01G373000 chr1B 85.886 581 69 10 5098 5668 57805040 57805617 1.750000e-169 606.0
24 TraesCS3B01G373000 chrUn 85.714 581 70 10 5098 5668 68801244 68800667 8.130000e-168 601.0
25 TraesCS3B01G373000 chr1D 85.714 581 70 10 5098 5668 418520284 418519707 8.130000e-168 601.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G373000 chr3B 585828361 585834028 5667 False 10467.000 10467 100.0000 1 5668 1 chr3B.!!$F1 5667
1 TraesCS3B01G373000 chr3B 586049135 586049937 802 False 942.000 942 87.8050 3927 4743 1 chr3B.!!$F5 816
2 TraesCS3B01G373000 chr3D 446487891 446492828 4937 False 1631.475 4512 92.3155 86 4947 4 chr3D.!!$F2 4861
3 TraesCS3B01G373000 chr3D 446760393 446761578 1185 False 1522.000 1522 89.6410 2590 3813 1 chr3D.!!$F1 1223
4 TraesCS3B01G373000 chr3A 588436205 588441240 5035 False 1321.120 3173 94.9104 1 4951 5 chr3A.!!$F1 4950
5 TraesCS3B01G373000 chr3A 588627725 588631166 3441 False 722.500 778 89.2250 2590 3813 2 chr3A.!!$F2 1223
6 TraesCS3B01G373000 chr6B 151215209 151215786 577 False 612.000 612 86.0590 5098 5668 1 chr6B.!!$F1 570
7 TraesCS3B01G373000 chr4A 94978311 94978888 577 False 612.000 612 86.0590 5098 5668 1 chr4A.!!$F1 570
8 TraesCS3B01G373000 chr4A 733340286 733340862 576 True 606.000 606 85.9350 5098 5668 1 chr4A.!!$R1 570
9 TraesCS3B01G373000 chr2B 87168301 87168862 561 False 610.000 610 86.5010 5114 5668 1 chr2B.!!$F1 554
10 TraesCS3B01G373000 chr2B 95792354 95792926 572 False 608.000 608 86.1110 5098 5663 1 chr2B.!!$F2 565
11 TraesCS3B01G373000 chr5D 472425857 472426434 577 True 606.000 606 85.9350 5098 5668 1 chr5D.!!$R1 570
12 TraesCS3B01G373000 chr1B 57805040 57805617 577 False 606.000 606 85.8860 5098 5668 1 chr1B.!!$F1 570
13 TraesCS3B01G373000 chrUn 68800667 68801244 577 True 601.000 601 85.7140 5098 5668 1 chrUn.!!$R1 570
14 TraesCS3B01G373000 chr1D 418519707 418520284 577 True 601.000 601 85.7140 5098 5668 1 chr1D.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 453 0.038526 AGGCGAAGACACCAGTAACG 60.039 55.0 0.00 0.0 39.87 3.18 F
844 901 0.179153 GCTCTTGGCGCTTTGATTCC 60.179 55.0 7.64 0.0 0.00 3.01 F
905 963 0.249676 TGGTGATTTAGCGCGGGTTA 59.750 50.0 8.83 0.0 0.00 2.85 F
2274 2404 0.392998 ATTGTGATGGACGCCAGACC 60.393 55.0 4.90 0.0 36.75 3.85 F
2974 3104 0.176680 AGTACGCTGGGATGCTTCAG 59.823 55.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2394 0.249911 AGACAACAAGGTCTGGCGTC 60.250 55.000 0.00 0.00 46.02 5.19 R
2727 2857 3.358707 TCACAGCTTCAAGTGCATTTG 57.641 42.857 15.31 15.31 35.76 2.32 R
2920 3050 4.079028 CACGAACACGGTCAAATTTATCG 58.921 43.478 0.00 0.00 0.00 2.92 R
3185 5573 1.434555 CACGTAATCAAGCACCCGAA 58.565 50.000 0.00 0.00 0.00 4.30 R
4981 7621 0.107831 AAAAGACGCCACTGCACCTA 59.892 50.000 0.00 0.00 37.32 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.597637 CAGGTGGTCGGCTATTAGCG 60.598 60.000 9.50 5.56 43.62 4.26
39 40 0.754217 AGGTGGTCGGCTATTAGCGA 60.754 55.000 9.50 7.67 43.62 4.93
65 66 2.675371 CCGGTTCTCCTTTCCCCC 59.325 66.667 0.00 0.00 0.00 5.40
66 67 2.228480 CCGGTTCTCCTTTCCCCCA 61.228 63.158 0.00 0.00 0.00 4.96
67 68 1.299976 CGGTTCTCCTTTCCCCCAG 59.700 63.158 0.00 0.00 0.00 4.45
68 69 1.198759 CGGTTCTCCTTTCCCCCAGA 61.199 60.000 0.00 0.00 0.00 3.86
69 70 1.073098 GGTTCTCCTTTCCCCCAGAA 58.927 55.000 0.00 0.00 0.00 3.02
71 72 2.158370 GGTTCTCCTTTCCCCCAGAAAA 60.158 50.000 0.00 0.00 43.84 2.29
157 181 2.119495 AGAATATCCAACTCACGGCCT 58.881 47.619 0.00 0.00 0.00 5.19
159 183 0.389391 ATATCCAACTCACGGCCTCG 59.611 55.000 0.00 0.00 43.02 4.63
160 184 2.292794 TATCCAACTCACGGCCTCGC 62.293 60.000 0.00 0.00 40.63 5.03
200 227 0.941542 TCACGCCCGAGTTTTCAAAG 59.058 50.000 0.00 0.00 0.00 2.77
201 228 0.040425 CACGCCCGAGTTTTCAAAGG 60.040 55.000 0.00 0.00 0.00 3.11
202 229 0.179040 ACGCCCGAGTTTTCAAAGGA 60.179 50.000 0.00 0.00 0.00 3.36
206 242 2.226674 GCCCGAGTTTTCAAAGGAAGAG 59.773 50.000 0.00 0.00 33.82 2.85
328 364 1.269569 GGGGCCGCAATATAAAACTGC 60.270 52.381 16.21 0.00 0.00 4.40
358 412 3.350219 TCTACCAAATCAGGCCAAGAC 57.650 47.619 5.01 0.00 0.00 3.01
359 413 2.642311 TCTACCAAATCAGGCCAAGACA 59.358 45.455 5.01 0.00 0.00 3.41
360 414 2.380064 ACCAAATCAGGCCAAGACAA 57.620 45.000 5.01 0.00 0.00 3.18
361 415 1.963515 ACCAAATCAGGCCAAGACAAC 59.036 47.619 5.01 0.00 0.00 3.32
362 416 2.242043 CCAAATCAGGCCAAGACAACT 58.758 47.619 5.01 0.00 0.00 3.16
363 417 2.229784 CCAAATCAGGCCAAGACAACTC 59.770 50.000 5.01 0.00 0.00 3.01
364 418 2.886523 CAAATCAGGCCAAGACAACTCA 59.113 45.455 5.01 0.00 0.00 3.41
365 419 2.957402 ATCAGGCCAAGACAACTCAA 57.043 45.000 5.01 0.00 0.00 3.02
366 420 2.727123 TCAGGCCAAGACAACTCAAA 57.273 45.000 5.01 0.00 0.00 2.69
367 421 3.011566 TCAGGCCAAGACAACTCAAAA 57.988 42.857 5.01 0.00 0.00 2.44
368 422 3.360867 TCAGGCCAAGACAACTCAAAAA 58.639 40.909 5.01 0.00 0.00 1.94
393 447 2.270352 AAAATCAGGCGAAGACACCA 57.730 45.000 0.00 0.00 39.87 4.17
399 453 0.038526 AGGCGAAGACACCAGTAACG 60.039 55.000 0.00 0.00 39.87 3.18
404 458 1.617357 GAAGACACCAGTAACGTCCCT 59.383 52.381 0.00 0.00 0.00 4.20
431 485 4.570663 CGATGGCCCGACTCGACC 62.571 72.222 0.00 1.78 34.41 4.79
487 541 5.148502 TCTTGGCCAACACCCTAAAATTAA 58.851 37.500 16.05 0.00 0.00 1.40
639 696 1.600916 GCAAAGGTGAGAACGGCCT 60.601 57.895 0.00 0.00 0.00 5.19
651 708 0.394488 AACGGCCTCTCTCGATCTCA 60.394 55.000 0.00 0.00 0.00 3.27
676 733 2.676265 CCCCTCCCCCGTTCGAAAT 61.676 63.158 0.00 0.00 0.00 2.17
681 738 1.217244 CCCCCGTTCGAAATCTCGT 59.783 57.895 0.00 0.00 45.62 4.18
683 740 0.804933 CCCCGTTCGAAATCTCGTCC 60.805 60.000 0.00 0.00 45.62 4.79
690 747 4.781528 CGTTCGAAATCTCGTCCAAATTTC 59.218 41.667 0.00 0.00 45.62 2.17
692 749 6.371389 GTTCGAAATCTCGTCCAAATTTCTT 58.629 36.000 0.00 0.00 45.62 2.52
744 801 1.966451 CCGGTCAGGCCTTGTTCAC 60.966 63.158 0.00 0.00 34.25 3.18
762 819 7.737972 TGTTCACCGAATCTGAATTTTAGAA 57.262 32.000 0.00 0.00 30.46 2.10
800 857 7.896274 CGGTGTTTGTCGTTTGATTAGTTATAG 59.104 37.037 0.00 0.00 0.00 1.31
844 901 0.179153 GCTCTTGGCGCTTTGATTCC 60.179 55.000 7.64 0.00 0.00 3.01
880 937 1.471487 TTCGATTGAGATGCGCGTCG 61.471 55.000 23.15 11.62 0.00 5.12
902 960 0.532862 ATCTGGTGATTTAGCGCGGG 60.533 55.000 8.83 0.00 0.00 6.13
903 961 1.449601 CTGGTGATTTAGCGCGGGT 60.450 57.895 8.83 0.00 0.00 5.28
904 962 1.003112 TGGTGATTTAGCGCGGGTT 60.003 52.632 8.83 0.00 0.00 4.11
905 963 0.249676 TGGTGATTTAGCGCGGGTTA 59.750 50.000 8.83 0.00 0.00 2.85
906 964 1.338864 TGGTGATTTAGCGCGGGTTAA 60.339 47.619 8.83 4.66 0.00 2.01
918 976 1.333435 GCGGGTTAATTAATGACGCCG 60.333 52.381 22.51 16.06 39.66 6.46
919 977 1.935199 CGGGTTAATTAATGACGCCGT 59.065 47.619 0.31 0.00 0.00 5.68
920 978 3.122297 CGGGTTAATTAATGACGCCGTA 58.878 45.455 0.31 0.00 0.00 4.02
921 979 3.742369 CGGGTTAATTAATGACGCCGTAT 59.258 43.478 0.31 0.00 0.00 3.06
922 980 4.376615 CGGGTTAATTAATGACGCCGTATG 60.377 45.833 0.31 2.83 0.00 2.39
923 981 4.460505 GGTTAATTAATGACGCCGTATGC 58.539 43.478 0.31 0.00 0.00 3.14
924 982 4.212636 GGTTAATTAATGACGCCGTATGCT 59.787 41.667 0.31 0.00 38.05 3.79
925 983 5.277634 GGTTAATTAATGACGCCGTATGCTT 60.278 40.000 0.31 0.00 38.05 3.91
926 984 3.878086 ATTAATGACGCCGTATGCTTG 57.122 42.857 0.00 0.00 38.05 4.01
927 985 0.934496 TAATGACGCCGTATGCTTGC 59.066 50.000 0.00 0.00 38.05 4.01
928 986 1.714899 AATGACGCCGTATGCTTGCC 61.715 55.000 0.00 0.00 38.05 4.52
929 987 2.817834 GACGCCGTATGCTTGCCA 60.818 61.111 0.00 0.00 38.05 4.92
930 988 3.095898 GACGCCGTATGCTTGCCAC 62.096 63.158 0.00 0.00 38.05 5.01
931 989 2.819595 CGCCGTATGCTTGCCACT 60.820 61.111 0.00 0.00 38.05 4.00
932 990 2.813179 CGCCGTATGCTTGCCACTC 61.813 63.158 0.00 0.00 38.05 3.51
933 991 1.450312 GCCGTATGCTTGCCACTCT 60.450 57.895 0.00 0.00 36.87 3.24
934 992 1.709147 GCCGTATGCTTGCCACTCTG 61.709 60.000 0.00 0.00 36.87 3.35
1116 1186 1.206132 CCCGACCAGTACAACTGCATA 59.794 52.381 1.43 0.00 44.63 3.14
1200 1291 8.761575 ATCGTTTTACCTTCGTCTGTTTAATA 57.238 30.769 0.00 0.00 0.00 0.98
1247 1338 7.535139 TCCTTTTGTCGGATTTAATGTGATTC 58.465 34.615 0.00 0.00 0.00 2.52
1271 1366 5.747675 CAGTCACATACTTCTGCTGTAGATG 59.252 44.000 4.25 7.02 35.76 2.90
1326 1421 4.455877 TGAGCATGATGATGAATCTGATGC 59.544 41.667 0.00 0.00 41.64 3.91
1390 1499 3.060895 GCAATCGTAACTAGTGCACACTC 59.939 47.826 21.04 2.26 42.54 3.51
1391 1500 2.606717 TCGTAACTAGTGCACACTCG 57.393 50.000 21.04 13.84 42.54 4.18
1392 1501 1.875514 TCGTAACTAGTGCACACTCGT 59.124 47.619 21.04 4.24 42.54 4.18
1393 1502 1.976728 CGTAACTAGTGCACACTCGTG 59.023 52.381 21.04 4.54 46.56 4.35
1395 1504 3.364267 CGTAACTAGTGCACACTCGTGTA 60.364 47.826 21.04 0.00 45.50 2.90
1396 1505 3.720949 AACTAGTGCACACTCGTGTAA 57.279 42.857 21.04 0.00 45.50 2.41
1398 1507 4.252971 ACTAGTGCACACTCGTGTAATT 57.747 40.909 21.04 0.00 45.50 1.40
1399 1508 4.628074 ACTAGTGCACACTCGTGTAATTT 58.372 39.130 21.04 0.00 45.50 1.82
1400 1509 5.054477 ACTAGTGCACACTCGTGTAATTTT 58.946 37.500 21.04 0.00 45.50 1.82
1401 1510 4.468095 AGTGCACACTCGTGTAATTTTC 57.532 40.909 21.04 0.00 45.50 2.29
1402 1511 3.059868 AGTGCACACTCGTGTAATTTTCG 60.060 43.478 21.04 0.00 45.50 3.46
1463 1576 5.783111 GTTGCATCCAACCTGAACTAATTT 58.217 37.500 0.00 0.00 44.37 1.82
1527 1640 5.710513 AACTTTGCTTGAGATGTGCAATA 57.289 34.783 0.00 0.00 44.55 1.90
1729 1842 6.636705 TGTATTCTTTGCTGTTAGTACCGAT 58.363 36.000 0.00 0.00 0.00 4.18
1776 1903 5.461526 TCTGATACAGTTCTGACTTCAACG 58.538 41.667 6.83 0.00 32.54 4.10
1819 1946 2.742053 TGGTCTTCTAGTTTTGCATCGC 59.258 45.455 0.00 0.00 0.00 4.58
2002 2132 5.009911 TCACTTGTATGCTGCTTTCACATTT 59.990 36.000 0.00 0.00 0.00 2.32
2003 2133 5.693104 CACTTGTATGCTGCTTTCACATTTT 59.307 36.000 0.00 0.00 0.00 1.82
2004 2134 5.922544 ACTTGTATGCTGCTTTCACATTTTC 59.077 36.000 0.00 0.00 0.00 2.29
2005 2135 5.450592 TGTATGCTGCTTTCACATTTTCA 57.549 34.783 0.00 0.00 0.00 2.69
2006 2136 5.221880 TGTATGCTGCTTTCACATTTTCAC 58.778 37.500 0.00 0.00 0.00 3.18
2007 2137 4.595762 ATGCTGCTTTCACATTTTCACT 57.404 36.364 0.00 0.00 0.00 3.41
2008 2138 4.389890 TGCTGCTTTCACATTTTCACTT 57.610 36.364 0.00 0.00 0.00 3.16
2009 2139 4.757594 TGCTGCTTTCACATTTTCACTTT 58.242 34.783 0.00 0.00 0.00 2.66
2010 2140 5.177326 TGCTGCTTTCACATTTTCACTTTT 58.823 33.333 0.00 0.00 0.00 2.27
2011 2141 5.063691 TGCTGCTTTCACATTTTCACTTTTG 59.936 36.000 0.00 0.00 0.00 2.44
2012 2142 5.063817 GCTGCTTTCACATTTTCACTTTTGT 59.936 36.000 0.00 0.00 0.00 2.83
2013 2143 6.255453 GCTGCTTTCACATTTTCACTTTTGTA 59.745 34.615 0.00 0.00 0.00 2.41
2014 2144 7.042523 GCTGCTTTCACATTTTCACTTTTGTAT 60.043 33.333 0.00 0.00 0.00 2.29
2015 2145 8.129161 TGCTTTCACATTTTCACTTTTGTATG 57.871 30.769 0.00 0.00 0.00 2.39
2016 2146 7.065283 GCTTTCACATTTTCACTTTTGTATGC 58.935 34.615 0.00 0.00 0.00 3.14
2017 2147 7.042523 GCTTTCACATTTTCACTTTTGTATGCT 60.043 33.333 0.00 0.00 0.00 3.79
2018 2148 9.462174 CTTTCACATTTTCACTTTTGTATGCTA 57.538 29.630 0.00 0.00 0.00 3.49
2019 2149 9.979578 TTTCACATTTTCACTTTTGTATGCTAT 57.020 25.926 0.00 0.00 0.00 2.97
2030 2160 9.450807 CACTTTTGTATGCTATAACAATTAGCC 57.549 33.333 0.66 0.00 41.10 3.93
2031 2161 9.184523 ACTTTTGTATGCTATAACAATTAGCCA 57.815 29.630 0.66 0.00 41.10 4.75
2036 2166 9.348476 TGTATGCTATAACAATTAGCCATTTCA 57.652 29.630 0.66 0.00 41.10 2.69
2037 2167 9.831737 GTATGCTATAACAATTAGCCATTTCAG 57.168 33.333 0.66 0.00 41.10 3.02
2038 2168 8.696043 ATGCTATAACAATTAGCCATTTCAGA 57.304 30.769 0.66 0.00 41.10 3.27
2264 2394 4.913335 AGCTAAGCAATCATTGTGATGG 57.087 40.909 0.00 0.00 37.15 3.51
2274 2404 0.392998 ATTGTGATGGACGCCAGACC 60.393 55.000 4.90 0.00 36.75 3.85
2278 2408 1.296715 GATGGACGCCAGACCTTGT 59.703 57.895 4.90 0.00 36.75 3.16
2548 2678 2.574006 TGGACCGCTACGAGGTATAT 57.426 50.000 0.00 0.00 43.01 0.86
2549 2679 3.701205 TGGACCGCTACGAGGTATATA 57.299 47.619 0.00 0.00 43.01 0.86
2727 2857 3.381590 GGAGAAGCACCATACAAATTCCC 59.618 47.826 0.00 0.00 0.00 3.97
2758 2888 4.527509 TGAAGCTGTGAAGACTCTAAGG 57.472 45.455 0.00 0.00 0.00 2.69
2920 3050 5.444663 AAGCACTTGAGTTTCCTGATTTC 57.555 39.130 0.00 0.00 0.00 2.17
2974 3104 0.176680 AGTACGCTGGGATGCTTCAG 59.823 55.000 0.00 0.00 0.00 3.02
3126 5514 7.833682 TCCATTCTATTTGTTCCAATGCTAAGA 59.166 33.333 0.00 0.00 0.00 2.10
3141 5529 4.127171 TGCTAAGACACTTGGTTCTTCAC 58.873 43.478 0.00 0.00 0.00 3.18
3185 5573 7.437713 TTCCTGGTCATTAGTTAGTCATGAT 57.562 36.000 0.00 0.00 29.78 2.45
3202 5590 2.276201 TGATTCGGGTGCTTGATTACG 58.724 47.619 0.00 0.00 0.00 3.18
3214 5602 5.121768 GTGCTTGATTACGTGGAACATTACT 59.878 40.000 0.00 0.00 44.52 2.24
3282 5670 7.332430 TCAAGTACTGGGTAAAATGTGAATACG 59.668 37.037 0.00 0.00 0.00 3.06
3308 5697 7.253883 GCAAGTCAGATGCTTATTGTATTTTGC 60.254 37.037 0.00 0.00 40.64 3.68
3311 5700 5.893255 TCAGATGCTTATTGTATTTTGCCCT 59.107 36.000 0.00 0.00 0.00 5.19
3339 5728 9.701098 AGCTTTATATTTGTTGCCAATCATATG 57.299 29.630 0.00 0.00 0.00 1.78
3354 5743 7.201548 GCCAATCATATGTCAAATCACCAAAAC 60.202 37.037 1.90 0.00 0.00 2.43
3519 5909 4.977739 TGACCTGATGATTCCCCTATTCTT 59.022 41.667 0.00 0.00 0.00 2.52
3536 5926 7.281100 CCCTATTCTTATAATTGCGAGGGAATC 59.719 40.741 11.54 0.00 43.30 2.52
3813 6203 3.225104 AGGCACTTGAAATTGCTGAGAA 58.775 40.909 5.51 0.00 38.85 2.87
3861 6251 5.183331 GGAAGTTTGACCAGGTAAGGAATTC 59.817 44.000 0.00 0.00 0.00 2.17
3899 6289 1.229145 CATCCTTGGTTTGCCCCCA 60.229 57.895 0.00 0.00 0.00 4.96
4047 6437 5.567138 AGGTGAGAACAAACAAGAAACTG 57.433 39.130 0.00 0.00 0.00 3.16
4106 6496 8.548025 TCTATATCCTGAAAGTTGAAATGGTGA 58.452 33.333 0.00 0.00 0.00 4.02
4245 6637 8.116026 ACTTATCTGTATCATTGGTTTCCCTTT 58.884 33.333 0.00 0.00 0.00 3.11
4349 6741 1.808411 TAAGAGGAACAAAGCTGGCG 58.192 50.000 0.00 0.00 0.00 5.69
4440 6832 0.455005 GCCTTTGATGCTCTTCCTGC 59.545 55.000 0.00 0.00 0.00 4.85
4454 6846 5.703876 CTCTTCCTGCAAGACCAATTTTAC 58.296 41.667 0.00 0.00 36.08 2.01
4795 7190 2.939022 GCACGCTTGCTCGAACTT 59.061 55.556 8.12 0.00 46.17 2.66
4867 7262 4.810191 TTGTAATTTGGGGTATTGCCAC 57.190 40.909 0.00 0.00 42.43 5.01
4951 7591 4.803426 CCTCAGCGGGCGACTGTC 62.803 72.222 0.00 0.00 39.64 3.51
4952 7592 4.056125 CTCAGCGGGCGACTGTCA 62.056 66.667 8.73 0.00 39.64 3.58
4953 7593 3.978723 CTCAGCGGGCGACTGTCAG 62.979 68.421 8.73 0.00 39.64 3.51
4954 7594 4.363990 CAGCGGGCGACTGTCAGT 62.364 66.667 4.81 4.81 39.64 3.41
4955 7595 4.363990 AGCGGGCGACTGTCAGTG 62.364 66.667 11.04 4.22 39.64 3.66
4957 7597 4.662961 CGGGCGACTGTCAGTGCA 62.663 66.667 11.04 0.00 0.00 4.57
4958 7598 2.740055 GGGCGACTGTCAGTGCAG 60.740 66.667 11.04 11.51 41.92 4.41
4963 7603 2.280389 ACTGTCAGTGCAGTGGCG 60.280 61.111 20.63 16.84 46.72 5.69
4964 7604 2.280389 CTGTCAGTGCAGTGGCGT 60.280 61.111 20.63 0.00 45.35 5.68
4965 7605 1.889105 CTGTCAGTGCAGTGGCGTT 60.889 57.895 20.63 0.00 45.35 4.84
4966 7606 1.439353 CTGTCAGTGCAGTGGCGTTT 61.439 55.000 20.63 0.00 45.35 3.60
4967 7607 1.029408 TGTCAGTGCAGTGGCGTTTT 61.029 50.000 20.63 0.00 45.35 2.43
4968 7608 0.100503 GTCAGTGCAGTGGCGTTTTT 59.899 50.000 21.21 0.00 45.35 1.94
4993 7633 2.113860 TTTGAGATAGGTGCAGTGGC 57.886 50.000 0.00 0.00 41.68 5.01
4994 7634 0.108186 TTGAGATAGGTGCAGTGGCG 60.108 55.000 0.00 0.00 45.35 5.69
4995 7635 1.257750 TGAGATAGGTGCAGTGGCGT 61.258 55.000 0.00 0.00 45.35 5.68
4996 7636 0.528684 GAGATAGGTGCAGTGGCGTC 60.529 60.000 0.00 0.00 45.35 5.19
4997 7637 0.972983 AGATAGGTGCAGTGGCGTCT 60.973 55.000 0.00 0.00 45.35 4.18
4998 7638 0.108138 GATAGGTGCAGTGGCGTCTT 60.108 55.000 0.00 0.00 45.35 3.01
4999 7639 0.324943 ATAGGTGCAGTGGCGTCTTT 59.675 50.000 0.00 0.00 45.35 2.52
5000 7640 0.107831 TAGGTGCAGTGGCGTCTTTT 59.892 50.000 0.00 0.00 45.35 2.27
5001 7641 1.008538 GGTGCAGTGGCGTCTTTTG 60.009 57.895 0.00 0.00 45.35 2.44
5002 7642 1.444119 GGTGCAGTGGCGTCTTTTGA 61.444 55.000 0.00 0.00 45.35 2.69
5003 7643 0.317020 GTGCAGTGGCGTCTTTTGAC 60.317 55.000 0.00 0.00 45.35 3.18
5014 7654 3.675467 GTCTTTTGACGTGCTCTTGTT 57.325 42.857 0.00 0.00 39.89 2.83
5015 7655 4.789095 GTCTTTTGACGTGCTCTTGTTA 57.211 40.909 0.00 0.00 39.89 2.41
5016 7656 4.762809 GTCTTTTGACGTGCTCTTGTTAG 58.237 43.478 0.00 0.00 39.89 2.34
5017 7657 4.270325 GTCTTTTGACGTGCTCTTGTTAGT 59.730 41.667 0.00 0.00 39.89 2.24
5018 7658 4.270084 TCTTTTGACGTGCTCTTGTTAGTG 59.730 41.667 0.00 0.00 0.00 2.74
5019 7659 2.882927 TGACGTGCTCTTGTTAGTGT 57.117 45.000 0.00 0.00 0.00 3.55
5020 7660 2.469826 TGACGTGCTCTTGTTAGTGTG 58.530 47.619 0.00 0.00 0.00 3.82
5021 7661 2.159156 TGACGTGCTCTTGTTAGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
5022 7662 2.201732 ACGTGCTCTTGTTAGTGTGTG 58.798 47.619 0.00 0.00 0.00 3.82
5023 7663 2.201732 CGTGCTCTTGTTAGTGTGTGT 58.798 47.619 0.00 0.00 0.00 3.72
5024 7664 2.033747 CGTGCTCTTGTTAGTGTGTGTG 60.034 50.000 0.00 0.00 0.00 3.82
5025 7665 3.194861 GTGCTCTTGTTAGTGTGTGTGA 58.805 45.455 0.00 0.00 0.00 3.58
5026 7666 3.001330 GTGCTCTTGTTAGTGTGTGTGAC 59.999 47.826 0.00 0.00 0.00 3.67
5027 7667 2.218759 GCTCTTGTTAGTGTGTGTGACG 59.781 50.000 0.00 0.00 0.00 4.35
5028 7668 2.794910 CTCTTGTTAGTGTGTGTGACGG 59.205 50.000 0.00 0.00 0.00 4.79
5029 7669 2.166870 TCTTGTTAGTGTGTGTGACGGT 59.833 45.455 0.00 0.00 0.00 4.83
5030 7670 1.929230 TGTTAGTGTGTGTGACGGTG 58.071 50.000 0.00 0.00 0.00 4.94
5031 7671 1.205179 TGTTAGTGTGTGTGACGGTGT 59.795 47.619 0.00 0.00 0.00 4.16
5032 7672 1.591158 GTTAGTGTGTGTGACGGTGTG 59.409 52.381 0.00 0.00 0.00 3.82
5033 7673 1.104630 TAGTGTGTGTGACGGTGTGA 58.895 50.000 0.00 0.00 0.00 3.58
5034 7674 0.459585 AGTGTGTGTGACGGTGTGAC 60.460 55.000 0.00 0.00 0.00 3.67
5035 7675 1.153529 TGTGTGTGACGGTGTGACC 60.154 57.895 0.00 0.00 34.05 4.02
5036 7676 1.143183 GTGTGTGACGGTGTGACCT 59.857 57.895 0.00 0.00 35.66 3.85
5037 7677 0.461339 GTGTGTGACGGTGTGACCTT 60.461 55.000 0.00 0.00 35.66 3.50
5038 7678 1.112950 TGTGTGACGGTGTGACCTTA 58.887 50.000 0.00 0.00 35.66 2.69
5039 7679 1.067974 TGTGTGACGGTGTGACCTTAG 59.932 52.381 0.00 0.00 35.66 2.18
5040 7680 0.677288 TGTGACGGTGTGACCTTAGG 59.323 55.000 0.00 0.00 35.66 2.69
5041 7681 0.037605 GTGACGGTGTGACCTTAGGG 60.038 60.000 2.32 0.00 35.66 3.53
5042 7682 1.079336 GACGGTGTGACCTTAGGGC 60.079 63.158 2.32 0.00 35.66 5.19
5043 7683 1.535687 ACGGTGTGACCTTAGGGCT 60.536 57.895 5.41 0.00 35.66 5.19
5044 7684 0.251922 ACGGTGTGACCTTAGGGCTA 60.252 55.000 5.41 0.00 35.66 3.93
5045 7685 0.460311 CGGTGTGACCTTAGGGCTAG 59.540 60.000 5.41 0.00 35.66 3.42
5046 7686 1.569653 GGTGTGACCTTAGGGCTAGT 58.430 55.000 5.41 0.00 34.73 2.57
5047 7687 1.207329 GGTGTGACCTTAGGGCTAGTG 59.793 57.143 5.41 0.00 34.73 2.74
5048 7688 1.900486 GTGTGACCTTAGGGCTAGTGT 59.100 52.381 5.41 0.00 35.63 3.55
5049 7689 2.302157 GTGTGACCTTAGGGCTAGTGTT 59.698 50.000 5.41 0.00 35.63 3.32
5050 7690 2.301870 TGTGACCTTAGGGCTAGTGTTG 59.698 50.000 5.41 0.00 35.63 3.33
5051 7691 1.906574 TGACCTTAGGGCTAGTGTTGG 59.093 52.381 5.41 0.00 35.63 3.77
5052 7692 1.209747 GACCTTAGGGCTAGTGTTGGG 59.790 57.143 2.32 0.00 35.63 4.12
5053 7693 1.286248 CCTTAGGGCTAGTGTTGGGT 58.714 55.000 0.00 0.00 0.00 4.51
5054 7694 1.209747 CCTTAGGGCTAGTGTTGGGTC 59.790 57.143 0.00 0.00 0.00 4.46
5055 7695 0.899720 TTAGGGCTAGTGTTGGGTCG 59.100 55.000 0.00 0.00 0.00 4.79
5056 7696 0.040058 TAGGGCTAGTGTTGGGTCGA 59.960 55.000 0.00 0.00 0.00 4.20
5057 7697 1.218316 GGGCTAGTGTTGGGTCGAG 59.782 63.158 0.00 0.00 0.00 4.04
5058 7698 1.542187 GGGCTAGTGTTGGGTCGAGT 61.542 60.000 0.00 0.00 0.00 4.18
5059 7699 0.389948 GGCTAGTGTTGGGTCGAGTG 60.390 60.000 0.00 0.00 0.00 3.51
5060 7700 0.389948 GCTAGTGTTGGGTCGAGTGG 60.390 60.000 0.00 0.00 0.00 4.00
5061 7701 0.966920 CTAGTGTTGGGTCGAGTGGT 59.033 55.000 0.00 0.00 0.00 4.16
5062 7702 0.963962 TAGTGTTGGGTCGAGTGGTC 59.036 55.000 0.00 0.00 0.00 4.02
5063 7703 1.046472 AGTGTTGGGTCGAGTGGTCA 61.046 55.000 0.00 0.00 0.00 4.02
5064 7704 0.179067 GTGTTGGGTCGAGTGGTCAA 60.179 55.000 0.00 0.00 0.00 3.18
5065 7705 0.179067 TGTTGGGTCGAGTGGTCAAC 60.179 55.000 0.00 0.00 38.41 3.18
5066 7706 0.179067 GTTGGGTCGAGTGGTCAACA 60.179 55.000 0.00 0.00 38.00 3.33
5067 7707 0.105964 TTGGGTCGAGTGGTCAACAG 59.894 55.000 0.00 0.00 0.00 3.16
5068 7708 1.004918 GGGTCGAGTGGTCAACAGG 60.005 63.158 0.00 0.00 0.00 4.00
5069 7709 1.668151 GGTCGAGTGGTCAACAGGC 60.668 63.158 0.00 0.00 0.00 4.85
5070 7710 1.668151 GTCGAGTGGTCAACAGGCC 60.668 63.158 0.00 0.00 0.00 5.19
5071 7711 2.137528 TCGAGTGGTCAACAGGCCA 61.138 57.895 5.01 0.00 0.00 5.36
5072 7712 1.003355 CGAGTGGTCAACAGGCCAT 60.003 57.895 5.01 0.00 37.09 4.40
5073 7713 1.021390 CGAGTGGTCAACAGGCCATC 61.021 60.000 5.01 0.00 37.09 3.51
5074 7714 1.003355 AGTGGTCAACAGGCCATCG 60.003 57.895 5.01 0.00 37.09 3.84
5075 7715 2.359850 TGGTCAACAGGCCATCGC 60.360 61.111 5.01 0.00 0.00 4.58
5076 7716 2.359850 GGTCAACAGGCCATCGCA 60.360 61.111 5.01 0.00 36.38 5.10
5077 7717 1.750399 GGTCAACAGGCCATCGCAT 60.750 57.895 5.01 0.00 36.38 4.73
5081 7721 1.750399 AACAGGCCATCGCATGGTC 60.750 57.895 5.01 10.66 45.32 4.02
5093 7733 3.339042 ATGGTCCCATGGGCTGAG 58.661 61.111 27.41 1.65 35.03 3.35
5094 7734 3.065787 ATGGTCCCATGGGCTGAGC 62.066 63.158 27.41 18.88 35.03 4.26
5095 7735 4.864334 GGTCCCATGGGCTGAGCG 62.864 72.222 27.41 0.00 34.68 5.03
5096 7736 3.785859 GTCCCATGGGCTGAGCGA 61.786 66.667 27.41 3.53 34.68 4.93
5105 7745 1.339920 TGGGCTGAGCGATTTCAATCA 60.340 47.619 0.00 0.00 35.11 2.57
5106 7746 1.952296 GGGCTGAGCGATTTCAATCAT 59.048 47.619 0.00 0.00 35.11 2.45
5107 7747 2.287427 GGGCTGAGCGATTTCAATCATG 60.287 50.000 0.00 0.00 35.11 3.07
5108 7748 2.287427 GGCTGAGCGATTTCAATCATGG 60.287 50.000 0.00 0.00 35.11 3.66
5110 7750 1.331447 TGAGCGATTTCAATCATGGCG 59.669 47.619 0.00 0.00 35.11 5.69
5111 7751 1.599071 GAGCGATTTCAATCATGGCGA 59.401 47.619 0.00 0.00 35.11 5.54
5112 7752 2.224606 AGCGATTTCAATCATGGCGAT 58.775 42.857 0.00 0.00 35.11 4.58
5116 7756 4.600032 CGATTTCAATCATGGCGATTTCA 58.400 39.130 0.00 0.00 41.83 2.69
5129 7769 3.254166 GGCGATTTCAATCATGGCAGTAT 59.746 43.478 0.00 0.00 35.11 2.12
5132 7772 6.349611 GGCGATTTCAATCATGGCAGTATAAT 60.350 38.462 0.00 0.00 35.11 1.28
5139 7779 6.262944 TCAATCATGGCAGTATAATGAACACC 59.737 38.462 3.96 0.00 34.21 4.16
5146 7786 6.095300 TGGCAGTATAATGAACACCAGAAATG 59.905 38.462 3.96 0.00 0.00 2.32
5194 7834 3.003585 TGTCAACTAGCGACGACTACAAA 59.996 43.478 0.00 0.00 36.11 2.83
5207 7847 3.795101 CGACTACAAACACTGAAACGAGT 59.205 43.478 0.00 0.00 0.00 4.18
5208 7848 4.266976 CGACTACAAACACTGAAACGAGTT 59.733 41.667 0.00 0.00 0.00 3.01
5209 7849 5.456497 CGACTACAAACACTGAAACGAGTTA 59.544 40.000 0.00 0.00 0.00 2.24
5216 7856 2.542595 CACTGAAACGAGTTAAAGGCGT 59.457 45.455 0.00 0.00 40.35 5.68
5233 7873 3.469970 TGCCGCCGTCATCATCCT 61.470 61.111 0.00 0.00 0.00 3.24
5270 7913 4.647853 TCGGGCATAACTTGTAGTAGACAT 59.352 41.667 0.00 0.00 38.07 3.06
5271 7914 4.982916 CGGGCATAACTTGTAGTAGACATC 59.017 45.833 0.00 0.00 38.07 3.06
5292 7935 1.134367 CGGGAAGTCGTCATGCTAAGA 59.866 52.381 0.00 0.00 0.00 2.10
5294 7937 2.166664 GGGAAGTCGTCATGCTAAGACT 59.833 50.000 6.44 6.44 44.81 3.24
5312 7955 0.108186 CTTCATAGGACCAGCGCACA 60.108 55.000 11.47 0.00 0.00 4.57
5328 7971 1.131504 GCACAAGAACAACAACCGTCA 59.868 47.619 0.00 0.00 0.00 4.35
5330 7973 3.617669 CACAAGAACAACAACCGTCATC 58.382 45.455 0.00 0.00 0.00 2.92
5337 7980 2.029380 ACAACAACCGTCATCGATGAGA 60.029 45.455 27.95 5.44 37.51 3.27
5385 8028 6.305272 ACCTGAAGACACATGAACATAGAT 57.695 37.500 0.00 0.00 0.00 1.98
5455 8098 4.033776 CACCTCCACACGCCCCAT 62.034 66.667 0.00 0.00 0.00 4.00
5456 8099 4.033776 ACCTCCACACGCCCCATG 62.034 66.667 0.00 0.00 0.00 3.66
5463 8108 2.440796 CACGCCCCATGGATGCTT 60.441 61.111 15.22 6.34 0.00 3.91
5464 8109 2.124151 ACGCCCCATGGATGCTTC 60.124 61.111 15.22 0.00 0.00 3.86
5466 8111 1.529948 CGCCCCATGGATGCTTCAT 60.530 57.895 15.22 0.00 0.00 2.57
5499 8144 2.279408 GGACTAGGCGGGGAGACT 59.721 66.667 0.00 0.00 43.68 3.24
5507 8152 2.197465 AGGCGGGGAGACTTTTATTCT 58.803 47.619 0.00 0.00 30.60 2.40
5552 8198 0.954449 CCTTGCTGAGCAGGACACAG 60.954 60.000 18.75 6.35 40.61 3.66
5568 8214 4.262894 GGACACAGACCCTAACAAATCTCA 60.263 45.833 0.00 0.00 0.00 3.27
5618 8265 0.329596 GGACCTTGCCAGAATCCACT 59.670 55.000 3.90 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.229529 ACCACCTGTCCGATCCCTT 60.230 57.895 0.00 0.00 0.00 3.95
17 18 1.538419 GCTAATAGCCGACCACCTGTC 60.538 57.143 0.00 0.00 40.81 3.51
88 89 7.706179 CGAATTCCCATGCTGTTTTATAAATGT 59.294 33.333 0.00 0.00 0.00 2.71
89 90 7.920151 TCGAATTCCCATGCTGTTTTATAAATG 59.080 33.333 0.00 0.00 0.00 2.32
91 92 7.397892 TCGAATTCCCATGCTGTTTTATAAA 57.602 32.000 0.00 0.00 0.00 1.40
94 118 6.469782 AATCGAATTCCCATGCTGTTTTAT 57.530 33.333 0.00 0.00 0.00 1.40
100 124 4.374843 TCAAAATCGAATTCCCATGCTG 57.625 40.909 0.00 0.00 0.00 4.41
188 212 4.688413 CCTCTCTCTTCCTTTGAAAACTCG 59.312 45.833 0.00 0.00 0.00 4.18
200 227 1.685355 GCAGGCCTCCTCTCTCTTCC 61.685 65.000 0.00 0.00 0.00 3.46
201 228 1.822615 GCAGGCCTCCTCTCTCTTC 59.177 63.158 0.00 0.00 0.00 2.87
202 229 2.057408 CGCAGGCCTCCTCTCTCTT 61.057 63.158 0.00 0.00 0.00 2.85
206 242 1.832167 AGATCGCAGGCCTCCTCTC 60.832 63.158 0.00 0.00 0.00 3.20
328 364 2.371841 TGATTTGGTAGATGGGATCCGG 59.628 50.000 5.45 0.00 0.00 5.14
373 427 2.554032 CTGGTGTCTTCGCCTGATTTTT 59.446 45.455 0.00 0.00 42.98 1.94
374 428 2.154462 CTGGTGTCTTCGCCTGATTTT 58.846 47.619 0.00 0.00 42.98 1.82
375 429 1.072331 ACTGGTGTCTTCGCCTGATTT 59.928 47.619 10.65 0.00 42.98 2.17
376 430 0.687354 ACTGGTGTCTTCGCCTGATT 59.313 50.000 10.65 0.00 42.98 2.57
377 431 1.557099 TACTGGTGTCTTCGCCTGAT 58.443 50.000 10.65 0.63 42.98 2.90
378 432 1.000506 GTTACTGGTGTCTTCGCCTGA 59.999 52.381 10.65 0.00 42.98 3.86
379 433 1.429463 GTTACTGGTGTCTTCGCCTG 58.571 55.000 0.00 0.00 43.94 4.85
380 434 0.038526 CGTTACTGGTGTCTTCGCCT 60.039 55.000 0.00 0.00 43.94 5.52
381 435 0.319297 ACGTTACTGGTGTCTTCGCC 60.319 55.000 0.00 0.00 43.87 5.54
382 436 1.058404 GACGTTACTGGTGTCTTCGC 58.942 55.000 0.00 0.00 0.00 4.70
383 437 1.668047 GGGACGTTACTGGTGTCTTCG 60.668 57.143 0.00 0.00 33.21 3.79
384 438 1.617357 AGGGACGTTACTGGTGTCTTC 59.383 52.381 0.00 0.00 33.21 2.87
385 439 1.713297 AGGGACGTTACTGGTGTCTT 58.287 50.000 0.00 0.00 33.21 3.01
386 440 1.617357 GAAGGGACGTTACTGGTGTCT 59.383 52.381 0.00 0.00 33.21 3.41
387 441 1.342174 TGAAGGGACGTTACTGGTGTC 59.658 52.381 0.00 0.00 0.00 3.67
388 442 1.343465 CTGAAGGGACGTTACTGGTGT 59.657 52.381 0.00 0.00 0.00 4.16
393 447 1.590147 CGGCTGAAGGGACGTTACT 59.410 57.895 0.00 0.00 32.39 2.24
399 453 2.722201 ATCGGACGGCTGAAGGGAC 61.722 63.158 2.50 0.00 32.06 4.46
431 485 2.992114 CCGATCGGCTCTAGGGGG 60.992 72.222 23.37 0.00 0.00 5.40
512 566 4.109320 CGGTATTAATAAGGGGGAGGGAT 58.891 47.826 0.00 0.00 0.00 3.85
550 606 2.034221 GGCGGAGGATAATGGGCC 59.966 66.667 0.00 0.00 0.00 5.80
554 610 0.319900 CGGAGTGGCGGAGGATAATG 60.320 60.000 0.00 0.00 0.00 1.90
580 636 4.287238 TGCGGAACAAGAAGAACTTTTC 57.713 40.909 0.00 0.00 36.61 2.29
673 730 6.294176 CCAGACAAGAAATTTGGACGAGATTT 60.294 38.462 0.00 0.00 0.00 2.17
676 733 4.065088 CCAGACAAGAAATTTGGACGAGA 58.935 43.478 0.00 0.00 0.00 4.04
681 738 5.208121 AGGAAACCAGACAAGAAATTTGGA 58.792 37.500 0.00 0.00 33.19 3.53
683 740 5.532557 GGAGGAAACCAGACAAGAAATTTG 58.467 41.667 0.00 0.00 0.00 2.32
690 747 2.028112 TGATCGGAGGAAACCAGACAAG 60.028 50.000 0.00 0.00 0.00 3.16
692 749 1.639722 TGATCGGAGGAAACCAGACA 58.360 50.000 0.00 0.00 0.00 3.41
729 786 0.534203 TTCGGTGAACAAGGCCTGAC 60.534 55.000 5.69 0.00 0.00 3.51
730 787 0.400213 ATTCGGTGAACAAGGCCTGA 59.600 50.000 5.69 0.00 0.00 3.86
735 792 5.376854 AAATTCAGATTCGGTGAACAAGG 57.623 39.130 0.00 0.00 36.76 3.61
739 796 8.029642 TCTTCTAAAATTCAGATTCGGTGAAC 57.970 34.615 0.00 0.00 36.76 3.18
762 819 5.295045 ACGACAAACACCGTATTTTTCTTCT 59.705 36.000 0.00 0.00 37.23 2.85
775 832 8.173130 CCTATAACTAATCAAACGACAAACACC 58.827 37.037 0.00 0.00 0.00 4.16
778 835 7.201670 CCCCCTATAACTAATCAAACGACAAAC 60.202 40.741 0.00 0.00 0.00 2.93
880 937 0.233332 GCGCTAAATCACCAGATCGC 59.767 55.000 0.00 0.00 36.86 4.58
918 976 1.936547 GCTACAGAGTGGCAAGCATAC 59.063 52.381 1.88 0.00 39.80 2.39
919 977 1.471501 CGCTACAGAGTGGCAAGCATA 60.472 52.381 7.31 0.00 40.02 3.14
920 978 0.742281 CGCTACAGAGTGGCAAGCAT 60.742 55.000 7.31 0.00 40.02 3.79
921 979 1.374631 CGCTACAGAGTGGCAAGCA 60.375 57.895 7.31 0.00 40.02 3.91
922 980 2.744768 GCGCTACAGAGTGGCAAGC 61.745 63.158 0.00 0.00 40.02 4.01
923 981 1.374631 TGCGCTACAGAGTGGCAAG 60.375 57.895 9.73 0.00 40.02 4.01
924 982 2.740438 TGCGCTACAGAGTGGCAA 59.260 55.556 9.73 0.00 40.02 4.52
996 1066 0.537188 AATTCGTGGTCGCCATCTCT 59.463 50.000 1.90 0.00 35.28 3.10
1116 1186 4.760047 GGCGTCTGGGCGACATGT 62.760 66.667 0.00 0.00 42.98 3.21
1139 1209 2.797156 CCTACATTCTTGAGCGAATCCG 59.203 50.000 0.00 0.00 31.52 4.18
1200 1291 6.895756 AGGATGCAGGCAATCATAATAATCAT 59.104 34.615 0.00 0.00 0.00 2.45
1208 1299 4.025360 ACAAAAGGATGCAGGCAATCATA 58.975 39.130 0.00 0.00 0.00 2.15
1209 1300 2.835764 ACAAAAGGATGCAGGCAATCAT 59.164 40.909 0.00 0.00 0.00 2.45
1210 1301 2.231964 GACAAAAGGATGCAGGCAATCA 59.768 45.455 0.00 0.00 0.00 2.57
1211 1302 2.733227 CGACAAAAGGATGCAGGCAATC 60.733 50.000 0.00 0.00 0.00 2.67
1212 1303 1.203052 CGACAAAAGGATGCAGGCAAT 59.797 47.619 0.00 0.00 0.00 3.56
1247 1338 5.316327 TCTACAGCAGAAGTATGTGACTG 57.684 43.478 0.00 0.00 38.87 3.51
1271 1366 2.490903 ACAACTGCAATCAGGATGCTTC 59.509 45.455 0.00 0.00 44.54 3.86
1297 1392 5.655090 AGATTCATCATCATGCTCAAACCAA 59.345 36.000 0.00 0.00 33.75 3.67
1326 1421 7.852971 TTTATAGTAAAGGGTCCAACATTCG 57.147 36.000 0.00 0.00 0.00 3.34
1354 1449 6.371548 AGTTACGATTGCACAATATTGACTGT 59.628 34.615 22.16 11.48 0.00 3.55
1355 1450 6.775088 AGTTACGATTGCACAATATTGACTG 58.225 36.000 22.16 11.57 0.00 3.51
1390 1499 6.358558 ACAAACATTGTAGCGAAAATTACACG 59.641 34.615 0.00 0.00 43.27 4.49
1391 1500 7.617533 ACAAACATTGTAGCGAAAATTACAC 57.382 32.000 0.00 0.00 43.27 2.90
1392 1501 8.635877 AAACAAACATTGTAGCGAAAATTACA 57.364 26.923 0.00 0.00 44.59 2.41
1393 1502 9.983431 GTAAACAAACATTGTAGCGAAAATTAC 57.017 29.630 0.00 0.00 44.59 1.89
1395 1504 8.635877 TGTAAACAAACATTGTAGCGAAAATT 57.364 26.923 0.00 0.00 44.59 1.82
1396 1505 8.810652 ATGTAAACAAACATTGTAGCGAAAAT 57.189 26.923 0.00 0.00 44.59 1.82
1398 1507 9.171701 GTAATGTAAACAAACATTGTAGCGAAA 57.828 29.630 11.45 0.00 46.77 3.46
1399 1508 8.561212 AGTAATGTAAACAAACATTGTAGCGAA 58.439 29.630 11.45 0.00 46.77 4.70
1400 1509 8.090250 AGTAATGTAAACAAACATTGTAGCGA 57.910 30.769 11.45 0.00 46.77 4.93
1401 1510 9.257865 GTAGTAATGTAAACAAACATTGTAGCG 57.742 33.333 11.45 0.00 46.77 4.26
1428 1541 6.606796 AGGTTGGATGCAACATATGAATTACA 59.393 34.615 28.21 0.00 36.83 2.41
1527 1640 7.444487 CACCCTAAAACAGAGTTAAGCTTAGTT 59.556 37.037 6.24 4.38 0.00 2.24
1570 1683 2.093235 AGTTCCATGAGCCTTCACTAGC 60.093 50.000 0.00 0.00 35.83 3.42
1713 1826 3.845178 CACTGATCGGTACTAACAGCAA 58.155 45.455 6.92 0.00 32.67 3.91
1714 1827 2.416836 GCACTGATCGGTACTAACAGCA 60.417 50.000 6.92 0.00 32.67 4.41
1764 1877 3.323691 TCAAGAATCCCGTTGAAGTCAGA 59.676 43.478 0.00 0.00 29.66 3.27
1883 2012 7.611213 AGACAGCAAAGTATGTAACATAACC 57.389 36.000 0.00 0.00 0.00 2.85
1897 2027 5.557136 CGACTCAAACAGTTAGACAGCAAAG 60.557 44.000 0.00 0.00 34.41 2.77
1966 2096 9.443283 GCAGCATACAAGTGAAAAAGAATATAG 57.557 33.333 0.00 0.00 0.00 1.31
1975 2105 5.163571 TGTGAAAGCAGCATACAAGTGAAAA 60.164 36.000 0.00 0.00 0.00 2.29
1991 2121 7.042523 AGCATACAAAAGTGAAAATGTGAAAGC 60.043 33.333 0.00 0.00 0.00 3.51
2004 2134 9.450807 GGCTAATTGTTATAGCATACAAAAGTG 57.549 33.333 7.73 0.00 46.01 3.16
2005 2135 9.184523 TGGCTAATTGTTATAGCATACAAAAGT 57.815 29.630 7.73 0.00 46.01 2.66
2010 2140 9.348476 TGAAATGGCTAATTGTTATAGCATACA 57.652 29.630 7.73 0.00 46.01 2.29
2011 2141 9.831737 CTGAAATGGCTAATTGTTATAGCATAC 57.168 33.333 7.73 0.00 46.01 2.39
2012 2142 9.791801 TCTGAAATGGCTAATTGTTATAGCATA 57.208 29.630 7.73 0.00 46.01 3.14
2013 2143 8.696043 TCTGAAATGGCTAATTGTTATAGCAT 57.304 30.769 7.73 0.00 46.01 3.79
2014 2144 8.696043 ATCTGAAATGGCTAATTGTTATAGCA 57.304 30.769 7.73 0.00 46.01 3.49
2015 2145 9.403110 CAATCTGAAATGGCTAATTGTTATAGC 57.597 33.333 0.00 0.00 43.99 2.97
2019 2149 9.995003 AAAACAATCTGAAATGGCTAATTGTTA 57.005 25.926 10.59 0.00 43.02 2.41
2020 2150 8.907222 AAAACAATCTGAAATGGCTAATTGTT 57.093 26.923 5.66 5.66 44.68 2.83
2021 2151 8.149647 TGAAAACAATCTGAAATGGCTAATTGT 58.850 29.630 0.00 0.00 38.57 2.71
2022 2152 8.537049 TGAAAACAATCTGAAATGGCTAATTG 57.463 30.769 0.00 0.00 0.00 2.32
2089 2219 0.791983 CAGCATCAACAAGCTTCGCG 60.792 55.000 0.00 0.00 39.50 5.87
2264 2394 0.249911 AGACAACAAGGTCTGGCGTC 60.250 55.000 0.00 0.00 46.02 5.19
2274 2404 6.497437 TGACAAATCATCACAAGACAACAAG 58.503 36.000 0.00 0.00 0.00 3.16
2308 2438 8.947055 AATAAAGTGAAACAAAACAGAGCAAT 57.053 26.923 0.00 0.00 41.43 3.56
2562 2692 8.660373 CAAAATTGCACCTTACAAAACTAAACA 58.340 29.630 0.00 0.00 0.00 2.83
2569 2699 8.723942 ATAACACAAAATTGCACCTTACAAAA 57.276 26.923 0.00 0.00 0.00 2.44
2727 2857 3.358707 TCACAGCTTCAAGTGCATTTG 57.641 42.857 15.31 15.31 35.76 2.32
2920 3050 4.079028 CACGAACACGGTCAAATTTATCG 58.921 43.478 0.00 0.00 0.00 2.92
2974 3104 4.333926 GGAAGCTTCAACTCACCATCATAC 59.666 45.833 27.02 0.85 0.00 2.39
3126 5514 2.980568 TGAACGTGAAGAACCAAGTGT 58.019 42.857 0.00 0.00 0.00 3.55
3185 5573 1.434555 CACGTAATCAAGCACCCGAA 58.565 50.000 0.00 0.00 0.00 4.30
3202 5590 7.448748 AACCTGACATAAAGTAATGTTCCAC 57.551 36.000 0.00 0.00 40.17 4.02
3214 5602 5.427157 TGGGAGTATGCTAACCTGACATAAA 59.573 40.000 5.77 0.00 0.00 1.40
3282 5670 7.253883 GCAAAATACAATAAGCATCTGACTTGC 60.254 37.037 0.00 0.00 40.45 4.01
3369 5758 6.406512 GGTTCCAGAAAGTACAACAAACCAAT 60.407 38.462 0.00 0.00 35.00 3.16
3536 5926 9.527566 CTGAAATAACGGTTTGCAAAAATAATG 57.472 29.630 14.67 3.00 0.00 1.90
3861 6251 2.140717 GTCACCTGTTACACCTTTCCG 58.859 52.381 0.00 0.00 0.00 4.30
4047 6437 5.051106 ACAAAACATTGACAGCATAAAACGC 60.051 36.000 0.00 0.00 0.00 4.84
4179 6571 1.812571 ACCATCATTCGGTGAAACTGC 59.187 47.619 0.00 0.00 44.90 4.40
4239 6631 5.076873 CCAAGACCATCTGTTTTAAAGGGA 58.923 41.667 0.00 0.00 0.00 4.20
4245 6637 4.701651 CAGCATCCAAGACCATCTGTTTTA 59.298 41.667 0.00 0.00 0.00 1.52
4354 6746 3.260632 TGCTACCACTCTTGTCAAGCATA 59.739 43.478 7.78 0.00 33.84 3.14
4360 6752 2.234661 CTGGATGCTACCACTCTTGTCA 59.765 50.000 0.00 0.00 35.91 3.58
4369 6761 4.298626 AGGTAAGAATCTGGATGCTACCA 58.701 43.478 8.70 2.82 38.33 3.25
4440 6832 5.574082 TGTTGTCACGTAAAATTGGTCTTG 58.426 37.500 0.00 0.00 0.00 3.02
4589 6981 1.003839 GAGGTTCATCACGGTGGCA 60.004 57.895 8.50 0.00 0.00 4.92
4622 7014 0.738975 TCGTCTCGTAATCAGCAGGG 59.261 55.000 0.00 0.00 0.00 4.45
4680 7074 2.029649 GCAATTTTGGCTTCAGAGAGCA 60.030 45.455 0.00 0.00 44.49 4.26
4795 7190 7.336679 CCACCTTTCTCAATGTTACACATGATA 59.663 37.037 0.00 0.00 37.97 2.15
4867 7262 0.110373 GTCTGTTAAGCAAACCCGCG 60.110 55.000 0.00 0.00 37.27 6.46
4947 7587 1.439353 AAACGCCACTGCACTGACAG 61.439 55.000 0.00 0.00 43.59 3.51
4972 7612 2.819608 GCCACTGCACCTATCTCAAAAA 59.180 45.455 0.00 0.00 37.47 1.94
4973 7613 2.436417 GCCACTGCACCTATCTCAAAA 58.564 47.619 0.00 0.00 37.47 2.44
4974 7614 1.675714 CGCCACTGCACCTATCTCAAA 60.676 52.381 0.00 0.00 37.32 2.69
4975 7615 0.108186 CGCCACTGCACCTATCTCAA 60.108 55.000 0.00 0.00 37.32 3.02
4976 7616 1.257750 ACGCCACTGCACCTATCTCA 61.258 55.000 0.00 0.00 37.32 3.27
4977 7617 0.528684 GACGCCACTGCACCTATCTC 60.529 60.000 0.00 0.00 37.32 2.75
4978 7618 0.972983 AGACGCCACTGCACCTATCT 60.973 55.000 0.00 0.00 37.32 1.98
4979 7619 0.108138 AAGACGCCACTGCACCTATC 60.108 55.000 0.00 0.00 37.32 2.08
4980 7620 0.324943 AAAGACGCCACTGCACCTAT 59.675 50.000 0.00 0.00 37.32 2.57
4981 7621 0.107831 AAAAGACGCCACTGCACCTA 59.892 50.000 0.00 0.00 37.32 3.08
4982 7622 1.152963 AAAAGACGCCACTGCACCT 60.153 52.632 0.00 0.00 37.32 4.00
4983 7623 1.008538 CAAAAGACGCCACTGCACC 60.009 57.895 0.00 0.00 37.32 5.01
4984 7624 0.317020 GTCAAAAGACGCCACTGCAC 60.317 55.000 0.00 0.00 37.32 4.57
4985 7625 1.771073 CGTCAAAAGACGCCACTGCA 61.771 55.000 5.03 0.00 41.77 4.41
4986 7626 1.082756 CGTCAAAAGACGCCACTGC 60.083 57.895 5.03 0.00 41.77 4.40
4994 7634 3.675467 AACAAGAGCACGTCAAAAGAC 57.325 42.857 0.00 0.00 0.00 3.01
4995 7635 4.270084 CACTAACAAGAGCACGTCAAAAGA 59.730 41.667 0.00 0.00 0.00 2.52
4996 7636 4.034048 ACACTAACAAGAGCACGTCAAAAG 59.966 41.667 0.00 0.00 0.00 2.27
4997 7637 3.936453 ACACTAACAAGAGCACGTCAAAA 59.064 39.130 0.00 0.00 0.00 2.44
4998 7638 3.308595 CACACTAACAAGAGCACGTCAAA 59.691 43.478 0.00 0.00 0.00 2.69
4999 7639 2.863740 CACACTAACAAGAGCACGTCAA 59.136 45.455 0.00 0.00 0.00 3.18
5000 7640 2.159156 ACACACTAACAAGAGCACGTCA 60.159 45.455 0.00 0.00 0.00 4.35
5001 7641 2.218759 CACACACTAACAAGAGCACGTC 59.781 50.000 0.00 0.00 0.00 4.34
5002 7642 2.201732 CACACACTAACAAGAGCACGT 58.798 47.619 0.00 0.00 0.00 4.49
5003 7643 2.033747 CACACACACTAACAAGAGCACG 60.034 50.000 0.00 0.00 0.00 5.34
5004 7644 3.001330 GTCACACACACTAACAAGAGCAC 59.999 47.826 0.00 0.00 0.00 4.40
5005 7645 3.194861 GTCACACACACTAACAAGAGCA 58.805 45.455 0.00 0.00 0.00 4.26
5006 7646 2.218759 CGTCACACACACTAACAAGAGC 59.781 50.000 0.00 0.00 0.00 4.09
5007 7647 2.794910 CCGTCACACACACTAACAAGAG 59.205 50.000 0.00 0.00 0.00 2.85
5008 7648 2.166870 ACCGTCACACACACTAACAAGA 59.833 45.455 0.00 0.00 0.00 3.02
5009 7649 2.284150 CACCGTCACACACACTAACAAG 59.716 50.000 0.00 0.00 0.00 3.16
5010 7650 2.272678 CACCGTCACACACACTAACAA 58.727 47.619 0.00 0.00 0.00 2.83
5011 7651 1.205179 ACACCGTCACACACACTAACA 59.795 47.619 0.00 0.00 0.00 2.41
5012 7652 1.591158 CACACCGTCACACACACTAAC 59.409 52.381 0.00 0.00 0.00 2.34
5013 7653 1.477295 TCACACCGTCACACACACTAA 59.523 47.619 0.00 0.00 0.00 2.24
5014 7654 1.104630 TCACACCGTCACACACACTA 58.895 50.000 0.00 0.00 0.00 2.74
5015 7655 0.459585 GTCACACCGTCACACACACT 60.460 55.000 0.00 0.00 0.00 3.55
5016 7656 1.426041 GGTCACACCGTCACACACAC 61.426 60.000 0.00 0.00 0.00 3.82
5017 7657 1.153529 GGTCACACCGTCACACACA 60.154 57.895 0.00 0.00 0.00 3.72
5018 7658 0.461339 AAGGTCACACCGTCACACAC 60.461 55.000 0.00 0.00 44.90 3.82
5019 7659 1.067974 CTAAGGTCACACCGTCACACA 59.932 52.381 0.00 0.00 44.90 3.72
5020 7660 1.604693 CCTAAGGTCACACCGTCACAC 60.605 57.143 0.00 0.00 44.90 3.82
5021 7661 0.677288 CCTAAGGTCACACCGTCACA 59.323 55.000 0.00 0.00 44.90 3.58
5022 7662 0.037605 CCCTAAGGTCACACCGTCAC 60.038 60.000 0.00 0.00 44.90 3.67
5023 7663 1.823169 GCCCTAAGGTCACACCGTCA 61.823 60.000 0.00 0.00 44.90 4.35
5024 7664 1.079336 GCCCTAAGGTCACACCGTC 60.079 63.158 0.00 0.00 44.90 4.79
5025 7665 0.251922 TAGCCCTAAGGTCACACCGT 60.252 55.000 0.00 0.00 44.90 4.83
5026 7666 0.460311 CTAGCCCTAAGGTCACACCG 59.540 60.000 0.00 0.00 44.90 4.94
5027 7667 1.207329 CACTAGCCCTAAGGTCACACC 59.793 57.143 0.00 0.00 38.99 4.16
5028 7668 1.900486 ACACTAGCCCTAAGGTCACAC 59.100 52.381 0.00 0.00 34.57 3.82
5029 7669 2.301870 CAACACTAGCCCTAAGGTCACA 59.698 50.000 0.00 0.00 34.57 3.58
5030 7670 2.354805 CCAACACTAGCCCTAAGGTCAC 60.355 54.545 0.00 0.00 34.57 3.67
5031 7671 1.906574 CCAACACTAGCCCTAAGGTCA 59.093 52.381 0.00 0.00 34.57 4.02
5032 7672 1.209747 CCCAACACTAGCCCTAAGGTC 59.790 57.143 0.00 0.00 34.57 3.85
5033 7673 1.286248 CCCAACACTAGCCCTAAGGT 58.714 55.000 0.00 0.00 34.57 3.50
5034 7674 1.209747 GACCCAACACTAGCCCTAAGG 59.790 57.143 0.00 0.00 0.00 2.69
5035 7675 1.134788 CGACCCAACACTAGCCCTAAG 60.135 57.143 0.00 0.00 0.00 2.18
5036 7676 0.899720 CGACCCAACACTAGCCCTAA 59.100 55.000 0.00 0.00 0.00 2.69
5037 7677 0.040058 TCGACCCAACACTAGCCCTA 59.960 55.000 0.00 0.00 0.00 3.53
5038 7678 1.229082 TCGACCCAACACTAGCCCT 60.229 57.895 0.00 0.00 0.00 5.19
5039 7679 1.218316 CTCGACCCAACACTAGCCC 59.782 63.158 0.00 0.00 0.00 5.19
5040 7680 0.389948 CACTCGACCCAACACTAGCC 60.390 60.000 0.00 0.00 0.00 3.93
5041 7681 0.389948 CCACTCGACCCAACACTAGC 60.390 60.000 0.00 0.00 0.00 3.42
5042 7682 0.966920 ACCACTCGACCCAACACTAG 59.033 55.000 0.00 0.00 0.00 2.57
5043 7683 0.963962 GACCACTCGACCCAACACTA 59.036 55.000 0.00 0.00 0.00 2.74
5044 7684 1.046472 TGACCACTCGACCCAACACT 61.046 55.000 0.00 0.00 0.00 3.55
5045 7685 0.179067 TTGACCACTCGACCCAACAC 60.179 55.000 0.00 0.00 0.00 3.32
5046 7686 0.179067 GTTGACCACTCGACCCAACA 60.179 55.000 0.00 0.00 37.59 3.33
5047 7687 0.179067 TGTTGACCACTCGACCCAAC 60.179 55.000 0.00 0.00 38.00 3.77
5048 7688 0.105964 CTGTTGACCACTCGACCCAA 59.894 55.000 0.00 0.00 30.29 4.12
5049 7689 1.745890 CTGTTGACCACTCGACCCA 59.254 57.895 0.00 0.00 30.29 4.51
5050 7690 1.004918 CCTGTTGACCACTCGACCC 60.005 63.158 0.00 0.00 30.29 4.46
5051 7691 1.668151 GCCTGTTGACCACTCGACC 60.668 63.158 0.00 0.00 30.29 4.79
5052 7692 1.668151 GGCCTGTTGACCACTCGAC 60.668 63.158 0.00 0.00 0.00 4.20
5053 7693 1.480212 ATGGCCTGTTGACCACTCGA 61.480 55.000 3.32 0.00 39.19 4.04
5054 7694 1.003355 ATGGCCTGTTGACCACTCG 60.003 57.895 3.32 0.00 39.19 4.18
5055 7695 1.021390 CGATGGCCTGTTGACCACTC 61.021 60.000 3.32 0.00 39.19 3.51
5056 7696 1.003355 CGATGGCCTGTTGACCACT 60.003 57.895 3.32 0.00 39.19 4.00
5057 7697 2.690778 GCGATGGCCTGTTGACCAC 61.691 63.158 3.32 0.00 39.19 4.16
5058 7698 2.359850 GCGATGGCCTGTTGACCA 60.360 61.111 3.32 0.00 41.06 4.02
5059 7699 1.750399 ATGCGATGGCCTGTTGACC 60.750 57.895 3.32 0.00 38.85 4.02
5060 7700 1.430632 CATGCGATGGCCTGTTGAC 59.569 57.895 3.32 0.00 38.85 3.18
5061 7701 1.750018 CCATGCGATGGCCTGTTGA 60.750 57.895 3.32 0.00 44.70 3.18
5062 7702 2.802792 CCATGCGATGGCCTGTTG 59.197 61.111 3.32 0.00 44.70 3.33
5076 7716 3.065787 GCTCAGCCCATGGGACCAT 62.066 63.158 36.00 13.68 37.50 3.55
5077 7717 3.731728 GCTCAGCCCATGGGACCA 61.732 66.667 36.00 15.13 37.50 4.02
5078 7718 4.864334 CGCTCAGCCCATGGGACC 62.864 72.222 36.00 17.93 37.50 4.46
5079 7719 2.615227 AATCGCTCAGCCCATGGGAC 62.615 60.000 36.00 24.39 37.50 4.46
5080 7720 1.925285 AAATCGCTCAGCCCATGGGA 61.925 55.000 36.00 13.18 37.50 4.37
5081 7721 1.450531 GAAATCGCTCAGCCCATGGG 61.451 60.000 27.87 27.87 38.57 4.00
5082 7722 0.749091 TGAAATCGCTCAGCCCATGG 60.749 55.000 4.14 4.14 0.00 3.66
5083 7723 1.097232 TTGAAATCGCTCAGCCCATG 58.903 50.000 0.00 0.00 0.00 3.66
5084 7724 1.952296 GATTGAAATCGCTCAGCCCAT 59.048 47.619 0.00 0.00 0.00 4.00
5085 7725 1.339920 TGATTGAAATCGCTCAGCCCA 60.340 47.619 0.00 0.00 38.26 5.36
5086 7726 1.382522 TGATTGAAATCGCTCAGCCC 58.617 50.000 0.00 0.00 38.26 5.19
5087 7727 2.287427 CCATGATTGAAATCGCTCAGCC 60.287 50.000 0.00 0.00 38.26 4.85
5088 7728 2.857489 GCCATGATTGAAATCGCTCAGC 60.857 50.000 0.00 0.00 38.26 4.26
5089 7729 2.601504 CGCCATGATTGAAATCGCTCAG 60.602 50.000 0.00 0.00 38.26 3.35
5090 7730 1.331447 CGCCATGATTGAAATCGCTCA 59.669 47.619 0.00 0.00 38.26 4.26
5091 7731 1.599071 TCGCCATGATTGAAATCGCTC 59.401 47.619 0.00 0.00 38.26 5.03
5092 7732 1.667236 TCGCCATGATTGAAATCGCT 58.333 45.000 0.00 0.00 38.26 4.93
5093 7733 2.693797 ATCGCCATGATTGAAATCGC 57.306 45.000 0.00 0.00 38.26 4.58
5094 7734 4.600032 TGAAATCGCCATGATTGAAATCG 58.400 39.130 0.00 0.00 46.65 3.34
5095 7735 6.698329 TGATTGAAATCGCCATGATTGAAATC 59.302 34.615 0.00 13.36 46.65 2.17
5096 7736 6.575267 TGATTGAAATCGCCATGATTGAAAT 58.425 32.000 0.00 0.00 46.65 2.17
5105 7745 2.033372 TGCCATGATTGAAATCGCCAT 58.967 42.857 0.00 0.00 38.26 4.40
5106 7746 1.406180 CTGCCATGATTGAAATCGCCA 59.594 47.619 0.00 0.00 38.26 5.69
5107 7747 1.406539 ACTGCCATGATTGAAATCGCC 59.593 47.619 0.00 0.00 38.26 5.54
5108 7748 2.857592 ACTGCCATGATTGAAATCGC 57.142 45.000 0.00 0.00 38.26 4.58
5110 7750 9.403110 GTTCATTATACTGCCATGATTGAAATC 57.597 33.333 0.00 0.00 35.97 2.17
5111 7751 8.916062 TGTTCATTATACTGCCATGATTGAAAT 58.084 29.630 0.00 0.00 0.00 2.17
5112 7752 8.190122 GTGTTCATTATACTGCCATGATTGAAA 58.810 33.333 0.00 0.00 0.00 2.69
5116 7756 6.128486 TGGTGTTCATTATACTGCCATGATT 58.872 36.000 0.00 0.00 0.00 2.57
5155 7795 7.565190 AGTTGACATATGGATCTGGATGTAT 57.435 36.000 7.80 0.00 32.75 2.29
5169 7809 4.573607 TGTAGTCGTCGCTAGTTGACATAT 59.426 41.667 14.81 4.94 36.11 1.78
5172 7812 2.145536 TGTAGTCGTCGCTAGTTGACA 58.854 47.619 14.81 3.10 36.11 3.58
5173 7813 2.888513 TGTAGTCGTCGCTAGTTGAC 57.111 50.000 7.07 7.07 0.00 3.18
5174 7814 3.003585 TGTTTGTAGTCGTCGCTAGTTGA 59.996 43.478 0.00 0.00 0.00 3.18
5177 7817 2.551459 AGTGTTTGTAGTCGTCGCTAGT 59.449 45.455 0.00 0.00 0.00 2.57
5194 7834 2.542595 CGCCTTTAACTCGTTTCAGTGT 59.457 45.455 0.00 0.00 0.00 3.55
5216 7856 2.923426 GAAGGATGATGACGGCGGCA 62.923 60.000 21.84 21.84 0.00 5.69
5230 7870 4.377760 ACTCCGGCGAGGGAAGGA 62.378 66.667 9.30 0.00 40.77 3.36
5254 7894 4.858850 TCCCGGATGTCTACTACAAGTTA 58.141 43.478 0.73 0.00 42.70 2.24
5270 7913 0.681887 TAGCATGACGACTTCCCGGA 60.682 55.000 0.73 0.00 0.00 5.14
5271 7914 0.174845 TTAGCATGACGACTTCCCGG 59.825 55.000 0.00 0.00 0.00 5.73
5292 7935 0.108138 GTGCGCTGGTCCTATGAAGT 60.108 55.000 9.73 0.00 0.00 3.01
5294 7937 0.323302 TTGTGCGCTGGTCCTATGAA 59.677 50.000 9.73 0.00 0.00 2.57
5295 7938 0.108186 CTTGTGCGCTGGTCCTATGA 60.108 55.000 9.73 0.00 0.00 2.15
5312 7955 2.828877 TCGATGACGGTTGTTGTTCTT 58.171 42.857 0.00 0.00 40.21 2.52
5328 7971 7.130303 TCGATCTACGTTATTTCTCATCGAT 57.870 36.000 0.00 0.00 43.13 3.59
5330 7973 7.586664 TCTTTCGATCTACGTTATTTCTCATCG 59.413 37.037 0.00 0.00 43.13 3.84
5337 7980 8.601476 GTTGGATTCTTTCGATCTACGTTATTT 58.399 33.333 0.00 0.00 43.13 1.40
5356 7999 4.371624 TCATGTGTCTTCAGGTTGGATT 57.628 40.909 0.00 0.00 0.00 3.01
5385 8028 1.001974 CTCGGATCTGGTTGTGGTTCA 59.998 52.381 0.62 0.00 0.00 3.18
5434 8077 2.203153 GGCGTGTGGAGGTGTGTT 60.203 61.111 0.00 0.00 0.00 3.32
5463 8108 2.358125 CGTTCCGGTGGTGCATGA 60.358 61.111 0.00 0.00 0.00 3.07
5464 8109 3.430862 CCGTTCCGGTGGTGCATG 61.431 66.667 0.00 0.00 42.73 4.06
5499 8144 5.995897 GCGGCTCCCTAAAGATAGAATAAAA 59.004 40.000 0.00 0.00 0.00 1.52
5507 8152 2.046938 CGGCGGCTCCCTAAAGATA 58.953 57.895 7.61 0.00 0.00 1.98
5533 8179 0.954449 CTGTGTCCTGCTCAGCAAGG 60.954 60.000 0.00 4.70 38.41 3.61
5537 8183 1.375268 GGTCTGTGTCCTGCTCAGC 60.375 63.158 0.00 0.00 38.28 4.26
5543 8189 3.485463 TTTGTTAGGGTCTGTGTCCTG 57.515 47.619 0.00 0.00 34.75 3.86
5552 8198 6.204108 TCGTTCTTTTGAGATTTGTTAGGGTC 59.796 38.462 0.00 0.00 0.00 4.46
5568 8214 3.246936 GCTCCGTTGTTAGTCGTTCTTTT 59.753 43.478 0.00 0.00 0.00 2.27
5601 8248 0.610232 GCAGTGGATTCTGGCAAGGT 60.610 55.000 0.00 0.00 36.12 3.50
5611 8258 2.440796 CATGGGGCGCAGTGGATT 60.441 61.111 10.83 0.00 0.00 3.01
5635 8283 3.382832 CCTCGTCTTCGGTGGCCT 61.383 66.667 3.32 0.00 37.69 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.