Multiple sequence alignment - TraesCS3B01G371800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G371800 chr3B 100.000 3868 0 0 1 3868 584578088 584574221 0.000000e+00 7143.0
1 TraesCS3B01G371800 chr3B 85.446 213 8 7 1 211 573411854 573411663 2.360000e-47 200.0
2 TraesCS3B01G371800 chr3A 92.183 3710 158 59 256 3868 587553988 587550314 0.000000e+00 5123.0
3 TraesCS3B01G371800 chr3A 93.365 211 13 1 1 211 650043812 650043603 1.040000e-80 311.0
4 TraesCS3B01G371800 chr3A 97.872 47 1 0 212 258 593034523 593034477 8.910000e-12 82.4
5 TraesCS3B01G371800 chr3D 94.458 3284 83 45 346 3575 445739449 445736211 0.000000e+00 4964.0
6 TraesCS3B01G371800 chr3D 91.518 224 14 4 3649 3868 445643101 445642879 1.750000e-78 303.0
7 TraesCS3B01G371800 chr3D 89.535 86 9 0 3564 3649 445736189 445736104 4.090000e-20 110.0
8 TraesCS3B01G371800 chr1A 79.881 1511 262 36 1369 2856 497498322 497496831 0.000000e+00 1068.0
9 TraesCS3B01G371800 chr1A 84.360 211 12 7 1 211 104827522 104827333 1.830000e-43 187.0
10 TraesCS3B01G371800 chr1D 79.499 1517 269 35 1369 2856 401565547 401564044 0.000000e+00 1040.0
11 TraesCS3B01G371800 chr1B 79.150 1506 274 33 1369 2856 539482147 539480664 0.000000e+00 1005.0
12 TraesCS3B01G371800 chr1B 96.923 130 4 0 1 130 94937595 94937466 6.510000e-53 219.0
13 TraesCS3B01G371800 chr1B 96.124 129 5 0 1 129 114468047 114467919 1.090000e-50 211.0
14 TraesCS3B01G371800 chr1B 85.308 211 10 6 1 211 592409028 592409217 8.480000e-47 198.0
15 TraesCS3B01G371800 chr1B 100.000 45 0 0 212 256 28770618 28770662 2.480000e-12 84.2
16 TraesCS3B01G371800 chr2B 88.780 205 21 2 1 204 40937651 40937448 2.310000e-62 250.0
17 TraesCS3B01G371800 chr2B 96.078 51 2 0 213 263 155886325 155886375 2.480000e-12 84.2
18 TraesCS3B01G371800 chr6B 86.730 211 7 4 1 211 676484387 676484576 8.420000e-52 215.0
19 TraesCS3B01G371800 chr6B 96.124 129 5 0 1 129 713563426 713563298 1.090000e-50 211.0
20 TraesCS3B01G371800 chr6B 97.917 48 1 0 211 258 575936096 575936143 2.480000e-12 84.2
21 TraesCS3B01G371800 chr4A 96.154 130 5 0 1 130 723043501 723043372 3.030000e-51 213.0
22 TraesCS3B01G371800 chr4A 84.834 211 11 6 1 211 743569040 743569229 3.940000e-45 193.0
23 TraesCS3B01G371800 chr4A 96.000 50 2 0 212 261 577200188 577200237 8.910000e-12 82.4
24 TraesCS3B01G371800 chr5D 96.124 129 5 0 1 129 240835474 240835602 1.090000e-50 211.0
25 TraesCS3B01G371800 chr2D 96.124 129 5 0 1 129 91798895 91799023 1.090000e-50 211.0
26 TraesCS3B01G371800 chr2D 96.078 51 2 0 213 263 91799136 91799186 2.480000e-12 84.2
27 TraesCS3B01G371800 chr2D 94.444 54 3 0 213 266 105657710 105657657 2.480000e-12 84.2
28 TraesCS3B01G371800 chr6D 86.058 208 6 6 4 211 444880624 444880440 6.550000e-48 202.0
29 TraesCS3B01G371800 chr6D 89.362 47 2 1 1149 1192 391563091 391563137 5.400000e-04 56.5
30 TraesCS3B01G371800 chr7B 84.360 211 12 6 1 211 640272206 640272395 1.830000e-43 187.0
31 TraesCS3B01G371800 chr5A 83.886 211 13 6 1 211 623556681 623556870 8.540000e-42 182.0
32 TraesCS3B01G371800 chr5B 100.000 46 0 0 212 257 535331498 535331453 6.890000e-13 86.1
33 TraesCS3B01G371800 chr7A 88.710 62 5 2 211 271 39275017 39275077 1.490000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G371800 chr3B 584574221 584578088 3867 True 7143 7143 100.0000 1 3868 1 chr3B.!!$R2 3867
1 TraesCS3B01G371800 chr3A 587550314 587553988 3674 True 5123 5123 92.1830 256 3868 1 chr3A.!!$R1 3612
2 TraesCS3B01G371800 chr3D 445736104 445739449 3345 True 2537 4964 91.9965 346 3649 2 chr3D.!!$R2 3303
3 TraesCS3B01G371800 chr1A 497496831 497498322 1491 True 1068 1068 79.8810 1369 2856 1 chr1A.!!$R2 1487
4 TraesCS3B01G371800 chr1D 401564044 401565547 1503 True 1040 1040 79.4990 1369 2856 1 chr1D.!!$R1 1487
5 TraesCS3B01G371800 chr1B 539480664 539482147 1483 True 1005 1005 79.1500 1369 2856 1 chr1B.!!$R3 1487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.0 0.00 4.00 F
89 90 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.0 0.00 3.51 F
1272 1304 0.320374 TCTTCACCTGGTACGCCTTG 59.680 55.000 0.00 0.0 35.27 3.61 F
1879 1947 1.069432 GTGCAGAACGAGTACGACTCA 60.069 52.381 13.14 0.0 45.30 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 1851 1.077429 GAGGGTGGTCTTGATGCCC 60.077 63.158 0.00 0.0 39.60 5.36 R
1993 2061 2.047750 TTGTAGCGCATCACGGCA 60.048 55.556 11.47 0.0 43.93 5.69 R
2407 2475 0.541998 TGCTCTTCTCGGGGTTCTCA 60.542 55.000 0.00 0.0 0.00 3.27 R
3768 3922 0.106167 TCACTATCCCTCACCTCCCG 60.106 60.000 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.476862 AGACACAAGCGCTCATATATACG 58.523 43.478 12.06 0.00 0.00 3.06
30 31 3.359654 CGCTCATATATACGCGCATACA 58.640 45.455 5.73 0.00 39.11 2.29
31 32 3.177838 CGCTCATATATACGCGCATACAC 59.822 47.826 5.73 0.00 39.11 2.90
32 33 4.352039 GCTCATATATACGCGCATACACT 58.648 43.478 5.73 0.00 0.00 3.55
33 34 4.438145 GCTCATATATACGCGCATACACTC 59.562 45.833 5.73 0.00 0.00 3.51
34 35 5.554822 TCATATATACGCGCATACACTCA 57.445 39.130 5.73 0.00 0.00 3.41
35 36 5.329493 TCATATATACGCGCATACACTCAC 58.671 41.667 5.73 0.00 0.00 3.51
36 37 2.410785 TATACGCGCATACACTCACC 57.589 50.000 5.73 0.00 0.00 4.02
37 38 0.249322 ATACGCGCATACACTCACCC 60.249 55.000 5.73 0.00 0.00 4.61
38 39 2.287457 TACGCGCATACACTCACCCC 62.287 60.000 5.73 0.00 0.00 4.95
39 40 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
40 41 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
41 42 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
42 43 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
43 44 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
44 45 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
45 46 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
46 47 3.118408 GCATACACTCACCCCTATGAACA 60.118 47.826 0.00 0.00 0.00 3.18
47 48 4.442706 CATACACTCACCCCTATGAACAC 58.557 47.826 0.00 0.00 0.00 3.32
48 49 2.334977 ACACTCACCCCTATGAACACA 58.665 47.619 0.00 0.00 0.00 3.72
49 50 2.038557 ACACTCACCCCTATGAACACAC 59.961 50.000 0.00 0.00 0.00 3.82
50 51 2.038426 CACTCACCCCTATGAACACACA 59.962 50.000 0.00 0.00 0.00 3.72
51 52 2.038557 ACTCACCCCTATGAACACACAC 59.961 50.000 0.00 0.00 0.00 3.82
52 53 2.038426 CTCACCCCTATGAACACACACA 59.962 50.000 0.00 0.00 0.00 3.72
53 54 2.151202 CACCCCTATGAACACACACAC 58.849 52.381 0.00 0.00 0.00 3.82
54 55 1.270625 ACCCCTATGAACACACACACG 60.271 52.381 0.00 0.00 0.00 4.49
55 56 0.796312 CCCTATGAACACACACACGC 59.204 55.000 0.00 0.00 0.00 5.34
56 57 1.507562 CCTATGAACACACACACGCA 58.492 50.000 0.00 0.00 0.00 5.24
57 58 1.194547 CCTATGAACACACACACGCAC 59.805 52.381 0.00 0.00 0.00 5.34
58 59 1.864082 CTATGAACACACACACGCACA 59.136 47.619 0.00 0.00 0.00 4.57
59 60 0.376852 ATGAACACACACACGCACAC 59.623 50.000 0.00 0.00 0.00 3.82
60 61 1.061887 GAACACACACACGCACACC 59.938 57.895 0.00 0.00 0.00 4.16
61 62 2.317685 GAACACACACACGCACACCC 62.318 60.000 0.00 0.00 0.00 4.61
62 63 2.513666 CACACACACGCACACCCT 60.514 61.111 0.00 0.00 0.00 4.34
63 64 1.227409 CACACACACGCACACCCTA 60.227 57.895 0.00 0.00 0.00 3.53
64 65 1.227438 ACACACACGCACACCCTAC 60.227 57.895 0.00 0.00 0.00 3.18
65 66 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
66 67 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
67 68 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
68 69 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
69 70 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
70 71 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
71 72 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
72 73 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
73 74 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
74 75 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
75 76 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
76 77 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
77 78 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
78 79 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
79 80 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
80 81 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
81 82 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
82 83 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
83 84 1.048724 CCCCTATGAGCACCTCCGAA 61.049 60.000 0.00 0.00 0.00 4.30
84 85 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
85 86 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
86 87 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
87 88 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
88 89 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
89 90 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
90 91 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
91 92 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
92 93 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
93 94 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
94 95 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
95 96 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
96 97 1.878656 CTCCGAAAGACTGAGCCGGT 61.879 60.000 1.90 0.00 40.87 5.28
97 98 0.609957 TCCGAAAGACTGAGCCGGTA 60.610 55.000 1.90 0.00 40.87 4.02
98 99 0.460311 CCGAAAGACTGAGCCGGTAT 59.540 55.000 1.90 0.00 35.83 2.73
99 100 1.679680 CCGAAAGACTGAGCCGGTATA 59.320 52.381 1.90 0.00 35.83 1.47
100 101 2.296471 CCGAAAGACTGAGCCGGTATAT 59.704 50.000 1.90 0.00 35.83 0.86
101 102 3.243771 CCGAAAGACTGAGCCGGTATATT 60.244 47.826 1.90 0.00 35.83 1.28
102 103 4.022589 CCGAAAGACTGAGCCGGTATATTA 60.023 45.833 1.90 0.00 35.83 0.98
103 104 5.336531 CCGAAAGACTGAGCCGGTATATTAT 60.337 44.000 1.90 0.00 35.83 1.28
104 105 5.800941 CGAAAGACTGAGCCGGTATATTATC 59.199 44.000 1.90 0.00 0.00 1.75
105 106 6.349445 CGAAAGACTGAGCCGGTATATTATCT 60.349 42.308 1.90 0.00 0.00 1.98
106 107 6.919775 AAGACTGAGCCGGTATATTATCTT 57.080 37.500 1.90 1.55 0.00 2.40
107 108 6.274157 AGACTGAGCCGGTATATTATCTTG 57.726 41.667 1.90 0.00 0.00 3.02
108 109 6.010850 AGACTGAGCCGGTATATTATCTTGA 58.989 40.000 1.90 0.00 0.00 3.02
109 110 6.151985 AGACTGAGCCGGTATATTATCTTGAG 59.848 42.308 1.90 0.00 0.00 3.02
110 111 6.010850 ACTGAGCCGGTATATTATCTTGAGA 58.989 40.000 1.90 0.00 0.00 3.27
111 112 6.665680 ACTGAGCCGGTATATTATCTTGAGAT 59.334 38.462 1.90 0.00 38.51 2.75
112 113 7.179338 ACTGAGCCGGTATATTATCTTGAGATT 59.821 37.037 1.90 0.00 36.05 2.40
113 114 7.907389 TGAGCCGGTATATTATCTTGAGATTT 58.093 34.615 1.90 0.00 36.05 2.17
114 115 9.031537 TGAGCCGGTATATTATCTTGAGATTTA 57.968 33.333 1.90 0.00 36.05 1.40
115 116 9.303537 GAGCCGGTATATTATCTTGAGATTTAC 57.696 37.037 1.90 0.00 36.05 2.01
116 117 7.974501 AGCCGGTATATTATCTTGAGATTTACG 59.025 37.037 1.90 0.00 36.05 3.18
117 118 7.972277 GCCGGTATATTATCTTGAGATTTACGA 59.028 37.037 1.90 0.00 36.05 3.43
118 119 9.850628 CCGGTATATTATCTTGAGATTTACGAA 57.149 33.333 0.00 0.00 36.05 3.85
123 124 6.903883 TTATCTTGAGATTTACGAAGCCAC 57.096 37.500 0.00 0.00 36.05 5.01
124 125 3.596214 TCTTGAGATTTACGAAGCCACC 58.404 45.455 0.00 0.00 0.00 4.61
125 126 2.004583 TGAGATTTACGAAGCCACCG 57.995 50.000 0.00 0.00 0.00 4.94
126 127 1.274167 TGAGATTTACGAAGCCACCGT 59.726 47.619 0.00 0.00 43.26 4.83
127 128 2.492881 TGAGATTTACGAAGCCACCGTA 59.507 45.455 0.00 0.00 40.95 4.02
128 129 3.114065 GAGATTTACGAAGCCACCGTAG 58.886 50.000 0.00 0.00 42.42 3.51
129 130 2.756760 AGATTTACGAAGCCACCGTAGA 59.243 45.455 0.00 0.00 42.42 2.59
130 131 2.642139 TTTACGAAGCCACCGTAGAG 57.358 50.000 0.00 0.00 42.42 2.43
131 132 1.825090 TTACGAAGCCACCGTAGAGA 58.175 50.000 0.00 0.00 42.42 3.10
132 133 2.048444 TACGAAGCCACCGTAGAGAT 57.952 50.000 0.00 0.00 40.95 2.75
133 134 1.183549 ACGAAGCCACCGTAGAGATT 58.816 50.000 0.00 0.00 38.61 2.40
134 135 1.549170 ACGAAGCCACCGTAGAGATTT 59.451 47.619 0.00 0.00 38.61 2.17
135 136 2.756760 ACGAAGCCACCGTAGAGATTTA 59.243 45.455 0.00 0.00 38.61 1.40
136 137 3.114065 CGAAGCCACCGTAGAGATTTAC 58.886 50.000 0.00 0.00 0.00 2.01
137 138 2.865343 AGCCACCGTAGAGATTTACG 57.135 50.000 0.00 0.00 44.46 3.18
146 147 2.295253 AGAGATTTACGAAGCCACCG 57.705 50.000 0.00 0.00 0.00 4.94
147 148 1.549170 AGAGATTTACGAAGCCACCGT 59.451 47.619 0.00 0.00 43.26 4.83
148 149 2.756760 AGAGATTTACGAAGCCACCGTA 59.243 45.455 0.00 0.00 40.95 4.02
149 150 3.114065 GAGATTTACGAAGCCACCGTAG 58.886 50.000 0.00 0.00 42.42 3.51
161 162 3.494336 CCGTAGGCGTCTCGTCGT 61.494 66.667 0.00 0.00 46.14 4.34
162 163 2.021106 CGTAGGCGTCTCGTCGTC 59.979 66.667 0.00 0.00 36.23 4.20
163 164 2.021106 GTAGGCGTCTCGTCGTCG 59.979 66.667 0.00 0.00 40.52 5.12
164 165 2.125952 TAGGCGTCTCGTCGTCGA 60.126 61.111 4.42 4.42 44.12 4.20
165 166 2.447887 TAGGCGTCTCGTCGTCGAC 61.448 63.158 15.51 15.51 41.35 4.20
185 186 2.928416 GGAACGTTTCCTCCCACTG 58.072 57.895 0.46 0.00 46.57 3.66
186 187 0.395312 GGAACGTTTCCTCCCACTGA 59.605 55.000 0.46 0.00 46.57 3.41
187 188 1.202722 GGAACGTTTCCTCCCACTGAA 60.203 52.381 0.46 0.00 46.57 3.02
188 189 2.567985 GAACGTTTCCTCCCACTGAAA 58.432 47.619 0.46 0.00 0.00 2.69
189 190 2.256117 ACGTTTCCTCCCACTGAAAG 57.744 50.000 0.00 0.00 42.29 2.62
190 191 0.875059 CGTTTCCTCCCACTGAAAGC 59.125 55.000 0.00 0.00 37.60 3.51
191 192 1.813862 CGTTTCCTCCCACTGAAAGCA 60.814 52.381 0.00 0.00 37.60 3.91
192 193 1.609072 GTTTCCTCCCACTGAAAGCAC 59.391 52.381 0.00 0.00 37.60 4.40
193 194 0.843309 TTCCTCCCACTGAAAGCACA 59.157 50.000 0.00 0.00 37.60 4.57
194 195 1.067295 TCCTCCCACTGAAAGCACAT 58.933 50.000 0.00 0.00 37.60 3.21
195 196 1.003580 TCCTCCCACTGAAAGCACATC 59.996 52.381 0.00 0.00 37.60 3.06
196 197 1.271543 CCTCCCACTGAAAGCACATCA 60.272 52.381 0.00 0.00 37.60 3.07
197 198 1.808945 CTCCCACTGAAAGCACATCAC 59.191 52.381 0.00 0.00 37.60 3.06
198 199 0.883833 CCCACTGAAAGCACATCACC 59.116 55.000 0.00 0.00 37.60 4.02
199 200 0.518636 CCACTGAAAGCACATCACCG 59.481 55.000 0.00 0.00 37.60 4.94
200 201 0.518636 CACTGAAAGCACATCACCGG 59.481 55.000 0.00 0.00 37.60 5.28
201 202 0.396435 ACTGAAAGCACATCACCGGA 59.604 50.000 9.46 0.00 37.60 5.14
202 203 1.202758 ACTGAAAGCACATCACCGGAA 60.203 47.619 9.46 0.00 37.60 4.30
203 204 1.879380 CTGAAAGCACATCACCGGAAA 59.121 47.619 9.46 0.00 0.00 3.13
204 205 2.489329 CTGAAAGCACATCACCGGAAAT 59.511 45.455 9.46 0.00 0.00 2.17
205 206 2.487762 TGAAAGCACATCACCGGAAATC 59.512 45.455 9.46 0.00 0.00 2.17
206 207 1.463674 AAGCACATCACCGGAAATCC 58.536 50.000 9.46 0.00 0.00 3.01
207 208 0.620556 AGCACATCACCGGAAATCCT 59.379 50.000 9.46 0.00 0.00 3.24
208 209 0.734889 GCACATCACCGGAAATCCTG 59.265 55.000 9.46 0.00 0.00 3.86
209 210 1.678728 GCACATCACCGGAAATCCTGA 60.679 52.381 9.46 0.00 0.00 3.86
210 211 2.710377 CACATCACCGGAAATCCTGAA 58.290 47.619 9.46 0.00 0.00 3.02
211 212 2.679837 CACATCACCGGAAATCCTGAAG 59.320 50.000 9.46 0.00 0.00 3.02
212 213 2.292267 CATCACCGGAAATCCTGAAGG 58.708 52.381 9.46 0.00 0.00 3.46
224 225 2.467880 TCCTGAAGGATACCACTGTCC 58.532 52.381 0.00 0.00 39.78 4.02
225 226 2.187958 CCTGAAGGATACCACTGTCCA 58.812 52.381 0.00 0.00 36.96 4.02
226 227 2.093447 CCTGAAGGATACCACTGTCCAC 60.093 54.545 0.00 0.00 36.96 4.02
227 228 1.906574 TGAAGGATACCACTGTCCACC 59.093 52.381 0.00 0.00 36.96 4.61
228 229 2.188817 GAAGGATACCACTGTCCACCT 58.811 52.381 0.00 0.00 36.96 4.00
229 230 3.245839 TGAAGGATACCACTGTCCACCTA 60.246 47.826 0.00 0.00 36.96 3.08
230 231 3.484953 AGGATACCACTGTCCACCTAA 57.515 47.619 0.00 0.00 36.96 2.69
231 232 3.105283 AGGATACCACTGTCCACCTAAC 58.895 50.000 0.00 0.00 36.96 2.34
232 233 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
233 234 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
234 235 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
235 236 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
236 237 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
237 238 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
238 239 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
239 240 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
240 241 3.846588 ACTGTCCACCTAACCATCTCAAT 59.153 43.478 0.00 0.00 0.00 2.57
241 242 4.080863 ACTGTCCACCTAACCATCTCAATC 60.081 45.833 0.00 0.00 0.00 2.67
242 243 3.843619 TGTCCACCTAACCATCTCAATCA 59.156 43.478 0.00 0.00 0.00 2.57
243 244 4.192317 GTCCACCTAACCATCTCAATCAC 58.808 47.826 0.00 0.00 0.00 3.06
244 245 3.843619 TCCACCTAACCATCTCAATCACA 59.156 43.478 0.00 0.00 0.00 3.58
245 246 4.474651 TCCACCTAACCATCTCAATCACAT 59.525 41.667 0.00 0.00 0.00 3.21
246 247 4.577693 CCACCTAACCATCTCAATCACATG 59.422 45.833 0.00 0.00 0.00 3.21
247 248 5.188434 CACCTAACCATCTCAATCACATGT 58.812 41.667 0.00 0.00 0.00 3.21
248 249 5.649395 CACCTAACCATCTCAATCACATGTT 59.351 40.000 0.00 0.00 0.00 2.71
249 250 5.649395 ACCTAACCATCTCAATCACATGTTG 59.351 40.000 0.00 0.00 0.00 3.33
250 251 5.066893 CCTAACCATCTCAATCACATGTTGG 59.933 44.000 0.00 0.88 0.00 3.77
251 252 4.038271 ACCATCTCAATCACATGTTGGT 57.962 40.909 8.45 8.45 0.00 3.67
252 253 4.410099 ACCATCTCAATCACATGTTGGTT 58.590 39.130 8.45 0.00 32.48 3.67
253 254 4.460382 ACCATCTCAATCACATGTTGGTTC 59.540 41.667 8.45 0.00 32.48 3.62
254 255 4.437794 CCATCTCAATCACATGTTGGTTCG 60.438 45.833 0.00 0.00 0.00 3.95
255 256 2.483877 TCTCAATCACATGTTGGTTCGC 59.516 45.455 0.00 0.00 0.00 4.70
256 257 2.225467 TCAATCACATGTTGGTTCGCA 58.775 42.857 0.00 0.00 0.00 5.10
257 258 2.620585 TCAATCACATGTTGGTTCGCAA 59.379 40.909 0.00 0.00 0.00 4.85
258 259 2.704725 ATCACATGTTGGTTCGCAAC 57.295 45.000 0.00 0.00 0.00 4.17
269 270 2.693267 GTTCGCAACCTCCTATTCCT 57.307 50.000 0.00 0.00 0.00 3.36
270 271 2.987232 GTTCGCAACCTCCTATTCCTT 58.013 47.619 0.00 0.00 0.00 3.36
271 272 2.937149 GTTCGCAACCTCCTATTCCTTC 59.063 50.000 0.00 0.00 0.00 3.46
308 309 3.489398 CCACTATAACTCTCTGGCGACAC 60.489 52.174 0.00 0.00 35.60 3.67
309 310 3.128764 CACTATAACTCTCTGGCGACACA 59.871 47.826 0.00 0.00 35.60 3.72
312 313 2.550830 AACTCTCTGGCGACACAAAT 57.449 45.000 0.00 0.00 35.60 2.32
313 314 1.800805 ACTCTCTGGCGACACAAATG 58.199 50.000 0.00 0.00 35.60 2.32
314 315 1.344438 ACTCTCTGGCGACACAAATGA 59.656 47.619 0.00 0.00 35.60 2.57
315 316 1.728971 CTCTCTGGCGACACAAATGAC 59.271 52.381 0.00 0.00 35.60 3.06
316 317 1.069978 TCTCTGGCGACACAAATGACA 59.930 47.619 0.00 0.00 35.60 3.58
317 318 1.195448 CTCTGGCGACACAAATGACAC 59.805 52.381 0.00 0.00 35.60 3.67
318 319 0.943673 CTGGCGACACAAATGACACA 59.056 50.000 0.00 0.00 35.60 3.72
327 335 2.720578 CACAAATGACACATTGCGTCAC 59.279 45.455 9.55 0.00 45.64 3.67
334 342 0.661187 CACATTGCGTCACTTGCCAC 60.661 55.000 0.00 0.00 0.00 5.01
340 348 2.515901 GTCACTTGCCACCCACCT 59.484 61.111 0.00 0.00 0.00 4.00
398 406 4.941263 CCCTTAACCAACTGATGATTTCGA 59.059 41.667 0.00 0.00 0.00 3.71
456 474 1.349688 TCCCCGTACAGCTGACAAAAT 59.650 47.619 23.35 0.00 0.00 1.82
457 475 1.468520 CCCCGTACAGCTGACAAAATG 59.531 52.381 23.35 5.47 0.00 2.32
514 535 2.638556 AGATCACAGACGCACAGTAC 57.361 50.000 0.00 0.00 0.00 2.73
541 562 1.766496 GATGGACCCAAAGTATCGGGA 59.234 52.381 0.45 0.00 46.34 5.14
569 590 6.294843 GGCCAGATAGGAAGTTGAGTAGATAC 60.295 46.154 0.00 0.00 41.22 2.24
570 591 6.492087 GCCAGATAGGAAGTTGAGTAGATACT 59.508 42.308 0.00 0.00 41.22 2.12
571 592 7.308951 GCCAGATAGGAAGTTGAGTAGATACTC 60.309 44.444 12.19 12.19 45.81 2.59
572 593 7.942341 CCAGATAGGAAGTTGAGTAGATACTCT 59.058 40.741 18.27 0.00 45.81 3.24
617 638 4.835615 ACTTAGCATCGGTTAGGATCATCT 59.164 41.667 0.00 0.00 0.00 2.90
619 640 4.264460 AGCATCGGTTAGGATCATCTTC 57.736 45.455 0.00 0.00 0.00 2.87
679 709 2.438975 ACCGATGGCATGGCAGTG 60.439 61.111 27.02 20.12 0.00 3.66
849 879 1.797025 GCCTCGACACATATAAGCCC 58.203 55.000 0.00 0.00 0.00 5.19
850 880 1.935300 GCCTCGACACATATAAGCCCG 60.935 57.143 0.00 0.00 0.00 6.13
852 882 1.611977 CTCGACACATATAAGCCCGGA 59.388 52.381 0.73 0.00 0.00 5.14
853 883 1.338973 TCGACACATATAAGCCCGGAC 59.661 52.381 0.73 0.00 0.00 4.79
859 889 0.546988 ATATAAGCCCGGACCCTCCC 60.547 60.000 0.73 0.00 31.13 4.30
1005 1037 2.049475 GAGACGAGGGGACGATGACG 62.049 65.000 0.00 0.00 45.75 4.35
1272 1304 0.320374 TCTTCACCTGGTACGCCTTG 59.680 55.000 0.00 0.00 35.27 3.61
1289 1328 4.406943 GCCTTGCGTTTCTTTCTATTCTG 58.593 43.478 0.00 0.00 0.00 3.02
1292 1331 6.348213 GCCTTGCGTTTCTTTCTATTCTGTTA 60.348 38.462 0.00 0.00 0.00 2.41
1297 1336 8.015087 TGCGTTTCTTTCTATTCTGTTATGTTG 58.985 33.333 0.00 0.00 0.00 3.33
1305 1344 9.787435 TTTCTATTCTGTTATGTTGTTACTGGT 57.213 29.630 0.00 0.00 0.00 4.00
1312 1351 8.788806 TCTGTTATGTTGTTACTGGTAAAATGG 58.211 33.333 0.00 0.00 0.00 3.16
1313 1352 8.693120 TGTTATGTTGTTACTGGTAAAATGGA 57.307 30.769 0.00 0.00 0.00 3.41
1314 1353 9.132923 TGTTATGTTGTTACTGGTAAAATGGAA 57.867 29.630 0.00 0.00 0.00 3.53
1315 1354 9.620660 GTTATGTTGTTACTGGTAAAATGGAAG 57.379 33.333 0.00 0.00 0.00 3.46
1317 1356 6.130569 TGTTGTTACTGGTAAAATGGAAGGT 58.869 36.000 0.00 0.00 0.00 3.50
1318 1357 7.288560 TGTTGTTACTGGTAAAATGGAAGGTA 58.711 34.615 0.00 0.00 0.00 3.08
1333 1395 4.166725 TGGAAGGTAGGATCATTCTGCATT 59.833 41.667 0.00 0.00 0.00 3.56
1334 1396 4.518211 GGAAGGTAGGATCATTCTGCATTG 59.482 45.833 0.00 0.00 0.00 2.82
1335 1397 3.484407 AGGTAGGATCATTCTGCATTGC 58.516 45.455 0.46 0.46 0.00 3.56
1336 1398 2.225019 GGTAGGATCATTCTGCATTGCG 59.775 50.000 3.84 0.00 0.00 4.85
1337 1399 2.048444 AGGATCATTCTGCATTGCGT 57.952 45.000 3.84 0.00 0.00 5.24
1338 1400 3.198409 AGGATCATTCTGCATTGCGTA 57.802 42.857 3.84 0.00 0.00 4.42
1339 1401 2.874701 AGGATCATTCTGCATTGCGTAC 59.125 45.455 3.84 0.00 0.00 3.67
1341 1403 4.058124 GGATCATTCTGCATTGCGTACTA 58.942 43.478 3.84 0.00 0.00 1.82
1342 1404 4.084328 GGATCATTCTGCATTGCGTACTAC 60.084 45.833 3.84 0.00 0.00 2.73
1343 1405 4.123497 TCATTCTGCATTGCGTACTACT 57.877 40.909 3.84 0.00 0.00 2.57
1344 1406 5.257082 TCATTCTGCATTGCGTACTACTA 57.743 39.130 3.84 0.00 0.00 1.82
1345 1407 5.041287 TCATTCTGCATTGCGTACTACTAC 58.959 41.667 3.84 0.00 0.00 2.73
1879 1947 1.069432 GTGCAGAACGAGTACGACTCA 60.069 52.381 13.14 0.00 45.30 3.41
1993 2061 2.606587 GGGGGTCAGCACCATCACT 61.607 63.158 0.00 0.00 45.94 3.41
2186 2254 1.078918 CGCACCATCAAGCTCTCCA 60.079 57.895 0.00 0.00 0.00 3.86
2187 2255 1.088340 CGCACCATCAAGCTCTCCAG 61.088 60.000 0.00 0.00 0.00 3.86
2251 2319 3.239253 GTGTCCCACACCGACCCT 61.239 66.667 0.00 0.00 43.05 4.34
2407 2475 4.393062 CGCACCTACATTGAGATTGTCTTT 59.607 41.667 0.00 0.00 0.00 2.52
2444 2512 0.608130 CATCGACACCTTCCACCTCA 59.392 55.000 0.00 0.00 0.00 3.86
2510 2595 1.064654 GCAACTACTAAGCTGCATGCC 59.935 52.381 16.68 0.00 43.07 4.40
2807 2915 2.356135 GAGTACAACATGCCCGACAAT 58.644 47.619 0.00 0.00 0.00 2.71
2906 3014 3.202151 TCCATTAATTCCACTCCACTCCC 59.798 47.826 0.00 0.00 0.00 4.30
2929 3037 1.063616 CCATGAGAGAACGCTTGCATG 59.936 52.381 0.00 0.00 36.52 4.06
2930 3038 0.731417 ATGAGAGAACGCTTGCATGC 59.269 50.000 11.82 11.82 0.00 4.06
2931 3039 0.603439 TGAGAGAACGCTTGCATGCA 60.603 50.000 18.46 18.46 0.00 3.96
2932 3040 0.731417 GAGAGAACGCTTGCATGCAT 59.269 50.000 23.37 5.68 0.00 3.96
3080 3190 9.683651 CTTTTCGAGGAAAATAAAAACAACAAC 57.316 29.630 4.20 0.00 40.14 3.32
3110 3220 4.094646 ATCGTCATGTGGGCGCCA 62.095 61.111 30.85 12.04 0.00 5.69
3414 3527 5.407502 GTTCACTGTACCTTTGCAAAACTT 58.592 37.500 13.84 2.86 0.00 2.66
3460 3573 1.078709 AACTGTCACAATGGATCGCG 58.921 50.000 0.00 0.00 0.00 5.87
3608 3754 1.685224 ATGGACTCCATGGCGTTGT 59.315 52.632 9.15 4.10 43.39 3.32
3642 3788 0.868406 GCACAACAGGAGAAGAACCG 59.132 55.000 0.00 0.00 0.00 4.44
3659 3813 1.068748 ACCGTAGTACTTGCTGACACG 60.069 52.381 0.00 2.61 0.00 4.49
3660 3814 1.614385 CGTAGTACTTGCTGACACGG 58.386 55.000 0.00 0.00 0.00 4.94
3667 3821 3.414136 TTGCTGACACGGCACCCTT 62.414 57.895 4.70 0.00 46.04 3.95
3668 3822 3.050275 GCTGACACGGCACCCTTC 61.050 66.667 0.00 0.00 35.55 3.46
3682 3836 2.556287 CTTCGCCAGAACGTTGCC 59.444 61.111 5.00 0.00 32.15 4.52
3689 3843 0.871722 CCAGAACGTTGCCGATGAAA 59.128 50.000 5.00 0.00 37.88 2.69
3691 3845 2.095263 CCAGAACGTTGCCGATGAAAAT 60.095 45.455 5.00 0.00 37.88 1.82
3692 3846 3.163594 CAGAACGTTGCCGATGAAAATC 58.836 45.455 5.00 0.00 37.88 2.17
3721 3875 6.128929 GGGATCGCACAATAAAAACTTTTGAC 60.129 38.462 4.64 0.00 0.00 3.18
3725 3879 5.888355 CGCACAATAAAAACTTTTGACAACG 59.112 36.000 0.00 0.00 0.00 4.10
3781 3935 3.933048 GACGACGGGAGGTGAGGGA 62.933 68.421 0.00 0.00 0.00 4.20
3782 3936 2.442272 CGACGGGAGGTGAGGGAT 60.442 66.667 0.00 0.00 0.00 3.85
3784 3938 1.173444 CGACGGGAGGTGAGGGATAG 61.173 65.000 0.00 0.00 0.00 2.08
3787 3941 0.106167 CGGGAGGTGAGGGATAGTGA 60.106 60.000 0.00 0.00 0.00 3.41
3788 3942 1.688311 CGGGAGGTGAGGGATAGTGAA 60.688 57.143 0.00 0.00 0.00 3.18
3789 3943 2.478292 GGGAGGTGAGGGATAGTGAAA 58.522 52.381 0.00 0.00 0.00 2.69
3791 3945 3.459969 GGGAGGTGAGGGATAGTGAAAAT 59.540 47.826 0.00 0.00 0.00 1.82
3792 3946 4.445019 GGGAGGTGAGGGATAGTGAAAATC 60.445 50.000 0.00 0.00 0.00 2.17
3794 3948 5.163152 GGAGGTGAGGGATAGTGAAAATCAT 60.163 44.000 0.00 0.00 0.00 2.45
3795 3949 6.043243 GGAGGTGAGGGATAGTGAAAATCATA 59.957 42.308 0.00 0.00 0.00 2.15
3798 3956 8.506083 AGGTGAGGGATAGTGAAAATCATATTT 58.494 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.476862 CGTATATATGAGCGCTTGTGTCT 58.523 43.478 13.26 0.00 0.00 3.41
1 2 3.059570 GCGTATATATGAGCGCTTGTGTC 59.940 47.826 13.26 0.00 45.48 3.67
4 5 2.251040 CGCGTATATATGAGCGCTTGT 58.749 47.619 13.26 5.98 46.56 3.16
5 6 2.959586 CGCGTATATATGAGCGCTTG 57.040 50.000 13.26 7.35 46.56 4.01
10 11 4.352039 AGTGTATGCGCGTATATATGAGC 58.648 43.478 19.79 20.14 38.31 4.26
11 12 5.452623 GTGAGTGTATGCGCGTATATATGAG 59.547 44.000 19.79 3.76 0.00 2.90
13 14 4.499399 GGTGAGTGTATGCGCGTATATATG 59.501 45.833 19.79 0.00 0.00 1.78
14 15 4.439700 GGGTGAGTGTATGCGCGTATATAT 60.440 45.833 19.79 9.03 0.00 0.86
15 16 3.119743 GGGTGAGTGTATGCGCGTATATA 60.120 47.826 19.79 14.59 0.00 0.86
16 17 2.352421 GGGTGAGTGTATGCGCGTATAT 60.352 50.000 19.79 4.31 0.00 0.86
18 19 0.249322 GGGTGAGTGTATGCGCGTAT 60.249 55.000 15.52 15.52 0.00 3.06
19 20 1.140161 GGGTGAGTGTATGCGCGTA 59.860 57.895 8.43 4.92 0.00 4.42
20 21 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
21 22 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
22 23 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
23 24 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
24 25 3.118408 TGTTCATAGGGGTGAGTGTATGC 60.118 47.826 0.00 0.00 0.00 3.14
25 26 4.081142 TGTGTTCATAGGGGTGAGTGTATG 60.081 45.833 0.00 0.00 0.00 2.39
26 27 4.081087 GTGTGTTCATAGGGGTGAGTGTAT 60.081 45.833 0.00 0.00 0.00 2.29
27 28 3.259876 GTGTGTTCATAGGGGTGAGTGTA 59.740 47.826 0.00 0.00 0.00 2.90
28 29 2.038557 GTGTGTTCATAGGGGTGAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
29 30 2.038426 TGTGTGTTCATAGGGGTGAGTG 59.962 50.000 0.00 0.00 0.00 3.51
30 31 2.038557 GTGTGTGTTCATAGGGGTGAGT 59.961 50.000 0.00 0.00 0.00 3.41
31 32 2.038426 TGTGTGTGTTCATAGGGGTGAG 59.962 50.000 0.00 0.00 0.00 3.51
32 33 2.050918 TGTGTGTGTTCATAGGGGTGA 58.949 47.619 0.00 0.00 0.00 4.02
33 34 2.151202 GTGTGTGTGTTCATAGGGGTG 58.849 52.381 0.00 0.00 0.00 4.61
34 35 1.270625 CGTGTGTGTGTTCATAGGGGT 60.271 52.381 0.00 0.00 0.00 4.95
35 36 1.438651 CGTGTGTGTGTTCATAGGGG 58.561 55.000 0.00 0.00 0.00 4.79
36 37 0.796312 GCGTGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
37 38 1.194547 GTGCGTGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
38 39 1.864082 TGTGCGTGTGTGTGTTCATAG 59.136 47.619 0.00 0.00 0.00 2.23
39 40 1.595328 GTGTGCGTGTGTGTGTTCATA 59.405 47.619 0.00 0.00 0.00 2.15
40 41 0.376852 GTGTGCGTGTGTGTGTTCAT 59.623 50.000 0.00 0.00 0.00 2.57
41 42 1.640210 GGTGTGCGTGTGTGTGTTCA 61.640 55.000 0.00 0.00 0.00 3.18
42 43 1.061887 GGTGTGCGTGTGTGTGTTC 59.938 57.895 0.00 0.00 0.00 3.18
43 44 2.403378 GGGTGTGCGTGTGTGTGTT 61.403 57.895 0.00 0.00 0.00 3.32
44 45 1.962321 TAGGGTGTGCGTGTGTGTGT 61.962 55.000 0.00 0.00 0.00 3.72
45 46 1.227409 TAGGGTGTGCGTGTGTGTG 60.227 57.895 0.00 0.00 0.00 3.82
46 47 1.227438 GTAGGGTGTGCGTGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
47 48 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
48 49 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
49 50 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
50 51 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
51 52 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
52 53 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
53 54 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
54 55 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
55 56 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
56 57 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
57 58 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
58 59 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
59 60 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
60 61 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
61 62 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
62 63 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
63 64 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
64 65 1.048724 TTCGGAGGTGCTCATAGGGG 61.049 60.000 0.00 0.00 31.08 4.79
65 66 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
66 67 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
67 68 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
68 69 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
69 70 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
70 71 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
71 72 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
72 73 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
73 74 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
74 75 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
75 76 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
76 77 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
77 78 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
78 79 0.609957 TACCGGCTCAGTCTTTCGGA 60.610 55.000 0.00 0.00 42.94 4.55
79 80 0.460311 ATACCGGCTCAGTCTTTCGG 59.540 55.000 0.00 0.00 45.42 4.30
80 81 3.644884 ATATACCGGCTCAGTCTTTCG 57.355 47.619 0.00 0.00 0.00 3.46
81 82 6.926313 AGATAATATACCGGCTCAGTCTTTC 58.074 40.000 0.00 0.00 0.00 2.62
82 83 6.919775 AGATAATATACCGGCTCAGTCTTT 57.080 37.500 0.00 0.00 0.00 2.52
83 84 6.493802 TCAAGATAATATACCGGCTCAGTCTT 59.506 38.462 0.00 0.00 0.00 3.01
84 85 6.010850 TCAAGATAATATACCGGCTCAGTCT 58.989 40.000 0.00 0.00 0.00 3.24
85 86 6.151312 TCTCAAGATAATATACCGGCTCAGTC 59.849 42.308 0.00 0.00 0.00 3.51
86 87 6.010850 TCTCAAGATAATATACCGGCTCAGT 58.989 40.000 0.00 0.00 0.00 3.41
87 88 6.516739 TCTCAAGATAATATACCGGCTCAG 57.483 41.667 0.00 0.00 0.00 3.35
88 89 7.482169 AATCTCAAGATAATATACCGGCTCA 57.518 36.000 0.00 0.00 33.73 4.26
89 90 9.303537 GTAAATCTCAAGATAATATACCGGCTC 57.696 37.037 0.00 0.00 33.73 4.70
90 91 7.974501 CGTAAATCTCAAGATAATATACCGGCT 59.025 37.037 0.00 0.00 33.73 5.52
91 92 7.972277 TCGTAAATCTCAAGATAATATACCGGC 59.028 37.037 0.00 0.00 33.73 6.13
92 93 9.850628 TTCGTAAATCTCAAGATAATATACCGG 57.149 33.333 0.00 0.00 33.73 5.28
97 98 9.209175 GTGGCTTCGTAAATCTCAAGATAATAT 57.791 33.333 0.00 0.00 33.73 1.28
98 99 7.656137 GGTGGCTTCGTAAATCTCAAGATAATA 59.344 37.037 0.00 0.00 33.73 0.98
99 100 6.483640 GGTGGCTTCGTAAATCTCAAGATAAT 59.516 38.462 0.00 0.00 33.73 1.28
100 101 5.815740 GGTGGCTTCGTAAATCTCAAGATAA 59.184 40.000 0.00 0.00 33.73 1.75
101 102 5.357257 GGTGGCTTCGTAAATCTCAAGATA 58.643 41.667 0.00 0.00 33.73 1.98
102 103 4.192317 GGTGGCTTCGTAAATCTCAAGAT 58.808 43.478 0.00 0.00 36.07 2.40
103 104 3.596214 GGTGGCTTCGTAAATCTCAAGA 58.404 45.455 0.00 0.00 0.00 3.02
104 105 2.348666 CGGTGGCTTCGTAAATCTCAAG 59.651 50.000 0.00 0.00 0.00 3.02
105 106 2.289195 ACGGTGGCTTCGTAAATCTCAA 60.289 45.455 4.10 0.00 39.22 3.02
106 107 1.274167 ACGGTGGCTTCGTAAATCTCA 59.726 47.619 4.10 0.00 39.22 3.27
107 108 2.005971 ACGGTGGCTTCGTAAATCTC 57.994 50.000 4.10 0.00 39.22 2.75
108 109 2.756760 TCTACGGTGGCTTCGTAAATCT 59.243 45.455 12.25 0.00 41.62 2.40
109 110 3.114065 CTCTACGGTGGCTTCGTAAATC 58.886 50.000 12.25 0.00 41.62 2.17
110 111 2.756760 TCTCTACGGTGGCTTCGTAAAT 59.243 45.455 12.25 0.00 41.62 1.40
111 112 2.161855 TCTCTACGGTGGCTTCGTAAA 58.838 47.619 12.25 1.57 41.62 2.01
112 113 1.825090 TCTCTACGGTGGCTTCGTAA 58.175 50.000 12.25 5.32 41.62 3.18
113 114 2.048444 ATCTCTACGGTGGCTTCGTA 57.952 50.000 11.10 11.10 41.38 3.43
114 115 1.183549 AATCTCTACGGTGGCTTCGT 58.816 50.000 10.10 10.10 43.64 3.85
115 116 2.295253 AAATCTCTACGGTGGCTTCG 57.705 50.000 0.00 0.00 0.00 3.79
116 117 3.114065 CGTAAATCTCTACGGTGGCTTC 58.886 50.000 0.00 0.00 40.75 3.86
117 118 2.756760 TCGTAAATCTCTACGGTGGCTT 59.243 45.455 3.59 0.00 43.82 4.35
118 119 2.372264 TCGTAAATCTCTACGGTGGCT 58.628 47.619 3.59 0.00 43.82 4.75
119 120 2.857592 TCGTAAATCTCTACGGTGGC 57.142 50.000 3.59 0.00 43.82 5.01
120 121 3.114065 GCTTCGTAAATCTCTACGGTGG 58.886 50.000 3.59 0.00 43.82 4.61
121 122 3.114065 GGCTTCGTAAATCTCTACGGTG 58.886 50.000 3.59 0.00 43.82 4.94
122 123 2.756760 TGGCTTCGTAAATCTCTACGGT 59.243 45.455 3.59 0.00 43.82 4.83
123 124 3.114065 GTGGCTTCGTAAATCTCTACGG 58.886 50.000 3.59 0.00 43.82 4.02
124 125 3.114065 GGTGGCTTCGTAAATCTCTACG 58.886 50.000 0.00 0.00 44.78 3.51
125 126 3.114065 CGGTGGCTTCGTAAATCTCTAC 58.886 50.000 0.00 0.00 0.00 2.59
126 127 2.756760 ACGGTGGCTTCGTAAATCTCTA 59.243 45.455 4.10 0.00 39.22 2.43
127 128 1.549170 ACGGTGGCTTCGTAAATCTCT 59.451 47.619 4.10 0.00 39.22 3.10
128 129 2.005971 ACGGTGGCTTCGTAAATCTC 57.994 50.000 4.10 0.00 39.22 2.75
129 130 2.159142 CCTACGGTGGCTTCGTAAATCT 60.159 50.000 12.25 0.00 41.62 2.40
130 131 2.199236 CCTACGGTGGCTTCGTAAATC 58.801 52.381 12.25 0.00 41.62 2.17
131 132 2.304751 CCTACGGTGGCTTCGTAAAT 57.695 50.000 12.25 0.00 41.62 1.40
132 133 3.818586 CCTACGGTGGCTTCGTAAA 57.181 52.632 12.25 0.00 41.62 2.01
141 142 3.392595 GACGAGACGCCTACGGTGG 62.393 68.421 0.00 0.00 46.04 4.61
142 143 2.099831 GACGAGACGCCTACGGTG 59.900 66.667 0.00 0.00 46.04 4.94
143 144 3.494336 CGACGAGACGCCTACGGT 61.494 66.667 0.00 0.00 46.04 4.83
144 145 3.431683 GACGACGAGACGCCTACGG 62.432 68.421 0.00 0.00 46.04 4.02
145 146 3.747514 CGACGACGAGACGCCTACG 62.748 68.421 0.00 0.00 43.40 3.51
146 147 2.021106 CGACGACGAGACGCCTAC 59.979 66.667 0.00 0.00 42.66 3.18
147 148 2.125952 TCGACGACGAGACGCCTA 60.126 61.111 5.75 0.00 43.81 3.93
168 169 2.249844 TTCAGTGGGAGGAAACGTTC 57.750 50.000 0.00 0.00 0.00 3.95
169 170 2.572290 CTTTCAGTGGGAGGAAACGTT 58.428 47.619 0.00 0.00 0.00 3.99
170 171 1.814248 GCTTTCAGTGGGAGGAAACGT 60.814 52.381 0.00 0.00 0.00 3.99
171 172 0.875059 GCTTTCAGTGGGAGGAAACG 59.125 55.000 0.00 0.00 0.00 3.60
172 173 1.609072 GTGCTTTCAGTGGGAGGAAAC 59.391 52.381 0.00 0.00 0.00 2.78
173 174 1.214175 TGTGCTTTCAGTGGGAGGAAA 59.786 47.619 0.00 0.00 0.00 3.13
174 175 0.843309 TGTGCTTTCAGTGGGAGGAA 59.157 50.000 0.00 0.00 0.00 3.36
175 176 1.003580 GATGTGCTTTCAGTGGGAGGA 59.996 52.381 0.00 0.00 0.00 3.71
176 177 1.271543 TGATGTGCTTTCAGTGGGAGG 60.272 52.381 0.00 0.00 0.00 4.30
177 178 1.808945 GTGATGTGCTTTCAGTGGGAG 59.191 52.381 0.00 0.00 0.00 4.30
178 179 1.545428 GGTGATGTGCTTTCAGTGGGA 60.545 52.381 0.00 0.00 0.00 4.37
179 180 0.883833 GGTGATGTGCTTTCAGTGGG 59.116 55.000 0.00 0.00 0.00 4.61
180 181 0.518636 CGGTGATGTGCTTTCAGTGG 59.481 55.000 0.00 0.00 0.00 4.00
181 182 0.518636 CCGGTGATGTGCTTTCAGTG 59.481 55.000 0.00 0.00 0.00 3.66
182 183 0.396435 TCCGGTGATGTGCTTTCAGT 59.604 50.000 0.00 0.00 0.00 3.41
183 184 1.522668 TTCCGGTGATGTGCTTTCAG 58.477 50.000 0.00 0.00 0.00 3.02
184 185 1.974265 TTTCCGGTGATGTGCTTTCA 58.026 45.000 0.00 0.00 0.00 2.69
185 186 2.159379 GGATTTCCGGTGATGTGCTTTC 60.159 50.000 0.00 0.00 0.00 2.62
186 187 1.818674 GGATTTCCGGTGATGTGCTTT 59.181 47.619 0.00 0.00 0.00 3.51
187 188 1.004745 AGGATTTCCGGTGATGTGCTT 59.995 47.619 0.00 0.00 42.08 3.91
188 189 0.620556 AGGATTTCCGGTGATGTGCT 59.379 50.000 0.00 0.00 42.08 4.40
189 190 0.734889 CAGGATTTCCGGTGATGTGC 59.265 55.000 0.00 0.00 42.08 4.57
190 191 2.401583 TCAGGATTTCCGGTGATGTG 57.598 50.000 0.00 0.00 42.08 3.21
191 192 2.356125 CCTTCAGGATTTCCGGTGATGT 60.356 50.000 0.00 0.00 42.08 3.06
192 193 2.092968 TCCTTCAGGATTTCCGGTGATG 60.093 50.000 0.00 0.00 39.78 3.07
193 194 2.196595 TCCTTCAGGATTTCCGGTGAT 58.803 47.619 0.00 0.00 39.78 3.06
194 195 1.651737 TCCTTCAGGATTTCCGGTGA 58.348 50.000 0.00 0.00 39.78 4.02
205 206 2.093447 GTGGACAGTGGTATCCTTCAGG 60.093 54.545 0.00 0.00 35.86 3.86
206 207 2.093447 GGTGGACAGTGGTATCCTTCAG 60.093 54.545 0.00 0.00 35.86 3.02
207 208 1.906574 GGTGGACAGTGGTATCCTTCA 59.093 52.381 0.00 0.00 35.86 3.02
208 209 2.188817 AGGTGGACAGTGGTATCCTTC 58.811 52.381 0.00 0.00 35.86 3.46
209 210 2.344093 AGGTGGACAGTGGTATCCTT 57.656 50.000 0.00 0.00 35.86 3.36
210 211 3.105283 GTTAGGTGGACAGTGGTATCCT 58.895 50.000 0.00 0.00 35.86 3.24
211 212 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
212 213 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
213 214 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
214 215 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
215 216 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
216 217 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
217 218 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
218 219 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
219 220 3.981071 TTGAGATGGTTAGGTGGACAG 57.019 47.619 0.00 0.00 0.00 3.51
220 221 3.843619 TGATTGAGATGGTTAGGTGGACA 59.156 43.478 0.00 0.00 0.00 4.02
221 222 4.192317 GTGATTGAGATGGTTAGGTGGAC 58.808 47.826 0.00 0.00 0.00 4.02
222 223 3.843619 TGTGATTGAGATGGTTAGGTGGA 59.156 43.478 0.00 0.00 0.00 4.02
223 224 4.220693 TGTGATTGAGATGGTTAGGTGG 57.779 45.455 0.00 0.00 0.00 4.61
224 225 5.188434 ACATGTGATTGAGATGGTTAGGTG 58.812 41.667 0.00 0.00 29.21 4.00
225 226 5.441718 ACATGTGATTGAGATGGTTAGGT 57.558 39.130 0.00 0.00 29.21 3.08
226 227 5.066893 CCAACATGTGATTGAGATGGTTAGG 59.933 44.000 0.00 0.00 29.21 2.69
227 228 5.649395 ACCAACATGTGATTGAGATGGTTAG 59.351 40.000 8.45 0.00 36.57 2.34
228 229 5.569355 ACCAACATGTGATTGAGATGGTTA 58.431 37.500 8.45 0.00 36.57 2.85
229 230 4.410099 ACCAACATGTGATTGAGATGGTT 58.590 39.130 8.45 0.00 36.57 3.67
230 231 4.038271 ACCAACATGTGATTGAGATGGT 57.962 40.909 8.45 8.45 35.20 3.55
231 232 4.437794 CGAACCAACATGTGATTGAGATGG 60.438 45.833 0.00 2.93 29.21 3.51
232 233 4.655027 CGAACCAACATGTGATTGAGATG 58.345 43.478 0.00 0.00 0.00 2.90
233 234 3.127548 GCGAACCAACATGTGATTGAGAT 59.872 43.478 0.00 0.00 0.00 2.75
234 235 2.483877 GCGAACCAACATGTGATTGAGA 59.516 45.455 0.00 0.00 0.00 3.27
235 236 2.226200 TGCGAACCAACATGTGATTGAG 59.774 45.455 0.00 0.00 0.00 3.02
236 237 2.225467 TGCGAACCAACATGTGATTGA 58.775 42.857 0.00 0.00 0.00 2.57
237 238 2.702898 TGCGAACCAACATGTGATTG 57.297 45.000 0.00 0.00 0.00 2.67
250 251 2.693267 AGGAATAGGAGGTTGCGAAC 57.307 50.000 0.00 0.00 0.00 3.95
251 252 2.838202 AGAAGGAATAGGAGGTTGCGAA 59.162 45.455 0.00 0.00 0.00 4.70
252 253 2.168521 CAGAAGGAATAGGAGGTTGCGA 59.831 50.000 0.00 0.00 0.00 5.10
253 254 2.168521 TCAGAAGGAATAGGAGGTTGCG 59.831 50.000 0.00 0.00 0.00 4.85
254 255 3.914426 TCAGAAGGAATAGGAGGTTGC 57.086 47.619 0.00 0.00 0.00 4.17
255 256 5.841237 TCCTATCAGAAGGAATAGGAGGTTG 59.159 44.000 6.96 0.00 42.83 3.77
256 257 6.044411 TCCTATCAGAAGGAATAGGAGGTT 57.956 41.667 6.96 0.00 42.83 3.50
257 258 5.688220 TCCTATCAGAAGGAATAGGAGGT 57.312 43.478 6.96 0.00 42.83 3.85
260 261 7.168022 TCTTCTCCTATCAGAAGGAATAGGA 57.832 40.000 9.74 9.99 46.61 2.94
261 262 7.124147 GGATCTTCTCCTATCAGAAGGAATAGG 59.876 44.444 9.74 2.61 46.61 2.57
262 263 7.673504 TGGATCTTCTCCTATCAGAAGGAATAG 59.326 40.741 9.74 2.90 46.61 1.73
263 264 7.453126 GTGGATCTTCTCCTATCAGAAGGAATA 59.547 40.741 9.74 0.00 46.61 1.75
264 265 6.269769 GTGGATCTTCTCCTATCAGAAGGAAT 59.730 42.308 9.74 0.00 46.61 3.01
265 266 5.600484 GTGGATCTTCTCCTATCAGAAGGAA 59.400 44.000 9.74 0.00 46.61 3.36
266 267 5.103301 AGTGGATCTTCTCCTATCAGAAGGA 60.103 44.000 9.74 1.35 46.61 3.36
267 268 5.147032 AGTGGATCTTCTCCTATCAGAAGG 58.853 45.833 9.74 0.00 46.61 3.46
269 270 9.303116 GTTATAGTGGATCTTCTCCTATCAGAA 57.697 37.037 0.00 0.00 45.21 3.02
270 271 8.674173 AGTTATAGTGGATCTTCTCCTATCAGA 58.326 37.037 0.00 0.00 45.21 3.27
271 272 8.877864 AGTTATAGTGGATCTTCTCCTATCAG 57.122 38.462 0.00 0.00 45.21 2.90
289 290 4.371855 TTGTGTCGCCAGAGAGTTATAG 57.628 45.455 0.00 0.00 0.00 1.31
292 293 3.006430 TCATTTGTGTCGCCAGAGAGTTA 59.994 43.478 0.00 0.00 0.00 2.24
297 298 1.195448 GTGTCATTTGTGTCGCCAGAG 59.805 52.381 0.00 0.00 0.00 3.35
313 314 0.385974 GGCAAGTGACGCAATGTGTC 60.386 55.000 19.01 19.01 42.60 3.67
314 315 1.100463 TGGCAAGTGACGCAATGTGT 61.100 50.000 0.00 0.00 0.00 3.72
315 316 0.661187 GTGGCAAGTGACGCAATGTG 60.661 55.000 0.00 0.00 32.77 3.21
316 317 1.654220 GTGGCAAGTGACGCAATGT 59.346 52.632 0.00 0.00 32.77 2.71
317 318 1.081242 GGTGGCAAGTGACGCAATG 60.081 57.895 0.00 0.00 34.61 2.82
318 319 2.268076 GGGTGGCAAGTGACGCAAT 61.268 57.895 0.00 0.00 34.61 3.56
327 335 0.607489 CTCTTCAGGTGGGTGGCAAG 60.607 60.000 0.00 0.00 0.00 4.01
340 348 1.835531 GATTACCCCGAACCCTCTTCA 59.164 52.381 0.00 0.00 0.00 3.02
410 418 3.303132 CGTACAACTCACAACCTTGCTTC 60.303 47.826 0.00 0.00 0.00 3.86
541 562 4.561752 ACTCAACTTCCTATCTGGCCTAT 58.438 43.478 3.32 0.00 35.26 2.57
569 590 4.062293 CAGGTCGATCCTAGACAGTAGAG 58.938 52.174 6.28 0.00 46.24 2.43
570 591 3.181453 CCAGGTCGATCCTAGACAGTAGA 60.181 52.174 6.28 0.00 46.24 2.59
571 592 3.142951 CCAGGTCGATCCTAGACAGTAG 58.857 54.545 6.28 0.00 46.24 2.57
572 593 2.775960 TCCAGGTCGATCCTAGACAGTA 59.224 50.000 6.28 0.00 46.24 2.74
573 594 1.564818 TCCAGGTCGATCCTAGACAGT 59.435 52.381 6.28 0.00 46.24 3.55
574 595 2.350057 TCCAGGTCGATCCTAGACAG 57.650 55.000 6.28 0.00 46.24 3.51
617 638 4.858680 TGCCGTTGGTGCCACGAA 62.859 61.111 12.37 0.00 0.00 3.85
619 640 3.822403 CTTTGCCGTTGGTGCCACG 62.822 63.158 0.00 0.00 0.00 4.94
700 730 1.380246 TTCCTCCATGCATGCCACC 60.380 57.895 21.69 0.00 0.00 4.61
1272 1304 8.015658 ACAACATAACAGAATAGAAAGAAACGC 58.984 33.333 0.00 0.00 0.00 4.84
1289 1328 9.620660 CTTCCATTTTACCAGTAACAACATAAC 57.379 33.333 0.00 0.00 0.00 1.89
1292 1331 6.780522 ACCTTCCATTTTACCAGTAACAACAT 59.219 34.615 0.00 0.00 0.00 2.71
1297 1336 6.714278 TCCTACCTTCCATTTTACCAGTAAC 58.286 40.000 0.00 0.00 0.00 2.50
1301 1340 6.001449 TGATCCTACCTTCCATTTTACCAG 57.999 41.667 0.00 0.00 0.00 4.00
1305 1344 6.772716 GCAGAATGATCCTACCTTCCATTTTA 59.227 38.462 0.00 0.00 39.69 1.52
1306 1345 5.595952 GCAGAATGATCCTACCTTCCATTTT 59.404 40.000 0.00 0.00 39.69 1.82
1308 1347 4.166725 TGCAGAATGATCCTACCTTCCATT 59.833 41.667 0.00 0.00 39.69 3.16
1310 1349 3.114606 TGCAGAATGATCCTACCTTCCA 58.885 45.455 0.00 0.00 39.69 3.53
1312 1351 4.023365 GCAATGCAGAATGATCCTACCTTC 60.023 45.833 0.00 0.00 39.69 3.46
1313 1352 3.887716 GCAATGCAGAATGATCCTACCTT 59.112 43.478 0.00 0.00 39.69 3.50
1314 1353 3.484407 GCAATGCAGAATGATCCTACCT 58.516 45.455 0.00 0.00 39.69 3.08
1315 1354 2.225019 CGCAATGCAGAATGATCCTACC 59.775 50.000 5.91 0.00 39.69 3.18
1317 1356 3.198409 ACGCAATGCAGAATGATCCTA 57.802 42.857 5.91 0.00 39.69 2.94
1318 1357 2.048444 ACGCAATGCAGAATGATCCT 57.952 45.000 5.91 0.00 39.69 3.24
1336 1398 2.871133 TGCATGCACACGTAGTAGTAC 58.129 47.619 18.46 0.00 41.61 2.73
1337 1399 3.443976 CATGCATGCACACGTAGTAGTA 58.556 45.455 25.37 0.00 41.61 1.82
1338 1400 2.270923 CATGCATGCACACGTAGTAGT 58.729 47.619 25.37 0.00 41.61 2.73
1450 1518 3.437049 GGTCCTTGAACTGCATCTTGTAC 59.563 47.826 0.00 0.00 0.00 2.90
1783 1851 1.077429 GAGGGTGGTCTTGATGCCC 60.077 63.158 0.00 0.00 39.60 5.36
1993 2061 2.047750 TTGTAGCGCATCACGGCA 60.048 55.556 11.47 0.00 43.93 5.69
2251 2319 2.604686 AGCTTGAGGGGCGTCTCA 60.605 61.111 5.28 5.28 41.51 3.27
2377 2445 1.078426 AATGTAGGTGCGGTGCTCC 60.078 57.895 1.77 1.77 41.85 4.70
2407 2475 0.541998 TGCTCTTCTCGGGGTTCTCA 60.542 55.000 0.00 0.00 0.00 3.27
2510 2595 1.611006 ACAGACCCGATCGATGATCAG 59.389 52.381 18.66 7.59 38.84 2.90
2540 2636 1.078955 ATCCACCCATCCATCCATCC 58.921 55.000 0.00 0.00 0.00 3.51
2906 3014 1.649664 CAAGCGTTCTCTCATGGAGG 58.350 55.000 10.23 0.00 42.10 4.30
3025 3133 4.509600 GTGAACCTGACAAGAAGAAGAGTG 59.490 45.833 0.00 0.00 0.00 3.51
3029 3137 4.954875 AGAGTGAACCTGACAAGAAGAAG 58.045 43.478 0.00 0.00 0.00 2.85
3089 3199 2.528743 CGCCCACATGACGATGAGC 61.529 63.158 0.00 0.00 33.36 4.26
3110 3220 0.611062 TCCTCGTTCCGATGACAGGT 60.611 55.000 0.00 0.00 34.61 4.00
3172 3285 4.208686 GGCGTCCCGATCGAGCTT 62.209 66.667 18.66 0.00 0.00 3.74
3264 3377 2.992543 CACACAATAACCAATTTGCCCG 59.007 45.455 0.00 0.00 0.00 6.13
3336 3449 8.558973 AGTTAGAGAAAACAGAAGATGGAATG 57.441 34.615 0.00 0.00 0.00 2.67
3414 3527 4.513406 AAGGTACACTGAACCCAAAGAA 57.487 40.909 0.00 0.00 37.77 2.52
3542 3655 0.108774 TTGGTGTGTTCGGCCATACA 59.891 50.000 2.24 2.64 31.71 2.29
3608 3754 0.750249 TGTGCCGAAGTCTTGTCAGA 59.250 50.000 0.00 0.00 0.00 3.27
3642 3788 1.336517 TGCCGTGTCAGCAAGTACTAC 60.337 52.381 0.00 0.00 37.28 2.73
3660 3814 3.423154 CGTTCTGGCGAAGGGTGC 61.423 66.667 0.00 0.00 32.77 5.01
3702 3856 6.757162 ACGTTGTCAAAAGTTTTTATTGTGC 58.243 32.000 0.00 0.00 0.00 4.57
3721 3875 4.926860 TGTTGCATCTTCATAGACGTTG 57.073 40.909 0.00 0.00 31.99 4.10
3725 3879 6.054295 AGGAGAATGTTGCATCTTCATAGAC 58.946 40.000 0.00 0.00 31.99 2.59
3730 3884 4.005650 GTGAGGAGAATGTTGCATCTTCA 58.994 43.478 0.00 0.00 0.00 3.02
3768 3922 0.106167 TCACTATCCCTCACCTCCCG 60.106 60.000 0.00 0.00 0.00 5.14
3770 3924 4.164221 TGATTTTCACTATCCCTCACCTCC 59.836 45.833 0.00 0.00 0.00 4.30
3832 3990 8.834004 ACCATAGTTGTGTAGTTCCTATTAGA 57.166 34.615 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.