AutoCloner

Multiple sequence alignment - TraesCS3B01G371700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G371700	chr3B	100.000	7276	0	0	1	7276	584545469	584552744	0.000000e+00	13437.0
1	TraesCS3B01G371700	chr3B	96.711	821	27	0	6456	7276	584557650	584558470	0.000000e+00	1367.0
2	TraesCS3B01G371700	chr3B	95.312	64	3	0	5789	5852	76433104	76433041	1.290000e-17	102.0
3	TraesCS3B01G371700	chr3D	97.885	6479	107	14	1	6456	445632884	445639355	0.000000e+00	11178.0
4	TraesCS3B01G371700	chr3A	96.648	6504	159	24	1	6456	587402291	587408783	0.000000e+00	10748.0
5	TraesCS3B01G371700	chr7B	96.233	823	29	1	6456	7276	70687128	70686306	0.000000e+00	1347.0
6	TraesCS3B01G371700	chr7B	95.773	828	30	4	6453	7276	70692665	70691839	0.000000e+00	1330.0
7	TraesCS3B01G371700	chr7B	95.747	823	32	2	6456	7276	685673581	685672760	0.000000e+00	1323.0
8	TraesCS3B01G371700	chr7B	95.626	823	34	1	6456	7276	44008624	44007802	0.000000e+00	1319.0
9	TraesCS3B01G371700	chr7B	95.284	827	34	4	6453	7276	489819791	489820615	0.000000e+00	1306.0
10	TraesCS3B01G371700	chr4B	95.995	824	31	1	6455	7276	650831501	650832324	0.000000e+00	1338.0
11	TraesCS3B01G371700	chr4B	75.000	352	78	10	5780	6126	377938639	377938293	3.520000e-33	154.0
12	TraesCS3B01G371700	chr5B	95.747	823	32	2	6456	7276	489748223	489747402	0.000000e+00	1323.0
13	TraesCS3B01G371700	chr5B	95.620	822	34	1	6457	7276	4027966	4027145	0.000000e+00	1317.0
14	TraesCS3B01G371700	chr2D	87.940	199	23	1	4030	4227	410499944	410500142	4.390000e-57	233.0
15	TraesCS3B01G371700	chr6D	87.437	199	24	1	4030	4227	160853195	160853393	2.040000e-55	228.0
16	TraesCS3B01G371700	chr4D	74.504	353	78	12	5780	6126	303518841	303518495	7.610000e-30	143.0
17	TraesCS3B01G371700	chr1A	98.246	57	1	0	4030	4086	533365081	533365025	4.640000e-17	100.0
18	TraesCS3B01G371700	chr4A	86.364	88	10	2	5781	5867	668094170	668094084	2.160000e-15	95.3
19	TraesCS3B01G371700	chr4A	82.432	74	8	5	5781	5852	625488056	625488126	7.880000e-05	60.2
20	TraesCS3B01G371700	chr5D	82.432	74	8	5	5781	5852	543609489	543609419	7.880000e-05	60.2
21	TraesCS3B01G371700	chr5A	92.683	41	3	0	5827	5867	67471173	67471133	7.880000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G371700	chr3B	584545469	584552744	7275	False	13437	13437	100.000	1	7276	1	chr3B.!!$F1	7275
1	TraesCS3B01G371700	chr3B	584557650	584558470	820	False	1367	1367	96.711	6456	7276	1	chr3B.!!$F2	820
2	TraesCS3B01G371700	chr3D	445632884	445639355	6471	False	11178	11178	97.885	1	6456	1	chr3D.!!$F1	6455
3	TraesCS3B01G371700	chr3A	587402291	587408783	6492	False	10748	10748	96.648	1	6456	1	chr3A.!!$F1	6455
4	TraesCS3B01G371700	chr7B	70686306	70687128	822	True	1347	1347	96.233	6456	7276	1	chr7B.!!$R2	820
5	TraesCS3B01G371700	chr7B	70691839	70692665	826	True	1330	1330	95.773	6453	7276	1	chr7B.!!$R3	823
6	TraesCS3B01G371700	chr7B	685672760	685673581	821	True	1323	1323	95.747	6456	7276	1	chr7B.!!$R4	820
7	TraesCS3B01G371700	chr7B	44007802	44008624	822	True	1319	1319	95.626	6456	7276	1	chr7B.!!$R1	820
8	TraesCS3B01G371700	chr7B	489819791	489820615	824	False	1306	1306	95.284	6453	7276	1	chr7B.!!$F1	823
9	TraesCS3B01G371700	chr4B	650831501	650832324	823	False	1338	1338	95.995	6455	7276	1	chr4B.!!$F1	821
10	TraesCS3B01G371700	chr5B	489747402	489748223	821	True	1323	1323	95.747	6456	7276	1	chr5B.!!$R2	820
11	TraesCS3B01G371700	chr5B	4027145	4027966	821	True	1317	1317	95.620	6457	7276	1	chr5B.!!$R1	819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
695	696	2.088950	AATAACACCGACGGAACAGG	57.911	50.000	23.38	6.80	0.00	4.00	F
732	733	3.812156	ACTTGGTTGTTTTACTTGCCC	57.188	42.857	0.00	0.00	0.00	5.36	F
1625	1627	4.261322	GGTGACGTCACTGTGAGTACTAAA	60.261	45.833	39.01	2.82	45.73	1.85	F
1728	1730	0.523072	AGGCACATTAAGCAACAGCG	59.477	50.000	0.00	0.00	0.00	5.18	F
3008	3028	1.337118	TGTTGAACCCCTTTGCATCC	58.663	50.000	0.00	0.00	0.00	3.51	F
3937	3958	1.299773	CAGATTCCTCGAGCCGCTC	60.300	63.158	10.59	10.59	0.00	5.03	F
4186	4207	2.031120	TGGTGCAGTTTTCCTTTCTGG	58.969	47.619	0.00	0.00	37.10	3.86	F
5294	5322	2.317530	CAGGAACCTAGTAAGCCTGC	57.682	55.000	0.00	0.00	39.60	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1566	1568	1.135068	TAACCCCGTCCCATGGTGTT	61.135	55.000	11.73	6.62	31.32	3.32	R
1728	1730	2.409948	AGCTCATTGAGTTGGCCTAC	57.590	50.000	14.90	9.54	31.39	3.18	R
2949	2969	2.827322	TGGAAGAAAGACATTGCCCATG	59.173	45.455	0.00	0.00	39.07	3.66	R
3675	3696	3.120321	AGTGTTCCATTCAGTGCGTTA	57.880	42.857	0.00	0.00	0.00	3.18	R
4139	4160	0.251634	GTCCCAGCTCTTTCCAGAGG	59.748	60.000	1.53	0.00	46.24	3.69	R
5135	5163	2.161609	CCTTTCACATGAGGTAAACCGC	59.838	50.000	0.00	0.00	42.08	5.68	R
5957	5987	1.031571	GGTCGATGATGCCCTGCAAA	61.032	55.000	0.00	0.00	43.62	3.68	R
7137	7188	0.802494	GTTGTTCAATCGGCCGTCAT	59.198	50.000	27.15	9.68	0.00	3.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
65	66	6.452244	AAACAAAATTAGAAGACGCATTGC	57.548	33.333	0.00	0.00	0.00	3.56
123	124	8.437360	TGCATAACCAGTCACAAAGATAATAG	57.563	34.615	0.00	0.00	0.00	1.73
129	130	5.882557	CCAGTCACAAAGATAATAGTGCCTT	59.117	40.000	0.00	0.00	32.25	4.35
368	369	5.248640	ACCAATGACTTTGTCACTATCAGG	58.751	41.667	2.31	2.53	45.65	3.86
695	696	2.088950	AATAACACCGACGGAACAGG	57.911	50.000	23.38	6.80	0.00	4.00
732	733	3.812156	ACTTGGTTGTTTTACTTGCCC	57.188	42.857	0.00	0.00	0.00	5.36
1334	1336	9.894783	GTTCATTCAATATCATCTCCTTTCATG	57.105	33.333	0.00	0.00	0.00	3.07
1625	1627	4.261322	GGTGACGTCACTGTGAGTACTAAA	60.261	45.833	39.01	2.82	45.73	1.85
1728	1730	0.523072	AGGCACATTAAGCAACAGCG	59.477	50.000	0.00	0.00	0.00	5.18
1754	1756	4.082026	GGCCAACTCAATGAGCTTGTTTAT	60.082	41.667	10.62	0.00	36.20	1.40
2156	2175	1.466167	GCTCACAACACTGTATGCCTG	59.534	52.381	0.00	0.00	33.22	4.85
2342	2361	5.877012	AGACACATACAAAGCCTTAGTCATG	59.123	40.000	0.00	0.00	0.00	3.07
2424	2444	2.819608	GCAACAATTTCTCTGTAGGGCA	59.180	45.455	0.00	0.00	0.00	5.36
2596	2616	6.002082	ACCAAACATTTGTAAGTCCCTCTAC	58.998	40.000	3.79	0.00	36.45	2.59
2686	2706	7.679659	ACTGAAATTTAAGTCGCTTTGTTTC	57.320	32.000	1.96	7.04	0.00	2.78
2689	2709	6.915843	TGAAATTTAAGTCGCTTTGTTTCTCC	59.084	34.615	0.00	0.00	0.00	3.71
2949	2969	6.322491	GCAACCCTCAAAATCATGTAAGTAC	58.678	40.000	0.00	0.00	0.00	2.73
3008	3028	1.337118	TGTTGAACCCCTTTGCATCC	58.663	50.000	0.00	0.00	0.00	3.51
3485	3505	6.542821	TCTCCCTCAATCACAATTTGTTACT	58.457	36.000	0.00	0.00	0.00	2.24
3605	3626	3.064207	TCTGGCGACATGTAACAGAAAC	58.936	45.455	18.74	0.00	41.51	2.78
3675	3696	7.151308	GCTGATCAGACAGTATACTAAGCAAT	58.849	38.462	27.04	0.00	39.73	3.56
3742	3763	5.398603	ACAACTGAAGATCGTGAATCTCT	57.601	39.130	0.00	0.00	44.26	3.10
3829	3850	2.360165	CCTGCATATTCCAGAACCAAGC	59.640	50.000	0.00	0.00	32.03	4.01
3937	3958	1.299773	CAGATTCCTCGAGCCGCTC	60.300	63.158	10.59	10.59	0.00	5.03
3989	4010	8.702163	TGATATCATACAGCACCAATATAACG	57.298	34.615	0.00	0.00	0.00	3.18
4139	4160	4.036852	ACTTTTCAGCAACTGGAAACTAGC	59.963	41.667	0.00	0.00	34.43	3.42
4186	4207	2.031120	TGGTGCAGTTTTCCTTTCTGG	58.969	47.619	0.00	0.00	37.10	3.86
4257	4278	3.019564	CCATCAACAGGGACATCTTTCC	58.980	50.000	0.00	0.00	34.52	3.13
4792	4814	4.565652	CCACTGTTAGGTGTCCAAGCTTAT	60.566	45.833	0.00	0.00	37.85	1.73
5206	5234	4.099266	ACAGGTGTTGCAATAAAAAGAGCA	59.901	37.500	0.59	0.00	34.79	4.26
5294	5322	2.317530	CAGGAACCTAGTAAGCCTGC	57.682	55.000	0.00	0.00	39.60	4.85
5371	5399	4.794278	TGGTACATTGCGAGAGAACTTA	57.206	40.909	0.00	0.00	0.00	2.24
5683	5713	5.763204	GGGACATGTTTCTACTCAAGTCAAA	59.237	40.000	0.00	0.00	35.07	2.69
5736	5766	7.667043	TTGTCTACCAATTTGTGTACAGATC	57.333	36.000	0.00	0.00	0.00	2.75
5777	5807	4.155826	CCTTGACGGCTACATTTCATTTCA	59.844	41.667	0.00	0.00	0.00	2.69
5957	5987	0.671781	ACGAGCACGACTACTACGGT	60.672	55.000	11.40	0.00	42.66	4.83
6110	6140	2.540515	GAAATCGAGACGATGCTCCAA	58.459	47.619	7.39	0.00	46.30	3.53
6119	6149	1.281867	ACGATGCTCCAAAATGAGGGA	59.718	47.619	0.00	0.00	32.81	4.20
6132	6162	0.041684	TGAGGGACTGAGCTCATCCA	59.958	55.000	30.03	17.09	41.55	3.41
6194	6224	4.489771	GGCCCATACAGCGGTGCT	62.490	66.667	15.82	4.72	40.77	4.40
6268	6298	2.513259	GGTCCCACCGTGGAACTCA	61.513	63.158	19.81	0.00	40.96	3.41
6269	6299	1.448497	GTCCCACCGTGGAACTCAA	59.552	57.895	19.81	0.00	40.96	3.02
6353	6401	3.244009	TGCAATTCGCCCAAATTTGAAGA	60.244	39.130	19.86	11.99	41.33	2.87
6381	6429	1.412710	TCGAATGCCCGATTAGCTTCT	59.587	47.619	0.00	0.00	33.14	2.85
6387	6435	1.406887	GCCCGATTAGCTTCTGACCAA	60.407	52.381	0.00	0.00	0.00	3.67
6404	6453	0.515564	CAAATCAACCACGGTCGACC	59.484	55.000	25.28	25.28	0.00	4.79
6426	6475	2.660236	GTGGATTCGTCTGTGTAACGTC	59.340	50.000	0.00	0.00	42.39	4.34
6512	6561	9.343539	ACTTATTTAAGATGGCCTCAAATAGAC	57.656	33.333	3.32	0.00	37.08	2.59
6756	6807	3.328382	AATCGTTCCAATCCGAGTTCA	57.672	42.857	0.00	0.00	36.41	3.18
6787	6838	3.961408	AGTTAGAGCCATCGGAATACAGT	59.039	43.478	0.00	0.00	0.00	3.55
6789	6840	2.388735	AGAGCCATCGGAATACAGTCA	58.611	47.619	0.00	0.00	0.00	3.41
6857	6908	2.203437	TAGCGCGAGGGATAGCCA	60.203	61.111	12.10	0.00	35.15	4.75
6866	6917	1.207329	GAGGGATAGCCAGTTTCGTGT	59.793	52.381	0.00	0.00	35.15	4.49
6965	7016	2.365293	AGATTGCTTTTGGGCTCGTTTT	59.635	40.909	0.00	0.00	0.00	2.43
7137	7188	4.607239	CCGCCTCTTATATACCTAAGGGA	58.393	47.826	0.00	0.00	31.91	4.20

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
65	66	5.919272	AGATGCTTCAATGTACATGATCG	57.081	39.130	9.63	0.33	0.00	3.69
68	69	7.692460	AAGAAAGATGCTTCAATGTACATGA	57.308	32.000	9.63	6.51	0.00	3.07
70	71	9.399797	TCATAAGAAAGATGCTTCAATGTACAT	57.600	29.630	1.41	1.41	0.00	2.29
123	124	2.566952	GTGCATGGTAATCAAGGCAC	57.433	50.000	0.00	0.00	46.01	5.01
129	130	3.346315	CAGTGAAGGTGCATGGTAATCA	58.654	45.455	0.00	0.00	0.00	2.57
239	240	8.530311	TGTTTTTATCATTTGGCATACATGTCT	58.470	29.630	0.00	0.00	32.56	3.41
695	696	4.399303	ACCAAGTTGCATAAGGATTACTGC	59.601	41.667	0.00	0.00	36.39	4.40
1245	1247	6.602803	TGCACTTGAATGCCATCTCTATTTTA	59.397	34.615	0.00	0.00	45.50	1.52
1334	1336	5.281727	AGAAAATTTGCGAACTTGGAGAAC	58.718	37.500	0.00	0.00	0.00	3.01
1383	1385	2.154854	TACTGTCAGTTGCTCTGCAC	57.845	50.000	11.54	5.41	43.32	4.57
1400	1402	5.507985	GCATGGTGCCATATCTTCCTTTTAC	60.508	44.000	3.07	0.00	37.42	2.01
1436	1438	7.444183	CAGGAATTTACAGACCACTGACTTAAA	59.556	37.037	0.00	0.00	46.03	1.52
1479	1481	2.619165	CGCAGCCACTGACAATGCA	61.619	57.895	0.00	0.00	36.70	3.96
1566	1568	1.135068	TAACCCCGTCCCATGGTGTT	61.135	55.000	11.73	6.62	31.32	3.32
1728	1730	2.409948	AGCTCATTGAGTTGGCCTAC	57.590	50.000	14.90	9.54	31.39	3.18
1754	1756	6.403866	TTTTAAGGGTACGTAACTCACAGA	57.596	37.500	11.05	0.00	0.00	3.41
2041	2060	6.737346	GCACCCTAAAGTATGAGCAAAAACAA	60.737	38.462	0.00	0.00	0.00	2.83
2156	2175	4.660789	AAGGATTTGCTAATGGTCATGC	57.339	40.909	0.00	0.00	0.00	4.06
2342	2361	7.172190	TCAGCAGAGCTTAATAATAATGTGAGC	59.828	37.037	0.00	0.00	36.40	4.26
2424	2444	5.679638	GCCTGTGAAGTTGTTTGAATTCAGT	60.680	40.000	8.41	0.00	32.64	3.41
2596	2616	3.077484	TCAGGCTGAAGGAAGAAATGG	57.923	47.619	16.28	0.00	0.00	3.16
2686	2706	6.127479	GGAGATAAGCATCAGTATGGTAGGAG	60.127	46.154	0.00	0.00	42.93	3.69
2689	2709	6.596309	TGGAGATAAGCATCAGTATGGTAG	57.404	41.667	0.00	0.00	42.93	3.18
2949	2969	2.827322	TGGAAGAAAGACATTGCCCATG	59.173	45.455	0.00	0.00	39.07	3.66
3008	3028	3.157881	TCCTGTCTAATCGGCTATGGAG	58.842	50.000	0.00	0.00	0.00	3.86
3485	3505	5.252547	TGCTCTGCATATTAAGGTGTCAAA	58.747	37.500	0.00	0.00	31.71	2.69
3605	3626	8.808529	AGAAACTTCTATGTTCACGATAATTCG	58.191	33.333	0.00	0.00	42.66	3.34
3675	3696	3.120321	AGTGTTCCATTCAGTGCGTTA	57.880	42.857	0.00	0.00	0.00	3.18
3819	3840	4.156739	GGGAATGTTTAGAGCTTGGTTCTG	59.843	45.833	0.00	0.00	0.00	3.02
3829	3850	6.889198	TGGAATACAGAGGGAATGTTTAGAG	58.111	40.000	0.00	0.00	32.02	2.43
3937	3958	2.043625	TGCTGAAGGCTGCAAAAGG	58.956	52.632	0.50	0.00	44.50	3.11
4139	4160	0.251634	GTCCCAGCTCTTTCCAGAGG	59.748	60.000	1.53	0.00	46.24	3.69
4186	4207	3.058639	GTCATCACTGCTGAAAAGGACAC	60.059	47.826	0.00	0.00	0.00	3.67
4257	4278	5.776173	ATCCTTATCAGTTCTGACGTAGG	57.224	43.478	4.58	11.11	0.00	3.18
4404	4425	9.614792	GGAAGTACCAGTGAATTTCTTATGTAT	57.385	33.333	0.00	0.00	38.79	2.29
4792	4814	7.037438	GTCAGAACCATTAGTATGAACGGTTA	58.963	38.462	0.00	0.00	33.37	2.85
4830	4852	5.536554	CACTGCTGTGAGTATTTGTTAGG	57.463	43.478	18.08	0.00	46.55	2.69
5131	5159	3.093814	TCACATGAGGTAAACCGCTAGA	58.906	45.455	0.00	0.00	42.08	2.43
5132	5160	3.520290	TCACATGAGGTAAACCGCTAG	57.480	47.619	0.00	0.00	42.08	3.42
5133	5161	3.965379	TTCACATGAGGTAAACCGCTA	57.035	42.857	0.00	0.00	42.08	4.26
5134	5162	2.851263	TTCACATGAGGTAAACCGCT	57.149	45.000	0.00	0.00	42.08	5.52
5135	5163	2.161609	CCTTTCACATGAGGTAAACCGC	59.838	50.000	0.00	0.00	42.08	5.68
5206	5234	4.521146	CACCTTGCTTTGATCCATACTCT	58.479	43.478	0.00	0.00	0.00	3.24
5294	5322	5.300286	CCCCTTGTTCATAGCAAAATCCTAG	59.700	44.000	0.00	0.00	0.00	3.02
5371	5399	9.080097	GAACTATCCTCTGTATACATACCTTGT	57.920	37.037	5.91	0.00	42.62	3.16
5424	5452	6.122277	TCAAGTTGTGAAGGAGAAGAAACAT	58.878	36.000	2.11	0.00	31.51	2.71
5665	5695	6.315393	GTGTTCCTTTGACTTGAGTAGAAACA	59.685	38.462	0.00	0.00	0.00	2.83
5683	5713	3.503748	GCAGAGCATTTACAAGTGTTCCT	59.496	43.478	0.00	0.00	0.00	3.36
5736	5766	6.477033	CGTCAAGGATAAGAGTAACCAATGAG	59.523	42.308	0.00	0.00	0.00	2.90
5957	5987	1.031571	GGTCGATGATGCCCTGCAAA	61.032	55.000	0.00	0.00	43.62	3.68
6110	6140	2.172293	GGATGAGCTCAGTCCCTCATTT	59.828	50.000	22.96	0.03	45.93	2.32
6186	6216	2.901840	CACAACCACAGCACCGCT	60.902	61.111	0.00	0.00	40.77	5.52
6194	6224	1.005512	CGATCCGGTCACAACCACA	60.006	57.895	0.00	0.00	46.86	4.17
6229	6259	1.270893	GGGAGGGTTCTTCCGATATGC	60.271	57.143	0.00	0.00	37.00	3.14
6268	6298	2.492484	CACCGAGTAGGAGCTTAGTGTT	59.508	50.000	0.00	0.00	45.00	3.32
6269	6299	2.093106	CACCGAGTAGGAGCTTAGTGT	58.907	52.381	0.00	0.00	45.00	3.55
6311	6357	3.554524	CAAGTTGCAACCACTGATTACG	58.445	45.455	25.62	0.00	0.00	3.18
6312	6358	3.308530	GCAAGTTGCAACCACTGATTAC	58.691	45.455	25.62	3.84	44.26	1.89
6337	6385	1.988293	TGGTCTTCAAATTTGGGCGA	58.012	45.000	17.90	9.14	0.00	5.54
6381	6429	1.600023	GACCGTGGTTGATTTGGTCA	58.400	50.000	4.90	0.00	46.55	4.02
6387	6435	4.687464	GGTCGACCGTGGTTGATT	57.313	55.556	20.85	0.00	40.26	2.57
6404	6453	1.647213	CGTTACACAGACGAATCCACG	59.353	52.381	0.00	0.00	42.82	4.94
6408	6457	4.959631	TTTGACGTTACACAGACGAATC	57.040	40.909	3.48	0.00	42.82	2.52
6732	6781	4.419522	ACTCGGATTGGAACGATTTTTG	57.580	40.909	0.00	0.00	38.56	2.44
6756	6807	4.516698	CCGATGGCTCTAACTTTTGCATAT	59.483	41.667	0.00	0.00	0.00	1.78
6787	6838	2.886523	CAGTTTTTGCCTCCTGACATGA	59.113	45.455	0.00	0.00	0.00	3.07
6789	6840	2.242043	CCAGTTTTTGCCTCCTGACAT	58.758	47.619	0.00	0.00	0.00	3.06
6857	6908	2.542595	GTCAAATCGGTCACACGAAACT	59.457	45.455	0.00	0.00	46.92	2.66
6866	6917	1.974957	TCTTGAGGGTCAAATCGGTCA	59.025	47.619	0.00	0.00	35.73	4.02
6965	7016	2.100252	GGTGGTAAACGATCTCGGATGA	59.900	50.000	4.44	0.00	44.95	2.92
7137	7188	0.802494	GTTGTTCAATCGGCCGTCAT	59.198	50.000	27.15	9.68	0.00	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.