Multiple sequence alignment - TraesCS3B01G371300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G371300 chr3B 100.000 4263 0 0 1 4263 583827894 583823632 0.000000e+00 7873.0
1 TraesCS3B01G371300 chr3A 90.447 1769 73 33 1 1698 586795123 586793380 0.000000e+00 2242.0
2 TraesCS3B01G371300 chr3A 94.163 1302 52 9 2006 3291 586792738 586791445 0.000000e+00 1962.0
3 TraesCS3B01G371300 chr3A 85.495 455 46 15 3815 4263 678733643 678734083 1.400000e-124 457.0
4 TraesCS3B01G371300 chr3D 89.262 1667 61 46 119 1709 445109075 445107451 0.000000e+00 1978.0
5 TraesCS3B01G371300 chr3D 93.119 1366 49 11 1968 3302 445106375 445105024 0.000000e+00 1960.0
6 TraesCS3B01G371300 chr3D 97.727 132 2 1 3 133 445110697 445110566 4.290000e-55 226.0
7 TraesCS3B01G371300 chr3D 83.721 172 10 8 3364 3535 547776270 547776117 3.430000e-31 147.0
8 TraesCS3B01G371300 chr4D 85.324 879 105 19 2352 3212 131042003 131041131 0.000000e+00 887.0
9 TraesCS3B01G371300 chr4D 93.878 147 9 0 3389 3535 423886420 423886566 5.550000e-54 222.0
10 TraesCS3B01G371300 chr1A 88.503 748 55 18 3538 4263 575190537 575191275 0.000000e+00 876.0
11 TraesCS3B01G371300 chr1A 93.284 134 8 1 3405 3538 539687872 539688004 3.360000e-46 196.0
12 TraesCS3B01G371300 chrUn 84.364 889 114 20 2343 3212 59600749 59599867 0.000000e+00 848.0
13 TraesCS3B01G371300 chrUn 82.589 873 133 13 2349 3206 29986589 29987457 0.000000e+00 752.0
14 TraesCS3B01G371300 chrUn 87.570 539 57 7 2679 3212 383555397 383554864 2.180000e-172 616.0
15 TraesCS3B01G371300 chrUn 86.782 522 57 7 2694 3212 362328950 362329462 4.780000e-159 571.0
16 TraesCS3B01G371300 chrUn 76.705 601 102 20 1127 1696 29976033 29976626 2.490000e-77 300.0
17 TraesCS3B01G371300 chr4A 84.216 887 116 19 2344 3212 435442240 435443120 0.000000e+00 841.0
18 TraesCS3B01G371300 chr4A 77.612 603 94 30 1127 1697 435441094 435441687 1.140000e-85 327.0
19 TraesCS3B01G371300 chr7D 85.486 751 78 10 3538 4263 534317018 534316274 0.000000e+00 754.0
20 TraesCS3B01G371300 chr7D 81.343 268 45 5 3538 3804 588428298 588428561 3.340000e-51 213.0
21 TraesCS3B01G371300 chr6B 85.445 742 82 15 3538 4263 540207098 540206367 0.000000e+00 749.0
22 TraesCS3B01G371300 chr6B 85.121 746 78 19 3538 4263 4597748 4597016 0.000000e+00 732.0
23 TraesCS3B01G371300 chr4B 84.438 649 77 12 3633 4263 429351910 429351268 6.060000e-173 617.0
24 TraesCS3B01G371300 chr4B 91.908 173 13 1 3364 3535 71000342 71000514 1.530000e-59 241.0
25 TraesCS3B01G371300 chr5D 78.710 822 132 36 2404 3208 111995169 111995964 3.800000e-140 508.0
26 TraesCS3B01G371300 chr5D 81.977 172 13 5 3364 3535 45218670 45218517 3.460000e-26 130.0
27 TraesCS3B01G371300 chr2B 85.903 454 49 13 3815 4263 129206970 129207413 1.790000e-128 470.0
28 TraesCS3B01G371300 chr1B 83.051 531 63 15 3752 4263 29575293 29574771 1.400000e-124 457.0
29 TraesCS3B01G371300 chr7B 84.430 456 54 14 3815 4263 42164043 42164488 2.350000e-117 433.0
30 TraesCS3B01G371300 chr7B 84.211 456 56 12 3815 4263 531618022 531617576 3.050000e-116 429.0
31 TraesCS3B01G371300 chr7B 90.840 131 11 1 3405 3535 614276107 614276236 1.580000e-39 174.0
32 TraesCS3B01G371300 chr2A 83.991 456 57 9 3815 4263 644388518 644388072 1.420000e-114 424.0
33 TraesCS3B01G371300 chr2A 81.852 270 41 7 3539 3804 149386662 149386927 2.000000e-53 220.0
34 TraesCS3B01G371300 chr5A 91.954 174 14 0 3364 3537 304002997 304002824 1.180000e-60 244.0
35 TraesCS3B01G371300 chr5A 78.873 142 21 5 1127 1265 706471670 706471805 2.110000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G371300 chr3B 583823632 583827894 4262 True 7873 7873 100.000000 1 4263 1 chr3B.!!$R1 4262
1 TraesCS3B01G371300 chr3A 586791445 586795123 3678 True 2102 2242 92.305000 1 3291 2 chr3A.!!$R1 3290
2 TraesCS3B01G371300 chr3D 445105024 445110697 5673 True 1388 1978 93.369333 3 3302 3 chr3D.!!$R2 3299
3 TraesCS3B01G371300 chr4D 131041131 131042003 872 True 887 887 85.324000 2352 3212 1 chr4D.!!$R1 860
4 TraesCS3B01G371300 chr1A 575190537 575191275 738 False 876 876 88.503000 3538 4263 1 chr1A.!!$F2 725
5 TraesCS3B01G371300 chrUn 59599867 59600749 882 True 848 848 84.364000 2343 3212 1 chrUn.!!$R1 869
6 TraesCS3B01G371300 chrUn 29986589 29987457 868 False 752 752 82.589000 2349 3206 1 chrUn.!!$F2 857
7 TraesCS3B01G371300 chrUn 383554864 383555397 533 True 616 616 87.570000 2679 3212 1 chrUn.!!$R2 533
8 TraesCS3B01G371300 chrUn 362328950 362329462 512 False 571 571 86.782000 2694 3212 1 chrUn.!!$F3 518
9 TraesCS3B01G371300 chrUn 29976033 29976626 593 False 300 300 76.705000 1127 1696 1 chrUn.!!$F1 569
10 TraesCS3B01G371300 chr4A 435441094 435443120 2026 False 584 841 80.914000 1127 3212 2 chr4A.!!$F1 2085
11 TraesCS3B01G371300 chr7D 534316274 534317018 744 True 754 754 85.486000 3538 4263 1 chr7D.!!$R1 725
12 TraesCS3B01G371300 chr6B 540206367 540207098 731 True 749 749 85.445000 3538 4263 1 chr6B.!!$R2 725
13 TraesCS3B01G371300 chr6B 4597016 4597748 732 True 732 732 85.121000 3538 4263 1 chr6B.!!$R1 725
14 TraesCS3B01G371300 chr4B 429351268 429351910 642 True 617 617 84.438000 3633 4263 1 chr4B.!!$R1 630
15 TraesCS3B01G371300 chr5D 111995169 111995964 795 False 508 508 78.710000 2404 3208 1 chr5D.!!$F1 804
16 TraesCS3B01G371300 chr1B 29574771 29575293 522 True 457 457 83.051000 3752 4263 1 chr1B.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 2098 0.101219 TGAGTCTCCGTGATGCATCG 59.899 55.0 21.34 11.3 0.00 3.84 F
954 2532 0.183014 TAAACACCGGTGGCCAAGAA 59.817 50.0 36.47 13.0 34.19 2.52 F
975 2553 0.322816 ACGTGGGGAGCGTTCTACTA 60.323 55.0 0.00 0.0 39.79 1.82 F
976 2554 0.381089 CGTGGGGAGCGTTCTACTAG 59.619 60.0 0.00 0.0 0.00 2.57 F
2276 5088 0.451383 CATGGGTCGTCGTACCGTAA 59.549 55.0 7.48 0.0 40.73 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 4342 0.531200 GCACCACCTACGCTAGTCTT 59.469 55.000 0.0 0.0 0.00 3.01 R
1956 4344 1.141234 GGCACCACCTACGCTAGTC 59.859 63.158 0.0 0.0 34.51 2.59 R
2953 5809 1.226745 CGCGTAGAACATGGCCGTA 60.227 57.895 0.0 0.0 0.00 4.02 R
3016 5873 1.003839 GCACATCCTCGGGTTCACA 60.004 57.895 0.0 0.0 0.00 3.58 R
3462 6319 0.103937 CGGCCCAGCAAAAACAGAAA 59.896 50.000 0.0 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 1.479709 ACTAGCTAGGTGCCTCTGTG 58.520 55.000 24.35 0.00 44.23 3.66
151 1659 2.273619 ACAGGAGGATTTGGCTCTTCT 58.726 47.619 0.00 0.00 0.00 2.85
152 1660 3.454858 ACAGGAGGATTTGGCTCTTCTA 58.545 45.455 0.00 0.00 0.00 2.10
159 1667 3.948473 GGATTTGGCTCTTCTAAGGAACC 59.052 47.826 0.00 0.00 0.00 3.62
160 1668 3.434940 TTTGGCTCTTCTAAGGAACCC 57.565 47.619 0.00 0.00 0.00 4.11
170 1678 2.303890 TCTAAGGAACCCTTTTCCGTCC 59.696 50.000 3.34 0.00 41.69 4.79
189 1697 5.399013 CGTCCTCTTCTCTTCTTCTCTTTC 58.601 45.833 0.00 0.00 0.00 2.62
211 1719 9.092876 CTTTCAGAAGACAAATCATACCTAGAC 57.907 37.037 0.00 0.00 34.71 2.59
305 1813 0.248743 TCGTTGCTCTGTTCGAACGT 60.249 50.000 22.48 0.00 41.44 3.99
357 1868 5.128335 AGTGCAGGTTGGTATAGTTAGGTAC 59.872 44.000 0.00 0.00 0.00 3.34
376 1887 2.398588 ACATTGCTAGCTAGGTGCCTA 58.601 47.619 22.10 3.04 44.23 3.93
433 1944 0.670546 ACAAGTCGTCCATGGCGAAG 60.671 55.000 25.77 20.88 40.19 3.79
559 2098 0.101219 TGAGTCTCCGTGATGCATCG 59.899 55.000 21.34 11.30 0.00 3.84
588 2127 6.279882 ACTATCTGCAAAAGCTAGAGTGATC 58.720 40.000 0.00 0.00 30.53 2.92
677 2220 6.073385 CCACGTATCACTACATCAGTACGTAT 60.073 42.308 0.00 0.00 44.26 3.06
792 2359 4.400845 AGCTACGTACGATATAACGCATG 58.599 43.478 24.41 0.00 42.74 4.06
815 2382 3.754850 TCATGCATGTTTCAACCAGAGAG 59.245 43.478 25.43 0.00 0.00 3.20
876 2450 5.942236 GCAATCCATCATCCATACATACACT 59.058 40.000 0.00 0.00 0.00 3.55
913 2487 2.203280 CAATCCGCCCGGCCATTA 60.203 61.111 2.24 0.00 34.68 1.90
925 2499 2.696707 CCGGCCATTACTTCCAGTACTA 59.303 50.000 2.24 0.00 28.93 1.82
931 2505 5.927115 GCCATTACTTCCAGTACTAGCATAC 59.073 44.000 0.00 0.00 28.93 2.39
933 2507 7.371936 CCATTACTTCCAGTACTAGCATACTC 58.628 42.308 0.00 0.00 32.92 2.59
934 2508 6.956202 TTACTTCCAGTACTAGCATACTCC 57.044 41.667 0.00 0.00 32.92 3.85
935 2509 5.132043 ACTTCCAGTACTAGCATACTCCT 57.868 43.478 0.00 0.00 32.92 3.69
938 2512 7.124052 ACTTCCAGTACTAGCATACTCCTAAA 58.876 38.462 0.00 0.00 32.92 1.85
949 2527 1.376812 CTCCTAAACACCGGTGGCC 60.377 63.158 36.47 0.00 34.19 5.36
950 2528 2.119484 CTCCTAAACACCGGTGGCCA 62.119 60.000 36.47 19.89 34.19 5.36
951 2529 1.228306 CCTAAACACCGGTGGCCAA 60.228 57.895 36.47 18.46 34.19 4.52
952 2530 1.241315 CCTAAACACCGGTGGCCAAG 61.241 60.000 36.47 25.40 34.19 3.61
953 2531 0.250553 CTAAACACCGGTGGCCAAGA 60.251 55.000 36.47 15.25 34.19 3.02
954 2532 0.183014 TAAACACCGGTGGCCAAGAA 59.817 50.000 36.47 13.00 34.19 2.52
957 2535 1.966451 CACCGGTGGCCAAGAAGAC 60.966 63.158 27.57 0.00 0.00 3.01
959 2537 2.030562 CGGTGGCCAAGAAGACGT 59.969 61.111 7.24 0.00 0.00 4.34
974 2552 1.593296 GACGTGGGGAGCGTTCTACT 61.593 60.000 0.00 0.00 43.04 2.57
975 2553 0.322816 ACGTGGGGAGCGTTCTACTA 60.323 55.000 0.00 0.00 39.79 1.82
976 2554 0.381089 CGTGGGGAGCGTTCTACTAG 59.619 60.000 0.00 0.00 0.00 2.57
1063 2641 1.689233 TCCCTCATCTTCCACGGGG 60.689 63.158 0.00 0.00 35.58 5.73
1109 2702 4.514577 CGCGTTCCCATCCTCGCT 62.515 66.667 0.00 0.00 45.25 4.93
1139 2732 1.762460 AGTACCCTCCCATGGCGAG 60.762 63.158 18.45 18.45 0.00 5.03
1205 2801 3.062466 CCTCCTCCGCTCGTCACA 61.062 66.667 0.00 0.00 0.00 3.58
1428 3024 1.524621 CATGGAGGACGTGGCCATC 60.525 63.158 9.72 2.39 40.29 3.51
1593 3204 1.112315 CCGGTCTCATGGAGGAGGAG 61.112 65.000 0.00 0.00 35.58 3.69
1681 3307 5.694995 AGTTTCTCCAACATCCTCTTTCAA 58.305 37.500 0.00 0.00 37.93 2.69
1682 3308 6.129179 AGTTTCTCCAACATCCTCTTTCAAA 58.871 36.000 0.00 0.00 37.93 2.69
1699 3746 4.846779 TCAAATTGTTGCAAGGTACTCC 57.153 40.909 0.00 0.00 33.39 3.85
1722 3769 8.882415 TCCCTTCGTTCACTATTATAATGTTC 57.118 34.615 8.28 0.00 0.00 3.18
1725 3772 8.765219 CCTTCGTTCACTATTATAATGTTCCAG 58.235 37.037 8.28 0.00 0.00 3.86
1727 3774 7.497595 TCGTTCACTATTATAATGTTCCAGCT 58.502 34.615 8.28 0.00 0.00 4.24
1761 3809 7.533289 TTGAATCCGATGTATATGGACTGTA 57.467 36.000 0.00 0.00 33.91 2.74
1765 3813 9.517609 GAATCCGATGTATATGGACTGTATTAC 57.482 37.037 0.00 0.00 33.91 1.89
1778 3826 6.481976 TGGACTGTATTACTGTGTTTGTTCAG 59.518 38.462 10.65 0.00 37.65 3.02
1785 3833 9.169468 GTATTACTGTGTTTGTTCAGTCATTTG 57.831 33.333 1.08 0.00 42.77 2.32
1867 3915 6.481954 AAAAAGAGGAAGCACTATTGTACG 57.518 37.500 0.00 0.00 0.00 3.67
1868 3916 3.166489 AGAGGAAGCACTATTGTACGC 57.834 47.619 0.00 0.00 0.00 4.42
1913 4130 9.852091 AAATTGATTACTTGCATTTTCTCTCTC 57.148 29.630 0.00 0.00 0.00 3.20
1915 4132 7.840342 TGATTACTTGCATTTTCTCTCTCTC 57.160 36.000 0.00 0.00 0.00 3.20
1916 4133 7.619050 TGATTACTTGCATTTTCTCTCTCTCT 58.381 34.615 0.00 0.00 0.00 3.10
1917 4134 7.548427 TGATTACTTGCATTTTCTCTCTCTCTG 59.452 37.037 0.00 0.00 0.00 3.35
1918 4135 5.226194 ACTTGCATTTTCTCTCTCTCTGT 57.774 39.130 0.00 0.00 0.00 3.41
1919 4136 4.996122 ACTTGCATTTTCTCTCTCTCTGTG 59.004 41.667 0.00 0.00 0.00 3.66
1920 4137 4.613925 TGCATTTTCTCTCTCTCTGTGT 57.386 40.909 0.00 0.00 0.00 3.72
1921 4138 4.313282 TGCATTTTCTCTCTCTCTGTGTG 58.687 43.478 0.00 0.00 0.00 3.82
1923 4140 4.152045 GCATTTTCTCTCTCTCTGTGTGTG 59.848 45.833 0.00 0.00 0.00 3.82
1926 4143 2.937519 TCTCTCTCTCTGTGTGTGTGT 58.062 47.619 0.00 0.00 0.00 3.72
1927 4144 3.291584 TCTCTCTCTCTGTGTGTGTGTT 58.708 45.455 0.00 0.00 0.00 3.32
1928 4145 3.701542 TCTCTCTCTCTGTGTGTGTGTTT 59.298 43.478 0.00 0.00 0.00 2.83
1929 4146 4.160439 TCTCTCTCTCTGTGTGTGTGTTTT 59.840 41.667 0.00 0.00 0.00 2.43
1930 4147 4.433615 TCTCTCTCTGTGTGTGTGTTTTC 58.566 43.478 0.00 0.00 0.00 2.29
1938 4155 3.749088 TGTGTGTGTGTTTTCGGGATATC 59.251 43.478 0.00 0.00 0.00 1.63
1970 4724 3.314541 AACAAAGACTAGCGTAGGTGG 57.685 47.619 0.00 0.00 43.81 4.61
1979 4733 3.687102 CGTAGGTGGTGCCCGTGA 61.687 66.667 0.00 0.00 38.26 4.35
2028 4782 4.038763 GCTTGGTTTACCCTTTTTGCTAGT 59.961 41.667 0.00 0.00 34.29 2.57
2068 4846 6.619801 AAGCCTGAACTAACAAAGTACTTG 57.380 37.500 9.34 6.22 37.50 3.16
2086 4864 6.780031 AGTACTTGATGGAGCAGTAGTATGAT 59.220 38.462 0.00 0.00 0.00 2.45
2087 4865 7.945109 AGTACTTGATGGAGCAGTAGTATGATA 59.055 37.037 0.00 0.00 0.00 2.15
2088 4866 7.225784 ACTTGATGGAGCAGTAGTATGATAG 57.774 40.000 0.00 0.00 0.00 2.08
2216 5028 1.617740 GCAAAGTAGCATCAAACGGC 58.382 50.000 0.00 0.00 0.00 5.68
2272 5084 0.813184 TTCTCATGGGTCGTCGTACC 59.187 55.000 0.00 5.57 38.94 3.34
2276 5088 0.451383 CATGGGTCGTCGTACCGTAA 59.549 55.000 7.48 0.00 40.73 3.18
2279 5091 1.132262 TGGGTCGTCGTACCGTAATTC 59.868 52.381 7.48 0.00 40.73 2.17
2281 5093 0.833881 GTCGTCGTACCGTAATTCGC 59.166 55.000 0.00 0.00 38.35 4.70
3016 5873 1.948145 CTCGACCCGCTCTACTACATT 59.052 52.381 0.00 0.00 0.00 2.71
3139 5996 0.045469 AGAGGAAGATGGGGGAAGCT 59.955 55.000 0.00 0.00 0.00 3.74
3241 6098 0.990374 ACAAATGCTCTGCTCCTCCT 59.010 50.000 0.00 0.00 0.00 3.69
3243 6100 1.065636 CAAATGCTCTGCTCCTCCTGA 60.066 52.381 0.00 0.00 0.00 3.86
3292 6149 4.365514 TGTTAGGCATTTCTGGTTCTGA 57.634 40.909 0.00 0.00 0.00 3.27
3302 6159 9.651913 GGCATTTCTGGTTCTGATTTATTTTAA 57.348 29.630 0.00 0.00 0.00 1.52
3308 6165 9.241919 TCTGGTTCTGATTTATTTTAAGCATCA 57.758 29.630 0.00 0.00 0.00 3.07
3309 6166 9.512435 CTGGTTCTGATTTATTTTAAGCATCAG 57.488 33.333 0.00 0.00 41.49 2.90
3310 6167 9.023962 TGGTTCTGATTTATTTTAAGCATCAGT 57.976 29.630 7.22 0.00 41.10 3.41
3311 6168 9.860898 GGTTCTGATTTATTTTAAGCATCAGTT 57.139 29.630 7.22 0.00 41.10 3.16
3316 6173 9.844790 TGATTTATTTTAAGCATCAGTTGACTG 57.155 29.630 4.77 4.77 45.08 3.51
3326 6183 2.245159 CAGTTGACTGAGACTTGGCA 57.755 50.000 5.19 0.00 46.59 4.92
3327 6184 2.564771 CAGTTGACTGAGACTTGGCAA 58.435 47.619 5.19 0.00 46.59 4.52
3328 6185 2.945008 CAGTTGACTGAGACTTGGCAAA 59.055 45.455 5.19 0.00 46.59 3.68
3329 6186 3.003068 CAGTTGACTGAGACTTGGCAAAG 59.997 47.826 5.19 0.00 46.59 2.77
3330 6187 5.456621 CAGTTGACTGAGACTTGGCAAAGT 61.457 45.833 6.07 6.07 46.72 2.66
3340 6197 3.754965 ACTTGGCAAAGTCTAAGCATCA 58.245 40.909 0.00 0.00 43.34 3.07
3341 6198 3.755378 ACTTGGCAAAGTCTAAGCATCAG 59.245 43.478 0.00 0.00 43.34 2.90
3342 6199 3.423539 TGGCAAAGTCTAAGCATCAGT 57.576 42.857 0.00 0.00 0.00 3.41
3343 6200 3.338249 TGGCAAAGTCTAAGCATCAGTC 58.662 45.455 0.00 0.00 0.00 3.51
3344 6201 2.349886 GGCAAAGTCTAAGCATCAGTCG 59.650 50.000 0.00 0.00 0.00 4.18
3345 6202 3.254060 GCAAAGTCTAAGCATCAGTCGA 58.746 45.455 0.00 0.00 0.00 4.20
3346 6203 3.061429 GCAAAGTCTAAGCATCAGTCGAC 59.939 47.826 7.70 7.70 0.00 4.20
3347 6204 4.489810 CAAAGTCTAAGCATCAGTCGACT 58.510 43.478 13.58 13.58 33.54 4.18
3348 6205 4.792521 AAGTCTAAGCATCAGTCGACTT 57.207 40.909 17.26 2.43 37.02 3.01
3349 6206 4.792521 AGTCTAAGCATCAGTCGACTTT 57.207 40.909 17.26 10.06 0.00 2.66
3350 6207 5.140747 AGTCTAAGCATCAGTCGACTTTT 57.859 39.130 17.26 2.89 0.00 2.27
3351 6208 5.542779 AGTCTAAGCATCAGTCGACTTTTT 58.457 37.500 17.26 8.46 0.00 1.94
3375 6232 6.707440 TTTTGAAAGTAAAGCATCACTGGA 57.293 33.333 0.00 0.00 0.00 3.86
3376 6233 5.689383 TTGAAAGTAAAGCATCACTGGAC 57.311 39.130 0.00 0.00 0.00 4.02
3377 6234 4.973168 TGAAAGTAAAGCATCACTGGACT 58.027 39.130 0.00 0.00 0.00 3.85
3378 6235 4.756642 TGAAAGTAAAGCATCACTGGACTG 59.243 41.667 0.00 0.00 0.00 3.51
3379 6236 4.623932 AAGTAAAGCATCACTGGACTGA 57.376 40.909 0.00 0.00 0.00 3.41
3380 6237 4.199432 AGTAAAGCATCACTGGACTGAG 57.801 45.455 0.00 0.00 0.00 3.35
3381 6238 3.834813 AGTAAAGCATCACTGGACTGAGA 59.165 43.478 0.00 0.00 0.00 3.27
3382 6239 2.758736 AAGCATCACTGGACTGAGAC 57.241 50.000 0.00 0.00 0.00 3.36
3383 6240 1.935799 AGCATCACTGGACTGAGACT 58.064 50.000 0.00 0.00 0.00 3.24
3384 6241 2.255406 AGCATCACTGGACTGAGACTT 58.745 47.619 0.00 0.00 0.00 3.01
3385 6242 2.028294 AGCATCACTGGACTGAGACTTG 60.028 50.000 0.00 0.00 0.00 3.16
3386 6243 2.934364 GCATCACTGGACTGAGACTTGG 60.934 54.545 0.00 0.00 0.00 3.61
3387 6244 0.681733 TCACTGGACTGAGACTTGGC 59.318 55.000 0.00 0.00 0.00 4.52
3388 6245 0.394192 CACTGGACTGAGACTTGGCA 59.606 55.000 0.00 0.00 0.00 4.92
3389 6246 1.131638 ACTGGACTGAGACTTGGCAA 58.868 50.000 0.00 0.00 0.00 4.52
3390 6247 1.490490 ACTGGACTGAGACTTGGCAAA 59.510 47.619 0.00 0.00 0.00 3.68
3391 6248 2.149578 CTGGACTGAGACTTGGCAAAG 58.850 52.381 0.00 0.00 39.49 2.77
3401 6258 2.154462 ACTTGGCAAAGTCTCATTCGG 58.846 47.619 0.00 0.00 43.34 4.30
3402 6259 1.470098 CTTGGCAAAGTCTCATTCGGG 59.530 52.381 0.00 0.00 0.00 5.14
3403 6260 0.400213 TGGCAAAGTCTCATTCGGGT 59.600 50.000 0.00 0.00 0.00 5.28
3404 6261 0.804989 GGCAAAGTCTCATTCGGGTG 59.195 55.000 0.00 0.00 0.00 4.61
3405 6262 1.610624 GGCAAAGTCTCATTCGGGTGA 60.611 52.381 0.00 0.00 0.00 4.02
3406 6263 1.464997 GCAAAGTCTCATTCGGGTGAC 59.535 52.381 0.00 0.00 0.00 3.67
3407 6264 1.726791 CAAAGTCTCATTCGGGTGACG 59.273 52.381 0.00 0.00 46.11 4.35
3408 6265 0.966920 AAGTCTCATTCGGGTGACGT 59.033 50.000 0.00 0.00 44.69 4.34
3409 6266 0.526662 AGTCTCATTCGGGTGACGTC 59.473 55.000 9.11 9.11 44.69 4.34
3410 6267 0.242825 GTCTCATTCGGGTGACGTCA 59.757 55.000 15.76 15.76 44.69 4.35
3411 6268 1.135083 GTCTCATTCGGGTGACGTCAT 60.135 52.381 23.12 0.52 44.69 3.06
3412 6269 1.134367 TCTCATTCGGGTGACGTCATC 59.866 52.381 23.12 21.92 44.69 2.92
3413 6270 0.174845 TCATTCGGGTGACGTCATCC 59.825 55.000 33.82 33.82 43.70 3.51
3422 6279 5.924475 GGGTGACGTCATCCAATTTATAG 57.076 43.478 37.31 0.00 46.38 1.31
3423 6280 4.213482 GGGTGACGTCATCCAATTTATAGC 59.787 45.833 37.31 13.41 46.38 2.97
3424 6281 4.814234 GGTGACGTCATCCAATTTATAGCA 59.186 41.667 23.12 0.00 0.00 3.49
3425 6282 5.277345 GGTGACGTCATCCAATTTATAGCAC 60.277 44.000 23.12 2.85 0.00 4.40
3426 6283 5.293324 GTGACGTCATCCAATTTATAGCACA 59.707 40.000 23.12 0.00 0.00 4.57
3427 6284 5.523552 TGACGTCATCCAATTTATAGCACAG 59.476 40.000 15.76 0.00 0.00 3.66
3428 6285 4.273480 ACGTCATCCAATTTATAGCACAGC 59.727 41.667 0.00 0.00 0.00 4.40
3429 6286 4.319766 CGTCATCCAATTTATAGCACAGCC 60.320 45.833 0.00 0.00 0.00 4.85
3430 6287 4.022849 GTCATCCAATTTATAGCACAGCCC 60.023 45.833 0.00 0.00 0.00 5.19
3431 6288 3.660970 TCCAATTTATAGCACAGCCCA 57.339 42.857 0.00 0.00 0.00 5.36
3432 6289 4.183223 TCCAATTTATAGCACAGCCCAT 57.817 40.909 0.00 0.00 0.00 4.00
3433 6290 4.144297 TCCAATTTATAGCACAGCCCATC 58.856 43.478 0.00 0.00 0.00 3.51
3434 6291 4.141181 TCCAATTTATAGCACAGCCCATCT 60.141 41.667 0.00 0.00 0.00 2.90
3435 6292 4.586001 CCAATTTATAGCACAGCCCATCTT 59.414 41.667 0.00 0.00 0.00 2.40
3436 6293 5.769662 CCAATTTATAGCACAGCCCATCTTA 59.230 40.000 0.00 0.00 0.00 2.10
3437 6294 6.435277 CCAATTTATAGCACAGCCCATCTTAT 59.565 38.462 0.00 0.00 0.00 1.73
3438 6295 7.039504 CCAATTTATAGCACAGCCCATCTTATT 60.040 37.037 0.00 0.00 0.00 1.40
3439 6296 7.693969 ATTTATAGCACAGCCCATCTTATTC 57.306 36.000 0.00 0.00 0.00 1.75
3440 6297 2.355010 AGCACAGCCCATCTTATTCC 57.645 50.000 0.00 0.00 0.00 3.01
3441 6298 1.133668 AGCACAGCCCATCTTATTCCC 60.134 52.381 0.00 0.00 0.00 3.97
3442 6299 1.133668 GCACAGCCCATCTTATTCCCT 60.134 52.381 0.00 0.00 0.00 4.20
3443 6300 2.856222 CACAGCCCATCTTATTCCCTC 58.144 52.381 0.00 0.00 0.00 4.30
3444 6301 2.173356 CACAGCCCATCTTATTCCCTCA 59.827 50.000 0.00 0.00 0.00 3.86
3445 6302 3.059097 ACAGCCCATCTTATTCCCTCAT 58.941 45.455 0.00 0.00 0.00 2.90
3446 6303 3.073650 ACAGCCCATCTTATTCCCTCATC 59.926 47.826 0.00 0.00 0.00 2.92
3447 6304 2.646798 AGCCCATCTTATTCCCTCATCC 59.353 50.000 0.00 0.00 0.00 3.51
3448 6305 2.376518 GCCCATCTTATTCCCTCATCCA 59.623 50.000 0.00 0.00 0.00 3.41
3449 6306 3.560882 GCCCATCTTATTCCCTCATCCAG 60.561 52.174 0.00 0.00 0.00 3.86
3450 6307 3.654806 CCCATCTTATTCCCTCATCCAGT 59.345 47.826 0.00 0.00 0.00 4.00
3451 6308 4.263243 CCCATCTTATTCCCTCATCCAGTC 60.263 50.000 0.00 0.00 0.00 3.51
3452 6309 4.596643 CCATCTTATTCCCTCATCCAGTCT 59.403 45.833 0.00 0.00 0.00 3.24
3453 6310 5.072872 CCATCTTATTCCCTCATCCAGTCTT 59.927 44.000 0.00 0.00 0.00 3.01
3454 6311 6.270927 CCATCTTATTCCCTCATCCAGTCTTA 59.729 42.308 0.00 0.00 0.00 2.10
3455 6312 7.202130 CCATCTTATTCCCTCATCCAGTCTTAA 60.202 40.741 0.00 0.00 0.00 1.85
3456 6313 7.937700 TCTTATTCCCTCATCCAGTCTTAAT 57.062 36.000 0.00 0.00 0.00 1.40
3457 6314 7.739825 TCTTATTCCCTCATCCAGTCTTAATG 58.260 38.462 0.00 0.00 0.00 1.90
3458 6315 5.983333 ATTCCCTCATCCAGTCTTAATGT 57.017 39.130 0.00 0.00 0.00 2.71
3459 6316 4.760530 TCCCTCATCCAGTCTTAATGTG 57.239 45.455 0.00 0.00 0.00 3.21
3460 6317 4.104086 TCCCTCATCCAGTCTTAATGTGT 58.896 43.478 0.00 0.00 0.00 3.72
3461 6318 4.536090 TCCCTCATCCAGTCTTAATGTGTT 59.464 41.667 0.00 0.00 0.00 3.32
3462 6319 5.014123 TCCCTCATCCAGTCTTAATGTGTTT 59.986 40.000 0.00 0.00 0.00 2.83
3463 6320 5.711976 CCCTCATCCAGTCTTAATGTGTTTT 59.288 40.000 0.00 0.00 0.00 2.43
3464 6321 6.209391 CCCTCATCCAGTCTTAATGTGTTTTT 59.791 38.462 0.00 0.00 0.00 1.94
3465 6322 7.308435 CCTCATCCAGTCTTAATGTGTTTTTC 58.692 38.462 0.00 0.00 0.00 2.29
3466 6323 7.175641 CCTCATCCAGTCTTAATGTGTTTTTCT 59.824 37.037 0.00 0.00 0.00 2.52
3467 6324 7.874940 TCATCCAGTCTTAATGTGTTTTTCTG 58.125 34.615 0.00 0.00 0.00 3.02
3468 6325 7.502226 TCATCCAGTCTTAATGTGTTTTTCTGT 59.498 33.333 0.00 0.00 0.00 3.41
3469 6326 7.639113 TCCAGTCTTAATGTGTTTTTCTGTT 57.361 32.000 0.00 0.00 0.00 3.16
3470 6327 8.062065 TCCAGTCTTAATGTGTTTTTCTGTTT 57.938 30.769 0.00 0.00 0.00 2.83
3471 6328 8.527810 TCCAGTCTTAATGTGTTTTTCTGTTTT 58.472 29.630 0.00 0.00 0.00 2.43
3472 6329 9.150348 CCAGTCTTAATGTGTTTTTCTGTTTTT 57.850 29.630 0.00 0.00 0.00 1.94
3473 6330 9.956797 CAGTCTTAATGTGTTTTTCTGTTTTTG 57.043 29.630 0.00 0.00 0.00 2.44
3474 6331 8.655970 AGTCTTAATGTGTTTTTCTGTTTTTGC 58.344 29.630 0.00 0.00 0.00 3.68
3475 6332 8.655970 GTCTTAATGTGTTTTTCTGTTTTTGCT 58.344 29.630 0.00 0.00 0.00 3.91
3476 6333 8.655092 TCTTAATGTGTTTTTCTGTTTTTGCTG 58.345 29.630 0.00 0.00 0.00 4.41
3477 6334 5.799681 ATGTGTTTTTCTGTTTTTGCTGG 57.200 34.783 0.00 0.00 0.00 4.85
3478 6335 3.999663 TGTGTTTTTCTGTTTTTGCTGGG 59.000 39.130 0.00 0.00 0.00 4.45
3479 6336 3.006247 TGTTTTTCTGTTTTTGCTGGGC 58.994 40.909 0.00 0.00 0.00 5.36
3480 6337 2.323968 TTTTCTGTTTTTGCTGGGCC 57.676 45.000 0.00 0.00 0.00 5.80
3481 6338 0.103937 TTTCTGTTTTTGCTGGGCCG 59.896 50.000 0.00 0.00 0.00 6.13
3482 6339 1.743321 TTCTGTTTTTGCTGGGCCGG 61.743 55.000 8.39 8.39 0.00 6.13
3483 6340 3.864160 CTGTTTTTGCTGGGCCGGC 62.864 63.158 30.63 30.63 36.10 6.13
3484 6341 4.680237 GTTTTTGCTGGGCCGGCC 62.680 66.667 38.57 38.57 34.37 6.13
3494 6351 3.451894 GGCCGGCCCATGTCTTTG 61.452 66.667 36.64 0.00 0.00 2.77
3495 6352 2.676471 GCCGGCCCATGTCTTTGT 60.676 61.111 18.11 0.00 0.00 2.83
3496 6353 2.700773 GCCGGCCCATGTCTTTGTC 61.701 63.158 18.11 0.00 0.00 3.18
3497 6354 1.002134 CCGGCCCATGTCTTTGTCT 60.002 57.895 0.00 0.00 0.00 3.41
3498 6355 0.609131 CCGGCCCATGTCTTTGTCTT 60.609 55.000 0.00 0.00 0.00 3.01
3499 6356 1.247567 CGGCCCATGTCTTTGTCTTT 58.752 50.000 0.00 0.00 0.00 2.52
3500 6357 1.613437 CGGCCCATGTCTTTGTCTTTT 59.387 47.619 0.00 0.00 0.00 2.27
3501 6358 2.817258 CGGCCCATGTCTTTGTCTTTTA 59.183 45.455 0.00 0.00 0.00 1.52
3502 6359 3.443681 CGGCCCATGTCTTTGTCTTTTAT 59.556 43.478 0.00 0.00 0.00 1.40
3503 6360 4.082245 CGGCCCATGTCTTTGTCTTTTATT 60.082 41.667 0.00 0.00 0.00 1.40
3504 6361 5.124776 CGGCCCATGTCTTTGTCTTTTATTA 59.875 40.000 0.00 0.00 0.00 0.98
3505 6362 6.183360 CGGCCCATGTCTTTGTCTTTTATTAT 60.183 38.462 0.00 0.00 0.00 1.28
3506 6363 7.555965 GGCCCATGTCTTTGTCTTTTATTATT 58.444 34.615 0.00 0.00 0.00 1.40
3507 6364 7.492344 GGCCCATGTCTTTGTCTTTTATTATTG 59.508 37.037 0.00 0.00 0.00 1.90
3508 6365 8.034804 GCCCATGTCTTTGTCTTTTATTATTGT 58.965 33.333 0.00 0.00 0.00 2.71
3509 6366 9.927668 CCCATGTCTTTGTCTTTTATTATTGTT 57.072 29.630 0.00 0.00 0.00 2.83
3523 6380 9.465985 TTTTATTATTGTTCGTTCTTTTGGACC 57.534 29.630 0.00 0.00 0.00 4.46
3524 6381 6.642707 ATTATTGTTCGTTCTTTTGGACCA 57.357 33.333 0.00 0.00 0.00 4.02
3525 6382 4.568152 ATTGTTCGTTCTTTTGGACCAG 57.432 40.909 0.00 0.00 0.00 4.00
3526 6383 2.993937 TGTTCGTTCTTTTGGACCAGT 58.006 42.857 0.00 0.00 0.00 4.00
3527 6384 2.680841 TGTTCGTTCTTTTGGACCAGTG 59.319 45.455 0.00 0.00 0.00 3.66
3528 6385 2.681344 GTTCGTTCTTTTGGACCAGTGT 59.319 45.455 0.00 0.00 0.00 3.55
3529 6386 2.993937 TCGTTCTTTTGGACCAGTGTT 58.006 42.857 0.00 0.00 0.00 3.32
3530 6387 2.940410 TCGTTCTTTTGGACCAGTGTTC 59.060 45.455 0.00 0.00 0.00 3.18
3531 6388 2.943033 CGTTCTTTTGGACCAGTGTTCT 59.057 45.455 0.00 0.00 0.00 3.01
3532 6389 3.377172 CGTTCTTTTGGACCAGTGTTCTT 59.623 43.478 0.00 0.00 0.00 2.52
3533 6390 4.142469 CGTTCTTTTGGACCAGTGTTCTTT 60.142 41.667 0.00 0.00 0.00 2.52
3534 6391 5.621329 CGTTCTTTTGGACCAGTGTTCTTTT 60.621 40.000 0.00 0.00 0.00 2.27
3535 6392 5.993748 TCTTTTGGACCAGTGTTCTTTTT 57.006 34.783 0.00 0.00 0.00 1.94
3536 6393 7.317390 GTTCTTTTGGACCAGTGTTCTTTTTA 58.683 34.615 0.00 0.00 0.00 1.52
3537 6394 7.095695 TCTTTTGGACCAGTGTTCTTTTTAG 57.904 36.000 0.00 0.00 0.00 1.85
3538 6395 5.845391 TTTGGACCAGTGTTCTTTTTAGG 57.155 39.130 0.00 0.00 0.00 2.69
3539 6396 3.827722 TGGACCAGTGTTCTTTTTAGGG 58.172 45.455 0.00 0.00 0.00 3.53
3540 6397 3.460340 TGGACCAGTGTTCTTTTTAGGGA 59.540 43.478 0.00 0.00 0.00 4.20
3541 6398 4.072839 GGACCAGTGTTCTTTTTAGGGAG 58.927 47.826 0.00 0.00 0.00 4.30
3542 6399 3.487372 ACCAGTGTTCTTTTTAGGGAGC 58.513 45.455 0.00 0.00 0.00 4.70
3543 6400 3.138468 ACCAGTGTTCTTTTTAGGGAGCT 59.862 43.478 0.00 0.00 0.00 4.09
3544 6401 3.753797 CCAGTGTTCTTTTTAGGGAGCTC 59.246 47.826 4.71 4.71 0.00 4.09
3631 6496 0.863799 CTATCGAGCTGTACCGCGTA 59.136 55.000 4.92 0.00 34.40 4.42
3680 6546 2.108976 GCGCGATCCCAGGAATCA 59.891 61.111 12.10 0.00 0.00 2.57
3684 6550 1.025041 GCGATCCCAGGAATCAAACC 58.975 55.000 0.00 0.00 0.00 3.27
3693 6559 1.644786 GGAATCAAACCGGCGACCAG 61.645 60.000 9.30 0.00 0.00 4.00
3695 6561 0.035439 AATCAAACCGGCGACCAGAT 60.035 50.000 9.30 3.60 0.00 2.90
3731 6604 1.227823 CGTTGCCAGTCCACCTGAA 60.228 57.895 0.00 0.00 44.49 3.02
3734 6607 2.680805 CGTTGCCAGTCCACCTGAATAT 60.681 50.000 0.00 0.00 44.49 1.28
3745 6618 7.065803 CAGTCCACCTGAATATCGTTTTATGTT 59.934 37.037 0.00 0.00 44.49 2.71
3784 6657 0.899720 AATGAACTTAGGACGCCCGA 59.100 50.000 0.00 0.00 37.58 5.14
3791 6664 0.322322 TTAGGACGCCCGAACAACAT 59.678 50.000 0.00 0.00 37.58 2.71
3811 6684 6.594788 ACATGCCAAATCTACTTCAAACAT 57.405 33.333 0.00 0.00 0.00 2.71
3812 6685 6.996509 ACATGCCAAATCTACTTCAAACATT 58.003 32.000 0.00 0.00 0.00 2.71
3813 6686 7.444299 ACATGCCAAATCTACTTCAAACATTT 58.556 30.769 0.00 0.00 0.00 2.32
3817 6707 9.823647 TGCCAAATCTACTTCAAACATTTAAAA 57.176 25.926 0.00 0.00 0.00 1.52
4018 6910 6.401955 ACAAAATTTGGAAACACGAACAAG 57.598 33.333 10.71 0.00 42.67 3.16
4021 6913 6.641176 AAATTTGGAAACACGAACAAGTTC 57.359 33.333 2.89 2.89 42.67 3.01
4057 6949 7.492344 ACATTTGATGAAAGTCCAGAACAAAAC 59.508 33.333 0.00 0.00 31.61 2.43
4122 7016 3.868077 TGGAAACGGAACATTTTGCAAAG 59.132 39.130 12.41 4.39 30.63 2.77
4130 7025 2.742774 ACATTTTGCAAAGCTCCGAAC 58.257 42.857 12.41 0.00 0.00 3.95
4131 7026 2.061028 CATTTTGCAAAGCTCCGAACC 58.939 47.619 12.41 0.00 0.00 3.62
4138 7033 2.481276 GCAAAGCTCCGAACCAAACTTT 60.481 45.455 0.00 0.00 0.00 2.66
4196 7092 4.737855 TTTGGAACGGGAACATTTTTCA 57.262 36.364 0.00 0.00 0.00 2.69
4198 7094 4.314740 TGGAACGGGAACATTTTTCAAG 57.685 40.909 0.00 0.00 0.00 3.02
4199 7095 3.057019 GGAACGGGAACATTTTTCAAGC 58.943 45.455 0.00 0.00 0.00 4.01
4200 7096 3.243737 GGAACGGGAACATTTTTCAAGCT 60.244 43.478 0.00 0.00 0.00 3.74
4203 7101 2.352715 CGGGAACATTTTTCAAGCTCCC 60.353 50.000 0.00 0.00 38.14 4.30
4206 7104 4.444164 GGGAACATTTTTCAAGCTCCCAAA 60.444 41.667 0.00 0.00 40.72 3.28
4207 7105 4.511454 GGAACATTTTTCAAGCTCCCAAAC 59.489 41.667 0.00 0.00 0.00 2.93
4223 7121 8.601546 AGCTCCCAAACAATTTATGGAATTTAA 58.398 29.630 3.09 0.00 35.79 1.52
4245 7143 9.985318 TTTAAGAACATTTTTGCAATTTGTGAG 57.015 25.926 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.724305 TTCTCGTATTTTTCTTGTAGCAACT 57.276 32.000 0.00 0.00 0.00 3.16
104 106 9.696917 ATAGTGTTTGAAAATGAGTTTGGAATC 57.303 29.630 0.00 0.00 0.00 2.52
151 1659 2.303890 GAGGACGGAAAAGGGTTCCTTA 59.696 50.000 0.00 0.00 43.92 2.69
159 1667 3.259625 AGAAGAGAAGAGGACGGAAAAGG 59.740 47.826 0.00 0.00 0.00 3.11
160 1668 4.529109 AGAAGAGAAGAGGACGGAAAAG 57.471 45.455 0.00 0.00 0.00 2.27
189 1697 8.877779 CAAAGTCTAGGTATGATTTGTCTTCTG 58.122 37.037 0.00 0.00 0.00 3.02
226 1734 0.690192 TCTCAGGGATGGAAACGCAA 59.310 50.000 0.00 0.00 0.00 4.85
305 1813 0.248498 CTCACTCTCGCCGCGATTTA 60.248 55.000 17.22 4.23 34.61 1.40
357 1868 2.760374 GTAGGCACCTAGCTAGCAATG 58.240 52.381 18.83 13.25 44.79 2.82
376 1887 7.226720 GGTGATATGATGAGTTTGGAATTACGT 59.773 37.037 0.00 0.00 0.00 3.57
433 1944 3.119096 GGCCGGCGACTTGAAGTC 61.119 66.667 22.54 15.12 41.71 3.01
588 2127 5.405571 AGAAAAAGTAGCACGTACATCAGTG 59.594 40.000 0.00 0.00 41.01 3.66
792 2359 3.503363 TCTCTGGTTGAAACATGCATGAC 59.497 43.478 32.75 18.95 0.00 3.06
815 2382 0.318762 ACAACCAACGAGAGCTCTCC 59.681 55.000 32.86 18.06 39.79 3.71
876 2450 1.194781 GGCTGGTTGGAGAGAGGTCA 61.195 60.000 0.00 0.00 0.00 4.02
913 2487 5.132043 AGGAGTATGCTAGTACTGGAAGT 57.868 43.478 10.90 0.00 44.67 3.01
925 2499 2.093658 CACCGGTGTTTAGGAGTATGCT 60.094 50.000 26.95 0.00 42.36 3.79
931 2505 1.376812 GGCCACCGGTGTTTAGGAG 60.377 63.158 31.80 16.29 0.00 3.69
933 2507 1.228306 TTGGCCACCGGTGTTTAGG 60.228 57.895 31.80 18.25 0.00 2.69
934 2508 0.250553 TCTTGGCCACCGGTGTTTAG 60.251 55.000 31.80 21.62 0.00 1.85
935 2509 0.183014 TTCTTGGCCACCGGTGTTTA 59.817 50.000 31.80 15.12 0.00 2.01
938 2512 2.113139 CTTCTTGGCCACCGGTGT 59.887 61.111 31.80 0.00 0.00 4.16
949 2527 1.738099 CGCTCCCCACGTCTTCTTG 60.738 63.158 0.00 0.00 0.00 3.02
950 2528 1.755393 AACGCTCCCCACGTCTTCTT 61.755 55.000 0.00 0.00 44.30 2.52
951 2529 2.156051 GAACGCTCCCCACGTCTTCT 62.156 60.000 0.00 0.00 44.30 2.85
952 2530 1.737008 GAACGCTCCCCACGTCTTC 60.737 63.158 0.00 0.00 44.30 2.87
953 2531 0.896940 TAGAACGCTCCCCACGTCTT 60.897 55.000 0.00 0.00 44.30 3.01
954 2532 1.303888 TAGAACGCTCCCCACGTCT 60.304 57.895 0.00 0.00 44.30 4.18
957 2535 0.381089 CTAGTAGAACGCTCCCCACG 59.619 60.000 0.00 0.00 0.00 4.94
959 2537 0.323999 TGCTAGTAGAACGCTCCCCA 60.324 55.000 0.00 0.00 0.00 4.96
974 2552 3.060138 CGACGTGCTTAAGTTTGTTGCTA 60.060 43.478 4.02 0.00 0.00 3.49
975 2553 2.286184 CGACGTGCTTAAGTTTGTTGCT 60.286 45.455 4.02 0.00 0.00 3.91
976 2554 2.034076 CGACGTGCTTAAGTTTGTTGC 58.966 47.619 4.02 0.00 0.00 4.17
1030 2608 0.043940 AGGGAGAGCAAGGTGGAGAT 59.956 55.000 0.00 0.00 0.00 2.75
1109 2702 2.048222 GGTACTGTCGCTGCAGCA 60.048 61.111 36.03 21.33 42.21 4.41
1123 2716 2.063979 CACTCGCCATGGGAGGGTA 61.064 63.158 25.17 0.00 45.11 3.69
1205 2801 2.633557 TAGGGGAAGAGGCCGGAGT 61.634 63.158 5.05 0.00 0.00 3.85
1476 3084 1.133388 ACCATCACCCTGGGCATATTG 60.133 52.381 14.08 2.92 40.85 1.90
1593 3204 1.376037 CTTCTCCAACGCCACCTCC 60.376 63.158 0.00 0.00 0.00 4.30
1699 3746 8.657074 TGGAACATTATAATAGTGAACGAAGG 57.343 34.615 0.00 0.00 0.00 3.46
1734 3781 7.773224 ACAGTCCATATACATCGGATTCAAAAA 59.227 33.333 0.00 0.00 0.00 1.94
1735 3782 7.279615 ACAGTCCATATACATCGGATTCAAAA 58.720 34.615 0.00 0.00 0.00 2.44
1736 3783 6.826668 ACAGTCCATATACATCGGATTCAAA 58.173 36.000 0.00 0.00 0.00 2.69
1737 3784 6.419484 ACAGTCCATATACATCGGATTCAA 57.581 37.500 0.00 0.00 0.00 2.69
1738 3785 7.718334 ATACAGTCCATATACATCGGATTCA 57.282 36.000 0.00 0.00 0.00 2.57
1739 3786 9.517609 GTAATACAGTCCATATACATCGGATTC 57.482 37.037 0.00 0.00 0.00 2.52
1743 3790 7.755373 CACAGTAATACAGTCCATATACATCGG 59.245 40.741 0.00 0.00 0.00 4.18
1744 3791 8.297426 ACACAGTAATACAGTCCATATACATCG 58.703 37.037 0.00 0.00 0.00 3.84
1754 3801 6.482308 ACTGAACAAACACAGTAATACAGTCC 59.518 38.462 0.00 0.00 44.06 3.85
1755 3802 7.223971 TGACTGAACAAACACAGTAATACAGTC 59.776 37.037 1.27 1.27 45.54 3.51
1761 3809 7.995289 TCAAATGACTGAACAAACACAGTAAT 58.005 30.769 0.00 0.00 45.54 1.89
1765 3813 5.883661 ACTCAAATGACTGAACAAACACAG 58.116 37.500 0.00 0.00 39.65 3.66
1851 3899 5.986004 AATAAGCGTACAATAGTGCTTCC 57.014 39.130 6.69 0.00 43.77 3.46
1892 4109 7.548780 ACAGAGAGAGAGAAAATGCAAGTAATC 59.451 37.037 0.00 0.00 0.00 1.75
1909 4126 3.243877 CGAAAACACACACACAGAGAGAG 59.756 47.826 0.00 0.00 0.00 3.20
1911 4128 2.285220 CCGAAAACACACACACAGAGAG 59.715 50.000 0.00 0.00 0.00 3.20
1913 4130 1.330521 CCCGAAAACACACACACAGAG 59.669 52.381 0.00 0.00 0.00 3.35
1915 4132 1.374560 TCCCGAAAACACACACACAG 58.625 50.000 0.00 0.00 0.00 3.66
1916 4133 2.045561 ATCCCGAAAACACACACACA 57.954 45.000 0.00 0.00 0.00 3.72
1917 4134 3.126343 GGATATCCCGAAAACACACACAC 59.874 47.826 11.02 0.00 0.00 3.82
1918 4135 3.340034 GGATATCCCGAAAACACACACA 58.660 45.455 11.02 0.00 0.00 3.72
1950 4338 2.631545 ACCACCTACGCTAGTCTTTGTT 59.368 45.455 0.00 0.00 0.00 2.83
1951 4339 2.029290 CACCACCTACGCTAGTCTTTGT 60.029 50.000 0.00 0.00 0.00 2.83
1952 4340 2.607187 CACCACCTACGCTAGTCTTTG 58.393 52.381 0.00 0.00 0.00 2.77
1954 4342 0.531200 GCACCACCTACGCTAGTCTT 59.469 55.000 0.00 0.00 0.00 3.01
1956 4344 1.141234 GGCACCACCTACGCTAGTC 59.859 63.158 0.00 0.00 34.51 2.59
1970 4724 6.072112 ACATATAAATGATTTCACGGGCAC 57.928 37.500 0.00 0.00 36.54 5.01
2003 4757 3.454447 AGCAAAAAGGGTAAACCAAGCTT 59.546 39.130 0.00 0.00 43.89 3.74
2004 4758 3.038280 AGCAAAAAGGGTAAACCAAGCT 58.962 40.909 0.81 0.00 43.89 3.74
2028 4782 7.857734 TCAGGCTTTAATTATCACGATTGAA 57.142 32.000 0.00 0.00 34.61 2.69
2068 4846 6.887545 AGGTACTATCATACTACTGCTCCATC 59.112 42.308 0.00 0.00 36.02 3.51
2086 4864 7.718334 TTCATTGAAGAGATGACAGGTACTA 57.282 36.000 0.00 0.00 34.60 1.82
2087 4865 6.611613 TTCATTGAAGAGATGACAGGTACT 57.388 37.500 0.00 0.00 43.88 2.73
2088 4866 6.650807 TGTTTCATTGAAGAGATGACAGGTAC 59.349 38.462 0.00 0.00 33.51 3.34
2195 5007 1.250476 CGTTTGATGCTACTTTGCGC 58.750 50.000 0.00 0.00 35.36 6.09
2216 5028 5.820423 TGTACGATTTGGACATAATTCCCAG 59.180 40.000 0.00 0.00 34.33 4.45
2272 5084 6.514328 CACAGTACGTATACTAGCGAATTACG 59.486 42.308 0.00 0.00 39.80 3.18
2276 5088 5.998454 ACACAGTACGTATACTAGCGAAT 57.002 39.130 0.00 0.00 39.80 3.34
2279 5091 5.126423 CGTAACACAGTACGTATACTAGCG 58.874 45.833 0.00 0.00 39.80 4.26
2305 5120 4.790718 AGTAAAGGGTCACAAGTTTCCT 57.209 40.909 0.00 0.00 0.00 3.36
2953 5809 1.226745 CGCGTAGAACATGGCCGTA 60.227 57.895 0.00 0.00 0.00 4.02
3016 5873 1.003839 GCACATCCTCGGGTTCACA 60.004 57.895 0.00 0.00 0.00 3.58
3077 5934 3.635869 TAGGCACCTCCCTCCCCAC 62.636 68.421 0.00 0.00 36.41 4.61
3139 5996 2.782222 GGTGCATCCGTAGCCGAGA 61.782 63.158 0.00 0.00 35.63 4.04
3241 6098 4.357325 ACTAATGAGCTCTTCTCCCTTCA 58.643 43.478 16.19 0.00 41.18 3.02
3243 6100 5.013599 ACAAACTAATGAGCTCTTCTCCCTT 59.986 40.000 16.19 0.00 41.18 3.95
3305 6162 8.816414 ACTTTGCCAAGTCTCAGTCAACTGAT 62.816 42.308 12.96 0.00 42.49 2.90
3306 6163 7.602719 ACTTTGCCAAGTCTCAGTCAACTGA 62.603 44.000 12.07 12.07 43.92 3.41
3307 6164 2.245159 TGCCAAGTCTCAGTCAACTG 57.755 50.000 3.69 3.69 45.08 3.16
3308 6165 3.209410 CTTTGCCAAGTCTCAGTCAACT 58.791 45.455 0.00 0.00 0.00 3.16
3309 6166 2.945668 ACTTTGCCAAGTCTCAGTCAAC 59.054 45.455 0.00 0.00 39.15 3.18
3310 6167 3.281727 ACTTTGCCAAGTCTCAGTCAA 57.718 42.857 0.00 0.00 39.15 3.18
3319 6176 3.754965 TGATGCTTAGACTTTGCCAAGT 58.245 40.909 2.23 2.23 46.64 3.16
3320 6177 3.755378 ACTGATGCTTAGACTTTGCCAAG 59.245 43.478 0.00 0.00 35.92 3.61
3321 6178 3.753272 GACTGATGCTTAGACTTTGCCAA 59.247 43.478 0.00 0.00 0.00 4.52
3322 6179 3.338249 GACTGATGCTTAGACTTTGCCA 58.662 45.455 0.00 0.00 0.00 4.92
3323 6180 2.349886 CGACTGATGCTTAGACTTTGCC 59.650 50.000 0.00 0.00 0.00 4.52
3324 6181 3.061429 GTCGACTGATGCTTAGACTTTGC 59.939 47.826 8.70 0.00 0.00 3.68
3325 6182 4.489810 AGTCGACTGATGCTTAGACTTTG 58.510 43.478 19.30 0.00 35.70 2.77
3326 6183 4.792521 AGTCGACTGATGCTTAGACTTT 57.207 40.909 19.30 0.00 35.70 2.66
3327 6184 4.792521 AAGTCGACTGATGCTTAGACTT 57.207 40.909 20.85 3.19 42.09 3.01
3328 6185 4.792521 AAAGTCGACTGATGCTTAGACT 57.207 40.909 20.85 0.00 40.22 3.24
3329 6186 5.847670 AAAAAGTCGACTGATGCTTAGAC 57.152 39.130 20.85 0.00 0.00 2.59
3351 6208 6.978080 GTCCAGTGATGCTTTACTTTCAAAAA 59.022 34.615 0.00 0.00 0.00 1.94
3352 6209 6.321181 AGTCCAGTGATGCTTTACTTTCAAAA 59.679 34.615 0.00 0.00 0.00 2.44
3353 6210 5.827797 AGTCCAGTGATGCTTTACTTTCAAA 59.172 36.000 0.00 0.00 0.00 2.69
3354 6211 5.239306 CAGTCCAGTGATGCTTTACTTTCAA 59.761 40.000 0.00 0.00 0.00 2.69
3355 6212 4.756642 CAGTCCAGTGATGCTTTACTTTCA 59.243 41.667 0.00 0.00 0.00 2.69
3356 6213 4.997395 TCAGTCCAGTGATGCTTTACTTTC 59.003 41.667 0.00 0.00 0.00 2.62
3357 6214 4.973168 TCAGTCCAGTGATGCTTTACTTT 58.027 39.130 0.00 0.00 0.00 2.66
3358 6215 4.284490 TCTCAGTCCAGTGATGCTTTACTT 59.716 41.667 0.00 0.00 0.00 2.24
3359 6216 3.834813 TCTCAGTCCAGTGATGCTTTACT 59.165 43.478 0.00 0.00 0.00 2.24
3360 6217 3.929610 GTCTCAGTCCAGTGATGCTTTAC 59.070 47.826 0.00 0.00 0.00 2.01
3361 6218 3.834813 AGTCTCAGTCCAGTGATGCTTTA 59.165 43.478 0.00 0.00 0.00 1.85
3362 6219 2.636893 AGTCTCAGTCCAGTGATGCTTT 59.363 45.455 0.00 0.00 0.00 3.51
3363 6220 2.255406 AGTCTCAGTCCAGTGATGCTT 58.745 47.619 0.00 0.00 0.00 3.91
3364 6221 1.935799 AGTCTCAGTCCAGTGATGCT 58.064 50.000 0.00 0.00 0.00 3.79
3365 6222 2.344950 CAAGTCTCAGTCCAGTGATGC 58.655 52.381 0.00 0.00 0.00 3.91
3366 6223 2.934364 GCCAAGTCTCAGTCCAGTGATG 60.934 54.545 0.00 0.00 0.00 3.07
3367 6224 1.277557 GCCAAGTCTCAGTCCAGTGAT 59.722 52.381 0.00 0.00 0.00 3.06
3368 6225 0.681733 GCCAAGTCTCAGTCCAGTGA 59.318 55.000 0.00 0.00 0.00 3.41
3369 6226 0.394192 TGCCAAGTCTCAGTCCAGTG 59.606 55.000 0.00 0.00 0.00 3.66
3370 6227 1.131638 TTGCCAAGTCTCAGTCCAGT 58.868 50.000 0.00 0.00 0.00 4.00
3371 6228 2.149578 CTTTGCCAAGTCTCAGTCCAG 58.850 52.381 0.00 0.00 0.00 3.86
3372 6229 1.490490 ACTTTGCCAAGTCTCAGTCCA 59.510 47.619 0.00 0.00 39.15 4.02
3373 6230 2.262423 ACTTTGCCAAGTCTCAGTCC 57.738 50.000 0.00 0.00 39.15 3.85
3381 6238 2.154462 CCGAATGAGACTTTGCCAAGT 58.846 47.619 2.23 2.23 46.64 3.16
3382 6239 1.470098 CCCGAATGAGACTTTGCCAAG 59.530 52.381 0.00 0.00 35.92 3.61
3383 6240 1.202879 ACCCGAATGAGACTTTGCCAA 60.203 47.619 0.00 0.00 0.00 4.52
3384 6241 0.400213 ACCCGAATGAGACTTTGCCA 59.600 50.000 0.00 0.00 0.00 4.92
3385 6242 0.804989 CACCCGAATGAGACTTTGCC 59.195 55.000 0.00 0.00 0.00 4.52
3386 6243 1.464997 GTCACCCGAATGAGACTTTGC 59.535 52.381 0.00 0.00 0.00 3.68
3387 6244 1.726791 CGTCACCCGAATGAGACTTTG 59.273 52.381 0.00 0.00 39.56 2.77
3388 6245 1.343465 ACGTCACCCGAATGAGACTTT 59.657 47.619 0.00 0.00 40.70 2.66
3389 6246 0.966920 ACGTCACCCGAATGAGACTT 59.033 50.000 0.00 0.00 40.70 3.01
3390 6247 0.526662 GACGTCACCCGAATGAGACT 59.473 55.000 11.55 0.00 40.70 3.24
3391 6248 0.242825 TGACGTCACCCGAATGAGAC 59.757 55.000 15.76 0.00 40.70 3.36
3392 6249 1.134367 GATGACGTCACCCGAATGAGA 59.866 52.381 22.71 0.00 40.70 3.27
3393 6250 1.560923 GATGACGTCACCCGAATGAG 58.439 55.000 22.71 0.00 40.70 2.90
3394 6251 0.174845 GGATGACGTCACCCGAATGA 59.825 55.000 22.71 0.00 40.70 2.57
3395 6252 0.108377 TGGATGACGTCACCCGAATG 60.108 55.000 24.05 0.00 40.70 2.67
3396 6253 0.611200 TTGGATGACGTCACCCGAAT 59.389 50.000 24.05 5.55 40.70 3.34
3397 6254 0.611200 ATTGGATGACGTCACCCGAA 59.389 50.000 23.25 17.89 40.70 4.30
3398 6255 0.611200 AATTGGATGACGTCACCCGA 59.389 50.000 21.74 21.74 40.70 5.14
3399 6256 1.448985 AAATTGGATGACGTCACCCG 58.551 50.000 24.05 0.00 44.03 5.28
3400 6257 4.213482 GCTATAAATTGGATGACGTCACCC 59.787 45.833 23.07 23.07 0.00 4.61
3401 6258 4.814234 TGCTATAAATTGGATGACGTCACC 59.186 41.667 22.71 22.63 0.00 4.02
3402 6259 5.293324 TGTGCTATAAATTGGATGACGTCAC 59.707 40.000 22.71 14.46 0.00 3.67
3403 6260 5.423886 TGTGCTATAAATTGGATGACGTCA 58.576 37.500 22.48 22.48 0.00 4.35
3404 6261 5.559035 GCTGTGCTATAAATTGGATGACGTC 60.559 44.000 9.11 9.11 0.00 4.34
3405 6262 4.273480 GCTGTGCTATAAATTGGATGACGT 59.727 41.667 0.00 0.00 0.00 4.34
3406 6263 4.319766 GGCTGTGCTATAAATTGGATGACG 60.320 45.833 0.00 0.00 0.00 4.35
3407 6264 4.022849 GGGCTGTGCTATAAATTGGATGAC 60.023 45.833 0.00 0.00 0.00 3.06
3408 6265 4.144297 GGGCTGTGCTATAAATTGGATGA 58.856 43.478 0.00 0.00 0.00 2.92
3409 6266 3.890756 TGGGCTGTGCTATAAATTGGATG 59.109 43.478 0.00 0.00 0.00 3.51
3410 6267 4.183223 TGGGCTGTGCTATAAATTGGAT 57.817 40.909 0.00 0.00 0.00 3.41
3411 6268 3.660970 TGGGCTGTGCTATAAATTGGA 57.339 42.857 0.00 0.00 0.00 3.53
3412 6269 4.147321 AGATGGGCTGTGCTATAAATTGG 58.853 43.478 0.00 0.00 0.00 3.16
3413 6270 5.779529 AAGATGGGCTGTGCTATAAATTG 57.220 39.130 0.00 0.00 0.00 2.32
3414 6271 7.177392 GGAATAAGATGGGCTGTGCTATAAATT 59.823 37.037 0.00 0.00 0.00 1.82
3415 6272 6.660949 GGAATAAGATGGGCTGTGCTATAAAT 59.339 38.462 0.00 0.00 0.00 1.40
3416 6273 6.003950 GGAATAAGATGGGCTGTGCTATAAA 58.996 40.000 0.00 0.00 0.00 1.40
3417 6274 5.514834 GGGAATAAGATGGGCTGTGCTATAA 60.515 44.000 0.00 0.00 0.00 0.98
3418 6275 4.019321 GGGAATAAGATGGGCTGTGCTATA 60.019 45.833 0.00 0.00 0.00 1.31
3419 6276 3.245052 GGGAATAAGATGGGCTGTGCTAT 60.245 47.826 0.00 0.00 0.00 2.97
3420 6277 2.106511 GGGAATAAGATGGGCTGTGCTA 59.893 50.000 0.00 0.00 0.00 3.49
3421 6278 1.133668 GGGAATAAGATGGGCTGTGCT 60.134 52.381 0.00 0.00 0.00 4.40
3422 6279 1.133668 AGGGAATAAGATGGGCTGTGC 60.134 52.381 0.00 0.00 0.00 4.57
3423 6280 2.173356 TGAGGGAATAAGATGGGCTGTG 59.827 50.000 0.00 0.00 0.00 3.66
3424 6281 2.492025 TGAGGGAATAAGATGGGCTGT 58.508 47.619 0.00 0.00 0.00 4.40
3425 6282 3.560882 GGATGAGGGAATAAGATGGGCTG 60.561 52.174 0.00 0.00 0.00 4.85
3426 6283 2.646798 GGATGAGGGAATAAGATGGGCT 59.353 50.000 0.00 0.00 0.00 5.19
3427 6284 2.376518 TGGATGAGGGAATAAGATGGGC 59.623 50.000 0.00 0.00 0.00 5.36
3428 6285 3.654806 ACTGGATGAGGGAATAAGATGGG 59.345 47.826 0.00 0.00 0.00 4.00
3429 6286 4.596643 AGACTGGATGAGGGAATAAGATGG 59.403 45.833 0.00 0.00 0.00 3.51
3430 6287 5.822132 AGACTGGATGAGGGAATAAGATG 57.178 43.478 0.00 0.00 0.00 2.90
3431 6288 7.937700 TTAAGACTGGATGAGGGAATAAGAT 57.062 36.000 0.00 0.00 0.00 2.40
3432 6289 7.348274 ACATTAAGACTGGATGAGGGAATAAGA 59.652 37.037 5.57 0.00 0.00 2.10
3433 6290 7.443575 CACATTAAGACTGGATGAGGGAATAAG 59.556 40.741 5.57 0.00 0.00 1.73
3434 6291 7.092444 ACACATTAAGACTGGATGAGGGAATAA 60.092 37.037 5.57 0.00 0.00 1.40
3435 6292 6.386927 ACACATTAAGACTGGATGAGGGAATA 59.613 38.462 5.57 0.00 0.00 1.75
3436 6293 5.192522 ACACATTAAGACTGGATGAGGGAAT 59.807 40.000 5.57 0.00 0.00 3.01
3437 6294 4.536090 ACACATTAAGACTGGATGAGGGAA 59.464 41.667 5.57 0.00 0.00 3.97
3438 6295 4.104086 ACACATTAAGACTGGATGAGGGA 58.896 43.478 5.57 0.00 0.00 4.20
3439 6296 4.494091 ACACATTAAGACTGGATGAGGG 57.506 45.455 5.57 0.00 0.00 4.30
3440 6297 6.824305 AAAACACATTAAGACTGGATGAGG 57.176 37.500 5.57 1.39 0.00 3.86
3441 6298 8.019669 CAGAAAAACACATTAAGACTGGATGAG 58.980 37.037 5.57 1.27 0.00 2.90
3442 6299 7.502226 ACAGAAAAACACATTAAGACTGGATGA 59.498 33.333 0.00 0.00 0.00 2.92
3443 6300 7.651808 ACAGAAAAACACATTAAGACTGGATG 58.348 34.615 0.00 0.00 0.00 3.51
3444 6301 7.823745 ACAGAAAAACACATTAAGACTGGAT 57.176 32.000 0.00 0.00 0.00 3.41
3445 6302 7.639113 AACAGAAAAACACATTAAGACTGGA 57.361 32.000 0.00 0.00 0.00 3.86
3446 6303 8.702163 AAAACAGAAAAACACATTAAGACTGG 57.298 30.769 0.00 0.00 0.00 4.00
3447 6304 9.956797 CAAAAACAGAAAAACACATTAAGACTG 57.043 29.630 0.00 0.00 0.00 3.51
3448 6305 8.655970 GCAAAAACAGAAAAACACATTAAGACT 58.344 29.630 0.00 0.00 0.00 3.24
3449 6306 8.655970 AGCAAAAACAGAAAAACACATTAAGAC 58.344 29.630 0.00 0.00 0.00 3.01
3450 6307 8.655092 CAGCAAAAACAGAAAAACACATTAAGA 58.345 29.630 0.00 0.00 0.00 2.10
3451 6308 7.904461 CCAGCAAAAACAGAAAAACACATTAAG 59.096 33.333 0.00 0.00 0.00 1.85
3452 6309 7.148340 CCCAGCAAAAACAGAAAAACACATTAA 60.148 33.333 0.00 0.00 0.00 1.40
3453 6310 6.314896 CCCAGCAAAAACAGAAAAACACATTA 59.685 34.615 0.00 0.00 0.00 1.90
3454 6311 5.123661 CCCAGCAAAAACAGAAAAACACATT 59.876 36.000 0.00 0.00 0.00 2.71
3455 6312 4.635324 CCCAGCAAAAACAGAAAAACACAT 59.365 37.500 0.00 0.00 0.00 3.21
3456 6313 3.999663 CCCAGCAAAAACAGAAAAACACA 59.000 39.130 0.00 0.00 0.00 3.72
3457 6314 3.181511 GCCCAGCAAAAACAGAAAAACAC 60.182 43.478 0.00 0.00 0.00 3.32
3458 6315 3.006247 GCCCAGCAAAAACAGAAAAACA 58.994 40.909 0.00 0.00 0.00 2.83
3459 6316 2.354510 GGCCCAGCAAAAACAGAAAAAC 59.645 45.455 0.00 0.00 0.00 2.43
3460 6317 2.637947 GGCCCAGCAAAAACAGAAAAA 58.362 42.857 0.00 0.00 0.00 1.94
3461 6318 1.472376 CGGCCCAGCAAAAACAGAAAA 60.472 47.619 0.00 0.00 0.00 2.29
3462 6319 0.103937 CGGCCCAGCAAAAACAGAAA 59.896 50.000 0.00 0.00 0.00 2.52
3463 6320 1.739049 CGGCCCAGCAAAAACAGAA 59.261 52.632 0.00 0.00 0.00 3.02
3464 6321 2.199652 CCGGCCCAGCAAAAACAGA 61.200 57.895 0.00 0.00 0.00 3.41
3465 6322 2.339712 CCGGCCCAGCAAAAACAG 59.660 61.111 0.00 0.00 0.00 3.16
3466 6323 3.922640 GCCGGCCCAGCAAAAACA 61.923 61.111 18.11 0.00 0.00 2.83
3467 6324 4.680237 GGCCGGCCCAGCAAAAAC 62.680 66.667 36.64 5.01 0.00 2.43
3477 6334 3.451894 CAAAGACATGGGCCGGCC 61.452 66.667 38.57 38.57 0.00 6.13
3478 6335 2.676471 ACAAAGACATGGGCCGGC 60.676 61.111 21.18 21.18 0.00 6.13
3479 6336 0.609131 AAGACAAAGACATGGGCCGG 60.609 55.000 0.00 0.00 0.00 6.13
3480 6337 1.247567 AAAGACAAAGACATGGGCCG 58.752 50.000 0.00 0.00 0.00 6.13
3481 6338 5.405935 AATAAAAGACAAAGACATGGGCC 57.594 39.130 0.00 0.00 0.00 5.80
3482 6339 8.034804 ACAATAATAAAAGACAAAGACATGGGC 58.965 33.333 0.00 0.00 0.00 5.36
3483 6340 9.927668 AACAATAATAAAAGACAAAGACATGGG 57.072 29.630 0.00 0.00 0.00 4.00
3497 6354 9.465985 GGTCCAAAAGAACGAACAATAATAAAA 57.534 29.630 0.00 0.00 0.00 1.52
3498 6355 8.630917 TGGTCCAAAAGAACGAACAATAATAAA 58.369 29.630 0.00 0.00 33.45 1.40
3499 6356 8.167605 TGGTCCAAAAGAACGAACAATAATAA 57.832 30.769 0.00 0.00 33.45 1.40
3500 6357 7.446013 ACTGGTCCAAAAGAACGAACAATAATA 59.554 33.333 0.00 0.00 33.45 0.98
3501 6358 6.264518 ACTGGTCCAAAAGAACGAACAATAAT 59.735 34.615 0.00 0.00 33.45 1.28
3502 6359 5.591067 ACTGGTCCAAAAGAACGAACAATAA 59.409 36.000 0.00 0.00 33.45 1.40
3503 6360 5.008217 CACTGGTCCAAAAGAACGAACAATA 59.992 40.000 0.00 0.00 33.45 1.90
3504 6361 3.951680 ACTGGTCCAAAAGAACGAACAAT 59.048 39.130 0.00 0.00 33.45 2.71
3505 6362 3.127895 CACTGGTCCAAAAGAACGAACAA 59.872 43.478 0.00 0.00 33.45 2.83
3506 6363 2.680841 CACTGGTCCAAAAGAACGAACA 59.319 45.455 0.00 0.00 33.45 3.18
3507 6364 2.681344 ACACTGGTCCAAAAGAACGAAC 59.319 45.455 0.00 0.00 33.45 3.95
3508 6365 2.993937 ACACTGGTCCAAAAGAACGAA 58.006 42.857 0.00 0.00 33.45 3.85
3509 6366 2.702592 ACACTGGTCCAAAAGAACGA 57.297 45.000 0.00 0.00 33.45 3.85
3510 6367 2.943033 AGAACACTGGTCCAAAAGAACG 59.057 45.455 0.00 0.00 33.45 3.95
3511 6368 4.983671 AAGAACACTGGTCCAAAAGAAC 57.016 40.909 0.00 0.00 0.00 3.01
3512 6369 5.993748 AAAAGAACACTGGTCCAAAAGAA 57.006 34.783 0.00 0.00 0.00 2.52
3513 6370 5.993748 AAAAAGAACACTGGTCCAAAAGA 57.006 34.783 0.00 0.00 0.00 2.52
3514 6371 6.273071 CCTAAAAAGAACACTGGTCCAAAAG 58.727 40.000 0.00 0.00 0.00 2.27
3515 6372 5.128008 CCCTAAAAAGAACACTGGTCCAAAA 59.872 40.000 0.00 0.00 0.00 2.44
3516 6373 4.647399 CCCTAAAAAGAACACTGGTCCAAA 59.353 41.667 0.00 0.00 0.00 3.28
3517 6374 4.079672 TCCCTAAAAAGAACACTGGTCCAA 60.080 41.667 0.00 0.00 0.00 3.53
3518 6375 3.460340 TCCCTAAAAAGAACACTGGTCCA 59.540 43.478 0.00 0.00 0.00 4.02
3519 6376 4.072839 CTCCCTAAAAAGAACACTGGTCC 58.927 47.826 0.00 0.00 0.00 4.46
3520 6377 3.502595 GCTCCCTAAAAAGAACACTGGTC 59.497 47.826 0.00 0.00 0.00 4.02
3521 6378 3.138468 AGCTCCCTAAAAAGAACACTGGT 59.862 43.478 0.00 0.00 0.00 4.00
3522 6379 3.753797 GAGCTCCCTAAAAAGAACACTGG 59.246 47.826 0.87 0.00 0.00 4.00
3523 6380 3.753797 GGAGCTCCCTAAAAAGAACACTG 59.246 47.826 23.19 0.00 0.00 3.66
3524 6381 4.022413 GGAGCTCCCTAAAAAGAACACT 57.978 45.455 23.19 0.00 0.00 3.55
3543 6400 0.895530 CAAAGAGCGTCCAGTAGGGA 59.104 55.000 0.00 0.00 45.89 4.20
3544 6401 0.741221 GCAAAGAGCGTCCAGTAGGG 60.741 60.000 0.00 0.00 34.83 3.53
3606 6471 1.152819 TACAGCTCGATAGGCCGGT 60.153 57.895 1.90 0.00 33.53 5.28
3613 6478 1.262417 CTTACGCGGTACAGCTCGATA 59.738 52.381 16.02 0.94 34.40 2.92
3651 6516 2.041366 GATCGCGCCTGGCTCTTTTC 62.041 60.000 17.92 3.61 40.44 2.29
3680 6546 2.046314 CCATCTGGTCGCCGGTTT 60.046 61.111 1.90 0.00 0.00 3.27
3693 6559 4.147322 CACGCGGTCGCAACCATC 62.147 66.667 12.47 0.00 46.86 3.51
3721 6594 6.920569 ACATAAAACGATATTCAGGTGGAC 57.079 37.500 0.00 0.00 0.00 4.02
3745 6618 8.747666 GTTCATTTAGTTACGCAATGTCAAAAA 58.252 29.630 8.62 0.00 31.08 1.94
3784 6657 6.403866 TTGAAGTAGATTTGGCATGTTGTT 57.596 33.333 0.00 0.00 0.00 2.83
3791 6664 9.823647 TTTTAAATGTTTGAAGTAGATTTGGCA 57.176 25.926 0.00 0.00 0.00 4.92
3817 6707 7.114289 GCGTTTGATAAAACATTCACGTTTTT 58.886 30.769 6.49 0.00 44.61 1.94
3895 6787 5.389411 CGCATCTCGAAAACTCATTTGTGTA 60.389 40.000 0.00 0.00 41.67 2.90
4018 6910 3.332761 TCAAATGTTCACGTGCAGAAC 57.667 42.857 11.67 11.10 44.26 3.01
4021 6913 3.541071 TCATCAAATGTTCACGTGCAG 57.459 42.857 11.67 0.00 0.00 4.41
4096 6990 3.868661 GCAAAATGTTCCGTTTCCAACTT 59.131 39.130 0.00 0.00 0.00 2.66
4097 6991 3.118956 TGCAAAATGTTCCGTTTCCAACT 60.119 39.130 0.00 0.00 0.00 3.16
4098 6992 3.190874 TGCAAAATGTTCCGTTTCCAAC 58.809 40.909 0.00 0.00 0.00 3.77
4117 7011 0.668535 AGTTTGGTTCGGAGCTTTGC 59.331 50.000 0.00 0.00 0.00 3.68
4122 7016 7.309920 TCATATTTAAAAGTTTGGTTCGGAGC 58.690 34.615 0.00 0.00 0.00 4.70
4170 7066 7.769044 TGAAAAATGTTCCCGTTCCAAAATTTA 59.231 29.630 0.00 0.00 0.00 1.40
4196 7092 6.625532 ATTCCATAAATTGTTTGGGAGCTT 57.374 33.333 0.00 0.00 31.81 3.74
4198 7094 8.785329 TTAAATTCCATAAATTGTTTGGGAGC 57.215 30.769 2.70 0.00 37.64 4.70
4223 7121 5.585445 TGCTCACAAATTGCAAAAATGTTCT 59.415 32.000 1.71 0.00 33.48 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.