Multiple sequence alignment - TraesCS3B01G370200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G370200 chr3B 100.000 5467 0 0 1 5467 581981237 581975771 0.000000e+00 10096.0
1 TraesCS3B01G370200 chr3B 86.329 395 33 9 2861 3251 370367085 370366708 1.420000e-110 411.0
2 TraesCS3B01G370200 chr3B 83.041 171 13 7 2852 3021 254143353 254143198 2.050000e-29 141.0
3 TraesCS3B01G370200 chr3B 88.542 96 10 1 755 849 766392264 766392169 1.240000e-21 115.0
4 TraesCS3B01G370200 chr3D 93.775 2040 99 19 822 2856 444077714 444075698 0.000000e+00 3038.0
5 TraesCS3B01G370200 chr3D 90.836 873 52 7 3250 4113 444075692 444074839 0.000000e+00 1144.0
6 TraesCS3B01G370200 chr3D 92.487 772 45 5 4132 4896 444074852 444074087 0.000000e+00 1092.0
7 TraesCS3B01G370200 chr3D 87.340 782 64 12 1 760 444078461 444077693 0.000000e+00 863.0
8 TraesCS3B01G370200 chr3D 88.396 586 24 17 4915 5467 444073067 444072493 0.000000e+00 665.0
9 TraesCS3B01G370200 chr3D 85.616 146 6 3 2863 3007 82744658 82744789 7.380000e-29 139.0
10 TraesCS3B01G370200 chr3D 93.103 87 5 1 759 844 508550053 508550139 5.750000e-25 126.0
11 TraesCS3B01G370200 chr3A 92.509 1949 114 12 822 2757 585040029 585038100 0.000000e+00 2761.0
12 TraesCS3B01G370200 chr3A 94.000 750 35 4 4132 4877 585037449 585036706 0.000000e+00 1127.0
13 TraesCS3B01G370200 chr3A 90.118 678 46 12 3444 4113 585038100 585037436 0.000000e+00 861.0
14 TraesCS3B01G370200 chr3A 87.421 636 58 13 1 620 585318844 585318215 0.000000e+00 712.0
15 TraesCS3B01G370200 chr3A 88.774 579 25 15 4915 5467 585035184 585034620 0.000000e+00 673.0
16 TraesCS3B01G370200 chr7A 92.500 400 25 4 2856 3254 225584229 225583834 7.950000e-158 568.0
17 TraesCS3B01G370200 chr7A 91.094 393 26 8 2860 3251 198895905 198896289 1.740000e-144 523.0
18 TraesCS3B01G370200 chr5A 93.077 390 20 6 2864 3251 8134054 8133670 1.030000e-156 564.0
19 TraesCS3B01G370200 chr5A 90.231 389 29 7 2864 3251 51905571 51905191 2.940000e-137 499.0
20 TraesCS3B01G370200 chr5A 86.957 391 32 9 2865 3251 632278087 632277712 6.550000e-114 422.0
21 TraesCS3B01G370200 chr5A 100.000 35 0 0 2786 2820 652142739 652142705 1.270000e-06 65.8
22 TraesCS3B01G370200 chr5D 91.858 393 27 4 2864 3254 391725406 391725017 1.340000e-150 544.0
23 TraesCS3B01G370200 chr5D 89.247 93 9 1 755 846 86400947 86401039 1.240000e-21 115.0
24 TraesCS3B01G370200 chr5D 97.143 35 1 0 2786 2820 525774443 525774409 5.910000e-05 60.2
25 TraesCS3B01G370200 chr1A 86.923 390 32 9 2865 3251 191546525 191546152 2.350000e-113 420.0
26 TraesCS3B01G370200 chr1D 85.751 393 38 7 2864 3253 286541572 286541949 3.070000e-107 399.0
27 TraesCS3B01G370200 chr1D 88.000 225 14 7 1117 1340 476430276 476430064 2.530000e-63 254.0
28 TraesCS3B01G370200 chr1D 91.954 87 6 1 759 844 318847056 318847142 2.670000e-23 121.0
29 TraesCS3B01G370200 chr7D 82.484 314 34 8 2864 3172 429579122 429578825 7.030000e-64 255.0
30 TraesCS3B01G370200 chr6B 87.946 224 14 4 1117 1339 78645657 78645868 9.090000e-63 252.0
31 TraesCS3B01G370200 chr6B 87.111 225 16 3 1117 1340 119108417 119108205 5.470000e-60 243.0
32 TraesCS3B01G370200 chr7B 87.556 225 15 6 1117 1340 706223626 706223838 1.180000e-61 248.0
33 TraesCS3B01G370200 chr7B 93.548 93 5 1 2863 2954 638508197 638508289 2.660000e-28 137.0
34 TraesCS3B01G370200 chr4A 90.426 94 8 1 759 851 737382250 737382343 7.440000e-24 122.0
35 TraesCS3B01G370200 chr4A 91.111 90 6 2 755 842 491341502 491341413 2.670000e-23 121.0
36 TraesCS3B01G370200 chr2B 92.045 88 6 1 757 843 152471572 152471485 7.440000e-24 122.0
37 TraesCS3B01G370200 chr2B 92.857 42 3 0 2786 2827 734721706 734721665 1.640000e-05 62.1
38 TraesCS3B01G370200 chrUn 88.660 97 8 2 755 850 42362453 42362359 1.240000e-21 115.0
39 TraesCS3B01G370200 chr1B 89.247 93 9 1 752 843 560255458 560255366 1.240000e-21 115.0
40 TraesCS3B01G370200 chr6D 86.585 82 9 2 2785 2865 102470379 102470299 7.540000e-14 89.8
41 TraesCS3B01G370200 chr5B 97.143 35 1 0 2786 2820 660361280 660361246 5.910000e-05 60.2
42 TraesCS3B01G370200 chr2A 89.362 47 5 0 2785 2831 735966706 735966660 5.910000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G370200 chr3B 581975771 581981237 5466 True 10096.0 10096 100.00000 1 5467 1 chr3B.!!$R3 5466
1 TraesCS3B01G370200 chr3D 444072493 444078461 5968 True 1360.4 3038 90.56680 1 5467 5 chr3D.!!$R1 5466
2 TraesCS3B01G370200 chr3A 585034620 585040029 5409 True 1355.5 2761 91.35025 822 5467 4 chr3A.!!$R2 4645
3 TraesCS3B01G370200 chr3A 585318215 585318844 629 True 712.0 712 87.42100 1 620 1 chr3A.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 372 0.169009 GAATCCTTCGCTGTGGTTGC 59.831 55.0 0.00 0.0 0.00 4.17 F
773 796 0.324091 GGAGTACTCCCTCCGTTCCA 60.324 60.0 28.87 0.0 43.94 3.53 F
1298 1334 0.181350 GTATGGGAGGCCACTGAAGG 59.819 60.0 5.01 0.0 0.00 3.46 F
2601 2645 0.040204 CATTTCCTGGAGGCCAAGGT 59.960 55.0 16.33 0.0 30.80 3.50 F
3105 3149 0.033796 CCTTGGATGAGGTGGCATGT 60.034 55.0 0.00 0.0 31.89 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1187 1222 0.460109 CACCGCTTCGACATCATCCA 60.460 55.0 0.0 0.0 0.00 3.41 R
2504 2548 0.320771 GAGCATCCACCAACGACAGT 60.321 55.0 0.0 0.0 0.00 3.55 R
3086 3130 0.033796 ACATGCCACCTCATCCAAGG 60.034 55.0 0.0 0.0 42.55 3.61 R
4297 4357 0.035056 ACCAGTAGCCATGCCAGAAC 60.035 55.0 0.0 0.0 0.00 3.01 R
4923 6463 0.378257 CCCACGAATGAGCGATTTGG 59.622 55.0 0.0 0.0 34.83 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.209986 ACTTCATGCCTTCATCAGATTTTCAA 59.790 34.615 0.00 0.00 0.00 2.69
50 51 7.402054 TCAGATTTTCAAGCCAGGAAATACTA 58.598 34.615 0.00 0.00 34.50 1.82
55 56 3.199946 TCAAGCCAGGAAATACTAGTGGG 59.800 47.826 5.39 0.00 0.00 4.61
111 112 1.204941 GAAGCCTAAAGAGCCGTCTCA 59.795 52.381 0.00 0.00 41.81 3.27
123 124 3.637273 GTCTCAGGCCAACCCGGT 61.637 66.667 5.01 0.00 39.21 5.28
146 147 0.250640 CACTGAAGCACAAGAGGGCT 60.251 55.000 0.00 0.00 43.46 5.19
161 162 2.170607 GAGGGCTAACCAGATGCTAACA 59.829 50.000 0.00 0.00 43.89 2.41
182 183 1.006688 GCAAATCAAAACGCCGGGT 60.007 52.632 2.18 0.00 0.00 5.28
223 231 6.868339 CCCTTGAAGCTTAAACTTATGTTTGG 59.132 38.462 15.08 9.65 45.01 3.28
226 234 9.185192 CTTGAAGCTTAAACTTATGTTTGGAAG 57.815 33.333 15.08 12.43 45.01 3.46
229 237 9.744468 GAAGCTTAAACTTATGTTTGGAAGAAA 57.256 29.630 15.08 2.07 45.01 2.52
296 313 2.491621 CGAGAGCCATCGAGCACA 59.508 61.111 2.10 0.00 45.56 4.57
344 361 7.818930 TGTTAATTTGGCTTGAATGAATCCTTC 59.181 33.333 0.00 0.00 0.00 3.46
355 372 0.169009 GAATCCTTCGCTGTGGTTGC 59.831 55.000 0.00 0.00 0.00 4.17
357 374 1.237285 ATCCTTCGCTGTGGTTGCAC 61.237 55.000 0.00 0.00 0.00 4.57
374 397 5.462405 GTTGCACCCGTCAATTTATTGTTA 58.538 37.500 2.66 0.00 38.84 2.41
423 446 9.643693 CTTGCATCTTGATAAACCTTAAACAAT 57.356 29.630 0.00 0.00 0.00 2.71
431 454 4.972751 AAACCTTAAACAATGTGGGCAT 57.027 36.364 0.00 0.00 36.80 4.40
520 543 2.241941 TCTTATGCCACATGTCCACCAT 59.758 45.455 0.00 0.00 0.00 3.55
570 593 5.048364 TGAAATTGACCGATCCGATGTTTTT 60.048 36.000 0.00 0.00 0.00 1.94
597 620 2.783832 GACTGCTCGCAAAGAACAAAAC 59.216 45.455 0.00 0.00 0.00 2.43
598 621 2.163412 ACTGCTCGCAAAGAACAAAACA 59.837 40.909 0.00 0.00 0.00 2.83
637 660 6.127810 CATCAAAATGATATAGATGCGGGG 57.872 41.667 0.00 0.00 34.28 5.73
638 661 5.241403 TCAAAATGATATAGATGCGGGGT 57.759 39.130 0.00 0.00 0.00 4.95
639 662 6.367374 TCAAAATGATATAGATGCGGGGTA 57.633 37.500 0.00 0.00 0.00 3.69
640 663 6.774673 TCAAAATGATATAGATGCGGGGTAA 58.225 36.000 0.00 0.00 0.00 2.85
641 664 6.653320 TCAAAATGATATAGATGCGGGGTAAC 59.347 38.462 0.00 0.00 0.00 2.50
718 741 8.879759 TCGGAAATAACTGACATGTTTCTATTC 58.120 33.333 0.00 0.00 31.12 1.75
732 755 8.504005 CATGTTTCTATTCTGAACTAAAACCGT 58.496 33.333 15.10 6.67 0.00 4.83
733 756 8.080083 TGTTTCTATTCTGAACTAAAACCGTC 57.920 34.615 15.10 0.00 0.00 4.79
736 759 3.842007 TTCTGAACTAAAACCGTCCCA 57.158 42.857 0.00 0.00 0.00 4.37
737 760 3.116079 TCTGAACTAAAACCGTCCCAC 57.884 47.619 0.00 0.00 0.00 4.61
738 761 2.701951 TCTGAACTAAAACCGTCCCACT 59.298 45.455 0.00 0.00 0.00 4.00
739 762 3.135167 TCTGAACTAAAACCGTCCCACTT 59.865 43.478 0.00 0.00 0.00 3.16
740 763 4.344679 TCTGAACTAAAACCGTCCCACTTA 59.655 41.667 0.00 0.00 0.00 2.24
741 764 5.012354 TCTGAACTAAAACCGTCCCACTTAT 59.988 40.000 0.00 0.00 0.00 1.73
742 765 5.623169 TGAACTAAAACCGTCCCACTTATT 58.377 37.500 0.00 0.00 0.00 1.40
743 766 6.063404 TGAACTAAAACCGTCCCACTTATTT 58.937 36.000 0.00 0.00 0.00 1.40
744 767 6.205270 TGAACTAAAACCGTCCCACTTATTTC 59.795 38.462 0.00 0.00 0.00 2.17
745 768 5.005740 ACTAAAACCGTCCCACTTATTTCC 58.994 41.667 0.00 0.00 0.00 3.13
746 769 2.103537 AACCGTCCCACTTATTTCCG 57.896 50.000 0.00 0.00 0.00 4.30
747 770 1.269012 ACCGTCCCACTTATTTCCGA 58.731 50.000 0.00 0.00 0.00 4.55
748 771 1.624813 ACCGTCCCACTTATTTCCGAA 59.375 47.619 0.00 0.00 0.00 4.30
749 772 2.038820 ACCGTCCCACTTATTTCCGAAA 59.961 45.455 0.00 0.00 0.00 3.46
750 773 2.676342 CCGTCCCACTTATTTCCGAAAG 59.324 50.000 0.00 0.00 0.00 2.62
751 774 3.592059 CGTCCCACTTATTTCCGAAAGA 58.408 45.455 0.00 0.00 0.00 2.52
752 775 3.998341 CGTCCCACTTATTTCCGAAAGAA 59.002 43.478 1.22 1.22 0.00 2.52
753 776 4.092968 CGTCCCACTTATTTCCGAAAGAAG 59.907 45.833 21.34 21.34 35.40 2.85
754 777 4.395231 GTCCCACTTATTTCCGAAAGAAGG 59.605 45.833 24.83 16.30 35.40 3.46
755 778 3.694566 CCCACTTATTTCCGAAAGAAGGG 59.305 47.826 24.83 22.24 35.40 3.95
756 779 4.566907 CCCACTTATTTCCGAAAGAAGGGA 60.567 45.833 25.37 0.00 35.40 4.20
757 780 4.636206 CCACTTATTTCCGAAAGAAGGGAG 59.364 45.833 25.37 16.47 35.40 4.30
758 781 5.246307 CACTTATTTCCGAAAGAAGGGAGT 58.754 41.667 24.83 8.42 35.40 3.85
759 782 6.403878 CACTTATTTCCGAAAGAAGGGAGTA 58.596 40.000 24.83 0.00 35.40 2.59
760 783 6.313164 CACTTATTTCCGAAAGAAGGGAGTAC 59.687 42.308 24.83 0.00 35.40 2.73
761 784 6.212993 ACTTATTTCCGAAAGAAGGGAGTACT 59.787 38.462 24.83 0.00 35.40 2.73
762 785 4.532314 TTTCCGAAAGAAGGGAGTACTC 57.468 45.455 14.87 14.87 35.40 2.59
772 795 2.502633 GGAGTACTCCCTCCGTTCC 58.497 63.158 28.87 3.41 43.94 3.62
773 796 0.324091 GGAGTACTCCCTCCGTTCCA 60.324 60.000 28.87 0.00 43.94 3.53
774 797 1.553706 GAGTACTCCCTCCGTTCCAA 58.446 55.000 12.13 0.00 0.00 3.53
775 798 1.897802 GAGTACTCCCTCCGTTCCAAA 59.102 52.381 12.13 0.00 0.00 3.28
776 799 2.301009 GAGTACTCCCTCCGTTCCAAAA 59.699 50.000 12.13 0.00 0.00 2.44
777 800 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
778 801 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
779 802 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
780 803 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
781 804 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
782 805 4.966805 ACTCCCTCCGTTCCAAAATAGATA 59.033 41.667 0.00 0.00 0.00 1.98
783 806 5.427481 ACTCCCTCCGTTCCAAAATAGATAA 59.573 40.000 0.00 0.00 0.00 1.75
784 807 5.677567 TCCCTCCGTTCCAAAATAGATAAC 58.322 41.667 0.00 0.00 0.00 1.89
785 808 5.427481 TCCCTCCGTTCCAAAATAGATAACT 59.573 40.000 0.00 0.00 0.00 2.24
786 809 5.758784 CCCTCCGTTCCAAAATAGATAACTC 59.241 44.000 0.00 0.00 0.00 3.01
787 810 6.346096 CCTCCGTTCCAAAATAGATAACTCA 58.654 40.000 0.00 0.00 0.00 3.41
788 811 6.821665 CCTCCGTTCCAAAATAGATAACTCAA 59.178 38.462 0.00 0.00 0.00 3.02
789 812 7.499232 CCTCCGTTCCAAAATAGATAACTCAAT 59.501 37.037 0.00 0.00 0.00 2.57
790 813 8.801882 TCCGTTCCAAAATAGATAACTCAATT 57.198 30.769 0.00 0.00 0.00 2.32
791 814 9.238368 TCCGTTCCAAAATAGATAACTCAATTT 57.762 29.630 0.00 0.00 0.00 1.82
792 815 9.855021 CCGTTCCAAAATAGATAACTCAATTTT 57.145 29.630 0.00 0.00 33.07 1.82
834 857 9.471084 AAAGTTGAGTTATTTATTTTGGAACGG 57.529 29.630 0.00 0.00 0.00 4.44
879 913 0.530650 ATATCGACCGGCAGTGCAAG 60.531 55.000 18.61 9.83 0.00 4.01
883 917 4.189580 ACCGGCAGTGCAAGTGGT 62.190 61.111 18.61 15.30 37.87 4.16
884 918 2.906897 CCGGCAGTGCAAGTGGTT 60.907 61.111 18.61 0.00 37.87 3.67
885 919 2.332514 CGGCAGTGCAAGTGGTTG 59.667 61.111 18.61 0.00 37.87 3.77
886 920 2.186160 CGGCAGTGCAAGTGGTTGA 61.186 57.895 18.61 0.00 37.87 3.18
887 921 1.723608 CGGCAGTGCAAGTGGTTGAA 61.724 55.000 18.61 0.00 37.87 2.69
888 922 0.459489 GGCAGTGCAAGTGGTTGAAA 59.541 50.000 18.61 0.00 37.87 2.69
889 923 1.069049 GGCAGTGCAAGTGGTTGAAAT 59.931 47.619 18.61 0.00 37.87 2.17
890 924 2.129607 GCAGTGCAAGTGGTTGAAATG 58.870 47.619 11.09 0.00 39.86 2.32
891 925 2.746269 CAGTGCAAGTGGTTGAAATGG 58.254 47.619 0.00 0.00 34.19 3.16
892 926 2.361757 CAGTGCAAGTGGTTGAAATGGA 59.638 45.455 0.00 0.00 34.19 3.41
1123 1158 2.203877 TAACAGCCCACCGACCCT 60.204 61.111 0.00 0.00 0.00 4.34
1298 1334 0.181350 GTATGGGAGGCCACTGAAGG 59.819 60.000 5.01 0.00 0.00 3.46
1348 1384 1.978455 ATCGGGGGTTCGCTGCATTA 61.978 55.000 0.00 0.00 0.00 1.90
1642 1685 7.434307 CGTCAAAGACAGGTATACATCGTTATT 59.566 37.037 5.01 0.00 32.09 1.40
1684 1727 1.830587 TTGTGCCGCCTCTCACTCAT 61.831 55.000 0.00 0.00 34.49 2.90
1703 1746 5.163622 ACTCATTATGTTTTCCAGGATTGCG 60.164 40.000 0.00 0.00 0.00 4.85
1730 1773 4.815308 AGCATGATTAGTGATGCAGAAGAC 59.185 41.667 11.92 0.00 45.90 3.01
1766 1809 5.200483 TCTCCAAACAAGGTTTGATTGTCT 58.800 37.500 20.13 0.00 40.53 3.41
1957 2001 6.862711 TCGATAGATGTTGAGAGACGTATT 57.137 37.500 0.00 0.00 42.67 1.89
1984 2028 1.136141 CGCGCATTTGGAGCAGATATC 60.136 52.381 8.75 0.00 43.17 1.63
2008 2052 4.935808 GTGTTAACTGATCCTACAACAGGG 59.064 45.833 7.22 0.00 45.58 4.45
2032 2076 1.322442 AAGGAGCTGTTGACAAAGCC 58.678 50.000 14.69 9.03 40.42 4.35
2092 2136 3.916761 TCAGCAATTCAACAATTCAGCC 58.083 40.909 0.00 0.00 28.97 4.85
2114 2158 3.914426 ACAGTGAGGTTGAGACTTTGT 57.086 42.857 0.00 0.00 0.00 2.83
2135 2179 9.669353 CTTTGTGCCATTATCATTTACTCATAC 57.331 33.333 0.00 0.00 0.00 2.39
2136 2180 8.744568 TTGTGCCATTATCATTTACTCATACA 57.255 30.769 0.00 0.00 0.00 2.29
2137 2181 8.382030 TGTGCCATTATCATTTACTCATACAG 57.618 34.615 0.00 0.00 0.00 2.74
2138 2182 7.992608 TGTGCCATTATCATTTACTCATACAGT 59.007 33.333 0.00 0.00 39.41 3.55
2139 2183 8.499162 GTGCCATTATCATTTACTCATACAGTC 58.501 37.037 0.00 0.00 36.43 3.51
2140 2184 8.210265 TGCCATTATCATTTACTCATACAGTCA 58.790 33.333 0.00 0.00 36.43 3.41
2141 2185 9.224267 GCCATTATCATTTACTCATACAGTCAT 57.776 33.333 0.00 0.00 36.43 3.06
2156 2200 4.864633 ACAGTCATATGCTATCTGTGACG 58.135 43.478 15.98 0.00 42.87 4.35
2157 2201 4.339530 ACAGTCATATGCTATCTGTGACGT 59.660 41.667 15.98 0.00 42.87 4.34
2210 2254 8.370493 TCTTTAAATGATCTATTGAGAAGCCG 57.630 34.615 0.00 0.00 34.61 5.52
2289 2333 5.541101 ACACTGGGTACTGTTGACATACTTA 59.459 40.000 0.00 0.00 0.00 2.24
2309 2353 2.123248 TTGCGAGCATTGGGACTGGA 62.123 55.000 0.00 0.00 0.00 3.86
2312 2356 1.903877 CGAGCATTGGGACTGGAGGT 61.904 60.000 0.00 0.00 0.00 3.85
2351 2395 5.034797 GGGCGCTACTTAAAAATGATGAAC 58.965 41.667 7.64 0.00 0.00 3.18
2391 2435 7.487822 TCCAATCTTACTCTCTCATCAAGTT 57.512 36.000 0.00 0.00 0.00 2.66
2399 2443 5.303971 ACTCTCTCATCAAGTTGTTTCAGG 58.696 41.667 2.11 0.00 0.00 3.86
2405 2449 7.930217 TCTCATCAAGTTGTTTCAGGTTTTAG 58.070 34.615 2.11 0.00 0.00 1.85
2408 2452 6.693315 TCAAGTTGTTTCAGGTTTTAGGAG 57.307 37.500 2.11 0.00 0.00 3.69
2411 2455 6.694877 AGTTGTTTCAGGTTTTAGGAGAAC 57.305 37.500 0.00 0.00 0.00 3.01
2428 2472 9.905713 TTAGGAGAACTGCATTAAAATGACTAT 57.094 29.630 6.87 0.00 38.70 2.12
2429 2473 8.218338 AGGAGAACTGCATTAAAATGACTATG 57.782 34.615 6.87 0.00 38.70 2.23
2435 2479 9.840427 AACTGCATTAAAATGACTATGTGTTAC 57.160 29.630 6.87 0.00 38.70 2.50
2462 2506 5.186797 TGTCAACAACTTCACCCATTTTCTT 59.813 36.000 0.00 0.00 0.00 2.52
2467 2511 6.981722 ACAACTTCACCCATTTTCTTCATAC 58.018 36.000 0.00 0.00 0.00 2.39
2497 2541 8.363390 TCCAATGTTGTTGCATTACATCTTAAA 58.637 29.630 8.68 0.00 37.00 1.52
2500 2544 9.926158 AATGTTGTTGCATTACATCTTAAATCA 57.074 25.926 8.68 0.00 37.32 2.57
2525 2569 0.396435 TGTCGTTGGTGGATGCTCTT 59.604 50.000 0.00 0.00 0.00 2.85
2532 2576 3.500448 TGGTGGATGCTCTTGTTTACA 57.500 42.857 0.00 0.00 0.00 2.41
2538 2582 4.009675 GGATGCTCTTGTTTACACCATGA 58.990 43.478 0.00 0.00 0.00 3.07
2601 2645 0.040204 CATTTCCTGGAGGCCAAGGT 59.960 55.000 16.33 0.00 30.80 3.50
2607 2651 2.352805 GGAGGCCAAGGTCCAGTG 59.647 66.667 5.01 0.00 32.55 3.66
2620 2664 7.627726 GCCAAGGTCCAGTGTAAATATACAAAC 60.628 40.741 0.00 0.00 43.41 2.93
2650 2694 5.186992 GCAGAAATATACACAAACCCCCTTT 59.813 40.000 0.00 0.00 0.00 3.11
2654 2698 9.862149 AGAAATATACACAAACCCCCTTTATAG 57.138 33.333 0.00 0.00 0.00 1.31
2659 2703 5.833340 ACACAAACCCCCTTTATAGCAATA 58.167 37.500 0.00 0.00 0.00 1.90
2716 2760 5.888691 TGTCTACACTTGAGATCTGAGTC 57.111 43.478 0.00 0.00 0.00 3.36
2766 2810 2.046314 CCATCCCACCCACACGAC 60.046 66.667 0.00 0.00 0.00 4.34
2778 2822 3.449227 CACGACGCCTAGCCTCCA 61.449 66.667 0.00 0.00 0.00 3.86
2779 2823 3.450115 ACGACGCCTAGCCTCCAC 61.450 66.667 0.00 0.00 0.00 4.02
2782 2826 2.603473 ACGCCTAGCCTCCACACA 60.603 61.111 0.00 0.00 0.00 3.72
2786 2830 0.461961 GCCTAGCCTCCACACAGTAG 59.538 60.000 0.00 0.00 0.00 2.57
2800 2844 0.811616 CAGTAGGGATGCAAGCGGAC 60.812 60.000 0.00 0.00 0.00 4.79
2839 2883 2.405892 CTGTCCGCAAACAGGAAAAG 57.594 50.000 7.43 0.00 42.42 2.27
2847 2891 5.589452 TCCGCAAACAGGAAAAGTAAACTAA 59.411 36.000 0.00 0.00 34.33 2.24
2856 2900 9.498176 ACAGGAAAAGTAAACTAACACGATTAT 57.502 29.630 0.00 0.00 0.00 1.28
2879 2923 6.461110 TTGAAGTAACTAGAGAATACCCCG 57.539 41.667 0.00 0.00 0.00 5.73
2880 2924 4.340381 TGAAGTAACTAGAGAATACCCCGC 59.660 45.833 0.00 0.00 0.00 6.13
2881 2925 2.883386 AGTAACTAGAGAATACCCCGCG 59.117 50.000 0.00 0.00 0.00 6.46
2882 2926 0.388294 AACTAGAGAATACCCCGCGC 59.612 55.000 0.00 0.00 0.00 6.86
2883 2927 1.081376 CTAGAGAATACCCCGCGCG 60.081 63.158 25.67 25.67 0.00 6.86
2884 2928 1.793134 CTAGAGAATACCCCGCGCGT 61.793 60.000 29.95 13.36 0.00 6.01
2885 2929 1.386525 TAGAGAATACCCCGCGCGTT 61.387 55.000 29.95 16.20 0.00 4.84
2886 2930 2.510691 AGAATACCCCGCGCGTTG 60.511 61.111 29.95 21.02 0.00 4.10
2887 2931 4.232248 GAATACCCCGCGCGTTGC 62.232 66.667 29.95 6.67 41.47 4.17
2888 2932 4.770874 AATACCCCGCGCGTTGCT 62.771 61.111 29.95 10.35 43.27 3.91
2899 2943 3.118454 CGTTGCTGCGGAACCGAT 61.118 61.111 17.63 0.00 42.83 4.18
2900 2944 2.677003 CGTTGCTGCGGAACCGATT 61.677 57.895 17.63 0.00 42.83 3.34
2901 2945 1.154225 GTTGCTGCGGAACCGATTG 60.154 57.895 17.63 6.79 42.83 2.67
2902 2946 2.976840 TTGCTGCGGAACCGATTGC 61.977 57.895 17.63 15.73 42.83 3.56
2903 2947 3.430862 GCTGCGGAACCGATTGCA 61.431 61.111 17.63 4.35 42.83 4.08
2904 2948 2.976840 GCTGCGGAACCGATTGCAA 61.977 57.895 17.63 0.00 42.83 4.08
2905 2949 1.802636 CTGCGGAACCGATTGCAAT 59.197 52.632 12.83 12.83 42.83 3.56
2906 2950 1.013596 CTGCGGAACCGATTGCAATA 58.986 50.000 12.97 0.00 42.83 1.90
2907 2951 1.603802 CTGCGGAACCGATTGCAATAT 59.396 47.619 12.97 0.00 42.83 1.28
2908 2952 2.805671 CTGCGGAACCGATTGCAATATA 59.194 45.455 12.97 0.00 42.83 0.86
2909 2953 3.407698 TGCGGAACCGATTGCAATATAT 58.592 40.909 12.97 0.00 42.83 0.86
2910 2954 3.818210 TGCGGAACCGATTGCAATATATT 59.182 39.130 12.97 6.58 42.83 1.28
2911 2955 4.277174 TGCGGAACCGATTGCAATATATTT 59.723 37.500 12.97 3.39 42.83 1.40
2912 2956 4.851558 GCGGAACCGATTGCAATATATTTC 59.148 41.667 12.97 11.98 42.83 2.17
2913 2957 5.561919 GCGGAACCGATTGCAATATATTTCA 60.562 40.000 12.97 0.00 42.83 2.69
2914 2958 6.079763 CGGAACCGATTGCAATATATTTCAG 58.920 40.000 12.97 9.52 42.83 3.02
2915 2959 6.293407 CGGAACCGATTGCAATATATTTCAGT 60.293 38.462 12.97 0.00 42.83 3.41
2916 2960 6.857964 GGAACCGATTGCAATATATTTCAGTG 59.142 38.462 12.97 0.00 0.00 3.66
2917 2961 7.255104 GGAACCGATTGCAATATATTTCAGTGA 60.255 37.037 12.97 0.00 0.00 3.41
2918 2962 7.750229 ACCGATTGCAATATATTTCAGTGAT 57.250 32.000 12.97 0.00 0.00 3.06
2919 2963 8.169977 ACCGATTGCAATATATTTCAGTGATT 57.830 30.769 12.97 0.00 0.00 2.57
2920 2964 8.632679 ACCGATTGCAATATATTTCAGTGATTT 58.367 29.630 12.97 0.00 0.00 2.17
3048 3092 9.556030 GTCATAACTTGTTTTAATCTAAGTGCC 57.444 33.333 0.00 0.00 33.95 5.01
3049 3093 9.290988 TCATAACTTGTTTTAATCTAAGTGCCA 57.709 29.630 0.00 0.00 33.95 4.92
3053 3097 9.908152 AACTTGTTTTAATCTAAGTGCCATAAC 57.092 29.630 0.00 0.00 33.95 1.89
3054 3098 8.234546 ACTTGTTTTAATCTAAGTGCCATAACG 58.765 33.333 0.00 0.00 32.56 3.18
3055 3099 7.675962 TGTTTTAATCTAAGTGCCATAACGT 57.324 32.000 0.00 0.00 0.00 3.99
3056 3100 8.774890 TGTTTTAATCTAAGTGCCATAACGTA 57.225 30.769 0.00 0.00 0.00 3.57
3057 3101 9.217278 TGTTTTAATCTAAGTGCCATAACGTAA 57.783 29.630 0.00 0.00 0.00 3.18
3058 3102 9.481800 GTTTTAATCTAAGTGCCATAACGTAAC 57.518 33.333 0.00 0.00 0.00 2.50
3059 3103 8.774890 TTTAATCTAAGTGCCATAACGTAACA 57.225 30.769 0.00 0.00 0.00 2.41
3060 3104 8.774890 TTAATCTAAGTGCCATAACGTAACAA 57.225 30.769 0.00 0.00 0.00 2.83
3061 3105 7.675962 AATCTAAGTGCCATAACGTAACAAA 57.324 32.000 0.00 0.00 0.00 2.83
3062 3106 7.675962 ATCTAAGTGCCATAACGTAACAAAA 57.324 32.000 0.00 0.00 0.00 2.44
3063 3107 7.493743 TCTAAGTGCCATAACGTAACAAAAA 57.506 32.000 0.00 0.00 0.00 1.94
3064 3108 8.101654 TCTAAGTGCCATAACGTAACAAAAAT 57.898 30.769 0.00 0.00 0.00 1.82
3065 3109 9.217278 TCTAAGTGCCATAACGTAACAAAAATA 57.783 29.630 0.00 0.00 0.00 1.40
3066 3110 9.828852 CTAAGTGCCATAACGTAACAAAAATAA 57.171 29.630 0.00 0.00 0.00 1.40
3068 3112 9.699703 AAGTGCCATAACGTAACAAAAATAAAT 57.300 25.926 0.00 0.00 0.00 1.40
3069 3113 9.349145 AGTGCCATAACGTAACAAAAATAAATC 57.651 29.630 0.00 0.00 0.00 2.17
3070 3114 9.130312 GTGCCATAACGTAACAAAAATAAATCA 57.870 29.630 0.00 0.00 0.00 2.57
3071 3115 9.862371 TGCCATAACGTAACAAAAATAAATCAT 57.138 25.926 0.00 0.00 0.00 2.45
3084 3128 9.549509 CAAAAATAAATCATGCATTTTGAGTGG 57.450 29.630 10.82 0.00 39.08 4.00
3085 3129 9.504708 AAAAATAAATCATGCATTTTGAGTGGA 57.495 25.926 0.00 0.00 36.09 4.02
3086 3130 8.483307 AAATAAATCATGCATTTTGAGTGGAC 57.517 30.769 0.00 0.00 36.09 4.02
3087 3131 4.460948 AATCATGCATTTTGAGTGGACC 57.539 40.909 0.00 0.00 0.00 4.46
3088 3132 3.159213 TCATGCATTTTGAGTGGACCT 57.841 42.857 0.00 0.00 0.00 3.85
3089 3133 3.499338 TCATGCATTTTGAGTGGACCTT 58.501 40.909 0.00 0.00 0.00 3.50
3090 3134 3.256383 TCATGCATTTTGAGTGGACCTTG 59.744 43.478 0.00 0.00 0.00 3.61
3091 3135 1.962807 TGCATTTTGAGTGGACCTTGG 59.037 47.619 0.00 0.00 0.00 3.61
3092 3136 2.238521 GCATTTTGAGTGGACCTTGGA 58.761 47.619 0.00 0.00 0.00 3.53
3093 3137 2.827921 GCATTTTGAGTGGACCTTGGAT 59.172 45.455 0.00 0.00 0.00 3.41
3094 3138 3.367703 GCATTTTGAGTGGACCTTGGATG 60.368 47.826 0.00 0.00 0.00 3.51
3095 3139 3.874383 TTTTGAGTGGACCTTGGATGA 57.126 42.857 0.00 0.00 0.00 2.92
3096 3140 3.423539 TTTGAGTGGACCTTGGATGAG 57.576 47.619 0.00 0.00 0.00 2.90
3097 3141 1.279496 TGAGTGGACCTTGGATGAGG 58.721 55.000 0.00 0.00 42.75 3.86
3104 3148 2.803203 CCTTGGATGAGGTGGCATG 58.197 57.895 0.00 0.00 31.89 4.06
3105 3149 0.033796 CCTTGGATGAGGTGGCATGT 60.034 55.000 0.00 0.00 31.89 3.21
3106 3150 1.100510 CTTGGATGAGGTGGCATGTG 58.899 55.000 0.00 0.00 0.00 3.21
3107 3151 0.405198 TTGGATGAGGTGGCATGTGT 59.595 50.000 0.00 0.00 0.00 3.72
3108 3152 0.322726 TGGATGAGGTGGCATGTGTG 60.323 55.000 0.00 0.00 0.00 3.82
3109 3153 1.033746 GGATGAGGTGGCATGTGTGG 61.034 60.000 0.00 0.00 0.00 4.17
3110 3154 0.322816 GATGAGGTGGCATGTGTGGT 60.323 55.000 0.00 0.00 0.00 4.16
3111 3155 0.609957 ATGAGGTGGCATGTGTGGTG 60.610 55.000 0.00 0.00 0.00 4.17
3112 3156 1.073025 GAGGTGGCATGTGTGGTGA 59.927 57.895 0.00 0.00 0.00 4.02
3113 3157 0.957395 GAGGTGGCATGTGTGGTGAG 60.957 60.000 0.00 0.00 0.00 3.51
3114 3158 1.973281 GGTGGCATGTGTGGTGAGG 60.973 63.158 0.00 0.00 0.00 3.86
3115 3159 1.228245 GTGGCATGTGTGGTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
3116 3160 1.228215 TGGCATGTGTGGTGAGGTG 60.228 57.895 0.00 0.00 0.00 4.00
3117 3161 1.073025 GGCATGTGTGGTGAGGTGA 59.927 57.895 0.00 0.00 0.00 4.02
3118 3162 0.537143 GGCATGTGTGGTGAGGTGAA 60.537 55.000 0.00 0.00 0.00 3.18
3119 3163 1.317613 GCATGTGTGGTGAGGTGAAA 58.682 50.000 0.00 0.00 0.00 2.69
3120 3164 1.267806 GCATGTGTGGTGAGGTGAAAG 59.732 52.381 0.00 0.00 0.00 2.62
3121 3165 1.881973 CATGTGTGGTGAGGTGAAAGG 59.118 52.381 0.00 0.00 0.00 3.11
3122 3166 0.916086 TGTGTGGTGAGGTGAAAGGT 59.084 50.000 0.00 0.00 0.00 3.50
3123 3167 1.308998 GTGTGGTGAGGTGAAAGGTG 58.691 55.000 0.00 0.00 0.00 4.00
3124 3168 0.916086 TGTGGTGAGGTGAAAGGTGT 59.084 50.000 0.00 0.00 0.00 4.16
3125 3169 1.308998 GTGGTGAGGTGAAAGGTGTG 58.691 55.000 0.00 0.00 0.00 3.82
3126 3170 0.465460 TGGTGAGGTGAAAGGTGTGC 60.465 55.000 0.00 0.00 0.00 4.57
3127 3171 0.465460 GGTGAGGTGAAAGGTGTGCA 60.465 55.000 0.00 0.00 0.00 4.57
3128 3172 1.609208 GTGAGGTGAAAGGTGTGCAT 58.391 50.000 0.00 0.00 0.00 3.96
3129 3173 1.267806 GTGAGGTGAAAGGTGTGCATG 59.732 52.381 0.00 0.00 0.00 4.06
3130 3174 1.142667 TGAGGTGAAAGGTGTGCATGA 59.857 47.619 0.00 0.00 0.00 3.07
3131 3175 1.808945 GAGGTGAAAGGTGTGCATGAG 59.191 52.381 0.00 0.00 0.00 2.90
3132 3176 1.421268 AGGTGAAAGGTGTGCATGAGA 59.579 47.619 0.00 0.00 0.00 3.27
3133 3177 2.040813 AGGTGAAAGGTGTGCATGAGAT 59.959 45.455 0.00 0.00 0.00 2.75
3134 3178 2.421424 GGTGAAAGGTGTGCATGAGATC 59.579 50.000 0.00 0.00 0.00 2.75
3135 3179 3.076621 GTGAAAGGTGTGCATGAGATCA 58.923 45.455 0.00 0.00 0.00 2.92
3136 3180 3.503363 GTGAAAGGTGTGCATGAGATCAA 59.497 43.478 0.00 0.00 0.00 2.57
3137 3181 3.503363 TGAAAGGTGTGCATGAGATCAAC 59.497 43.478 0.00 0.00 0.00 3.18
3138 3182 3.430042 AAGGTGTGCATGAGATCAACT 57.570 42.857 0.00 0.00 0.00 3.16
3139 3183 4.558226 AAGGTGTGCATGAGATCAACTA 57.442 40.909 0.00 0.00 0.00 2.24
3140 3184 4.558226 AGGTGTGCATGAGATCAACTAA 57.442 40.909 0.00 0.00 0.00 2.24
3141 3185 5.108187 AGGTGTGCATGAGATCAACTAAT 57.892 39.130 0.00 0.00 0.00 1.73
3142 3186 6.239217 AGGTGTGCATGAGATCAACTAATA 57.761 37.500 0.00 0.00 0.00 0.98
3143 3187 6.653020 AGGTGTGCATGAGATCAACTAATAA 58.347 36.000 0.00 0.00 0.00 1.40
3144 3188 7.285566 AGGTGTGCATGAGATCAACTAATAAT 58.714 34.615 0.00 0.00 0.00 1.28
3145 3189 7.228108 AGGTGTGCATGAGATCAACTAATAATG 59.772 37.037 0.00 0.00 0.00 1.90
3146 3190 7.358066 GTGTGCATGAGATCAACTAATAATGG 58.642 38.462 0.00 0.00 0.00 3.16
3147 3191 7.227314 GTGTGCATGAGATCAACTAATAATGGA 59.773 37.037 0.00 0.00 0.00 3.41
3148 3192 7.774625 TGTGCATGAGATCAACTAATAATGGAA 59.225 33.333 0.00 0.00 0.00 3.53
3149 3193 8.623903 GTGCATGAGATCAACTAATAATGGAAA 58.376 33.333 0.00 0.00 0.00 3.13
3150 3194 9.358406 TGCATGAGATCAACTAATAATGGAAAT 57.642 29.630 0.00 0.00 0.00 2.17
3174 3218 5.375417 TTTTTCTCATGCATGTAGTGGTG 57.625 39.130 25.43 0.00 0.00 4.17
3175 3219 2.696989 TCTCATGCATGTAGTGGTGG 57.303 50.000 25.43 7.67 0.00 4.61
3176 3220 2.187100 TCTCATGCATGTAGTGGTGGA 58.813 47.619 25.43 9.56 0.00 4.02
3177 3221 2.093500 TCTCATGCATGTAGTGGTGGAC 60.093 50.000 25.43 0.00 0.00 4.02
3178 3222 1.065491 TCATGCATGTAGTGGTGGACC 60.065 52.381 25.43 0.00 0.00 4.46
3179 3223 1.065199 CATGCATGTAGTGGTGGACCT 60.065 52.381 18.91 0.00 36.82 3.85
3180 3224 1.064003 TGCATGTAGTGGTGGACCTT 58.936 50.000 0.00 0.00 36.82 3.50
3181 3225 1.423541 TGCATGTAGTGGTGGACCTTT 59.576 47.619 0.00 0.00 36.82 3.11
3182 3226 1.812571 GCATGTAGTGGTGGACCTTTG 59.187 52.381 0.00 0.00 36.82 2.77
3183 3227 2.552155 GCATGTAGTGGTGGACCTTTGA 60.552 50.000 0.00 0.00 36.82 2.69
3184 3228 3.873801 GCATGTAGTGGTGGACCTTTGAT 60.874 47.826 0.00 0.00 36.82 2.57
3185 3229 3.417069 TGTAGTGGTGGACCTTTGATG 57.583 47.619 0.00 0.00 36.82 3.07
3186 3230 2.976185 TGTAGTGGTGGACCTTTGATGA 59.024 45.455 0.00 0.00 36.82 2.92
3187 3231 2.867109 AGTGGTGGACCTTTGATGAG 57.133 50.000 0.00 0.00 36.82 2.90
3188 3232 1.352352 AGTGGTGGACCTTTGATGAGG 59.648 52.381 0.00 0.00 42.75 3.86
3196 3240 1.843368 CCTTTGATGAGGTGGCATGT 58.157 50.000 0.00 0.00 31.89 3.21
3197 3241 1.475280 CCTTTGATGAGGTGGCATGTG 59.525 52.381 0.00 0.00 31.89 3.21
3198 3242 2.165167 CTTTGATGAGGTGGCATGTGT 58.835 47.619 0.00 0.00 0.00 3.72
3199 3243 1.536940 TTGATGAGGTGGCATGTGTG 58.463 50.000 0.00 0.00 0.00 3.82
3218 3262 8.839343 CATGTGTGCATGTTAAGATAAATAGGA 58.161 33.333 0.00 0.00 45.48 2.94
3219 3263 8.978874 TGTGTGCATGTTAAGATAAATAGGAT 57.021 30.769 0.00 0.00 0.00 3.24
3224 3268 9.725019 TGCATGTTAAGATAAATAGGATAGTGG 57.275 33.333 0.00 0.00 0.00 4.00
3225 3269 9.167311 GCATGTTAAGATAAATAGGATAGTGGG 57.833 37.037 0.00 0.00 0.00 4.61
3226 3270 9.672673 CATGTTAAGATAAATAGGATAGTGGGG 57.327 37.037 0.00 0.00 0.00 4.96
3227 3271 9.629649 ATGTTAAGATAAATAGGATAGTGGGGA 57.370 33.333 0.00 0.00 0.00 4.81
3228 3272 9.629649 TGTTAAGATAAATAGGATAGTGGGGAT 57.370 33.333 0.00 0.00 0.00 3.85
3230 3274 9.852784 TTAAGATAAATAGGATAGTGGGGATCA 57.147 33.333 0.00 0.00 0.00 2.92
3231 3275 8.757307 AAGATAAATAGGATAGTGGGGATCAA 57.243 34.615 0.00 0.00 0.00 2.57
3232 3276 8.152023 AGATAAATAGGATAGTGGGGATCAAC 57.848 38.462 0.00 0.00 0.00 3.18
3233 3277 7.964293 AGATAAATAGGATAGTGGGGATCAACT 59.036 37.037 0.00 0.00 0.00 3.16
3234 3278 6.848562 AAATAGGATAGTGGGGATCAACTT 57.151 37.500 0.00 0.00 0.00 2.66
3235 3279 6.441088 AATAGGATAGTGGGGATCAACTTC 57.559 41.667 0.00 0.00 0.00 3.01
3236 3280 4.014273 AGGATAGTGGGGATCAACTTCT 57.986 45.455 0.00 0.00 0.00 2.85
3237 3281 4.375313 AGGATAGTGGGGATCAACTTCTT 58.625 43.478 0.00 0.00 0.00 2.52
3238 3282 5.538877 AGGATAGTGGGGATCAACTTCTTA 58.461 41.667 0.00 0.00 0.00 2.10
3239 3283 6.153924 AGGATAGTGGGGATCAACTTCTTAT 58.846 40.000 0.00 0.00 0.00 1.73
3240 3284 6.043706 AGGATAGTGGGGATCAACTTCTTATG 59.956 42.308 0.00 0.00 0.00 1.90
3241 3285 6.183361 GGATAGTGGGGATCAACTTCTTATGT 60.183 42.308 0.00 0.00 0.00 2.29
3242 3286 7.016268 GGATAGTGGGGATCAACTTCTTATGTA 59.984 40.741 0.00 0.00 0.00 2.29
3243 3287 6.831664 AGTGGGGATCAACTTCTTATGTAT 57.168 37.500 0.00 0.00 0.00 2.29
3244 3288 7.931015 AGTGGGGATCAACTTCTTATGTATA 57.069 36.000 0.00 0.00 0.00 1.47
3245 3289 8.511748 AGTGGGGATCAACTTCTTATGTATAT 57.488 34.615 0.00 0.00 0.00 0.86
3246 3290 9.615660 AGTGGGGATCAACTTCTTATGTATATA 57.384 33.333 0.00 0.00 0.00 0.86
3247 3291 9.877178 GTGGGGATCAACTTCTTATGTATATAG 57.123 37.037 0.00 0.00 0.00 1.31
3248 3292 9.046846 TGGGGATCAACTTCTTATGTATATAGG 57.953 37.037 0.00 0.00 0.00 2.57
3249 3293 9.268282 GGGGATCAACTTCTTATGTATATAGGA 57.732 37.037 0.00 0.00 0.00 2.94
3273 3317 8.034804 GGATGAGGTTAGTGCAATTTTTGTTAT 58.965 33.333 0.00 0.00 0.00 1.89
3275 3319 6.644592 TGAGGTTAGTGCAATTTTTGTTATGC 59.355 34.615 0.00 0.00 39.22 3.14
3308 3352 1.070445 CTTCCGCCTGCATCCCTAG 59.930 63.158 0.00 0.00 0.00 3.02
3309 3353 1.689233 TTCCGCCTGCATCCCTAGT 60.689 57.895 0.00 0.00 0.00 2.57
3310 3354 1.686325 TTCCGCCTGCATCCCTAGTC 61.686 60.000 0.00 0.00 0.00 2.59
3311 3355 2.423446 CGCCTGCATCCCTAGTCC 59.577 66.667 0.00 0.00 0.00 3.85
3312 3356 2.832498 GCCTGCATCCCTAGTCCC 59.168 66.667 0.00 0.00 0.00 4.46
3313 3357 1.768077 GCCTGCATCCCTAGTCCCT 60.768 63.158 0.00 0.00 0.00 4.20
3314 3358 0.471971 GCCTGCATCCCTAGTCCCTA 60.472 60.000 0.00 0.00 0.00 3.53
3334 3378 1.592400 CTGCAGGGTGCTCATGGTTG 61.592 60.000 5.57 0.00 45.31 3.77
3336 3380 1.181098 GCAGGGTGCTCATGGTTGTT 61.181 55.000 0.00 0.00 40.96 2.83
3337 3381 0.883833 CAGGGTGCTCATGGTTGTTC 59.116 55.000 0.00 0.00 0.00 3.18
3338 3382 0.773644 AGGGTGCTCATGGTTGTTCT 59.226 50.000 0.00 0.00 0.00 3.01
3373 3417 2.194271 GTGCGTGCTAGTGTCTATTCC 58.806 52.381 0.00 0.00 0.00 3.01
3377 3421 2.799917 CGTGCTAGTGTCTATTCCCTGC 60.800 54.545 0.00 0.00 0.00 4.85
3382 3426 1.834263 AGTGTCTATTCCCTGCTGGTC 59.166 52.381 9.00 0.00 34.77 4.02
3388 3432 2.514458 ATTCCCTGCTGGTCGAATTT 57.486 45.000 9.00 0.00 34.77 1.82
3389 3433 3.644966 ATTCCCTGCTGGTCGAATTTA 57.355 42.857 9.00 0.00 34.77 1.40
3408 3456 8.863049 CGAATTTATTTTGTTTATTGCTCTGCT 58.137 29.630 0.00 0.00 0.00 4.24
3469 3517 4.382685 CCTTAGTTGGAAATAGCTCACCGA 60.383 45.833 0.00 0.00 0.00 4.69
3484 3533 2.554462 TCACCGATCTGCTACTAGATGC 59.446 50.000 0.00 0.30 37.53 3.91
3628 3688 3.245229 ACATGCCATAACCTGAAACCTGA 60.245 43.478 0.00 0.00 0.00 3.86
3631 3691 4.415596 TGCCATAACCTGAAACCTGAAAT 58.584 39.130 0.00 0.00 0.00 2.17
3632 3692 4.462483 TGCCATAACCTGAAACCTGAAATC 59.538 41.667 0.00 0.00 0.00 2.17
3647 3707 4.527564 CTGAAATCGTTTGACAGTGTTCC 58.472 43.478 0.00 0.00 0.00 3.62
3756 3816 4.757149 GCTGAAACTAGTGTGATTTCTGGT 59.243 41.667 0.00 0.00 33.99 4.00
3775 3835 3.572255 TGGTGACAAGCCAGGTAAATTTC 59.428 43.478 0.00 0.00 37.44 2.17
3821 3881 9.322773 TGTATTTGAGAGATGAGCTTATTGAAG 57.677 33.333 0.00 0.00 35.60 3.02
3844 3904 4.277476 ACAACTTCCTTGGAATTGACACA 58.723 39.130 20.54 0.00 33.66 3.72
3888 3948 9.155975 GGTTATATTCCAAGCATACTAGATGTG 57.844 37.037 0.00 0.00 0.00 3.21
3934 3994 4.404073 AGGTCTGGAATGCAACTCTAGTAG 59.596 45.833 10.92 0.00 0.00 2.57
3951 4011 7.599245 ACTCTAGTAGTCTGTTTATGTTTGCAC 59.401 37.037 0.00 0.00 30.33 4.57
3984 4044 4.342378 ACTCTTCACAGTTCTTGTCAGCTA 59.658 41.667 0.00 0.00 38.16 3.32
4104 4164 9.030452 AGGAAGTGCACAACCAAATAAATTATA 57.970 29.630 26.11 0.00 0.00 0.98
4107 4167 8.996024 AGTGCACAACCAAATAAATTATAACC 57.004 30.769 21.04 0.00 0.00 2.85
4108 4168 7.757624 AGTGCACAACCAAATAAATTATAACCG 59.242 33.333 21.04 0.00 0.00 4.44
4109 4169 7.755822 GTGCACAACCAAATAAATTATAACCGA 59.244 33.333 13.17 0.00 0.00 4.69
4110 4170 7.971168 TGCACAACCAAATAAATTATAACCGAG 59.029 33.333 0.00 0.00 0.00 4.63
4111 4171 7.971722 GCACAACCAAATAAATTATAACCGAGT 59.028 33.333 0.00 0.00 0.00 4.18
4112 4172 9.849166 CACAACCAAATAAATTATAACCGAGTT 57.151 29.630 0.00 0.00 0.00 3.01
4156 4216 1.722011 ACCGAGTTATCAGTTTGGCG 58.278 50.000 0.00 0.00 0.00 5.69
4178 4238 4.201666 CGTTCACATGGGTTGTTTGTTTTG 60.202 41.667 0.00 0.00 36.00 2.44
4297 4357 2.404693 CGTTGATTTGAACATGTTGCCG 59.595 45.455 17.58 2.53 0.00 5.69
4313 4373 1.221840 CCGTTCTGGCATGGCTACT 59.778 57.895 21.08 0.00 0.00 2.57
4326 4386 4.154918 GCATGGCTACTGGTTTATAGATGC 59.845 45.833 0.00 0.00 0.00 3.91
4331 4391 4.040461 GCTACTGGTTTATAGATGCCCTCA 59.960 45.833 0.00 0.00 0.00 3.86
4333 4393 4.978099 ACTGGTTTATAGATGCCCTCATG 58.022 43.478 0.00 0.00 31.96 3.07
4340 4400 0.846693 AGATGCCCTCATGTAACCCC 59.153 55.000 0.00 0.00 31.96 4.95
4345 4405 1.522900 CCCTCATGTAACCCCCTCAT 58.477 55.000 0.00 0.00 0.00 2.90
4350 4410 2.771943 TCATGTAACCCCCTCATCAGAC 59.228 50.000 0.00 0.00 0.00 3.51
4357 4417 1.768870 CCCCCTCATCAGACGGTTAAT 59.231 52.381 0.00 0.00 0.00 1.40
4358 4418 2.224305 CCCCCTCATCAGACGGTTAATC 60.224 54.545 0.00 0.00 0.00 1.75
4359 4419 2.434336 CCCCTCATCAGACGGTTAATCA 59.566 50.000 0.00 0.00 0.00 2.57
4360 4420 3.493350 CCCCTCATCAGACGGTTAATCAG 60.493 52.174 0.00 0.00 0.00 2.90
4475 4535 5.568685 TGAGGAAGAGATGACTAACTTCG 57.431 43.478 0.00 0.00 39.39 3.79
4491 4551 0.889186 TTCGCCCACTCCAAGAAAGC 60.889 55.000 0.00 0.00 0.00 3.51
4508 4568 2.464459 GCCGAATCCGACAGGCTTG 61.464 63.158 0.00 0.00 45.67 4.01
4542 4602 3.439857 ACATAACACATCAAGCAGGGT 57.560 42.857 0.00 0.00 0.00 4.34
4703 4769 8.360390 TGTTGTATACTGTATTATCTGCCTCAG 58.640 37.037 5.52 0.00 0.00 3.35
4715 4781 0.534203 TGCCTCAGACGTTTGGAACC 60.534 55.000 6.21 0.00 0.00 3.62
4768 4834 4.154195 GCTCGCTTAGGATCTTTGTTTGAA 59.846 41.667 0.00 0.00 0.00 2.69
4779 4845 7.182930 AGGATCTTTGTTTGAATAGTCTAGGGT 59.817 37.037 0.00 0.00 0.00 4.34
4840 4907 9.440761 ACTGATCTTACTAAATGGTCTCCTATT 57.559 33.333 0.00 0.00 0.00 1.73
4860 4927 3.907894 TTTAGTTGGTGATTGGTTCGC 57.092 42.857 0.00 0.00 0.00 4.70
4868 4935 3.055458 TGGTGATTGGTTCGCTCAGATTA 60.055 43.478 0.00 0.00 35.11 1.75
4869 4936 4.130118 GGTGATTGGTTCGCTCAGATTAT 58.870 43.478 0.00 0.00 35.11 1.28
4874 4941 2.139118 GGTTCGCTCAGATTATGCTCC 58.861 52.381 0.00 0.00 0.00 4.70
4877 4944 1.342496 TCGCTCAGATTATGCTCCTGG 59.658 52.381 0.00 0.00 0.00 4.45
4878 4945 1.342496 CGCTCAGATTATGCTCCTGGA 59.658 52.381 0.00 0.00 0.00 3.86
4882 5064 5.177326 GCTCAGATTATGCTCCTGGATTAG 58.823 45.833 0.00 0.00 0.00 1.73
4896 6436 4.220602 CCTGGATTAGGTTTTTGGGTTCAG 59.779 45.833 0.00 0.00 42.00 3.02
4924 6464 3.182967 CAGTACTGCAGATCGAAAGTCC 58.817 50.000 23.35 0.00 0.00 3.85
4925 6465 2.826128 AGTACTGCAGATCGAAAGTCCA 59.174 45.455 23.35 0.00 0.00 4.02
5063 6655 4.587684 GCATAGCCTACCTACCTTTCTACA 59.412 45.833 0.00 0.00 0.00 2.74
5095 6687 1.744368 CTCTGTTGCTGCATCCGCT 60.744 57.895 1.84 0.00 39.64 5.52
5325 6917 1.152368 CCCAATCCCAGCCCTCATC 59.848 63.158 0.00 0.00 0.00 2.92
5326 6918 1.152368 CCAATCCCAGCCCTCATCC 59.848 63.158 0.00 0.00 0.00 3.51
5327 6919 1.358830 CCAATCCCAGCCCTCATCCT 61.359 60.000 0.00 0.00 0.00 3.24
5328 6920 0.554792 CAATCCCAGCCCTCATCCTT 59.445 55.000 0.00 0.00 0.00 3.36
5329 6921 0.849417 AATCCCAGCCCTCATCCTTC 59.151 55.000 0.00 0.00 0.00 3.46
5330 6922 1.064824 ATCCCAGCCCTCATCCTTCC 61.065 60.000 0.00 0.00 0.00 3.46
5331 6923 2.761465 CCCAGCCCTCATCCTTCCC 61.761 68.421 0.00 0.00 0.00 3.97
5332 6924 2.761465 CCAGCCCTCATCCTTCCCC 61.761 68.421 0.00 0.00 0.00 4.81
5388 6980 1.938585 TCCCTCTACAGGACCAAGTG 58.061 55.000 0.00 0.00 43.65 3.16
5405 6997 2.114411 GGTTTTCCGTCCCTGCCA 59.886 61.111 0.00 0.00 0.00 4.92
5459 7051 3.038417 GCGCGTGACTTGTGCTCT 61.038 61.111 8.43 0.00 39.67 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.986996 TCTGATGAAGGCATGAAGTGA 57.013 42.857 0.00 0.00 34.11 3.41
17 18 3.194116 GGCTTGAAAATCTGATGAAGGCA 59.806 43.478 14.93 0.00 36.35 4.75
36 37 2.127708 CCCCACTAGTATTTCCTGGCT 58.872 52.381 0.00 0.00 0.00 4.75
50 51 1.307343 CATCCACCTCCTCCCCACT 60.307 63.158 0.00 0.00 0.00 4.00
55 56 1.202746 GCTTCATCATCCACCTCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
114 115 3.294493 CAGTGGCAACCGGGTTGG 61.294 66.667 34.18 19.69 42.99 3.77
123 124 1.311859 CTCTTGTGCTTCAGTGGCAA 58.688 50.000 0.00 0.00 41.54 4.52
146 147 3.643199 TGCCATGTTAGCATCTGGTTA 57.357 42.857 1.75 0.00 34.69 2.85
182 183 3.379445 GGTCGCCGAGGGTTGAGA 61.379 66.667 0.00 0.00 0.00 3.27
193 194 1.199327 GTTTAAGCTTCAAGGGTCGCC 59.801 52.381 0.00 0.00 0.00 5.54
201 209 8.908903 TCTTCCAAACATAAGTTTAAGCTTCAA 58.091 29.630 7.93 0.00 45.80 2.69
223 231 7.559590 ACAAGCCACATATGACTATTTCTTC 57.440 36.000 10.38 0.00 0.00 2.87
232 240 7.910162 CACAAACTATTACAAGCCACATATGAC 59.090 37.037 10.38 0.00 0.00 3.06
233 241 7.609918 ACACAAACTATTACAAGCCACATATGA 59.390 33.333 10.38 0.00 0.00 2.15
290 307 7.909121 CAGTTCAAGATAATTTCTGATGTGCTC 59.091 37.037 0.00 0.00 33.93 4.26
355 372 8.203937 TCATACTAACAATAAATTGACGGGTG 57.796 34.615 9.60 2.32 40.14 4.61
398 421 9.421806 CATTGTTTAAGGTTTATCAAGATGCAA 57.578 29.630 0.00 0.00 0.00 4.08
423 446 2.108075 TCTTTTTCTCTCCATGCCCACA 59.892 45.455 0.00 0.00 0.00 4.17
431 454 5.671493 ACTCTCGTTTTCTTTTTCTCTCCA 58.329 37.500 0.00 0.00 0.00 3.86
459 482 6.184789 GTGGTGTTTATTCCCCATTAGAGAA 58.815 40.000 0.00 0.00 0.00 2.87
460 483 5.628200 CGTGGTGTTTATTCCCCATTAGAGA 60.628 44.000 0.00 0.00 0.00 3.10
520 543 3.343972 GCTGGACAAGCGAGCAAA 58.656 55.556 0.00 0.00 46.36 3.68
541 564 1.664151 GGATCGGTCAATTTCACGACC 59.336 52.381 0.00 3.16 46.88 4.79
631 654 0.402504 AGAACAATGGTTACCCCGCA 59.597 50.000 0.00 0.00 37.36 5.69
633 656 2.027561 TCAGAGAACAATGGTTACCCCG 60.028 50.000 0.00 0.00 37.36 5.73
634 657 3.713826 TCAGAGAACAATGGTTACCCC 57.286 47.619 0.00 0.00 37.36 4.95
635 658 7.696992 TTTATTCAGAGAACAATGGTTACCC 57.303 36.000 0.00 0.00 37.36 3.69
688 711 9.226606 AGAAACATGTCAGTTATTTCCGAATTA 57.773 29.630 0.00 0.00 31.05 1.40
689 712 8.110860 AGAAACATGTCAGTTATTTCCGAATT 57.889 30.769 0.00 0.00 31.05 2.17
690 713 7.687941 AGAAACATGTCAGTTATTTCCGAAT 57.312 32.000 0.00 0.00 31.05 3.34
694 717 9.994432 CAGAATAGAAACATGTCAGTTATTTCC 57.006 33.333 0.00 0.00 31.05 3.13
707 730 8.617290 ACGGTTTTAGTTCAGAATAGAAACAT 57.383 30.769 14.78 5.33 0.00 2.71
718 741 3.121738 AGTGGGACGGTTTTAGTTCAG 57.878 47.619 0.00 0.00 0.00 3.02
732 755 4.566907 CCCTTCTTTCGGAAATAAGTGGGA 60.567 45.833 20.42 5.41 37.88 4.37
733 756 3.694566 CCCTTCTTTCGGAAATAAGTGGG 59.305 47.826 20.42 15.19 33.57 4.61
736 759 5.500546 ACTCCCTTCTTTCGGAAATAAGT 57.499 39.130 20.42 6.52 33.07 2.24
737 760 6.641474 AGTACTCCCTTCTTTCGGAAATAAG 58.359 40.000 17.13 17.13 33.07 1.73
738 761 6.351626 GGAGTACTCCCTTCTTTCGGAAATAA 60.352 42.308 28.87 2.53 43.94 1.40
739 762 5.128335 GGAGTACTCCCTTCTTTCGGAAATA 59.872 44.000 28.87 0.00 43.94 1.40
740 763 4.081031 GGAGTACTCCCTTCTTTCGGAAAT 60.081 45.833 28.87 0.00 43.94 2.17
741 764 3.260128 GGAGTACTCCCTTCTTTCGGAAA 59.740 47.826 28.87 2.78 43.94 3.13
742 765 2.830321 GGAGTACTCCCTTCTTTCGGAA 59.170 50.000 28.87 0.00 43.94 4.30
743 766 2.454538 GGAGTACTCCCTTCTTTCGGA 58.545 52.381 28.87 0.00 43.94 4.55
744 767 2.963548 GGAGTACTCCCTTCTTTCGG 57.036 55.000 28.87 0.00 43.94 4.30
755 778 1.553706 TTGGAACGGAGGGAGTACTC 58.446 55.000 14.87 14.87 36.76 2.59
756 779 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
757 780 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
758 781 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
759 782 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
760 783 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
761 784 5.427481 AGTTATCTATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
762 785 5.681639 AGTTATCTATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
763 786 6.346096 TGAGTTATCTATTTTGGAACGGAGG 58.654 40.000 0.00 0.00 0.00 4.30
764 787 7.843490 TTGAGTTATCTATTTTGGAACGGAG 57.157 36.000 0.00 0.00 0.00 4.63
765 788 8.801882 AATTGAGTTATCTATTTTGGAACGGA 57.198 30.769 0.00 0.00 28.12 4.69
766 789 9.855021 AAAATTGAGTTATCTATTTTGGAACGG 57.145 29.630 8.79 0.00 44.08 4.44
808 831 9.471084 CCGTTCCAAAATAAATAACTCAACTTT 57.529 29.630 0.00 0.00 0.00 2.66
809 832 8.852135 TCCGTTCCAAAATAAATAACTCAACTT 58.148 29.630 0.00 0.00 0.00 2.66
810 833 8.398878 TCCGTTCCAAAATAAATAACTCAACT 57.601 30.769 0.00 0.00 0.00 3.16
811 834 7.753580 CCTCCGTTCCAAAATAAATAACTCAAC 59.246 37.037 0.00 0.00 0.00 3.18
812 835 7.094118 CCCTCCGTTCCAAAATAAATAACTCAA 60.094 37.037 0.00 0.00 0.00 3.02
813 836 6.376018 CCCTCCGTTCCAAAATAAATAACTCA 59.624 38.462 0.00 0.00 0.00 3.41
814 837 6.600427 TCCCTCCGTTCCAAAATAAATAACTC 59.400 38.462 0.00 0.00 0.00 3.01
815 838 6.486941 TCCCTCCGTTCCAAAATAAATAACT 58.513 36.000 0.00 0.00 0.00 2.24
816 839 6.376299 ACTCCCTCCGTTCCAAAATAAATAAC 59.624 38.462 0.00 0.00 0.00 1.89
817 840 6.486941 ACTCCCTCCGTTCCAAAATAAATAA 58.513 36.000 0.00 0.00 0.00 1.40
818 841 6.069705 ACTCCCTCCGTTCCAAAATAAATA 57.930 37.500 0.00 0.00 0.00 1.40
820 843 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
827 850 0.325296 ATGCTACTCCCTCCGTTCCA 60.325 55.000 0.00 0.00 0.00 3.53
828 851 0.831307 AATGCTACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
832 855 2.403252 ACAAAATGCTACTCCCTCCG 57.597 50.000 0.00 0.00 0.00 4.63
834 857 7.448748 TCTTTAAACAAAATGCTACTCCCTC 57.551 36.000 0.00 0.00 0.00 4.30
862 885 2.434884 CTTGCACTGCCGGTCGAT 60.435 61.111 1.90 0.00 0.00 3.59
867 890 2.906897 AACCACTTGCACTGCCGG 60.907 61.111 0.00 0.00 0.00 6.13
1123 1158 2.203938 AGAGGAGGCCGTGGGAAA 60.204 61.111 0.00 0.00 0.00 3.13
1187 1222 0.460109 CACCGCTTCGACATCATCCA 60.460 55.000 0.00 0.00 0.00 3.41
1311 1347 4.018415 CCCGATTCCCCTGAACCATAATAT 60.018 45.833 0.00 0.00 32.13 1.28
1322 1358 2.595655 GAACCCCCGATTCCCCTG 59.404 66.667 0.00 0.00 0.00 4.45
1330 1366 1.978455 ATAATGCAGCGAACCCCCGA 61.978 55.000 0.00 0.00 0.00 5.14
1331 1367 1.507141 GATAATGCAGCGAACCCCCG 61.507 60.000 0.00 0.00 0.00 5.73
1378 1417 8.939201 ACAGAAGATGTTCACAGTATAATCAG 57.061 34.615 5.28 0.00 39.96 2.90
1684 1727 6.576662 TTAACGCAATCCTGGAAAACATAA 57.423 33.333 0.00 0.00 0.00 1.90
1703 1746 6.609237 TCTGCATCACTAATCATGCTTAAC 57.391 37.500 5.56 0.00 44.90 2.01
1730 1773 8.150296 ACCTTGTTTGGAGAAATTAATCCTTTG 58.850 33.333 9.58 0.00 36.50 2.77
1954 1998 3.263261 TCCAAATGCGCGTACAAGAATA 58.737 40.909 8.43 0.00 0.00 1.75
1957 2001 1.075542 CTCCAAATGCGCGTACAAGA 58.924 50.000 8.43 0.00 0.00 3.02
1984 2028 5.763444 CTGTTGTAGGATCAGTTAACACG 57.237 43.478 8.61 0.00 0.00 4.49
2008 2052 4.540824 CTTTGTCAACAGCTCCTTTTAGC 58.459 43.478 0.00 0.00 43.11 3.09
2032 2076 4.326548 GGTGTCTTCGAAACTATTTCCTCG 59.673 45.833 0.00 0.00 36.30 4.63
2092 2136 3.941483 ACAAAGTCTCAACCTCACTGTTG 59.059 43.478 0.00 0.00 45.51 3.33
2114 2158 8.210265 TGACTGTATGAGTAAATGATAATGGCA 58.790 33.333 0.00 0.00 33.83 4.92
2135 2179 4.678742 CACGTCACAGATAGCATATGACTG 59.321 45.833 6.97 11.52 38.00 3.51
2136 2180 4.261783 CCACGTCACAGATAGCATATGACT 60.262 45.833 6.97 5.92 38.00 3.41
2137 2181 3.983988 CCACGTCACAGATAGCATATGAC 59.016 47.826 6.97 0.00 37.02 3.06
2138 2182 3.552890 GCCACGTCACAGATAGCATATGA 60.553 47.826 6.97 0.00 0.00 2.15
2139 2183 2.733552 GCCACGTCACAGATAGCATATG 59.266 50.000 0.00 0.00 0.00 1.78
2140 2184 2.365293 TGCCACGTCACAGATAGCATAT 59.635 45.455 0.00 0.00 0.00 1.78
2141 2185 1.754226 TGCCACGTCACAGATAGCATA 59.246 47.619 0.00 0.00 0.00 3.14
2142 2186 0.536724 TGCCACGTCACAGATAGCAT 59.463 50.000 0.00 0.00 0.00 3.79
2156 2200 4.377635 GCAAATGAATTTCACATGTGCCAC 60.378 41.667 21.38 10.41 46.87 5.01
2157 2201 3.747010 GCAAATGAATTTCACATGTGCCA 59.253 39.130 21.38 10.00 46.87 4.92
2207 2251 2.032680 TCTGTAATTACCCAAGCGGC 57.967 50.000 13.01 0.00 33.26 6.53
2210 2254 4.781934 AGTGGATCTGTAATTACCCAAGC 58.218 43.478 13.01 1.53 0.00 4.01
2289 2333 1.033746 CCAGTCCCAATGCTCGCAAT 61.034 55.000 0.00 0.00 0.00 3.56
2309 2353 1.612442 AGTGCCGGTGATGGTACCT 60.612 57.895 14.36 0.00 44.76 3.08
2312 2356 2.665089 CCCAGTGCCGGTGATGGTA 61.665 63.158 16.52 0.00 0.00 3.25
2391 2435 4.578928 GCAGTTCTCCTAAAACCTGAAACA 59.421 41.667 0.00 0.00 0.00 2.83
2399 2443 9.129209 GTCATTTTAATGCAGTTCTCCTAAAAC 57.871 33.333 0.00 0.00 36.36 2.43
2405 2449 7.912250 CACATAGTCATTTTAATGCAGTTCTCC 59.088 37.037 0.00 0.00 36.36 3.71
2408 2452 8.970691 AACACATAGTCATTTTAATGCAGTTC 57.029 30.769 0.00 0.00 36.36 3.01
2411 2455 9.494479 CAGTAACACATAGTCATTTTAATGCAG 57.506 33.333 0.00 0.00 36.36 4.41
2428 2472 4.998033 TGAAGTTGTTGACACAGTAACACA 59.002 37.500 0.00 0.00 36.61 3.72
2429 2473 5.321516 GTGAAGTTGTTGACACAGTAACAC 58.678 41.667 0.00 0.00 36.61 3.32
2435 2479 2.364632 TGGGTGAAGTTGTTGACACAG 58.635 47.619 0.00 0.00 26.81 3.66
2462 2506 6.154203 TGCAACAACATTGGAAAAGTATGA 57.846 33.333 0.00 0.00 0.00 2.15
2467 2511 6.841443 TGTAATGCAACAACATTGGAAAAG 57.159 33.333 0.00 0.00 40.43 2.27
2497 2541 3.096852 TCCACCAACGACAGTAGATGAT 58.903 45.455 0.00 0.00 0.00 2.45
2500 2544 2.418746 GCATCCACCAACGACAGTAGAT 60.419 50.000 0.00 0.00 0.00 1.98
2504 2548 0.320771 GAGCATCCACCAACGACAGT 60.321 55.000 0.00 0.00 0.00 3.55
2525 2569 8.687242 TCACAAAGTTAAATCATGGTGTAAACA 58.313 29.630 0.00 0.00 0.00 2.83
2532 2576 6.040842 AGCACTTCACAAAGTTAAATCATGGT 59.959 34.615 0.00 0.00 43.28 3.55
2538 2582 9.248291 CACATTAAGCACTTCACAAAGTTAAAT 57.752 29.630 0.00 0.00 43.28 1.40
2601 2645 7.767198 GCCTGTAGTTTGTATATTTACACTGGA 59.233 37.037 9.35 0.00 38.05 3.86
2620 2664 6.038271 GGGTTTGTGTATATTTCTGCCTGTAG 59.962 42.308 0.00 0.00 0.00 2.74
2716 2760 1.964552 CCTCTAGCCAATGGAGCAAG 58.035 55.000 2.05 0.00 35.25 4.01
2762 2806 3.450115 GTGGAGGCTAGGCGTCGT 61.450 66.667 11.10 0.00 43.28 4.34
2766 2810 1.320344 TACTGTGTGGAGGCTAGGCG 61.320 60.000 11.10 0.00 0.00 5.52
2778 2822 0.391661 CGCTTGCATCCCTACTGTGT 60.392 55.000 0.00 0.00 0.00 3.72
2779 2823 1.091771 CCGCTTGCATCCCTACTGTG 61.092 60.000 0.00 0.00 0.00 3.66
2782 2826 1.522569 GTCCGCTTGCATCCCTACT 59.477 57.895 0.00 0.00 0.00 2.57
2856 2900 5.163478 GCGGGGTATTCTCTAGTTACTTCAA 60.163 44.000 0.00 0.00 0.00 2.69
2857 2901 4.340381 GCGGGGTATTCTCTAGTTACTTCA 59.660 45.833 0.00 0.00 0.00 3.02
2858 2902 4.556302 CGCGGGGTATTCTCTAGTTACTTC 60.556 50.000 0.00 0.00 0.00 3.01
2859 2903 3.317430 CGCGGGGTATTCTCTAGTTACTT 59.683 47.826 0.00 0.00 0.00 2.24
2861 2905 2.606551 GCGCGGGGTATTCTCTAGTTAC 60.607 54.545 8.83 0.00 0.00 2.50
2863 2907 0.388294 GCGCGGGGTATTCTCTAGTT 59.612 55.000 8.83 0.00 0.00 2.24
2865 2909 1.081376 CGCGCGGGGTATTCTCTAG 60.081 63.158 24.84 0.00 0.00 2.43
2866 2910 1.386525 AACGCGCGGGGTATTCTCTA 61.387 55.000 35.22 0.00 0.00 2.43
2868 2912 2.202837 AACGCGCGGGGTATTCTC 60.203 61.111 35.22 0.00 0.00 2.87
2869 2913 2.510691 CAACGCGCGGGGTATTCT 60.511 61.111 35.22 7.19 0.00 2.40
2870 2914 4.232248 GCAACGCGCGGGGTATTC 62.232 66.667 35.22 11.46 0.00 1.75
2882 2926 2.677003 AATCGGTTCCGCAGCAACG 61.677 57.895 6.35 0.00 0.00 4.10
2883 2927 1.154225 CAATCGGTTCCGCAGCAAC 60.154 57.895 6.35 0.00 0.00 4.17
2884 2928 2.976840 GCAATCGGTTCCGCAGCAA 61.977 57.895 6.35 0.00 0.00 3.91
2885 2929 3.430862 GCAATCGGTTCCGCAGCA 61.431 61.111 6.35 0.00 0.00 4.41
2886 2930 2.270297 ATTGCAATCGGTTCCGCAGC 62.270 55.000 5.99 10.17 35.47 5.25
2887 2931 1.013596 TATTGCAATCGGTTCCGCAG 58.986 50.000 16.86 0.33 35.47 5.18
2888 2932 1.674359 ATATTGCAATCGGTTCCGCA 58.326 45.000 16.86 0.00 0.00 5.69
2889 2933 4.419522 AATATATTGCAATCGGTTCCGC 57.580 40.909 16.86 0.00 0.00 5.54
2890 2934 5.996219 TGAAATATATTGCAATCGGTTCCG 58.004 37.500 16.86 4.74 0.00 4.30
2891 2935 6.857964 CACTGAAATATATTGCAATCGGTTCC 59.142 38.462 16.86 3.69 0.00 3.62
2892 2936 7.639039 TCACTGAAATATATTGCAATCGGTTC 58.361 34.615 16.86 14.89 0.00 3.62
2893 2937 7.566760 TCACTGAAATATATTGCAATCGGTT 57.433 32.000 16.86 6.25 0.00 4.44
2894 2938 7.750229 ATCACTGAAATATATTGCAATCGGT 57.250 32.000 16.86 9.66 0.00 4.69
3022 3066 9.556030 GGCACTTAGATTAAAACAAGTTATGAC 57.444 33.333 0.00 0.00 0.00 3.06
3023 3067 9.290988 TGGCACTTAGATTAAAACAAGTTATGA 57.709 29.630 0.00 0.00 0.00 2.15
3027 3071 9.908152 GTTATGGCACTTAGATTAAAACAAGTT 57.092 29.630 0.00 0.00 0.00 2.66
3028 3072 8.234546 CGTTATGGCACTTAGATTAAAACAAGT 58.765 33.333 0.00 0.00 0.00 3.16
3029 3073 8.234546 ACGTTATGGCACTTAGATTAAAACAAG 58.765 33.333 0.00 0.00 0.00 3.16
3030 3074 8.101654 ACGTTATGGCACTTAGATTAAAACAA 57.898 30.769 0.00 0.00 0.00 2.83
3031 3075 7.675962 ACGTTATGGCACTTAGATTAAAACA 57.324 32.000 0.00 0.00 0.00 2.83
3032 3076 9.481800 GTTACGTTATGGCACTTAGATTAAAAC 57.518 33.333 0.00 0.00 0.00 2.43
3033 3077 9.217278 TGTTACGTTATGGCACTTAGATTAAAA 57.783 29.630 0.00 0.00 0.00 1.52
3034 3078 8.774890 TGTTACGTTATGGCACTTAGATTAAA 57.225 30.769 0.00 0.00 0.00 1.52
3035 3079 8.774890 TTGTTACGTTATGGCACTTAGATTAA 57.225 30.769 0.00 0.00 0.00 1.40
3036 3080 8.774890 TTTGTTACGTTATGGCACTTAGATTA 57.225 30.769 0.00 0.00 0.00 1.75
3037 3081 7.675962 TTTGTTACGTTATGGCACTTAGATT 57.324 32.000 0.00 0.00 0.00 2.40
3038 3082 7.675962 TTTTGTTACGTTATGGCACTTAGAT 57.324 32.000 0.00 0.00 0.00 1.98
3039 3083 7.493743 TTTTTGTTACGTTATGGCACTTAGA 57.506 32.000 0.00 0.00 0.00 2.10
3040 3084 9.828852 TTATTTTTGTTACGTTATGGCACTTAG 57.171 29.630 0.00 0.00 0.00 2.18
3042 3086 9.699703 ATTTATTTTTGTTACGTTATGGCACTT 57.300 25.926 0.00 0.00 0.00 3.16
3043 3087 9.349145 GATTTATTTTTGTTACGTTATGGCACT 57.651 29.630 0.00 0.00 0.00 4.40
3044 3088 9.130312 TGATTTATTTTTGTTACGTTATGGCAC 57.870 29.630 0.00 0.00 0.00 5.01
3045 3089 9.862371 ATGATTTATTTTTGTTACGTTATGGCA 57.138 25.926 0.00 0.00 0.00 4.92
3058 3102 9.549509 CCACTCAAAATGCATGATTTATTTTTG 57.450 29.630 0.00 5.75 32.76 2.44
3059 3103 9.504708 TCCACTCAAAATGCATGATTTATTTTT 57.495 25.926 0.00 0.00 32.76 1.94
3060 3104 8.938906 GTCCACTCAAAATGCATGATTTATTTT 58.061 29.630 0.00 1.03 32.76 1.82
3061 3105 7.550196 GGTCCACTCAAAATGCATGATTTATTT 59.450 33.333 0.00 0.00 32.76 1.40
3062 3106 7.043565 GGTCCACTCAAAATGCATGATTTATT 58.956 34.615 0.00 0.00 32.76 1.40
3063 3107 6.381994 AGGTCCACTCAAAATGCATGATTTAT 59.618 34.615 0.00 0.00 32.76 1.40
3064 3108 5.716228 AGGTCCACTCAAAATGCATGATTTA 59.284 36.000 0.00 0.00 32.76 1.40
3065 3109 4.529377 AGGTCCACTCAAAATGCATGATTT 59.471 37.500 0.00 0.00 35.65 2.17
3066 3110 4.091549 AGGTCCACTCAAAATGCATGATT 58.908 39.130 0.00 0.00 0.00 2.57
3067 3111 3.705051 AGGTCCACTCAAAATGCATGAT 58.295 40.909 0.00 0.00 0.00 2.45
3068 3112 3.159213 AGGTCCACTCAAAATGCATGA 57.841 42.857 0.00 0.00 0.00 3.07
3069 3113 3.581755 CAAGGTCCACTCAAAATGCATG 58.418 45.455 0.00 0.00 0.00 4.06
3070 3114 2.564062 CCAAGGTCCACTCAAAATGCAT 59.436 45.455 0.00 0.00 0.00 3.96
3071 3115 1.962807 CCAAGGTCCACTCAAAATGCA 59.037 47.619 0.00 0.00 0.00 3.96
3072 3116 2.238521 TCCAAGGTCCACTCAAAATGC 58.761 47.619 0.00 0.00 0.00 3.56
3073 3117 4.081406 TCATCCAAGGTCCACTCAAAATG 58.919 43.478 0.00 0.00 0.00 2.32
3074 3118 4.338879 CTCATCCAAGGTCCACTCAAAAT 58.661 43.478 0.00 0.00 0.00 1.82
3075 3119 3.498481 CCTCATCCAAGGTCCACTCAAAA 60.498 47.826 0.00 0.00 0.00 2.44
3076 3120 2.040278 CCTCATCCAAGGTCCACTCAAA 59.960 50.000 0.00 0.00 0.00 2.69
3077 3121 1.630369 CCTCATCCAAGGTCCACTCAA 59.370 52.381 0.00 0.00 0.00 3.02
3078 3122 1.279496 CCTCATCCAAGGTCCACTCA 58.721 55.000 0.00 0.00 0.00 3.41
3086 3130 0.033796 ACATGCCACCTCATCCAAGG 60.034 55.000 0.00 0.00 42.55 3.61
3087 3131 1.100510 CACATGCCACCTCATCCAAG 58.899 55.000 0.00 0.00 0.00 3.61
3088 3132 0.405198 ACACATGCCACCTCATCCAA 59.595 50.000 0.00 0.00 0.00 3.53
3089 3133 0.322726 CACACATGCCACCTCATCCA 60.323 55.000 0.00 0.00 0.00 3.41
3090 3134 1.033746 CCACACATGCCACCTCATCC 61.034 60.000 0.00 0.00 0.00 3.51
3091 3135 0.322816 ACCACACATGCCACCTCATC 60.323 55.000 0.00 0.00 0.00 2.92
3092 3136 0.609957 CACCACACATGCCACCTCAT 60.610 55.000 0.00 0.00 0.00 2.90
3093 3137 1.228215 CACCACACATGCCACCTCA 60.228 57.895 0.00 0.00 0.00 3.86
3094 3138 0.957395 CTCACCACACATGCCACCTC 60.957 60.000 0.00 0.00 0.00 3.85
3095 3139 1.073722 CTCACCACACATGCCACCT 59.926 57.895 0.00 0.00 0.00 4.00
3096 3140 1.973281 CCTCACCACACATGCCACC 60.973 63.158 0.00 0.00 0.00 4.61
3097 3141 1.228245 ACCTCACCACACATGCCAC 60.228 57.895 0.00 0.00 0.00 5.01
3098 3142 1.228215 CACCTCACCACACATGCCA 60.228 57.895 0.00 0.00 0.00 4.92
3099 3143 0.537143 TTCACCTCACCACACATGCC 60.537 55.000 0.00 0.00 0.00 4.40
3100 3144 1.267806 CTTTCACCTCACCACACATGC 59.732 52.381 0.00 0.00 0.00 4.06
3101 3145 1.881973 CCTTTCACCTCACCACACATG 59.118 52.381 0.00 0.00 0.00 3.21
3102 3146 1.494721 ACCTTTCACCTCACCACACAT 59.505 47.619 0.00 0.00 0.00 3.21
3103 3147 0.916086 ACCTTTCACCTCACCACACA 59.084 50.000 0.00 0.00 0.00 3.72
3104 3148 1.308998 CACCTTTCACCTCACCACAC 58.691 55.000 0.00 0.00 0.00 3.82
3105 3149 0.916086 ACACCTTTCACCTCACCACA 59.084 50.000 0.00 0.00 0.00 4.17
3106 3150 1.308998 CACACCTTTCACCTCACCAC 58.691 55.000 0.00 0.00 0.00 4.16
3107 3151 0.465460 GCACACCTTTCACCTCACCA 60.465 55.000 0.00 0.00 0.00 4.17
3108 3152 0.465460 TGCACACCTTTCACCTCACC 60.465 55.000 0.00 0.00 0.00 4.02
3109 3153 1.267806 CATGCACACCTTTCACCTCAC 59.732 52.381 0.00 0.00 0.00 3.51
3110 3154 1.142667 TCATGCACACCTTTCACCTCA 59.857 47.619 0.00 0.00 0.00 3.86
3111 3155 1.808945 CTCATGCACACCTTTCACCTC 59.191 52.381 0.00 0.00 0.00 3.85
3112 3156 1.421268 TCTCATGCACACCTTTCACCT 59.579 47.619 0.00 0.00 0.00 4.00
3113 3157 1.896220 TCTCATGCACACCTTTCACC 58.104 50.000 0.00 0.00 0.00 4.02
3114 3158 3.076621 TGATCTCATGCACACCTTTCAC 58.923 45.455 0.00 0.00 0.00 3.18
3115 3159 3.421919 TGATCTCATGCACACCTTTCA 57.578 42.857 0.00 0.00 0.00 2.69
3116 3160 3.755378 AGTTGATCTCATGCACACCTTTC 59.245 43.478 0.00 0.00 0.00 2.62
3117 3161 3.759581 AGTTGATCTCATGCACACCTTT 58.240 40.909 0.00 0.00 0.00 3.11
3118 3162 3.430042 AGTTGATCTCATGCACACCTT 57.570 42.857 0.00 0.00 0.00 3.50
3119 3163 4.558226 TTAGTTGATCTCATGCACACCT 57.442 40.909 0.00 0.00 0.00 4.00
3120 3164 6.925610 TTATTAGTTGATCTCATGCACACC 57.074 37.500 0.00 0.00 0.00 4.16
3121 3165 7.227314 TCCATTATTAGTTGATCTCATGCACAC 59.773 37.037 0.00 0.00 0.00 3.82
3122 3166 7.281841 TCCATTATTAGTTGATCTCATGCACA 58.718 34.615 0.00 0.00 0.00 4.57
3123 3167 7.734924 TCCATTATTAGTTGATCTCATGCAC 57.265 36.000 0.00 0.00 0.00 4.57
3124 3168 8.750515 TTTCCATTATTAGTTGATCTCATGCA 57.249 30.769 0.00 0.00 0.00 3.96
3152 3196 4.218200 CCACCACTACATGCATGAGAAAAA 59.782 41.667 32.75 9.54 0.00 1.94
3153 3197 3.758023 CCACCACTACATGCATGAGAAAA 59.242 43.478 32.75 11.19 0.00 2.29
3154 3198 3.008923 TCCACCACTACATGCATGAGAAA 59.991 43.478 32.75 13.52 0.00 2.52
3155 3199 2.571202 TCCACCACTACATGCATGAGAA 59.429 45.455 32.75 15.89 0.00 2.87
3156 3200 2.093500 GTCCACCACTACATGCATGAGA 60.093 50.000 32.75 18.18 0.00 3.27
3157 3201 2.283298 GTCCACCACTACATGCATGAG 58.717 52.381 32.75 24.46 0.00 2.90
3158 3202 1.065491 GGTCCACCACTACATGCATGA 60.065 52.381 32.75 15.12 35.64 3.07
3159 3203 1.065199 AGGTCCACCACTACATGCATG 60.065 52.381 25.09 25.09 38.89 4.06
3160 3204 1.289160 AGGTCCACCACTACATGCAT 58.711 50.000 0.00 0.00 38.89 3.96
3161 3205 1.064003 AAGGTCCACCACTACATGCA 58.936 50.000 0.00 0.00 38.89 3.96
3162 3206 1.812571 CAAAGGTCCACCACTACATGC 59.187 52.381 0.00 0.00 38.89 4.06
3163 3207 3.417069 TCAAAGGTCCACCACTACATG 57.583 47.619 0.00 0.00 38.89 3.21
3164 3208 3.587061 TCATCAAAGGTCCACCACTACAT 59.413 43.478 0.00 0.00 38.89 2.29
3165 3209 2.976185 TCATCAAAGGTCCACCACTACA 59.024 45.455 0.00 0.00 38.89 2.74
3166 3210 3.600388 CTCATCAAAGGTCCACCACTAC 58.400 50.000 0.00 0.00 38.89 2.73
3167 3211 2.571653 CCTCATCAAAGGTCCACCACTA 59.428 50.000 0.00 0.00 38.89 2.74
3168 3212 1.352352 CCTCATCAAAGGTCCACCACT 59.648 52.381 0.00 0.00 38.89 4.00
3169 3213 1.826385 CCTCATCAAAGGTCCACCAC 58.174 55.000 0.00 0.00 38.89 4.16
3177 3221 1.475280 CACATGCCACCTCATCAAAGG 59.525 52.381 0.00 0.00 42.55 3.11
3178 3222 2.094906 CACACATGCCACCTCATCAAAG 60.095 50.000 0.00 0.00 0.00 2.77
3179 3223 1.887854 CACACATGCCACCTCATCAAA 59.112 47.619 0.00 0.00 0.00 2.69
3180 3224 1.536940 CACACATGCCACCTCATCAA 58.463 50.000 0.00 0.00 0.00 2.57
3181 3225 0.961857 GCACACATGCCACCTCATCA 60.962 55.000 0.00 0.00 46.97 3.07
3182 3226 1.805254 GCACACATGCCACCTCATC 59.195 57.895 0.00 0.00 46.97 2.92
3183 3227 4.007457 GCACACATGCCACCTCAT 57.993 55.556 0.00 0.00 46.97 2.90
3193 3237 8.978874 TCCTATTTATCTTAACATGCACACAT 57.021 30.769 0.00 0.00 36.79 3.21
3194 3238 8.978874 ATCCTATTTATCTTAACATGCACACA 57.021 30.769 0.00 0.00 0.00 3.72
3198 3242 9.725019 CCACTATCCTATTTATCTTAACATGCA 57.275 33.333 0.00 0.00 0.00 3.96
3199 3243 9.167311 CCCACTATCCTATTTATCTTAACATGC 57.833 37.037 0.00 0.00 0.00 4.06
3200 3244 9.672673 CCCCACTATCCTATTTATCTTAACATG 57.327 37.037 0.00 0.00 0.00 3.21
3201 3245 9.629649 TCCCCACTATCCTATTTATCTTAACAT 57.370 33.333 0.00 0.00 0.00 2.71
3202 3246 9.629649 ATCCCCACTATCCTATTTATCTTAACA 57.370 33.333 0.00 0.00 0.00 2.41
3204 3248 9.852784 TGATCCCCACTATCCTATTTATCTTAA 57.147 33.333 0.00 0.00 0.00 1.85
3205 3249 9.852784 TTGATCCCCACTATCCTATTTATCTTA 57.147 33.333 0.00 0.00 0.00 2.10
3206 3250 8.606830 GTTGATCCCCACTATCCTATTTATCTT 58.393 37.037 0.00 0.00 0.00 2.40
3207 3251 7.964293 AGTTGATCCCCACTATCCTATTTATCT 59.036 37.037 0.00 0.00 0.00 1.98
3208 3252 8.152023 AGTTGATCCCCACTATCCTATTTATC 57.848 38.462 0.00 0.00 0.00 1.75
3209 3253 8.525729 AAGTTGATCCCCACTATCCTATTTAT 57.474 34.615 0.00 0.00 0.00 1.40
3210 3254 7.794683 AGAAGTTGATCCCCACTATCCTATTTA 59.205 37.037 0.00 0.00 0.00 1.40
3211 3255 6.621514 AGAAGTTGATCCCCACTATCCTATTT 59.378 38.462 0.00 0.00 0.00 1.40
3212 3256 6.153924 AGAAGTTGATCCCCACTATCCTATT 58.846 40.000 0.00 0.00 0.00 1.73
3213 3257 5.731924 AGAAGTTGATCCCCACTATCCTAT 58.268 41.667 0.00 0.00 0.00 2.57
3214 3258 5.157770 AGAAGTTGATCCCCACTATCCTA 57.842 43.478 0.00 0.00 0.00 2.94
3215 3259 4.014273 AGAAGTTGATCCCCACTATCCT 57.986 45.455 0.00 0.00 0.00 3.24
3216 3260 4.779993 AAGAAGTTGATCCCCACTATCC 57.220 45.455 0.00 0.00 0.00 2.59
3217 3261 6.831976 ACATAAGAAGTTGATCCCCACTATC 58.168 40.000 0.00 0.00 0.00 2.08
3218 3262 6.831664 ACATAAGAAGTTGATCCCCACTAT 57.168 37.500 0.00 0.00 0.00 2.12
3219 3263 7.931015 ATACATAAGAAGTTGATCCCCACTA 57.069 36.000 0.00 0.00 0.00 2.74
3220 3264 6.831664 ATACATAAGAAGTTGATCCCCACT 57.168 37.500 0.00 0.00 0.00 4.00
3221 3265 9.877178 CTATATACATAAGAAGTTGATCCCCAC 57.123 37.037 0.00 0.00 0.00 4.61
3222 3266 9.046846 CCTATATACATAAGAAGTTGATCCCCA 57.953 37.037 0.00 0.00 0.00 4.96
3223 3267 9.268282 TCCTATATACATAAGAAGTTGATCCCC 57.732 37.037 0.00 0.00 0.00 4.81
3236 3280 9.541884 TGCACTAACCTCATCCTATATACATAA 57.458 33.333 0.00 0.00 0.00 1.90
3237 3281 9.541884 TTGCACTAACCTCATCCTATATACATA 57.458 33.333 0.00 0.00 0.00 2.29
3238 3282 8.435931 TTGCACTAACCTCATCCTATATACAT 57.564 34.615 0.00 0.00 0.00 2.29
3239 3283 7.849322 TTGCACTAACCTCATCCTATATACA 57.151 36.000 0.00 0.00 0.00 2.29
3240 3284 9.726438 AAATTGCACTAACCTCATCCTATATAC 57.274 33.333 0.00 0.00 0.00 1.47
3242 3286 9.646522 AAAAATTGCACTAACCTCATCCTATAT 57.353 29.630 0.00 0.00 0.00 0.86
3243 3287 8.902806 CAAAAATTGCACTAACCTCATCCTATA 58.097 33.333 0.00 0.00 0.00 1.31
3244 3288 7.397192 ACAAAAATTGCACTAACCTCATCCTAT 59.603 33.333 0.00 0.00 0.00 2.57
3245 3289 6.719370 ACAAAAATTGCACTAACCTCATCCTA 59.281 34.615 0.00 0.00 0.00 2.94
3246 3290 5.539955 ACAAAAATTGCACTAACCTCATCCT 59.460 36.000 0.00 0.00 0.00 3.24
3247 3291 5.783111 ACAAAAATTGCACTAACCTCATCC 58.217 37.500 0.00 0.00 0.00 3.51
3248 3292 8.863049 CATAACAAAAATTGCACTAACCTCATC 58.137 33.333 0.00 0.00 0.00 2.92
3249 3293 7.331687 GCATAACAAAAATTGCACTAACCTCAT 59.668 33.333 0.00 0.00 35.22 2.90
3250 3294 6.644592 GCATAACAAAAATTGCACTAACCTCA 59.355 34.615 0.00 0.00 35.22 3.86
3251 3295 6.183359 CGCATAACAAAAATTGCACTAACCTC 60.183 38.462 0.00 0.00 34.80 3.85
3252 3296 5.633182 CGCATAACAAAAATTGCACTAACCT 59.367 36.000 0.00 0.00 34.80 3.50
3253 3297 5.164002 CCGCATAACAAAAATTGCACTAACC 60.164 40.000 0.00 0.00 34.80 2.85
3254 3298 5.631512 TCCGCATAACAAAAATTGCACTAAC 59.368 36.000 0.00 0.00 34.80 2.34
3289 3333 1.689233 TAGGGATGCAGGCGGAAGT 60.689 57.895 0.00 0.00 0.00 3.01
3348 3392 1.405821 AGACACTAGCACGCACCTATC 59.594 52.381 0.00 0.00 0.00 2.08
3353 3397 2.194271 GGAATAGACACTAGCACGCAC 58.806 52.381 0.00 0.00 0.00 5.34
3354 3398 1.136305 GGGAATAGACACTAGCACGCA 59.864 52.381 0.00 0.00 0.00 5.24
3355 3399 1.409427 AGGGAATAGACACTAGCACGC 59.591 52.381 0.00 0.00 0.00 5.34
3356 3400 2.799917 GCAGGGAATAGACACTAGCACG 60.800 54.545 0.00 0.00 0.00 5.34
3373 3417 5.059404 ACAAAATAAATTCGACCAGCAGG 57.941 39.130 0.00 0.00 42.21 4.85
3377 3421 9.139174 AGCAATAAACAAAATAAATTCGACCAG 57.861 29.630 0.00 0.00 0.00 4.00
3382 3426 8.863049 AGCAGAGCAATAAACAAAATAAATTCG 58.137 29.630 0.00 0.00 0.00 3.34
3389 3433 9.546428 ACTTTTTAGCAGAGCAATAAACAAAAT 57.454 25.926 0.00 0.00 0.00 1.82
3469 3517 2.964464 AGCAGTGCATCTAGTAGCAGAT 59.036 45.455 19.20 2.64 42.14 2.90
3484 3533 7.945033 AAATTACACAAATGGTAAAGCAGTG 57.055 32.000 0.00 0.00 34.67 3.66
3523 3575 9.884636 TCATGTAAGTTAAATAGTAGTGCATGT 57.115 29.630 0.00 0.00 33.03 3.21
3595 3655 9.045745 TCAGGTTATGGCATGTTAGATCATATA 57.954 33.333 10.98 0.00 0.00 0.86
3601 3661 5.594317 GGTTTCAGGTTATGGCATGTTAGAT 59.406 40.000 10.98 0.00 0.00 1.98
3610 3670 4.438744 CGATTTCAGGTTTCAGGTTATGGC 60.439 45.833 0.00 0.00 0.00 4.40
3628 3688 8.561738 AATATAGGAACACTGTCAAACGATTT 57.438 30.769 0.00 0.00 0.00 2.17
3631 3691 7.442969 ACAAAATATAGGAACACTGTCAAACGA 59.557 33.333 0.00 0.00 0.00 3.85
3632 3692 7.581476 ACAAAATATAGGAACACTGTCAAACG 58.419 34.615 0.00 0.00 0.00 3.60
3756 3816 5.125417 GCTATGAAATTTACCTGGCTTGTCA 59.875 40.000 0.00 0.00 0.00 3.58
3775 3835 4.132336 ACATCCAGTTGCTATGTGCTATG 58.868 43.478 0.00 0.00 43.37 2.23
3821 3881 4.338118 TGTGTCAATTCCAAGGAAGTTGTC 59.662 41.667 7.69 9.72 37.56 3.18
3934 3994 8.479280 CAACTAAATGTGCAAACATAAACAGAC 58.521 33.333 0.00 0.00 0.00 3.51
3951 4011 7.721286 AGAACTGTGAAGAGTCAACTAAATG 57.279 36.000 0.00 0.00 34.87 2.32
4120 4180 7.756722 ATAACTCGGTTATAATATCCGTTTCGG 59.243 37.037 11.47 1.45 41.26 4.30
4121 4181 6.998258 AACTCGGTTATAATATCCGTTTCG 57.002 37.500 11.47 4.05 43.94 3.46
4122 4182 9.630098 TGATAACTCGGTTATAATATCCGTTTC 57.370 33.333 11.47 5.36 43.94 2.78
4123 4183 9.635520 CTGATAACTCGGTTATAATATCCGTTT 57.364 33.333 11.47 9.13 43.94 3.60
4124 4184 8.800332 ACTGATAACTCGGTTATAATATCCGTT 58.200 33.333 11.47 4.31 43.94 4.44
4125 4185 8.345724 ACTGATAACTCGGTTATAATATCCGT 57.654 34.615 11.47 3.82 43.94 4.69
4137 4197 1.001633 ACGCCAAACTGATAACTCGGT 59.998 47.619 0.00 0.00 43.02 4.69
4138 4198 1.722011 ACGCCAAACTGATAACTCGG 58.278 50.000 0.00 0.00 0.00 4.63
4156 4216 4.932200 TCAAAACAAACAACCCATGTGAAC 59.068 37.500 0.00 0.00 42.99 3.18
4178 4238 1.197721 CTGACGAAATGCCAACCTGTC 59.802 52.381 0.00 0.00 0.00 3.51
4297 4357 0.035056 ACCAGTAGCCATGCCAGAAC 60.035 55.000 0.00 0.00 0.00 3.01
4313 4373 6.296026 GTTACATGAGGGCATCTATAAACCA 58.704 40.000 0.00 0.00 30.68 3.67
4326 4386 1.421646 GATGAGGGGGTTACATGAGGG 59.578 57.143 0.00 0.00 0.00 4.30
4331 4391 1.762957 CGTCTGATGAGGGGGTTACAT 59.237 52.381 0.00 0.00 0.00 2.29
4333 4393 0.464452 CCGTCTGATGAGGGGGTTAC 59.536 60.000 0.00 0.00 42.71 2.50
4340 4400 4.115516 CACTGATTAACCGTCTGATGAGG 58.884 47.826 0.00 0.00 0.00 3.86
4345 4405 4.219725 TCATGTCACTGATTAACCGTCTGA 59.780 41.667 0.00 0.00 0.00 3.27
4350 4410 5.512788 GCAAATTCATGTCACTGATTAACCG 59.487 40.000 0.00 0.00 0.00 4.44
4357 4417 3.489355 ACCTGCAAATTCATGTCACTGA 58.511 40.909 0.00 0.00 0.00 3.41
4358 4418 3.928727 ACCTGCAAATTCATGTCACTG 57.071 42.857 0.00 0.00 0.00 3.66
4359 4419 5.948162 AGATAACCTGCAAATTCATGTCACT 59.052 36.000 0.00 0.00 0.00 3.41
4360 4420 6.199937 AGATAACCTGCAAATTCATGTCAC 57.800 37.500 0.00 0.00 0.00 3.67
4475 4535 2.335712 CGGCTTTCTTGGAGTGGGC 61.336 63.158 0.00 0.00 0.00 5.36
4491 4551 2.464459 GCAAGCCTGTCGGATTCGG 61.464 63.158 0.00 0.00 36.62 4.30
4508 4568 3.670055 GTGTTATGTTTGTCATGCTGTGC 59.330 43.478 0.00 0.00 37.91 4.57
4542 4602 1.207089 CCGGAGCATTCTACACCTCAA 59.793 52.381 0.00 0.00 0.00 3.02
4703 4769 0.814812 TTCACCGGGTTCCAAACGTC 60.815 55.000 6.32 0.00 0.00 4.34
4715 4781 0.957395 AGCTCTGCATGTTTCACCGG 60.957 55.000 0.00 0.00 0.00 5.28
4746 4812 5.862924 TTCAAACAAAGATCCTAAGCGAG 57.137 39.130 0.00 0.00 0.00 5.03
4768 4834 6.043938 TCTGTTTTGTTCCAACCCTAGACTAT 59.956 38.462 0.00 0.00 0.00 2.12
4779 4845 6.522625 TGACAAATCTCTGTTTTGTTCCAA 57.477 33.333 3.59 0.00 44.90 3.53
4795 4862 9.848710 AGATCAGTCAAATATCAGATGACAAAT 57.151 29.630 7.75 1.14 44.55 2.32
4796 4863 9.676861 AAGATCAGTCAAATATCAGATGACAAA 57.323 29.630 7.75 0.00 44.55 2.83
4840 4907 3.482436 AGCGAACCAATCACCAACTAAA 58.518 40.909 0.00 0.00 0.00 1.85
4874 4941 5.048013 GTCTGAACCCAAAAACCTAATCCAG 60.048 44.000 0.00 0.00 0.00 3.86
4877 4944 5.386958 GGTCTGAACCCAAAAACCTAATC 57.613 43.478 0.00 0.00 39.93 1.75
4903 6443 3.182967 GGACTTTCGATCTGCAGTACTG 58.817 50.000 18.93 18.93 0.00 2.74
4916 6456 3.674423 GAATGAGCGATTTGGACTTTCG 58.326 45.455 0.00 0.00 36.02 3.46
4917 6457 3.125316 ACGAATGAGCGATTTGGACTTTC 59.875 43.478 0.00 0.00 34.83 2.62
4920 6460 2.002586 CACGAATGAGCGATTTGGACT 58.997 47.619 0.00 0.00 34.83 3.85
4921 6461 1.062587 CCACGAATGAGCGATTTGGAC 59.937 52.381 0.00 0.00 34.83 4.02
4922 6462 1.368641 CCACGAATGAGCGATTTGGA 58.631 50.000 0.00 0.00 34.83 3.53
4923 6463 0.378257 CCCACGAATGAGCGATTTGG 59.622 55.000 0.00 0.00 34.83 3.28
4924 6464 1.062587 GTCCCACGAATGAGCGATTTG 59.937 52.381 0.00 0.00 34.83 2.32
4925 6465 1.369625 GTCCCACGAATGAGCGATTT 58.630 50.000 0.00 0.00 34.83 2.17
4948 6501 1.750399 CCAAATCGGTCCCTGCCAG 60.750 63.158 0.00 0.00 0.00 4.85
4949 6502 2.354729 CCAAATCGGTCCCTGCCA 59.645 61.111 0.00 0.00 0.00 4.92
4974 6528 2.856720 GCGAGCTAGAGAAATCAGGACG 60.857 54.545 0.00 0.00 0.00 4.79
5010 6565 3.494336 CTTCGCTGCAGGCCTTCG 61.494 66.667 17.12 10.15 37.74 3.79
5074 6666 2.413142 GGATGCAGCAACAGAGGCC 61.413 63.158 3.51 0.00 0.00 5.19
5140 6732 2.518587 TCGTCGGGCAGATCGGAT 60.519 61.111 0.00 0.00 0.00 4.18
5284 6876 2.756283 AAGTCGCGGGAGAGGAGG 60.756 66.667 6.13 0.00 0.00 4.30
5325 6917 1.045911 CGAAGAGGAGGAGGGGAAGG 61.046 65.000 0.00 0.00 0.00 3.46
5326 6918 1.681486 GCGAAGAGGAGGAGGGGAAG 61.681 65.000 0.00 0.00 0.00 3.46
5327 6919 1.686110 GCGAAGAGGAGGAGGGGAA 60.686 63.158 0.00 0.00 0.00 3.97
5328 6920 2.042843 GCGAAGAGGAGGAGGGGA 60.043 66.667 0.00 0.00 0.00 4.81
5329 6921 2.364317 TGCGAAGAGGAGGAGGGG 60.364 66.667 0.00 0.00 0.00 4.79
5330 6922 3.087666 GCTGCGAAGAGGAGGAGGG 62.088 68.421 0.00 0.00 38.88 4.30
5331 6923 2.354401 TGCTGCGAAGAGGAGGAGG 61.354 63.158 0.00 0.00 38.88 4.30
5332 6924 3.292656 TGCTGCGAAGAGGAGGAG 58.707 61.111 0.00 0.00 38.88 3.69
5388 6980 2.114411 TGGCAGGGACGGAAAACC 59.886 61.111 0.00 0.00 0.00 3.27
5439 7031 3.038417 GCACAAGTCACGCGCTCT 61.038 61.111 5.73 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.