Multiple sequence alignment - TraesCS3B01G369900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G369900 chr3B 100.000 7104 0 0 1 7104 581956211 581963314 0.000000e+00 13119.0
1 TraesCS3B01G369900 chr3B 86.465 2741 239 52 2403 5077 581961287 581958613 0.000000e+00 2885.0
2 TraesCS3B01G369900 chr3B 96.774 93 3 0 170 262 581956469 581956377 9.540000e-34 156.0
3 TraesCS3B01G369900 chr3B 92.222 90 6 1 58 147 749683512 749683600 7.480000e-25 126.0
4 TraesCS3B01G369900 chr3D 94.769 6366 197 26 848 7104 444051443 444057781 0.000000e+00 9786.0
5 TraesCS3B01G369900 chr3D 87.659 2747 223 40 2403 5077 444055714 444053012 0.000000e+00 3088.0
6 TraesCS3B01G369900 chr3D 83.473 357 52 7 6121 6475 444057356 444057707 6.870000e-85 326.0
7 TraesCS3B01G369900 chr3D 93.043 115 6 2 5076 5188 145414245 145414359 4.410000e-37 167.0
8 TraesCS3B01G369900 chr3D 96.364 55 2 0 6514 6568 444056677 444056623 2.730000e-14 91.6
9 TraesCS3B01G369900 chr3A 89.258 2923 206 54 847 3715 585014291 585017159 0.000000e+00 3559.0
10 TraesCS3B01G369900 chr3A 89.110 1506 117 22 2253 3723 585018804 585017311 0.000000e+00 1829.0
11 TraesCS3B01G369900 chr3A 90.271 1439 74 19 5087 6500 585018707 585020104 0.000000e+00 1821.0
12 TraesCS3B01G369900 chr3A 89.542 1377 99 13 3740 5077 585017287 585018657 0.000000e+00 1703.0
13 TraesCS3B01G369900 chr3A 87.566 1327 129 23 3772 5077 585017161 585015850 0.000000e+00 1504.0
14 TraesCS3B01G369900 chr3A 89.607 433 29 7 6686 7104 585020442 585020872 2.920000e-148 536.0
15 TraesCS3B01G369900 chr3A 86.760 287 34 4 3363 3647 686903474 686903190 4.140000e-82 316.0
16 TraesCS3B01G369900 chr3A 87.283 173 16 4 6514 6686 585020337 585020171 7.270000e-45 193.0
17 TraesCS3B01G369900 chrUn 89.349 1521 86 26 2253 3723 233534286 233535780 0.000000e+00 1842.0
18 TraesCS3B01G369900 chrUn 90.044 1376 73 16 3740 5077 233535807 233534458 0.000000e+00 1724.0
19 TraesCS3B01G369900 chrUn 89.782 1282 67 16 3740 4983 189384335 189383080 0.000000e+00 1583.0
20 TraesCS3B01G369900 chrUn 89.721 1255 75 22 2497 3723 189383080 189384308 0.000000e+00 1554.0
21 TraesCS3B01G369900 chrUn 89.294 822 43 13 2253 3029 388536114 388536935 0.000000e+00 989.0
22 TraesCS3B01G369900 chrUn 92.769 650 26 6 4449 5077 388536935 388536286 0.000000e+00 920.0
23 TraesCS3B01G369900 chrUn 92.553 564 21 6 4533 5075 221554533 221553970 0.000000e+00 789.0
24 TraesCS3B01G369900 chrUn 92.376 564 22 6 4533 5075 229488141 229487578 0.000000e+00 784.0
25 TraesCS3B01G369900 chrUn 91.921 557 24 9 2405 2940 221553970 221554526 0.000000e+00 760.0
26 TraesCS3B01G369900 chrUn 95.238 105 5 0 5087 5191 233534383 233534279 4.410000e-37 167.0
27 TraesCS3B01G369900 chrUn 95.238 105 5 0 5087 5191 388536211 388536107 4.410000e-37 167.0
28 TraesCS3B01G369900 chr5A 89.152 1521 89 27 2253 3723 492872825 492871331 0.000000e+00 1825.0
29 TraesCS3B01G369900 chr5A 90.116 1376 72 17 3740 5077 492871304 492872653 0.000000e+00 1729.0
30 TraesCS3B01G369900 chr5A 88.546 908 54 15 2251 3113 522358248 522359150 0.000000e+00 1055.0
31 TraesCS3B01G369900 chr5A 91.228 741 39 8 4358 5077 522359157 522358422 0.000000e+00 985.0
32 TraesCS3B01G369900 chr4A 88.999 1518 92 25 2253 3721 246691736 246690245 0.000000e+00 1808.0
33 TraesCS3B01G369900 chr4A 90.109 1375 73 15 3740 5077 246690216 246691564 0.000000e+00 1727.0
34 TraesCS3B01G369900 chr4D 88.947 1520 93 24 2253 3723 123679578 123678085 0.000000e+00 1807.0
35 TraesCS3B01G369900 chr4D 89.978 1377 72 18 3740 5077 123678058 123679407 0.000000e+00 1718.0
36 TraesCS3B01G369900 chr7B 91.517 613 29 3 2253 2842 531987854 531987242 0.000000e+00 822.0
37 TraesCS3B01G369900 chr7B 93.043 115 6 2 5076 5188 531987744 531987858 4.410000e-37 167.0
38 TraesCS3B01G369900 chr7B 89.109 101 8 3 58 155 117797436 117797336 9.680000e-24 122.0
39 TraesCS3B01G369900 chr7B 88.776 98 11 0 49 146 528017288 528017191 3.480000e-23 121.0
40 TraesCS3B01G369900 chr7B 85.526 76 11 0 570 645 371022427 371022352 5.910000e-11 80.5
41 TraesCS3B01G369900 chr7A 90.476 399 16 2 2253 2629 4936933 4937331 2.290000e-139 507.0
42 TraesCS3B01G369900 chr7A 80.488 164 30 2 557 718 394959165 394959002 2.690000e-24 124.0
43 TraesCS3B01G369900 chr7D 88.525 305 13 2 2253 2535 382107346 382107650 4.080000e-92 350.0
44 TraesCS3B01G369900 chr7D 88.525 305 13 4 2253 2535 626734230 626734534 4.080000e-92 350.0
45 TraesCS3B01G369900 chr7D 93.919 148 8 1 2253 2399 606915769 606915916 9.280000e-54 222.0
46 TraesCS3B01G369900 chr7D 95.238 105 5 0 5087 5191 382107443 382107339 4.410000e-37 167.0
47 TraesCS3B01G369900 chr7D 95.238 105 5 0 5087 5191 606915866 606915762 4.410000e-37 167.0
48 TraesCS3B01G369900 chr7D 95.238 105 5 0 5087 5191 626734327 626734223 4.410000e-37 167.0
49 TraesCS3B01G369900 chr1A 92.437 119 6 3 5076 5191 94623809 94623927 4.410000e-37 167.0
50 TraesCS3B01G369900 chr5B 93.333 90 6 0 58 147 442754471 442754382 4.470000e-27 134.0
51 TraesCS3B01G369900 chr2A 90.722 97 8 1 58 153 744984797 744984893 2.080000e-25 128.0
52 TraesCS3B01G369900 chr6B 93.023 86 6 0 58 143 400361861 400361946 7.480000e-25 126.0
53 TraesCS3B01G369900 chr6B 92.308 39 3 0 774 812 599755392 599755430 1.000000e-03 56.5
54 TraesCS3B01G369900 chr4B 93.023 86 6 0 58 143 538057138 538057223 7.480000e-25 126.0
55 TraesCS3B01G369900 chr2B 93.023 86 6 0 58 143 559498111 559498196 7.480000e-25 126.0
56 TraesCS3B01G369900 chr1B 91.209 91 8 0 57 147 19030070 19029980 2.690000e-24 124.0
57 TraesCS3B01G369900 chr6D 93.023 43 3 0 775 817 400698559 400698601 5.950000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G369900 chr3B 581956211 581963314 7103 False 13119.000000 13119 100.000000 1 7104 1 chr3B.!!$F1 7103
1 TraesCS3B01G369900 chr3B 581956377 581961287 4910 True 1520.500000 2885 91.619500 170 5077 2 chr3B.!!$R1 4907
2 TraesCS3B01G369900 chr3D 444051443 444057781 6338 False 5056.000000 9786 89.121000 848 7104 2 chr3D.!!$F2 6256
3 TraesCS3B01G369900 chr3D 444053012 444056677 3665 True 1589.800000 3088 92.011500 2403 6568 2 chr3D.!!$R1 4165
4 TraesCS3B01G369900 chr3A 585014291 585020872 6581 False 1904.750000 3559 89.669500 847 7104 4 chr3A.!!$F1 6257
5 TraesCS3B01G369900 chr3A 585015850 585020337 4487 True 1175.333333 1829 87.986333 2253 6686 3 chr3A.!!$R2 4433
6 TraesCS3B01G369900 chrUn 233534286 233535780 1494 False 1842.000000 1842 89.349000 2253 3723 1 chrUn.!!$F3 1470
7 TraesCS3B01G369900 chrUn 189383080 189384335 1255 True 1583.000000 1583 89.782000 3740 4983 1 chrUn.!!$R1 1243
8 TraesCS3B01G369900 chrUn 189383080 189384308 1228 False 1554.000000 1554 89.721000 2497 3723 1 chrUn.!!$F1 1226
9 TraesCS3B01G369900 chrUn 388536114 388536935 821 False 989.000000 989 89.294000 2253 3029 1 chrUn.!!$F4 776
10 TraesCS3B01G369900 chrUn 233534279 233535807 1528 True 945.500000 1724 92.641000 3740 5191 2 chrUn.!!$R4 1451
11 TraesCS3B01G369900 chrUn 221553970 221554533 563 True 789.000000 789 92.553000 4533 5075 1 chrUn.!!$R2 542
12 TraesCS3B01G369900 chrUn 229487578 229488141 563 True 784.000000 784 92.376000 4533 5075 1 chrUn.!!$R3 542
13 TraesCS3B01G369900 chrUn 221553970 221554526 556 False 760.000000 760 91.921000 2405 2940 1 chrUn.!!$F2 535
14 TraesCS3B01G369900 chrUn 388536107 388536935 828 True 543.500000 920 94.003500 4449 5191 2 chrUn.!!$R5 742
15 TraesCS3B01G369900 chr5A 492871331 492872825 1494 True 1825.000000 1825 89.152000 2253 3723 1 chr5A.!!$R1 1470
16 TraesCS3B01G369900 chr5A 492871304 492872653 1349 False 1729.000000 1729 90.116000 3740 5077 1 chr5A.!!$F1 1337
17 TraesCS3B01G369900 chr5A 522358248 522359150 902 False 1055.000000 1055 88.546000 2251 3113 1 chr5A.!!$F2 862
18 TraesCS3B01G369900 chr5A 522358422 522359157 735 True 985.000000 985 91.228000 4358 5077 1 chr5A.!!$R2 719
19 TraesCS3B01G369900 chr4A 246690245 246691736 1491 True 1808.000000 1808 88.999000 2253 3721 1 chr4A.!!$R1 1468
20 TraesCS3B01G369900 chr4A 246690216 246691564 1348 False 1727.000000 1727 90.109000 3740 5077 1 chr4A.!!$F1 1337
21 TraesCS3B01G369900 chr4D 123678085 123679578 1493 True 1807.000000 1807 88.947000 2253 3723 1 chr4D.!!$R1 1470
22 TraesCS3B01G369900 chr4D 123678058 123679407 1349 False 1718.000000 1718 89.978000 3740 5077 1 chr4D.!!$F1 1337
23 TraesCS3B01G369900 chr7B 531987242 531987854 612 True 822.000000 822 91.517000 2253 2842 1 chr7B.!!$R4 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 532 0.033796 AGGTGATGCCCCTGACATTG 60.034 55.0 0.00 0.00 38.26 2.82 F
908 910 0.528033 CAGTCCATCAGAGCAGCTCG 60.528 60.0 16.99 11.77 35.36 5.03 F
1530 1535 0.179020 CCAGGTGTGAGGAAGTTGCA 60.179 55.0 0.00 0.00 0.00 4.08 F
1746 1751 0.541764 TTGATTTGGGCAGGTGGGTC 60.542 55.0 0.00 0.00 0.00 4.46 F
2332 2337 2.235898 GCTCTGTTCAGAGACCAAGGAT 59.764 50.0 27.38 0.00 38.13 3.24 F
4147 4425 0.042131 TCTATGAACCGGTCCTGGGT 59.958 55.0 8.04 0.00 40.20 4.51 F
4475 4767 0.692419 TTGTGGGGTGGCCAAAACAT 60.692 50.0 7.24 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 1535 1.070134 TCAAACACGCTCTTGGCTAGT 59.930 47.619 0.00 0.0 39.13 2.57 R
2280 2285 2.110753 TGGGGGAATCGATGGATGTA 57.889 50.000 0.00 0.0 31.83 2.29 R
3328 3389 0.176680 CAATGACTCGGTCCTGGGAG 59.823 60.000 0.00 0.0 36.36 4.30 R
3451 3512 0.337082 TGGGAGGGTAGGACGAATCA 59.663 55.000 0.00 0.0 0.00 2.57 R
4233 4517 0.441145 ATTGGAACTACGTTTCGCGC 59.559 50.000 0.00 0.0 46.11 6.86 R
5058 5396 1.205655 CTGTACAGAGCAGCAGCCTAA 59.794 52.381 18.45 0.0 43.56 2.69 R
6281 7725 2.014128 ACAAACGACAGGACAAACCAG 58.986 47.619 0.00 0.0 42.04 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.753921 AGTATCTTTAGAGCAACCGTAATGC 59.246 40.000 0.00 0.00 44.15 3.56
28 29 3.932822 TCTTTAGAGCAACCGTAATGCA 58.067 40.909 7.01 0.00 46.22 3.96
31 32 4.678509 TTAGAGCAACCGTAATGCAAAG 57.321 40.909 0.00 0.00 46.22 2.77
32 33 2.778299 AGAGCAACCGTAATGCAAAGA 58.222 42.857 0.00 0.00 46.22 2.52
33 34 3.146066 AGAGCAACCGTAATGCAAAGAA 58.854 40.909 0.00 0.00 46.22 2.52
34 35 3.568007 AGAGCAACCGTAATGCAAAGAAA 59.432 39.130 0.00 0.00 46.22 2.52
35 36 4.037446 AGAGCAACCGTAATGCAAAGAAAA 59.963 37.500 0.00 0.00 46.22 2.29
39 40 5.723237 CAACCGTAATGCAAAGAAAAACAC 58.277 37.500 0.00 0.00 0.00 3.32
42 43 5.518487 ACCGTAATGCAAAGAAAAACACAAG 59.482 36.000 0.00 0.00 0.00 3.16
43 44 5.051106 CCGTAATGCAAAGAAAAACACAAGG 60.051 40.000 0.00 0.00 0.00 3.61
45 46 6.035542 CGTAATGCAAAGAAAAACACAAGGTT 59.964 34.615 0.00 0.00 42.98 3.50
47 48 9.040939 GTAATGCAAAGAAAAACACAAGGTTAT 57.959 29.630 0.00 0.00 39.29 1.89
51 52 9.039870 TGCAAAGAAAAACACAAGGTTATATTG 57.960 29.630 0.00 0.00 39.29 1.90
52 53 8.009409 GCAAAGAAAAACACAAGGTTATATTGC 58.991 33.333 0.00 0.00 39.29 3.56
53 54 9.039870 CAAAGAAAAACACAAGGTTATATTGCA 57.960 29.630 0.00 0.00 39.29 4.08
54 55 9.606631 AAAGAAAAACACAAGGTTATATTGCAA 57.393 25.926 0.00 0.00 39.29 4.08
55 56 8.816640 AGAAAAACACAAGGTTATATTGCAAG 57.183 30.769 4.94 0.00 39.29 4.01
56 57 8.421002 AGAAAAACACAAGGTTATATTGCAAGT 58.579 29.630 4.94 0.00 39.29 3.16
57 58 8.956533 AAAAACACAAGGTTATATTGCAAGTT 57.043 26.923 4.94 0.00 39.29 2.66
63 64 6.602009 ACAAGGTTATATTGCAAGTTACTCCC 59.398 38.462 4.94 0.00 0.00 4.30
64 65 6.576778 AGGTTATATTGCAAGTTACTCCCT 57.423 37.500 4.94 1.29 0.00 4.20
66 67 7.054751 AGGTTATATTGCAAGTTACTCCCTTC 58.945 38.462 4.94 0.00 0.00 3.46
67 68 6.018180 GGTTATATTGCAAGTTACTCCCTTCG 60.018 42.308 4.94 0.00 0.00 3.79
70 71 2.762745 TGCAAGTTACTCCCTTCGTTC 58.237 47.619 0.00 0.00 0.00 3.95
71 72 2.074576 GCAAGTTACTCCCTTCGTTCC 58.925 52.381 0.00 0.00 0.00 3.62
73 74 3.735591 CAAGTTACTCCCTTCGTTCCAA 58.264 45.455 0.00 0.00 0.00 3.53
74 75 4.131596 CAAGTTACTCCCTTCGTTCCAAA 58.868 43.478 0.00 0.00 0.00 3.28
75 76 4.426736 AGTTACTCCCTTCGTTCCAAAA 57.573 40.909 0.00 0.00 0.00 2.44
77 78 6.117975 AGTTACTCCCTTCGTTCCAAAATA 57.882 37.500 0.00 0.00 0.00 1.40
78 79 6.171213 AGTTACTCCCTTCGTTCCAAAATAG 58.829 40.000 0.00 0.00 0.00 1.73
84 85 8.053355 ACTCCCTTCGTTCCAAAATAGATTATT 58.947 33.333 0.00 0.00 0.00 1.40
85 86 8.446599 TCCCTTCGTTCCAAAATAGATTATTC 57.553 34.615 0.00 0.00 0.00 1.75
86 87 8.050325 TCCCTTCGTTCCAAAATAGATTATTCA 58.950 33.333 0.00 0.00 0.00 2.57
87 88 8.682710 CCCTTCGTTCCAAAATAGATTATTCAA 58.317 33.333 0.00 0.00 0.00 2.69
88 89 9.503427 CCTTCGTTCCAAAATAGATTATTCAAC 57.497 33.333 0.00 0.00 0.00 3.18
134 135 6.942976 AGTTGGGTCATCTATTTTAGAACGA 58.057 36.000 0.00 0.00 38.50 3.85
136 137 7.549488 AGTTGGGTCATCTATTTTAGAACGAAG 59.451 37.037 0.00 0.00 38.50 3.79
137 138 6.346096 TGGGTCATCTATTTTAGAACGAAGG 58.654 40.000 0.00 0.00 38.50 3.46
138 139 5.758784 GGGTCATCTATTTTAGAACGAAGGG 59.241 44.000 0.00 0.00 38.50 3.95
139 140 6.407752 GGGTCATCTATTTTAGAACGAAGGGA 60.408 42.308 0.00 0.00 38.50 4.20
140 141 6.702282 GGTCATCTATTTTAGAACGAAGGGAG 59.298 42.308 0.00 0.00 38.50 4.30
143 144 8.411683 TCATCTATTTTAGAACGAAGGGAGTAC 58.588 37.037 0.00 0.00 38.50 2.73
146 147 8.810041 TCTATTTTAGAACGAAGGGAGTACTTT 58.190 33.333 0.00 0.00 0.00 2.66
147 148 7.668525 ATTTTAGAACGAAGGGAGTACTTTG 57.331 36.000 0.00 0.00 37.77 2.77
149 150 6.899393 TTAGAACGAAGGGAGTACTTTGTA 57.101 37.500 0.00 0.00 42.74 2.41
152 153 7.472334 AGAACGAAGGGAGTACTTTGTATTA 57.528 36.000 0.00 0.00 42.74 0.98
153 154 7.318893 AGAACGAAGGGAGTACTTTGTATTAC 58.681 38.462 0.00 0.00 42.74 1.89
154 155 6.594788 ACGAAGGGAGTACTTTGTATTACA 57.405 37.500 0.00 0.00 41.97 2.41
156 157 7.095270 ACGAAGGGAGTACTTTGTATTACAAG 58.905 38.462 9.10 6.84 41.97 3.16
157 158 7.095270 CGAAGGGAGTACTTTGTATTACAAGT 58.905 38.462 9.10 11.35 39.53 3.16
158 159 7.063074 CGAAGGGAGTACTTTGTATTACAAGTG 59.937 40.741 9.10 9.00 39.53 3.16
159 160 6.171213 AGGGAGTACTTTGTATTACAAGTGC 58.829 40.000 9.10 11.98 39.53 4.40
160 161 5.935789 GGGAGTACTTTGTATTACAAGTGCA 59.064 40.000 19.04 0.00 39.53 4.57
161 162 6.428771 GGGAGTACTTTGTATTACAAGTGCAA 59.571 38.462 19.04 4.75 39.53 4.08
162 163 7.295930 GGAGTACTTTGTATTACAAGTGCAAC 58.704 38.462 19.04 13.67 39.53 4.17
166 167 6.062095 ACTTTGTATTACAAGTGCAACCTCT 58.938 36.000 9.10 0.00 39.53 3.69
167 168 6.546034 ACTTTGTATTACAAGTGCAACCTCTT 59.454 34.615 9.10 0.00 39.53 2.85
170 171 6.058833 TGTATTACAAGTGCAACCTCTTCAA 58.941 36.000 0.00 0.00 37.80 2.69
174 175 5.343307 ACAAGTGCAACCTCTTCAAAAAT 57.657 34.783 0.00 0.00 37.80 1.82
175 176 5.733676 ACAAGTGCAACCTCTTCAAAAATT 58.266 33.333 0.00 0.00 37.80 1.82
176 177 5.581874 ACAAGTGCAACCTCTTCAAAAATTG 59.418 36.000 0.00 0.00 37.80 2.32
177 178 5.343307 AGTGCAACCTCTTCAAAAATTGT 57.657 34.783 0.00 0.00 37.80 2.71
178 179 6.463995 AGTGCAACCTCTTCAAAAATTGTA 57.536 33.333 0.00 0.00 37.80 2.41
180 181 7.500141 AGTGCAACCTCTTCAAAAATTGTATT 58.500 30.769 0.00 0.00 37.80 1.89
181 182 8.637986 AGTGCAACCTCTTCAAAAATTGTATTA 58.362 29.630 0.00 0.00 37.80 0.98
280 281 9.938670 TTTTTAAAATCGGTGTATAATCGATGG 57.061 29.630 0.00 0.00 41.91 3.51
281 282 8.890124 TTTAAAATCGGTGTATAATCGATGGA 57.110 30.769 0.00 0.00 41.91 3.41
282 283 9.496873 TTTAAAATCGGTGTATAATCGATGGAT 57.503 29.630 0.00 0.00 41.91 3.41
285 286 5.310720 TCGGTGTATAATCGATGGATGAG 57.689 43.478 0.00 0.00 31.83 2.90
286 287 3.859961 CGGTGTATAATCGATGGATGAGC 59.140 47.826 0.00 0.00 31.83 4.26
287 288 4.380973 CGGTGTATAATCGATGGATGAGCT 60.381 45.833 0.00 0.00 31.83 4.09
291 292 8.580720 GGTGTATAATCGATGGATGAGCTATAT 58.419 37.037 0.00 0.00 31.83 0.86
301 302 7.062722 CGATGGATGAGCTATATACAACTGTTG 59.937 40.741 18.44 18.44 0.00 3.33
302 303 7.360113 TGGATGAGCTATATACAACTGTTGA 57.640 36.000 26.00 10.74 0.00 3.18
309 310 8.581057 AGCTATATACAACTGTTGAAATCGAG 57.419 34.615 26.00 17.15 0.00 4.04
310 311 8.198109 AGCTATATACAACTGTTGAAATCGAGT 58.802 33.333 26.00 4.54 0.00 4.18
311 312 8.480853 GCTATATACAACTGTTGAAATCGAGTC 58.519 37.037 26.00 11.19 0.00 3.36
313 314 8.948631 ATATACAACTGTTGAAATCGAGTCAT 57.051 30.769 26.00 6.54 0.00 3.06
314 315 7.672983 ATACAACTGTTGAAATCGAGTCATT 57.327 32.000 26.00 2.44 0.00 2.57
315 316 8.771920 ATACAACTGTTGAAATCGAGTCATTA 57.228 30.769 26.00 4.57 0.00 1.90
316 317 7.121974 ACAACTGTTGAAATCGAGTCATTAG 57.878 36.000 26.00 6.82 0.00 1.73
319 320 5.120830 ACTGTTGAAATCGAGTCATTAGTGC 59.879 40.000 13.29 0.00 0.00 4.40
320 321 4.994217 TGTTGAAATCGAGTCATTAGTGCA 59.006 37.500 2.68 0.00 0.00 4.57
321 322 5.643348 TGTTGAAATCGAGTCATTAGTGCAT 59.357 36.000 2.68 0.00 0.00 3.96
322 323 6.149308 TGTTGAAATCGAGTCATTAGTGCATT 59.851 34.615 2.68 0.00 0.00 3.56
323 324 6.741992 TGAAATCGAGTCATTAGTGCATTT 57.258 33.333 0.00 0.00 0.00 2.32
325 326 7.684670 TGAAATCGAGTCATTAGTGCATTTAC 58.315 34.615 0.00 0.00 0.00 2.01
326 327 7.333174 TGAAATCGAGTCATTAGTGCATTTACA 59.667 33.333 0.00 0.00 0.00 2.41
328 329 5.720202 TCGAGTCATTAGTGCATTTACAGT 58.280 37.500 0.00 0.00 0.00 3.55
329 330 5.576774 TCGAGTCATTAGTGCATTTACAGTG 59.423 40.000 0.00 0.00 0.00 3.66
332 333 7.201556 CGAGTCATTAGTGCATTTACAGTGATT 60.202 37.037 0.00 0.00 0.00 2.57
334 335 7.607607 AGTCATTAGTGCATTTACAGTGATTGA 59.392 33.333 0.00 0.00 0.00 2.57
336 337 9.612066 TCATTAGTGCATTTACAGTGATTGATA 57.388 29.630 0.00 0.00 0.00 2.15
339 340 9.665719 TTAGTGCATTTACAGTGATTGATAAGA 57.334 29.630 0.00 0.00 0.00 2.10
342 343 8.615211 GTGCATTTACAGTGATTGATAAGATCA 58.385 33.333 0.00 0.00 37.55 2.92
379 380 7.345691 TCCCATCACATAATTTAGAGAAAGCA 58.654 34.615 0.00 0.00 0.00 3.91
380 381 7.833682 TCCCATCACATAATTTAGAGAAAGCAA 59.166 33.333 0.00 0.00 0.00 3.91
414 415 8.663209 ATGTATAATGGATGAGCTCTTAGTCT 57.337 34.615 16.19 0.00 0.00 3.24
422 423 7.750655 TGGATGAGCTCTTAGTCTTATCTCTA 58.249 38.462 16.19 0.00 0.00 2.43
423 424 7.663905 TGGATGAGCTCTTAGTCTTATCTCTAC 59.336 40.741 16.19 0.00 0.00 2.59
424 425 7.883311 GGATGAGCTCTTAGTCTTATCTCTACT 59.117 40.741 16.19 0.00 0.00 2.57
425 426 9.938280 GATGAGCTCTTAGTCTTATCTCTACTA 57.062 37.037 16.19 0.00 0.00 1.82
427 428 9.550406 TGAGCTCTTAGTCTTATCTCTACTAAC 57.450 37.037 16.19 0.00 33.39 2.34
428 429 8.913487 AGCTCTTAGTCTTATCTCTACTAACC 57.087 38.462 0.00 0.00 33.39 2.85
430 431 8.780249 GCTCTTAGTCTTATCTCTACTAACCAG 58.220 40.741 0.00 0.00 33.39 4.00
471 472 9.840427 ACGATGAGACAAATAATGTTAAAAAGG 57.160 29.630 0.00 0.00 44.12 3.11
472 473 8.798153 CGATGAGACAAATAATGTTAAAAAGGC 58.202 33.333 0.00 0.00 44.12 4.35
473 474 9.638239 GATGAGACAAATAATGTTAAAAAGGCA 57.362 29.630 0.00 0.00 44.12 4.75
474 475 9.643693 ATGAGACAAATAATGTTAAAAAGGCAG 57.356 29.630 0.00 0.00 44.12 4.85
475 476 8.087750 TGAGACAAATAATGTTAAAAAGGCAGG 58.912 33.333 0.00 0.00 44.12 4.85
480 481 7.614124 AATAATGTTAAAAAGGCAGGCATTG 57.386 32.000 0.00 0.00 0.00 2.82
481 482 3.399440 TGTTAAAAAGGCAGGCATTGG 57.601 42.857 0.00 0.00 0.00 3.16
488 489 3.824810 GCAGGCATTGGCTCTCTC 58.175 61.111 10.19 0.00 40.87 3.20
489 490 1.224039 GCAGGCATTGGCTCTCTCT 59.776 57.895 10.19 0.00 40.87 3.10
490 491 0.394080 GCAGGCATTGGCTCTCTCTT 60.394 55.000 10.19 0.00 40.87 2.85
495 496 1.932511 GCATTGGCTCTCTCTTCTTCG 59.067 52.381 0.00 0.00 36.96 3.79
497 498 0.247736 TTGGCTCTCTCTTCTTCGCC 59.752 55.000 0.00 0.00 38.01 5.54
498 499 0.613292 TGGCTCTCTCTTCTTCGCCT 60.613 55.000 0.00 0.00 38.33 5.52
500 501 0.814457 GCTCTCTCTTCTTCGCCTCA 59.186 55.000 0.00 0.00 0.00 3.86
501 502 1.203523 GCTCTCTCTTCTTCGCCTCAA 59.796 52.381 0.00 0.00 0.00 3.02
502 503 2.159114 GCTCTCTCTTCTTCGCCTCAAT 60.159 50.000 0.00 0.00 0.00 2.57
504 505 4.261994 GCTCTCTCTTCTTCGCCTCAATAT 60.262 45.833 0.00 0.00 0.00 1.28
505 506 5.738783 GCTCTCTCTTCTTCGCCTCAATATT 60.739 44.000 0.00 0.00 0.00 1.28
509 510 8.424918 TCTCTCTTCTTCGCCTCAATATTTATT 58.575 33.333 0.00 0.00 0.00 1.40
510 511 8.594881 TCTCTTCTTCGCCTCAATATTTATTC 57.405 34.615 0.00 0.00 0.00 1.75
512 513 9.698309 CTCTTCTTCGCCTCAATATTTATTCTA 57.302 33.333 0.00 0.00 0.00 2.10
513 514 9.698309 TCTTCTTCGCCTCAATATTTATTCTAG 57.302 33.333 0.00 0.00 0.00 2.43
514 515 8.833231 TTCTTCGCCTCAATATTTATTCTAGG 57.167 34.615 0.00 0.00 32.69 3.02
516 517 7.872993 TCTTCGCCTCAATATTTATTCTAGGTG 59.127 37.037 11.91 11.91 37.53 4.00
517 518 7.297936 TCGCCTCAATATTTATTCTAGGTGA 57.702 36.000 14.66 14.66 40.02 4.02
519 520 7.819415 TCGCCTCAATATTTATTCTAGGTGATG 59.181 37.037 14.66 4.55 38.81 3.07
522 523 7.337942 CCTCAATATTTATTCTAGGTGATGCCC 59.662 40.741 0.00 0.00 38.26 5.36
523 524 7.175104 TCAATATTTATTCTAGGTGATGCCCC 58.825 38.462 0.00 0.00 38.26 5.80
525 526 4.437682 TTTATTCTAGGTGATGCCCCTG 57.562 45.455 0.00 0.00 38.26 4.45
531 532 0.033796 AGGTGATGCCCCTGACATTG 60.034 55.000 0.00 0.00 38.26 2.82
532 533 1.669999 GGTGATGCCCCTGACATTGC 61.670 60.000 0.00 0.00 0.00 3.56
533 534 0.966875 GTGATGCCCCTGACATTGCA 60.967 55.000 0.00 0.00 38.23 4.08
534 535 0.966875 TGATGCCCCTGACATTGCAC 60.967 55.000 0.00 0.00 36.41 4.57
535 536 1.669999 GATGCCCCTGACATTGCACC 61.670 60.000 0.00 0.00 36.41 5.01
537 538 1.683365 GCCCCTGACATTGCACCAT 60.683 57.895 0.00 0.00 0.00 3.55
538 539 1.259840 GCCCCTGACATTGCACCATT 61.260 55.000 0.00 0.00 0.00 3.16
539 540 0.533491 CCCCTGACATTGCACCATTG 59.467 55.000 0.00 0.00 0.00 2.82
540 541 1.259609 CCCTGACATTGCACCATTGT 58.740 50.000 0.00 0.00 31.85 2.71
542 543 2.164219 CCCTGACATTGCACCATTGTAC 59.836 50.000 0.00 0.00 29.78 2.90
544 545 3.127548 CCTGACATTGCACCATTGTACTC 59.872 47.826 0.00 0.00 29.78 2.59
546 547 2.423538 GACATTGCACCATTGTACTCCC 59.576 50.000 0.00 0.00 29.78 4.30
548 549 2.489938 TTGCACCATTGTACTCCCTC 57.510 50.000 0.00 0.00 0.00 4.30
549 550 0.618458 TGCACCATTGTACTCCCTCC 59.382 55.000 0.00 0.00 0.00 4.30
550 551 0.618458 GCACCATTGTACTCCCTCCA 59.382 55.000 0.00 0.00 0.00 3.86
552 553 2.357154 GCACCATTGTACTCCCTCCATT 60.357 50.000 0.00 0.00 0.00 3.16
553 554 3.877735 GCACCATTGTACTCCCTCCATTT 60.878 47.826 0.00 0.00 0.00 2.32
554 555 4.627741 GCACCATTGTACTCCCTCCATTTA 60.628 45.833 0.00 0.00 0.00 1.40
555 556 5.126067 CACCATTGTACTCCCTCCATTTAG 58.874 45.833 0.00 0.00 0.00 1.85
556 557 4.788617 ACCATTGTACTCCCTCCATTTAGT 59.211 41.667 0.00 0.00 0.00 2.24
559 560 6.663523 CCATTGTACTCCCTCCATTTAGTTTT 59.336 38.462 0.00 0.00 0.00 2.43
561 562 8.674607 CATTGTACTCCCTCCATTTAGTTTTAC 58.325 37.037 0.00 0.00 0.00 2.01
566 567 6.062258 TCCCTCCATTTAGTTTTACTCTGG 57.938 41.667 0.00 0.00 0.00 3.86
567 568 5.788533 TCCCTCCATTTAGTTTTACTCTGGA 59.211 40.000 0.00 0.00 33.31 3.86
569 570 7.626084 TCCCTCCATTTAGTTTTACTCTGGATA 59.374 37.037 0.00 0.00 33.66 2.59
591 592 9.010366 GGATATAAAATTTGTCGAAAGTCAAGC 57.990 33.333 0.00 0.00 40.04 4.01
592 593 9.774742 GATATAAAATTTGTCGAAAGTCAAGCT 57.225 29.630 0.00 0.00 40.04 3.74
594 595 6.812481 AAAATTTGTCGAAAGTCAAGCTTC 57.188 33.333 0.00 0.00 40.04 3.86
596 597 5.695851 ATTTGTCGAAAGTCAAGCTTCAT 57.304 34.783 0.00 0.00 40.04 2.57
597 598 6.801539 ATTTGTCGAAAGTCAAGCTTCATA 57.198 33.333 0.00 0.00 40.04 2.15
598 599 6.612247 TTTGTCGAAAGTCAAGCTTCATAA 57.388 33.333 0.00 0.00 40.04 1.90
600 601 6.228273 TGTCGAAAGTCAAGCTTCATAAAG 57.772 37.500 0.00 0.00 36.17 1.85
601 602 5.758296 TGTCGAAAGTCAAGCTTCATAAAGT 59.242 36.000 0.00 0.00 36.17 2.66
765 766 8.750515 TCAGATATAAGCATGGTCAAATTGAA 57.249 30.769 0.00 0.00 0.00 2.69
793 794 9.777297 AAAAAGCATGGTCAAATTTTACTATGT 57.223 25.926 22.29 11.66 37.04 2.29
795 796 9.777297 AAAGCATGGTCAAATTTTACTATGTTT 57.223 25.926 22.29 20.44 38.82 2.83
796 797 8.761575 AGCATGGTCAAATTTTACTATGTTTG 57.238 30.769 22.29 6.73 37.04 2.93
797 798 8.584157 AGCATGGTCAAATTTTACTATGTTTGA 58.416 29.630 22.29 0.00 37.04 2.69
828 829 9.811995 AAGCAAATCTTATATACACAGTACGAA 57.188 29.630 0.00 0.00 32.10 3.85
829 830 9.464714 AGCAAATCTTATATACACAGTACGAAG 57.535 33.333 0.00 0.00 0.00 3.79
908 910 0.528033 CAGTCCATCAGAGCAGCTCG 60.528 60.000 16.99 11.77 35.36 5.03
966 968 4.962151 GTCGTGAGAAGAAAAGAAAAACCG 59.038 41.667 0.00 0.00 45.01 4.44
967 969 4.034742 TCGTGAGAAGAAAAGAAAAACCGG 59.965 41.667 0.00 0.00 37.03 5.28
1070 1075 3.834447 TCGAAGCCCACGTCGTGTG 62.834 63.158 23.01 13.95 46.17 3.82
1452 1457 2.032223 CAGCTGCACTCACAGGCT 59.968 61.111 0.00 0.00 38.16 4.58
1530 1535 0.179020 CCAGGTGTGAGGAAGTTGCA 60.179 55.000 0.00 0.00 0.00 4.08
1533 1538 2.047061 AGGTGTGAGGAAGTTGCACTA 58.953 47.619 0.00 0.00 33.83 2.74
1538 1543 1.419762 TGAGGAAGTTGCACTAGCCAA 59.580 47.619 0.00 0.00 41.13 4.52
1551 1556 4.922791 GCCAAGAGCGTGTTTGAC 57.077 55.556 0.00 0.00 0.00 3.18
1746 1751 0.541764 TTGATTTGGGCAGGTGGGTC 60.542 55.000 0.00 0.00 0.00 4.46
1995 2000 9.619316 GTAAATGTTGCACTGATGTGTTTATAA 57.381 29.630 0.00 0.00 45.44 0.98
2016 2021 3.764237 TTCTGTTTACCTGGTCCACTC 57.236 47.619 0.63 0.00 0.00 3.51
2040 2045 4.568956 TGGTGATAACCTGATCATATGCG 58.431 43.478 0.00 0.00 38.11 4.73
2280 2285 3.431415 GCATTCTTCCCCTAAAAGGTGT 58.569 45.455 0.00 0.00 31.93 4.16
2297 2302 2.550208 GGTGTACATCCATCGATTCCCC 60.550 54.545 0.00 0.00 0.00 4.81
2306 2311 3.076937 TCCATCGATTCCCCCATCTAGTA 59.923 47.826 0.00 0.00 0.00 1.82
2332 2337 2.235898 GCTCTGTTCAGAGACCAAGGAT 59.764 50.000 27.38 0.00 38.13 3.24
2359 2364 5.964477 TGTTAGTATGAGTTCCTGATTCCCT 59.036 40.000 0.00 0.00 0.00 4.20
2360 2365 6.127054 TGTTAGTATGAGTTCCTGATTCCCTG 60.127 42.308 0.00 0.00 0.00 4.45
2361 2366 4.366267 AGTATGAGTTCCTGATTCCCTGT 58.634 43.478 0.00 0.00 0.00 4.00
2363 2368 3.423539 TGAGTTCCTGATTCCCTGTTG 57.576 47.619 0.00 0.00 0.00 3.33
2364 2369 2.711009 TGAGTTCCTGATTCCCTGTTGT 59.289 45.455 0.00 0.00 0.00 3.32
2365 2370 3.907474 TGAGTTCCTGATTCCCTGTTGTA 59.093 43.478 0.00 0.00 0.00 2.41
2366 2371 4.020218 TGAGTTCCTGATTCCCTGTTGTAG 60.020 45.833 0.00 0.00 0.00 2.74
2367 2372 4.168101 AGTTCCTGATTCCCTGTTGTAGA 58.832 43.478 0.00 0.00 0.00 2.59
2368 2373 4.020128 AGTTCCTGATTCCCTGTTGTAGAC 60.020 45.833 0.00 0.00 0.00 2.59
2369 2374 3.791320 TCCTGATTCCCTGTTGTAGACT 58.209 45.455 0.00 0.00 0.00 3.24
2370 2375 4.942944 TCCTGATTCCCTGTTGTAGACTA 58.057 43.478 0.00 0.00 0.00 2.59
2371 2376 4.956700 TCCTGATTCCCTGTTGTAGACTAG 59.043 45.833 0.00 0.00 0.00 2.57
2442 2469 3.885901 GGGATAAGCAGGAATTCAGGTTC 59.114 47.826 15.09 5.55 0.00 3.62
2473 2500 5.313712 TGTTTTCTGAATCTTACCCACCTC 58.686 41.667 0.00 0.00 0.00 3.85
2554 2582 2.457598 AGTTGTGAGCCGATAGAAGGA 58.542 47.619 0.00 0.00 39.76 3.36
2648 2677 8.749354 GGGATTTGTGAAGGTATCAAACTTAAT 58.251 33.333 0.00 0.00 40.50 1.40
2684 2714 9.462174 GATGACAATTTTTGATGTAGTTTCACA 57.538 29.630 0.00 0.00 0.00 3.58
2797 2827 5.880332 AGTTACGAATTACCTACGGTGAGTA 59.120 40.000 0.00 0.00 36.19 2.59
2881 2931 4.398319 TGTTTCCCTTCTCTTCCAACATC 58.602 43.478 0.00 0.00 0.00 3.06
2918 2971 7.661040 ACAAATTAACTATTGCATATGGAGGC 58.339 34.615 4.56 0.00 0.00 4.70
2944 2997 7.816031 CCAAGTCAAAAGTAGATTCATTGCATT 59.184 33.333 0.00 0.00 0.00 3.56
3019 3074 2.247358 CAAGTGTTTTGGCCACCCTAT 58.753 47.619 3.88 0.00 33.20 2.57
3082 3139 9.713684 ATCCATGTTCCTATCTTTTTATCCAAA 57.286 29.630 0.00 0.00 0.00 3.28
3205 3263 5.882557 CCTAGAATTTTGGCTTGCTCTTAGA 59.117 40.000 0.00 0.00 0.00 2.10
3575 3679 1.128692 GCGCAACAGCTTTCGAGTAAT 59.871 47.619 0.30 0.00 0.00 1.89
3588 3692 7.244192 GCTTTCGAGTAATAAAGCAACTTGAT 58.756 34.615 11.41 0.00 44.96 2.57
3658 3763 6.187682 TCCATTTCTAGGTTCCATCCTTTTC 58.812 40.000 0.00 0.00 38.86 2.29
3675 3782 9.631452 CATCCTTTTCTTGGAAAATTCTACTTC 57.369 33.333 6.00 0.00 37.13 3.01
3748 3958 5.399604 AACAACTTTCGAGTAAGAAACCG 57.600 39.130 3.89 0.00 35.44 4.44
3753 3963 5.354767 ACTTTCGAGTAAGAAACCGAAGTT 58.645 37.500 3.89 0.00 39.90 2.66
3788 4030 7.092891 ACAAAAATCAAAAGGAGAAGGAAAGGT 60.093 33.333 0.00 0.00 0.00 3.50
3910 4163 9.003112 CATAATGTCAAATTGCTTTCTTACTCG 57.997 33.333 0.00 0.00 0.00 4.18
3925 4178 0.655733 ACTCGAAAGTTGTTGCGTGG 59.344 50.000 0.00 0.00 35.98 4.94
3930 4183 2.031191 CGAAAGTTGTTGCGTGGTACTT 59.969 45.455 0.00 0.00 29.05 2.24
4049 4323 4.051922 TCGAGAGAAGTGTCTTTTCTTGC 58.948 43.478 10.53 0.00 35.14 4.01
4060 4334 6.156949 AGTGTCTTTTCTTGCCTATCTGGATA 59.843 38.462 0.00 0.00 38.35 2.59
4070 4344 6.753913 TGCCTATCTGGATATATTGGATCC 57.246 41.667 4.20 4.20 42.90 3.36
4082 4360 7.070074 GGATATATTGGATCCTTCCTATGACGT 59.930 40.741 14.23 0.00 43.07 4.34
4147 4425 0.042131 TCTATGAACCGGTCCTGGGT 59.958 55.000 8.04 0.00 40.20 4.51
4165 4446 5.163395 CCTGGGTCTCCTTCTTTCTATGTAC 60.163 48.000 0.00 0.00 0.00 2.90
4292 4576 3.428045 CCCTAAGAGCAAGCCAAAATTCG 60.428 47.826 0.00 0.00 0.00 3.34
4323 4607 2.980233 GGCAACTGCAGTTCGGCT 60.980 61.111 29.92 11.32 44.36 5.52
4348 4632 6.403866 TTGATTGGCTTCAACACAACTTAT 57.596 33.333 0.24 0.00 32.63 1.73
4350 4634 5.769662 TGATTGGCTTCAACACAACTTATCT 59.230 36.000 0.00 0.00 32.63 1.98
4475 4767 0.692419 TTGTGGGGTGGCCAAAACAT 60.692 50.000 7.24 0.00 0.00 2.71
4671 4966 8.529424 TTCATCATCTTATGAAAGGCATTTCT 57.471 30.769 22.90 11.97 44.35 2.52
5034 5372 6.492087 TGGGTAAGATTCGGAAAACAGAAAAT 59.508 34.615 0.00 0.00 0.00 1.82
5058 5396 7.676683 TCTAACCTGAATTACTGCTTATCCT 57.323 36.000 0.00 0.00 0.00 3.24
5175 5578 4.043561 TGTGCACCTTTTAGGGGAAGAATA 59.956 41.667 15.69 0.00 43.10 1.75
5259 5662 2.796032 GCACTCAGTCTTTGCAAACCAC 60.796 50.000 8.05 8.04 36.22 4.16
5373 5776 1.638070 TGGGTTAGTTGATGATGGGCA 59.362 47.619 0.00 0.00 0.00 5.36
5527 5978 4.067972 TCTTCTTGTGGCGAGTAAAAGT 57.932 40.909 0.00 0.00 0.00 2.66
6281 7725 4.457949 TCCTTTTTCCTTACCAGAATTCGC 59.542 41.667 0.00 0.00 0.00 4.70
6308 7752 2.094906 TGTCCTGTCGTTTGTATCTCCG 60.095 50.000 0.00 0.00 0.00 4.63
6347 7791 7.502561 AGTGTTATCTAACCAGAAAACAAGCTT 59.497 33.333 0.00 0.00 35.37 3.74
6477 7921 1.265635 GGTTGCGTTGCTCATTACACA 59.734 47.619 0.00 0.00 0.00 3.72
6607 8093 3.307691 CCTCTTCACCAACATCAGGCTTA 60.308 47.826 0.00 0.00 0.00 3.09
6796 8392 2.268107 ACGGGGGTTCCATTGTTACTA 58.732 47.619 0.00 0.00 34.36 1.82
6841 8437 7.176589 AGGTACTCTTCTTCTTACCAGAATG 57.823 40.000 0.00 0.00 38.42 2.67
6899 8495 7.491372 TGCTAGTGCATTGTATTGTCTAACTAC 59.509 37.037 0.00 0.00 45.31 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.115095 GCATTACGGTTGCTCTAAAGATACTAG 59.885 40.741 0.00 0.00 37.14 2.57
4 5 5.522460 TGCATTACGGTTGCTCTAAAGATAC 59.478 40.000 6.39 0.00 40.77 2.24
6 7 4.513442 TGCATTACGGTTGCTCTAAAGAT 58.487 39.130 6.39 0.00 40.77 2.40
7 8 3.932822 TGCATTACGGTTGCTCTAAAGA 58.067 40.909 6.39 0.00 40.77 2.52
8 9 4.678509 TTGCATTACGGTTGCTCTAAAG 57.321 40.909 6.39 0.00 40.77 1.85
10 11 4.320023 TCTTTGCATTACGGTTGCTCTAA 58.680 39.130 6.39 0.00 40.77 2.10
12 13 2.778299 TCTTTGCATTACGGTTGCTCT 58.222 42.857 6.39 0.00 40.77 4.09
13 14 3.552604 TTCTTTGCATTACGGTTGCTC 57.447 42.857 6.39 0.00 40.77 4.26
14 15 4.314740 TTTTCTTTGCATTACGGTTGCT 57.685 36.364 6.39 0.00 40.77 3.91
15 16 4.268884 TGTTTTTCTTTGCATTACGGTTGC 59.731 37.500 0.00 0.00 40.55 4.17
16 17 5.289675 TGTGTTTTTCTTTGCATTACGGTTG 59.710 36.000 0.00 0.00 0.00 3.77
17 18 5.411781 TGTGTTTTTCTTTGCATTACGGTT 58.588 33.333 0.00 0.00 0.00 4.44
18 19 5.000012 TGTGTTTTTCTTTGCATTACGGT 58.000 34.783 0.00 0.00 0.00 4.83
19 20 5.051106 CCTTGTGTTTTTCTTTGCATTACGG 60.051 40.000 0.00 0.00 0.00 4.02
21 22 6.902224 ACCTTGTGTTTTTCTTTGCATTAC 57.098 33.333 0.00 0.00 0.00 1.89
23 24 9.777297 ATATAACCTTGTGTTTTTCTTTGCATT 57.223 25.926 0.00 0.00 38.42 3.56
27 28 9.039870 TGCAATATAACCTTGTGTTTTTCTTTG 57.960 29.630 0.00 0.00 38.42 2.77
28 29 9.606631 TTGCAATATAACCTTGTGTTTTTCTTT 57.393 25.926 0.00 0.00 38.42 2.52
31 32 8.587952 ACTTGCAATATAACCTTGTGTTTTTC 57.412 30.769 0.00 0.00 38.42 2.29
32 33 8.956533 AACTTGCAATATAACCTTGTGTTTTT 57.043 26.923 0.00 0.00 38.42 1.94
33 34 9.471084 GTAACTTGCAATATAACCTTGTGTTTT 57.529 29.630 0.00 0.00 38.42 2.43
34 35 8.856103 AGTAACTTGCAATATAACCTTGTGTTT 58.144 29.630 0.00 0.00 38.42 2.83
35 36 8.404107 AGTAACTTGCAATATAACCTTGTGTT 57.596 30.769 0.00 0.00 41.11 3.32
39 40 6.828785 AGGGAGTAACTTGCAATATAACCTTG 59.171 38.462 0.00 0.00 0.00 3.61
42 43 6.018180 CGAAGGGAGTAACTTGCAATATAACC 60.018 42.308 0.00 4.04 0.00 2.85
43 44 6.537660 ACGAAGGGAGTAACTTGCAATATAAC 59.462 38.462 0.00 0.00 0.00 1.89
45 46 6.229936 ACGAAGGGAGTAACTTGCAATATA 57.770 37.500 0.00 0.00 0.00 0.86
47 48 4.546829 ACGAAGGGAGTAACTTGCAATA 57.453 40.909 0.00 0.00 0.00 1.90
48 49 3.418684 ACGAAGGGAGTAACTTGCAAT 57.581 42.857 0.00 0.00 0.00 3.56
51 52 2.074576 GGAACGAAGGGAGTAACTTGC 58.925 52.381 0.00 0.00 0.00 4.01
52 53 3.396260 TGGAACGAAGGGAGTAACTTG 57.604 47.619 0.00 0.00 0.00 3.16
53 54 4.426736 TTTGGAACGAAGGGAGTAACTT 57.573 40.909 0.00 0.00 0.00 2.66
54 55 4.426736 TTTTGGAACGAAGGGAGTAACT 57.573 40.909 0.00 0.00 0.00 2.24
55 56 6.168389 TCTATTTTGGAACGAAGGGAGTAAC 58.832 40.000 0.00 0.00 0.00 2.50
56 57 6.363167 TCTATTTTGGAACGAAGGGAGTAA 57.637 37.500 0.00 0.00 0.00 2.24
57 58 6.555463 ATCTATTTTGGAACGAAGGGAGTA 57.445 37.500 0.00 0.00 0.00 2.59
107 108 9.158233 CGTTCTAAAATAGATGACCCAACTTTA 57.842 33.333 0.00 0.00 34.22 1.85
108 109 7.881232 TCGTTCTAAAATAGATGACCCAACTTT 59.119 33.333 0.00 0.00 34.22 2.66
111 112 7.201617 CCTTCGTTCTAAAATAGATGACCCAAC 60.202 40.741 0.00 0.00 34.22 3.77
112 113 6.821665 CCTTCGTTCTAAAATAGATGACCCAA 59.178 38.462 0.00 0.00 34.22 4.12
114 115 5.758784 CCCTTCGTTCTAAAATAGATGACCC 59.241 44.000 0.00 0.00 34.22 4.46
115 116 6.579865 TCCCTTCGTTCTAAAATAGATGACC 58.420 40.000 0.00 0.00 34.22 4.02
117 118 7.419711 ACTCCCTTCGTTCTAAAATAGATGA 57.580 36.000 0.00 0.00 34.22 2.92
119 120 8.536340 AGTACTCCCTTCGTTCTAAAATAGAT 57.464 34.615 0.00 0.00 34.22 1.98
120 121 7.951347 AGTACTCCCTTCGTTCTAAAATAGA 57.049 36.000 0.00 0.00 0.00 1.98
122 123 8.370182 ACAAAGTACTCCCTTCGTTCTAAAATA 58.630 33.333 0.00 0.00 0.00 1.40
123 124 7.222161 ACAAAGTACTCCCTTCGTTCTAAAAT 58.778 34.615 0.00 0.00 0.00 1.82
125 126 6.165700 ACAAAGTACTCCCTTCGTTCTAAA 57.834 37.500 0.00 0.00 0.00 1.85
126 127 5.796424 ACAAAGTACTCCCTTCGTTCTAA 57.204 39.130 0.00 0.00 0.00 2.10
127 128 7.472334 AATACAAAGTACTCCCTTCGTTCTA 57.528 36.000 0.00 0.00 0.00 2.10
129 130 7.092716 TGTAATACAAAGTACTCCCTTCGTTC 58.907 38.462 0.00 0.00 0.00 3.95
131 132 6.594788 TGTAATACAAAGTACTCCCTTCGT 57.405 37.500 0.00 0.00 0.00 3.85
132 133 7.063074 CACTTGTAATACAAAGTACTCCCTTCG 59.937 40.741 7.30 0.00 37.69 3.79
134 135 6.653740 GCACTTGTAATACAAAGTACTCCCTT 59.346 38.462 7.30 0.00 37.69 3.95
136 137 5.935789 TGCACTTGTAATACAAAGTACTCCC 59.064 40.000 7.30 0.00 37.69 4.30
137 138 7.295930 GTTGCACTTGTAATACAAAGTACTCC 58.704 38.462 7.30 0.23 37.69 3.85
138 139 7.172703 AGGTTGCACTTGTAATACAAAGTACTC 59.827 37.037 7.30 0.00 37.69 2.59
139 140 6.996282 AGGTTGCACTTGTAATACAAAGTACT 59.004 34.615 7.30 0.00 37.69 2.73
140 141 7.172703 AGAGGTTGCACTTGTAATACAAAGTAC 59.827 37.037 7.30 3.86 37.69 2.73
143 144 6.560253 AGAGGTTGCACTTGTAATACAAAG 57.440 37.500 7.30 4.41 37.69 2.77
146 147 5.616270 TGAAGAGGTTGCACTTGTAATACA 58.384 37.500 0.00 0.00 0.00 2.29
147 148 6.554334 TTGAAGAGGTTGCACTTGTAATAC 57.446 37.500 0.00 0.00 0.00 1.89
149 150 6.463995 TTTTGAAGAGGTTGCACTTGTAAT 57.536 33.333 0.00 0.00 0.00 1.89
152 153 4.799564 TTTTTGAAGAGGTTGCACTTGT 57.200 36.364 0.00 0.00 0.00 3.16
153 154 5.581874 ACAATTTTTGAAGAGGTTGCACTTG 59.418 36.000 0.00 0.00 0.00 3.16
154 155 5.733676 ACAATTTTTGAAGAGGTTGCACTT 58.266 33.333 0.00 0.00 0.00 3.16
156 157 7.713764 AATACAATTTTTGAAGAGGTTGCAC 57.286 32.000 0.00 0.00 0.00 4.57
157 158 9.823647 TTTAATACAATTTTTGAAGAGGTTGCA 57.176 25.926 0.00 0.00 0.00 4.08
255 256 9.327628 TCCATCGATTATACACCGATTTTAAAA 57.672 29.630 2.51 2.51 40.54 1.52
259 260 7.158697 TCATCCATCGATTATACACCGATTTT 58.841 34.615 0.00 0.00 40.54 1.82
262 263 5.679894 GCTCATCCATCGATTATACACCGAT 60.680 44.000 0.00 0.00 42.88 4.18
263 264 4.380550 GCTCATCCATCGATTATACACCGA 60.381 45.833 0.00 0.00 36.72 4.69
264 265 3.859961 GCTCATCCATCGATTATACACCG 59.140 47.826 0.00 0.00 0.00 4.94
270 271 9.973450 GTTGTATATAGCTCATCCATCGATTAT 57.027 33.333 0.00 0.00 0.00 1.28
271 272 9.190317 AGTTGTATATAGCTCATCCATCGATTA 57.810 33.333 0.00 0.00 0.00 1.75
274 275 6.434340 ACAGTTGTATATAGCTCATCCATCGA 59.566 38.462 0.00 0.00 0.00 3.59
276 277 8.090831 TCAACAGTTGTATATAGCTCATCCATC 58.909 37.037 13.14 0.00 0.00 3.51
279 280 8.662781 TTTCAACAGTTGTATATAGCTCATCC 57.337 34.615 13.14 0.00 0.00 3.51
281 282 8.982685 CGATTTCAACAGTTGTATATAGCTCAT 58.017 33.333 13.14 0.00 0.00 2.90
282 283 8.194769 TCGATTTCAACAGTTGTATATAGCTCA 58.805 33.333 13.14 0.00 0.00 4.26
285 286 8.354011 ACTCGATTTCAACAGTTGTATATAGC 57.646 34.615 13.14 0.00 0.00 2.97
286 287 9.516314 TGACTCGATTTCAACAGTTGTATATAG 57.484 33.333 13.14 10.32 0.00 1.31
291 292 7.870954 ACTAATGACTCGATTTCAACAGTTGTA 59.129 33.333 13.14 0.35 0.00 2.41
292 293 6.706270 ACTAATGACTCGATTTCAACAGTTGT 59.294 34.615 13.14 0.00 0.00 3.32
301 302 7.684670 TGTAAATGCACTAATGACTCGATTTC 58.315 34.615 0.00 0.00 0.00 2.17
302 303 7.334421 ACTGTAAATGCACTAATGACTCGATTT 59.666 33.333 0.00 0.00 0.00 2.17
306 307 5.576774 TCACTGTAAATGCACTAATGACTCG 59.423 40.000 0.00 0.00 0.00 4.18
309 310 7.751732 TCAATCACTGTAAATGCACTAATGAC 58.248 34.615 0.00 0.00 0.00 3.06
310 311 7.920160 TCAATCACTGTAAATGCACTAATGA 57.080 32.000 0.00 0.00 0.00 2.57
313 314 9.665719 TCTTATCAATCACTGTAAATGCACTAA 57.334 29.630 0.00 0.00 0.00 2.24
314 315 9.836864 ATCTTATCAATCACTGTAAATGCACTA 57.163 29.630 0.00 0.00 0.00 2.74
315 316 8.743085 ATCTTATCAATCACTGTAAATGCACT 57.257 30.769 0.00 0.00 0.00 4.40
316 317 8.615211 TGATCTTATCAATCACTGTAAATGCAC 58.385 33.333 0.00 0.00 36.11 4.57
352 353 8.854117 GCTTTCTCTAAATTATGTGATGGGATT 58.146 33.333 0.00 0.00 0.00 3.01
354 355 7.345691 TGCTTTCTCTAAATTATGTGATGGGA 58.654 34.615 0.00 0.00 0.00 4.37
356 357 9.459640 CATTGCTTTCTCTAAATTATGTGATGG 57.540 33.333 0.00 0.00 0.00 3.51
388 389 9.760926 AGACTAAGAGCTCATCCATTATACATA 57.239 33.333 17.77 0.00 0.00 2.29
390 391 8.484214 AAGACTAAGAGCTCATCCATTATACA 57.516 34.615 17.77 0.00 0.00 2.29
398 399 7.883311 AGTAGAGATAAGACTAAGAGCTCATCC 59.117 40.741 17.77 0.00 0.00 3.51
399 400 8.848474 AGTAGAGATAAGACTAAGAGCTCATC 57.152 38.462 17.77 7.38 0.00 2.92
403 404 8.496088 TGGTTAGTAGAGATAAGACTAAGAGCT 58.504 37.037 0.00 0.00 0.00 4.09
404 405 8.680039 TGGTTAGTAGAGATAAGACTAAGAGC 57.320 38.462 0.00 0.00 0.00 4.09
446 447 8.798153 GCCTTTTTAACATTATTTGTCTCATCG 58.202 33.333 0.00 0.00 37.68 3.84
449 450 8.087750 CCTGCCTTTTTAACATTATTTGTCTCA 58.912 33.333 0.00 0.00 37.68 3.27
450 451 7.063426 GCCTGCCTTTTTAACATTATTTGTCTC 59.937 37.037 0.00 0.00 37.68 3.36
452 453 6.648725 TGCCTGCCTTTTTAACATTATTTGTC 59.351 34.615 0.00 0.00 37.68 3.18
454 455 7.614124 ATGCCTGCCTTTTTAACATTATTTG 57.386 32.000 0.00 0.00 0.00 2.32
460 461 3.869526 GCCAATGCCTGCCTTTTTAACAT 60.870 43.478 0.00 0.00 0.00 2.71
461 462 2.549778 GCCAATGCCTGCCTTTTTAACA 60.550 45.455 0.00 0.00 0.00 2.41
462 463 2.076100 GCCAATGCCTGCCTTTTTAAC 58.924 47.619 0.00 0.00 0.00 2.01
463 464 1.977129 AGCCAATGCCTGCCTTTTTAA 59.023 42.857 0.00 0.00 38.69 1.52
465 466 0.322648 GAGCCAATGCCTGCCTTTTT 59.677 50.000 0.00 0.00 38.69 1.94
468 469 1.379576 GAGAGCCAATGCCTGCCTT 60.380 57.895 0.00 0.00 38.69 4.35
470 471 1.823041 GAGAGAGCCAATGCCTGCC 60.823 63.158 0.00 0.00 38.69 4.85
471 472 0.394080 AAGAGAGAGCCAATGCCTGC 60.394 55.000 0.00 0.00 38.69 4.85
472 473 1.209990 AGAAGAGAGAGCCAATGCCTG 59.790 52.381 0.00 0.00 38.69 4.85
473 474 1.582389 AGAAGAGAGAGCCAATGCCT 58.418 50.000 0.00 0.00 38.69 4.75
474 475 2.287769 GAAGAAGAGAGAGCCAATGCC 58.712 52.381 0.00 0.00 38.69 4.40
475 476 1.932511 CGAAGAAGAGAGAGCCAATGC 59.067 52.381 0.00 0.00 37.95 3.56
480 481 0.102300 GAGGCGAAGAAGAGAGAGCC 59.898 60.000 0.00 0.00 44.45 4.70
481 482 0.814457 TGAGGCGAAGAAGAGAGAGC 59.186 55.000 0.00 0.00 0.00 4.09
482 483 3.799281 ATTGAGGCGAAGAAGAGAGAG 57.201 47.619 0.00 0.00 0.00 3.20
487 488 9.698309 CTAGAATAAATATTGAGGCGAAGAAGA 57.302 33.333 0.00 0.00 0.00 2.87
488 489 8.930760 CCTAGAATAAATATTGAGGCGAAGAAG 58.069 37.037 0.00 0.00 0.00 2.85
489 490 8.429641 ACCTAGAATAAATATTGAGGCGAAGAA 58.570 33.333 0.00 0.00 32.46 2.52
490 491 7.872993 CACCTAGAATAAATATTGAGGCGAAGA 59.127 37.037 0.00 0.00 32.46 2.87
495 496 7.148171 GGCATCACCTAGAATAAATATTGAGGC 60.148 40.741 0.00 0.00 32.46 4.70
497 498 7.337942 GGGGCATCACCTAGAATAAATATTGAG 59.662 40.741 0.00 0.00 39.10 3.02
498 499 7.018550 AGGGGCATCACCTAGAATAAATATTGA 59.981 37.037 0.00 0.00 36.32 2.57
500 501 7.018550 TCAGGGGCATCACCTAGAATAAATATT 59.981 37.037 0.00 0.00 36.32 1.28
501 502 6.505344 TCAGGGGCATCACCTAGAATAAATAT 59.495 38.462 0.00 0.00 36.32 1.28
502 503 5.849475 TCAGGGGCATCACCTAGAATAAATA 59.151 40.000 0.00 0.00 36.32 1.40
504 505 4.044308 TCAGGGGCATCACCTAGAATAAA 58.956 43.478 0.00 0.00 36.32 1.40
505 506 3.391296 GTCAGGGGCATCACCTAGAATAA 59.609 47.826 0.00 0.00 36.32 1.40
509 510 0.042581 TGTCAGGGGCATCACCTAGA 59.957 55.000 0.00 0.00 36.32 2.43
510 511 1.135094 ATGTCAGGGGCATCACCTAG 58.865 55.000 0.00 0.00 36.32 3.02
512 513 0.033796 CAATGTCAGGGGCATCACCT 60.034 55.000 0.00 0.00 39.43 4.00
513 514 1.669999 GCAATGTCAGGGGCATCACC 61.670 60.000 0.00 0.00 37.93 4.02
514 515 0.966875 TGCAATGTCAGGGGCATCAC 60.967 55.000 0.00 0.00 0.00 3.06
516 517 1.669999 GGTGCAATGTCAGGGGCATC 61.670 60.000 0.00 0.00 38.68 3.91
517 518 1.683365 GGTGCAATGTCAGGGGCAT 60.683 57.895 0.00 0.00 38.68 4.40
519 520 1.259840 AATGGTGCAATGTCAGGGGC 61.260 55.000 0.00 0.00 0.00 5.80
522 523 3.084039 AGTACAATGGTGCAATGTCAGG 58.916 45.455 0.00 0.00 29.77 3.86
523 524 3.127548 GGAGTACAATGGTGCAATGTCAG 59.872 47.826 0.00 0.00 29.77 3.51
525 526 2.423538 GGGAGTACAATGGTGCAATGTC 59.576 50.000 0.00 0.00 29.77 3.06
531 532 0.618458 TGGAGGGAGTACAATGGTGC 59.382 55.000 0.00 0.00 0.00 5.01
532 533 3.652057 AATGGAGGGAGTACAATGGTG 57.348 47.619 0.00 0.00 0.00 4.17
533 534 4.788617 ACTAAATGGAGGGAGTACAATGGT 59.211 41.667 0.00 0.00 0.00 3.55
534 535 5.373812 ACTAAATGGAGGGAGTACAATGG 57.626 43.478 0.00 0.00 0.00 3.16
535 536 7.703058 AAAACTAAATGGAGGGAGTACAATG 57.297 36.000 0.00 0.00 0.00 2.82
537 538 7.981142 AGTAAAACTAAATGGAGGGAGTACAA 58.019 34.615 0.00 0.00 0.00 2.41
538 539 7.456902 AGAGTAAAACTAAATGGAGGGAGTACA 59.543 37.037 0.00 0.00 0.00 2.90
539 540 7.764901 CAGAGTAAAACTAAATGGAGGGAGTAC 59.235 40.741 0.00 0.00 0.00 2.73
540 541 7.093024 CCAGAGTAAAACTAAATGGAGGGAGTA 60.093 40.741 0.00 0.00 31.59 2.59
542 543 6.070194 TCCAGAGTAAAACTAAATGGAGGGAG 60.070 42.308 4.76 0.00 33.26 4.30
544 545 6.062258 TCCAGAGTAAAACTAAATGGAGGG 57.938 41.667 4.76 0.00 33.26 4.30
561 562 9.922305 GACTTTCGACAAATTTTATATCCAGAG 57.078 33.333 0.00 0.00 0.00 3.35
566 567 9.774742 AGCTTGACTTTCGACAAATTTTATATC 57.225 29.630 0.00 0.00 0.00 1.63
569 570 8.134895 TGAAGCTTGACTTTCGACAAATTTTAT 58.865 29.630 2.10 0.00 39.29 1.40
571 572 6.329496 TGAAGCTTGACTTTCGACAAATTTT 58.671 32.000 2.10 0.00 39.29 1.82
572 573 5.890334 TGAAGCTTGACTTTCGACAAATTT 58.110 33.333 2.10 0.00 39.29 1.82
573 574 5.499139 TGAAGCTTGACTTTCGACAAATT 57.501 34.783 2.10 0.00 39.29 1.82
575 576 6.612247 TTATGAAGCTTGACTTTCGACAAA 57.388 33.333 2.10 0.00 39.29 2.83
577 578 5.758296 ACTTTATGAAGCTTGACTTTCGACA 59.242 36.000 2.10 0.00 39.29 4.35
673 674 8.951614 ACCAAATCAATATCATCAGATCCATT 57.048 30.769 0.00 0.00 35.67 3.16
770 771 9.206870 CAAACATAGTAAAATTTGACCATGCTT 57.793 29.630 12.52 5.69 34.62 3.91
802 803 9.811995 TTCGTACTGTGTATATAAGATTTGCTT 57.188 29.630 0.00 0.00 40.68 3.91
803 804 9.464714 CTTCGTACTGTGTATATAAGATTTGCT 57.535 33.333 0.00 0.00 0.00 3.91
804 805 9.245962 ACTTCGTACTGTGTATATAAGATTTGC 57.754 33.333 0.00 0.00 0.00 3.68
814 815 9.979578 TTTCCTTTTTACTTCGTACTGTGTATA 57.020 29.630 0.00 0.00 0.00 1.47
815 816 8.768019 GTTTCCTTTTTACTTCGTACTGTGTAT 58.232 33.333 0.00 0.00 0.00 2.29
819 820 5.234972 CCGTTTCCTTTTTACTTCGTACTGT 59.765 40.000 0.00 0.00 0.00 3.55
822 823 5.463392 ACTCCGTTTCCTTTTTACTTCGTAC 59.537 40.000 0.00 0.00 0.00 3.67
824 825 4.445453 ACTCCGTTTCCTTTTTACTTCGT 58.555 39.130 0.00 0.00 0.00 3.85
825 826 5.387752 CGTACTCCGTTTCCTTTTTACTTCG 60.388 44.000 0.00 0.00 0.00 3.79
826 827 5.909210 CGTACTCCGTTTCCTTTTTACTTC 58.091 41.667 0.00 0.00 0.00 3.01
842 843 2.704808 GGTCCGGGTCACGTACTCC 61.705 68.421 0.00 0.00 42.24 3.85
845 846 1.373371 GTTGGTCCGGGTCACGTAC 60.373 63.158 0.00 0.00 42.24 3.67
882 883 0.612229 CTCTGATGGACTGTGCAGGT 59.388 55.000 8.26 0.00 0.00 4.00
937 939 0.937699 TTTCTTCTCACGACGCGGTG 60.938 55.000 12.47 10.40 39.29 4.94
938 940 0.249155 TTTTCTTCTCACGACGCGGT 60.249 50.000 12.47 0.00 0.00 5.68
1362 1367 1.384191 GGTGAAGCTGTTGGGGGAT 59.616 57.895 0.00 0.00 0.00 3.85
1479 1484 4.065281 AGCCCGGTCTGCACGTAC 62.065 66.667 0.00 0.00 0.00 3.67
1500 1505 1.278985 TCACACCTGGCATAGAGGTTG 59.721 52.381 0.00 0.00 41.31 3.77
1530 1535 1.070134 TCAAACACGCTCTTGGCTAGT 59.930 47.619 0.00 0.00 39.13 2.57
1533 1538 1.498865 CGTCAAACACGCTCTTGGCT 61.499 55.000 0.00 0.00 42.87 4.75
1746 1751 6.012508 TCCCCTTCCTATCTATAAAAGCATGG 60.013 42.308 0.00 0.00 0.00 3.66
1940 1945 4.863131 GCTGGAGCATTCTTGAGAAAATTG 59.137 41.667 0.00 0.00 41.59 2.32
1941 1946 4.771054 AGCTGGAGCATTCTTGAGAAAATT 59.229 37.500 0.65 0.00 45.16 1.82
1942 1947 4.342359 AGCTGGAGCATTCTTGAGAAAAT 58.658 39.130 0.65 0.00 45.16 1.82
1995 2000 3.910627 AGAGTGGACCAGGTAAACAGAAT 59.089 43.478 0.00 0.00 0.00 2.40
2280 2285 2.110753 TGGGGGAATCGATGGATGTA 57.889 50.000 0.00 0.00 31.83 2.29
2297 2302 6.488344 TCTGAACAGAGCACTATACTAGATGG 59.512 42.308 0.00 0.00 32.82 3.51
2332 2337 5.939764 ATCAGGAACTCATACTAACAGCA 57.060 39.130 0.00 0.00 34.60 4.41
2359 2364 5.416639 TCGGTAAGCAATCTAGTCTACAACA 59.583 40.000 0.00 0.00 0.00 3.33
2360 2365 5.742926 GTCGGTAAGCAATCTAGTCTACAAC 59.257 44.000 0.00 0.00 0.00 3.32
2361 2366 5.651139 AGTCGGTAAGCAATCTAGTCTACAA 59.349 40.000 0.00 0.00 0.00 2.41
2363 2368 5.754543 AGTCGGTAAGCAATCTAGTCTAC 57.245 43.478 0.00 0.00 0.00 2.59
2364 2369 6.376299 TGAAAGTCGGTAAGCAATCTAGTCTA 59.624 38.462 0.00 0.00 0.00 2.59
2365 2370 5.185249 TGAAAGTCGGTAAGCAATCTAGTCT 59.815 40.000 0.00 0.00 0.00 3.24
2366 2371 5.408356 TGAAAGTCGGTAAGCAATCTAGTC 58.592 41.667 0.00 0.00 0.00 2.59
2367 2372 5.401531 TGAAAGTCGGTAAGCAATCTAGT 57.598 39.130 0.00 0.00 0.00 2.57
2368 2373 6.042777 TCATGAAAGTCGGTAAGCAATCTAG 58.957 40.000 0.00 0.00 0.00 2.43
2369 2374 5.972935 TCATGAAAGTCGGTAAGCAATCTA 58.027 37.500 0.00 0.00 0.00 1.98
2370 2375 4.832248 TCATGAAAGTCGGTAAGCAATCT 58.168 39.130 0.00 0.00 0.00 2.40
2371 2376 5.504665 CCATCATGAAAGTCGGTAAGCAATC 60.505 44.000 0.00 0.00 0.00 2.67
2442 2469 6.578919 GGTAAGATTCAGAAAACAGAAAAGCG 59.421 38.462 0.00 0.00 0.00 4.68
2473 2500 2.685897 CCCTTTCGAGACTAGGACTCTG 59.314 54.545 14.23 9.55 32.87 3.35
2554 2582 5.942826 CCTTTCTGAAACCTGCTATCTTTCT 59.057 40.000 0.00 0.00 0.00 2.52
2715 2745 2.867624 TGGTACTGTCACTAGTTCGGT 58.132 47.619 12.19 12.19 32.19 4.69
2797 2827 2.517127 AGATCATTGGGGCAGAAGGAAT 59.483 45.455 0.00 0.00 0.00 3.01
2846 2896 4.071961 AGGGAAACATCAAAGGCAAAAC 57.928 40.909 0.00 0.00 0.00 2.43
2881 2931 9.410556 CAATAGTTAATTTGTCAGGTTTCAAGG 57.589 33.333 0.00 0.00 0.00 3.61
2918 2971 6.680810 TGCAATGAATCTACTTTTGACTTGG 58.319 36.000 0.00 0.00 0.00 3.61
2944 2997 9.743057 CAATTGTTTACTGGTCTAATTTTGACA 57.257 29.630 12.02 0.10 36.26 3.58
2990 3043 3.368495 GCCAAAACACTTGTACCTTTCG 58.632 45.455 0.00 0.00 0.00 3.46
3019 3074 6.605995 TCCAATCGGTACTCTTCTCTTGAATA 59.394 38.462 0.00 0.00 0.00 1.75
3205 3263 2.623418 TACCTCTGATGTGGTCCACT 57.377 50.000 22.56 8.50 40.21 4.00
3328 3389 0.176680 CAATGACTCGGTCCTGGGAG 59.823 60.000 0.00 0.00 36.36 4.30
3451 3512 0.337082 TGGGAGGGTAGGACGAATCA 59.663 55.000 0.00 0.00 0.00 2.57
3508 3571 1.800681 GCTTGGGCCACGTACAATC 59.199 57.895 5.23 0.00 0.00 2.67
3575 3679 7.390440 CGGGGATCATAATATCAAGTTGCTTTA 59.610 37.037 0.00 0.00 0.00 1.85
3588 3692 4.202792 ACCCTCTTCTCGGGGATCATAATA 60.203 45.833 4.93 0.00 46.40 0.98
3675 3782 1.142870 TCTAGGCCGATGGGAAAATGG 59.857 52.381 0.00 0.00 34.06 3.16
3788 4030 4.781775 TTTTCCCATCGGCCTAGAATTA 57.218 40.909 0.00 0.00 0.00 1.40
3868 4121 5.144100 ACATTATGATCTCCGAGAAGAGGT 58.856 41.667 1.27 0.00 34.46 3.85
3910 4163 3.064271 TCAAGTACCACGCAACAACTTTC 59.936 43.478 0.00 0.00 0.00 2.62
3930 4183 6.806751 AGCGCTTATCTATTCAGTACTTTCA 58.193 36.000 2.64 0.00 0.00 2.69
3940 4214 1.807142 GGCCCAAGCGCTTATCTATTC 59.193 52.381 24.55 7.65 41.24 1.75
4049 4323 7.972301 GGAAGGATCCAATATATCCAGATAGG 58.028 42.308 15.82 0.00 44.62 2.57
4070 4344 4.081642 TGGAGGAAAAGACGTCATAGGAAG 60.082 45.833 19.50 0.00 0.00 3.46
4082 4360 5.770663 CGTAGGAGATAGATGGAGGAAAAGA 59.229 44.000 0.00 0.00 0.00 2.52
4147 4425 7.962995 ATGTCTGTACATAGAAAGAAGGAGA 57.037 36.000 0.00 0.00 44.66 3.71
4165 4446 3.902881 AGCAGAACCTCCTAATGTCTG 57.097 47.619 0.00 0.00 0.00 3.51
4233 4517 0.441145 ATTGGAACTACGTTTCGCGC 59.559 50.000 0.00 0.00 46.11 6.86
4292 4576 2.229784 CAGTTGCCCTTTCATTCACCTC 59.770 50.000 0.00 0.00 0.00 3.85
4323 4607 5.083533 AGTTGTGTTGAAGCCAATCAAAA 57.916 34.783 0.00 0.00 40.76 2.44
4348 4632 7.108841 AGTGGCATCGTATTACTCTAAAAGA 57.891 36.000 0.00 0.00 0.00 2.52
4350 4634 8.004087 AGTAGTGGCATCGTATTACTCTAAAA 57.996 34.615 0.00 0.00 0.00 1.52
4405 4695 4.413851 AGAAGAAAATCCCTGTCCCTATCC 59.586 45.833 0.00 0.00 0.00 2.59
4660 4955 6.723977 TGGTCTACCAAAATAGAAATGCCTTT 59.276 34.615 0.00 0.00 44.35 3.11
4768 5063 3.118261 ACCTATACCCGAACTAGTGACGA 60.118 47.826 19.56 5.14 0.00 4.20
4769 5064 3.209410 ACCTATACCCGAACTAGTGACG 58.791 50.000 13.47 13.47 0.00 4.35
5034 5372 7.676683 AGGATAAGCAGTAATTCAGGTTAGA 57.323 36.000 0.00 0.00 31.27 2.10
5047 5385 2.122768 AGCAGCCTAAGGATAAGCAGT 58.877 47.619 0.00 0.00 0.00 4.40
5058 5396 1.205655 CTGTACAGAGCAGCAGCCTAA 59.794 52.381 18.45 0.00 43.56 2.69
5175 5578 5.324409 TGATAAGCAAAGAAGGATTGTGGT 58.676 37.500 0.00 0.00 0.00 4.16
5373 5776 5.243954 TCTTGCATAGTAGACCAATATCGCT 59.756 40.000 0.00 0.00 0.00 4.93
5527 5978 8.693120 ATCCTACTATATCAGTTCTGTTCGAA 57.307 34.615 0.00 0.00 38.80 3.71
6257 7701 5.392057 GCGAATTCTGGTAAGGAAAAAGGAG 60.392 44.000 3.52 0.00 0.00 3.69
6259 7703 4.459337 AGCGAATTCTGGTAAGGAAAAAGG 59.541 41.667 3.52 0.00 0.00 3.11
6281 7725 2.014128 ACAAACGACAGGACAAACCAG 58.986 47.619 0.00 0.00 42.04 4.00
6284 7728 4.151867 GGAGATACAAACGACAGGACAAAC 59.848 45.833 0.00 0.00 0.00 2.93
6308 7752 4.770795 AGATAACACTAGGCATTCACACC 58.229 43.478 0.00 0.00 0.00 4.16
6347 7791 4.944048 ACATGCACGCTATCACTAATGTA 58.056 39.130 0.00 0.00 0.00 2.29
6429 7873 3.721035 TGATAATGCATGGACAGAGACG 58.279 45.455 0.00 0.00 0.00 4.18
6539 8025 1.826720 TGAGATTTTGCCCAGATTGCC 59.173 47.619 0.00 0.00 0.00 4.52
6547 8033 4.984785 GTGAAAGAACTTGAGATTTTGCCC 59.015 41.667 0.00 0.00 0.00 5.36
6899 8495 9.155975 AGTCTATCACTAATGTAGCTTGTTTTG 57.844 33.333 0.00 0.00 31.37 2.44
7045 8654 4.398988 TGTGCATCCAATGATAGTTCCAAC 59.601 41.667 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.